![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 13 months ago
Closed 13 months ago
#16005 closed defect (nonchimerax)
Graphics crash, macOS 14.6.1, Iris Plus Graphics 655
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.6.1-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x00007ff853526dc0 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 1689 in set_multishadow_view
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 250 in _draw_scene
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 188 in draw
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 84 in draw_new_frame
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 150 in _redraw_timer_callback
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, openmm._openmm, openmm.app.internal.compiled, chimerax.pdb_lib._load_libs, chimerax.surface._surface, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, chimerax.graphics._graphics, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 58)
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{
"uptime" : 160000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro15,2",
"coalitionID" : 9678,
"osVersion" : {
"train" : "macOS 14.6.1",
"build" : "23G93",
"releaseType" : "User"
},
"captureTime" : "2024-09-24 16:00:02.8206 +0200",
"codeSigningMonitor" : 0,
"incident" : "5874C612-0A0A-47AD-96AB-F8D54EEA0049",
"pid" : 46200,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-09-24 14:49:11.5070 +0200",
"procStartAbsTime" : 160484542133433,
"procExitAbsTime" : 164735736824045,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"3C18038A-1839-5728-A3A7-57BDBB3C7A0C","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "9B98626C-34AA-4037-BF37-43F9688AEC0C",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 107566,
"bridgeVersion" : {"build":"21P6074","train":"8.6"},
"sleepWakeUUID" : "E1CB7B69-F1A7-4184-A57E-A1CFD1144A17",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"termination" : {"flags":0,"code":6,"namespace":"SIGNAL","indicator":"Abort trap: 6","byProc":"ChimeraX","byPid":46200},
"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
"asi" : {"libsystem_c.dylib":["abort() called"]},
"asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000002\n"],
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"faultingThread" : 0,
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===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/gabrielumajioka/Desktop/project T7SS /refinament modelling
> T7SS/Validation Table 24-09-23/pdb_extract_coord_16040.cif"
Summary of feedback from opening /Users/gabrielumajioka/Desktop/project T7SS
/refinament modelling T7SS/Validation Table
24-09-23/pdb_extract_coord_16040.cif
---
warnings | Unknown polymer entity '1' near line 80
Unknown polymer entity '2' near line 718
Unknown polymer entity '3' near line 2530
Unknown polymer entity '4' near line 4345
Unknown polymer entity '5' near line 7365
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for pdb_extract_coord_16040.cif #1
---
Chain | Description
A | No description available
C | No description available
D | No description available
G | No description available
H | No description available
> show cartoons
> hide atoms
> open "/Users/gabrielumajioka/Desktop/project T7SS /refinament modelling
> T7SS/Validation Table 24-09-23/pdb_extract_coord_16040.cif"
Summary of feedback from opening /Users/gabrielumajioka/Desktop/project T7SS
/refinament modelling T7SS/Validation Table
24-09-23/pdb_extract_coord_16040.cif
---
warnings | Unknown polymer entity '1' near line 80
Unknown polymer entity '2' near line 718
Unknown polymer entity '3' near line 2530
Unknown polymer entity '4' near line 4345
Unknown polymer entity '5' near line 7365
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for pdb_extract_coord_16040.cif #2
---
Chain | Description
A | No description available
C | No description available
D | No description available
G | No description available
H | No description available
> open "/Users/gabrielumajioka/Desktop/project T7SS /refinament modelling
> T7SS/Validation Table 24-09-23/isolde pre Real
> Space/isolde/model_paper_sept2024(start_model).pdb"
Summary of feedback from opening /Users/gabrielumajioka/Desktop/project T7SS
/refinament modelling T7SS/Validation Table 24-09-23/isolde pre Real
Space/isolde/model_paper_sept2024(start_model).pdb
---
warnings | PDB SEQRES record for chain C is incomplete. Ignoring input
sequence records as basis for sequence.
PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
as basis for sequence.
Chain information for model_paper_sept2024(start_model).pdb #3
---
Chain | Description
A | No description available
C | No description available
D | No description available
G | No description available
H | No description available
> hide atoms
> show cartoons
> select add #1
11945 atoms, 12209 bonds, 4 pseudobonds, 1441 residues, 2 models selected
> color (#!1 & sel) red
> select add #3
35556 atoms, 36085 bonds, 8 pseudobonds, 2882 residues, 4 models selected
> color (#!1,3 & sel) light gray
> select add #2
47501 atoms, 48294 bonds, 12 pseudobonds, 4323 residues, 6 models selected
> select subtract #2
35556 atoms, 36085 bonds, 8 pseudobonds, 2882 residues, 4 models selected
> select add #2
47501 atoms, 48294 bonds, 12 pseudobonds, 4323 residues, 6 models selected
> close #2
> hide #!3 models
> hide #!1 models
> show #!1 models
> color (#!1 & sel) red
> show #!3 models
> select clear
> ui tool show Matchmaker
> matchmaker #!3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker pdb_extract_coord_16040.cif, chain H (#1) with
model_paper_sept2024(start_model).pdb, chain H (#3), sequence alignment score
= 2320.4
RMSD between 550 pruned atom pairs is 0.618 angstroms; (across all 564 pairs:
0.969)
> hide #!1 models
> select add #3
23611 atoms, 23876 bonds, 4 pseudobonds, 1441 residues, 2 models selected
> close #1
> open "/Users/gabrielumajioka/Desktop/project T7SS /1-PAPER
> T7SS/MAPS/J2727-refined dimer/cryosparc_P14_J2627_004_volume_map_sharp.mrc"
Opened cryosparc_P14_J2627_004_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 1.2, shown at level 0.0587, step 2, values float32
> volume #1 level 0.269
> volume #1 level 0.03586
> volume #1 level 0.4439
> select add #1
23611 atoms, 23876 bonds, 4 pseudobonds, 1441 residues, 4 models selected
> select subtract #3
2 models selected
> select add #3
23611 atoms, 23876 bonds, 4 pseudobonds, 1441 residues, 4 models selected
> select subtract #1
23611 atoms, 23876 bonds, 4 pseudobonds, 1441 residues, 2 models selected
> hide #!1 models
> close #3
> open "/Users/gabrielumajioka/Desktop/project T7SS /1-PAPER T7SS/Validation
> Table 24-09-23/Monomer_final_24-09-24.pdb"
Chain information for Monomer_final_24-09-24.pdb #2
---
Chain | Description
A | No description available
C | No description available
D | No description available
G | No description available
H | No description available
> show #!1 models
> hide atoms
> show cartoons
> volume #1 level 0.1525
> volume #1 level 0.07895
> volume #1 level 0.02066
> volume #1 level 0.05614
> hide #!1 models
> open /Users/gabrielumajioka/Desktop/dimer/Sub2.pdb
Chain information for Sub2.pdb #3
---
Chain | Description
A | No description available
C | No description available
D | No description available
G | No description available
H | No description available
> open /Users/gabrielumajioka/Desktop/dimer/Sub1.pdb
Chain information for Sub1.pdb #4
---
Chain | Description
A | No description available
C | No description available
D | No description available
G | No description available
H | No description available
> select add #2
11945 atoms, 12210 bonds, 4 pseudobonds, 1441 residues, 2 models selected
> close #2
> hide atoms
> show cartoons
> select add #3
11945 atoms, 12210 bonds, 4 pseudobonds, 1441 residues, 2 models selected
> select subtract #3
Nothing selected
> ui tool show Matchmaker
> matchmaker #3/H to #4/G pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Sub1.pdb, chain G (#4) with Sub2.pdb, chain H (#3), sequence
alignment score = 1665.4
RMSD between 308 pruned atom pairs is 0.601 angstroms; (across all 356 pairs:
3.201)
> show #!1 models
> hide #!1 models
> select #4/G
3020 atoms, 3086 bonds, 1 pseudobond, 356 residues, 2 models selected
> delete atoms (#!4 & sel)
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 392, in _items_change
item_names = self._item_names()
^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 47, in _item_names
values = [v for v in self.list_func() if self.filter_func(v)]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 47, in
values = [v for v in self.list_func() if self.filter_func(v)]
^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/match_maker/tool.py", line 518, in
filter_func=lambda c, ref=chain: c.structure != ref.structure)
^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes":
AttributeError: 'Sequence' object has no attribute 'structure'
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/match_maker/tool.py", line 518, in
filter_func=lambda c, ref=chain: c.structure != ref.structure)
^^^^^^^^^^^^^
See log for complete Python traceback.
> delete bonds (#!4 & sel)
> select #3/H
4660 atoms, 4760 bonds, 3 pseudobonds, 564 residues, 2 models selected
> select #3/H
4660 atoms, 4760 bonds, 3 pseudobonds, 564 residues, 2 models selected
> select #3/G
3020 atoms, 3086 bonds, 1 pseudobond, 356 residues, 2 models selected
> show #!1 models
> hide #!1 models
> delete atoms (#!3 & sel)
> delete bonds (#!3 & sel)
> show #!1 models
> hide #!1 models
> show #!1 models
> volume #1 level 0.07132
> volume #1 level 0.07891
> volume #1 level 0.1143
> volume #1 level 0.08397
> open "/Users/gabrielumajioka/Desktop/project T7SS /1-PAPER T7SS/Other
> files/hypothesis/heterotetrameric diverse species
> YukB_2xYukC_YukD/BSU/BSU168_YukBCD.pdb"
Chain information for BSU168_YukBCD.pdb #2
---
Chain | Description
A B | No description available
C | No description available
D | No description available
> ui tool show Matchmaker
> matchmaker #2 to #4
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Sub1.pdb, chain H (#4) with BSU168_YukBCD.pdb, chain C (#2),
sequence alignment score = 2611.1
RMSD between 227 pruned atom pairs is 1.042 angstroms; (across all 561 pairs:
4.905)
> hide #!1 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> select add #2
12518 atoms, 12797 bonds, 1543 residues, 1 model selected
> close #2
> open "/Users/gabrielumajioka/Desktop/project T7SS /1-PAPER T7SS/Other
> files/hypothesis/heterotetrameric diverse species
> YukB_2xYukC_YukD/BSU/YukBCD_BSU168_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb"
Chain information for
YukBCD_BSU168_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb
#2
---
Chain | Description
A B | No description available
C | No description available
D | No description available
> select add #2
12518 atoms, 12797 bonds, 1543 residues, 1 model selected
> close #2
> open "/Users/gabrielumajioka/Desktop/project T7SS /1-PAPER T7SS/Other
> files/DIMER of heterotetramermeric diverse species
> /dimer_BSU168ls/BSU168_2.pdb"
Chain information for BSU168_2.pdb #2
---
Chain | Description
A B | No description available
C D E F | No description available
G H | No description available
> ui tool show Matchmaker
> matchmaker #2 to #4
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Sub1.pdb, chain H (#4) with BSU168_2.pdb, chain G (#2), sequence
alignment score = 2596.1
RMSD between 358 pruned atom pairs is 1.329 angstroms; (across all 561 pairs:
4.528)
> hide atoms
> show cartoons
> hide #!3 models
> show #!3 models
> close #3
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> select add #2
31756 atoms, 32398 bonds, 3908 residues, 1 model selected
> select add #4
40681 atoms, 41522 bonds, 3 pseudobonds, 4993 residues, 3 models selected
> close #4
> select subtract #2
Nothing selected
> select add #2
31756 atoms, 32398 bonds, 3908 residues, 1 model selected
> open /Users/gabrielumajioka/Desktop/dimer/Sub1.pdb
Chain information for Sub1.pdb #3
---
Chain | Description
A | No description available
C | No description available
D | No description available
G | No description available
H | No description available
> hide #2 models
> show #!3 cartoons
> show #!3 atoms
> hide #!3 atoms
> show #!3 cartoons
> show #2 models
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A #2/B #3/A
Alignment identifier is 1
> sequence chain #2/C #2/D #2/E #2/F
Alignment identifier is 2
> sequence chain #2/G #2/H
Alignment identifier is 3
> sequence chain #3/C
Alignment identifier is 3/C
> sequence chain #3/D
Alignment identifier is 3/D
> sequence chain #3/G
Alignment identifier is 3/G
> sequence chain #3/H
Alignment identifier is 3/H
> select #2/G-H:1
16 atoms, 14 bonds, 2 residues, 1 model selected
> select #2/G-H
15742 atoms, 16084 bonds, 1946 residues, 1 model selected
> select #2/G-H:947-973
434 atoms, 444 bonds, 54 residues, 1 model selected
> select #2/G-H:541-973
6880 atoms, 7018 bonds, 866 residues, 1 model selected
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-22.5.11
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2,3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 2022.140.5.0.0 (iBridge: 21.16.6074.0.0,0)
OS Loader Version: 580.140.1~8
Software:
System Software Overview:
System Version: macOS 14.6.1 (23G93)
Kernel Version: Darwin 23.6.0
Time since boot: 6 days, 5 hours, 59 minutes
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL UP3216Q:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 3840 x 2160 @ 30.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 4NCD077E073P
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: DVI or HDMI
Adapter Firmware Version: 7,55
LG UltraFine:
Resolution: 6016 x 3384
UI Looks like: 3008 x 1692
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 806NTKF1F589
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.22.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.7.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 13 months ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 13 months ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 14.6.1, Iris Plus Graphics 655 |
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Apple Intel graphics driver crash.