![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 14 months ago
Closed 14 months ago
#15933 closed defect (duplicate)
Crash in garbage collection
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.6.9-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff8559537c0 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in __iter__
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/selectors.py", line 356 in _update_select_residues_menu
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/selectors.py", line 242 in
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PIL._imagingmath (total: 56)
{"app_name":"ChimeraX","timestamp":"2024-09-11 14:25:57.00 -0500","app_version":"1.7.1","slice_uuid":"194a3167-3db5-3029-8d22-1d742b826bb9","build_version":"1.7.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.6.9 (22G830)","roots_installed":0,"name":"ChimeraX","incident_id":"28534ED4-ACA4-47DF-8ED0-A5362DA5B56D"}
{
"uptime" : 1000000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "iMac18,3",
"coalitionID" : 6325,
"osVersion" : {
"train" : "macOS 13.6.9",
"build" : "22G830",
"releaseType" : "User"
},
"captureTime" : "2024-09-11 14:25:54.6556 -0500",
"incident" : "28534ED4-ACA4-47DF-8ED0-A5362DA5B56D",
"pid" : 43068,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-09-10 13:14:30.8237 -0500",
"procStartAbsTime" : 998534258728418,
"procExitAbsTime" : 1032107983508770,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"BAA69DD8-6E66-5ED8-B117-1D265EC12598","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "77CFA7F5-DC7C-4870-3C7A-6662DF07730E",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 15867,
"sleepWakeUUID" : "4BE83C6F-F6A3-41A7-B4C9-71E11DA744B2",
"sip" : "enabled",
"vmRegionInfo" : "0xa9 is not in any region. Bytes before following region: 140737488211799\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7ffffffdd000-7ffffffde000 [ 4K] r-x\/r-x SM=SHM ",
"exception" : {"codes":"0x0000000000000001, 0x00000000000000a9","rawCodes":[1,169],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00000000000000a9"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":43068},
"vmregioninfo" : "0xa9 is not in any region. Bytes before following region: 140737488211799\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7ffffffdd000-7ffffffde000 [ 4K] r-x\/r-x SM=SHM ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"queue":"com.apple.main-thread","instructionState":{"instructionStream":{"bytes":[255,255,255,255,72,137,216,72,139,0,72,255,194,72,57,195,117,245,72,141,61,197,18,22,0,72,141,181,112,255,255,255,49,192,232,191,131,254,255,72,139,5,104,231,22,0,72,139,0,72,59,69,216,117,13,72,131,196,112,91,65,92,65,94,65,95,93,195,232,205,174,14,0,102,46,15,31,132,0,0,0,0,0,15,31,0,85,72,137,229,83,80,72,139,71,8,246,128,169,0,0,0,64,117,9,49,192,72,131,196,8,91,93,195,72,137,251,72,139,128,72,1,0,0,72,133,192,117,18,72,139,67,248,168,2,116,224,72,131,192,252,72,137,67,248,235,214,72,137,223,255,208,133,192,117,229,235,203,15,31,132,0,0,0,0,0,85,72,137,229,65,86,83,72,139,71,8,246,128,169,0,0,0,64,117,7,49,192,91,65,94,93],"offset":96}},"frames":[{"imageOffset":33174,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":149},{"imageOffset":24294,"symbol":"pthread_kill","symbolLocation":263,"imageIndex":150},{"imageOffset":271873,"symbol":"raise","symbolLocation":26,"imageIndex":151},{"imageOffset":2590164,"symbol":"faulthandler_fatal_error","symbolLocation":388,"imageIndex":1},{"imageOffset":13805,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":152},{"imageOffset":0,"imageIndex":153},{"imageOffset":1210612,"symbol":"tupletraverse","symbolLocation":52,"imageIndex":1},{"imageOffset":2574472,"symbol":"gc_collect_main","symbolLocation":2568,"imageIndex":1},{"imageOffset":2580738,"symbol":"_PyObject_GC_Link","symbolLocation":306,"imageIndex":1},{"imageOffset":1289213,"symbol":"_PyType_AllocNoTrack","symbolLocation":125,"imageIndex":1},{"imageOffset":1237630,"symbol":"PyType_GenericAlloc","symbolLocation":14,"imageIndex":1},{"imageOffset":198266,"symbol":"__pyx_tp_new_8chimerax_6atomic_5cymol_CyResidue(_typeobject*, _object*, _object*)","symbolLocation":58,"imageIndex":83},{"imageOffset":1223445,"symbol":"type_call","symbolLocation":69,"imageIndex":1},{"imageOffset":680881,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":1},{"imageOffset":692231,"symbol":"object_vacall","symbolLocation":535,"imageIndex":1},{"imageOffset":693183,"symbol":"PyObject_CallFunctionObjArgs","symbolLocation":159,"imageIndex":1},{"imageOffset":363656,"symbol":"pyinstance::PythonInstance::py_instance(bool) const","symbolLocation":152,"imageIndex":79},{"imageOffset":249799,"symbol":"__pyx_pw_8chimerax_6atomic_5cymol_9CyResidue_51c_ptr_to_py_inst(_object*, _object*, _object*)","symbolLocation":87,"imageIndex":83},{"imageOffset":1095620,"symbol":"cfunction_call","symbolLocation":52,"imageIndex":1},{"imageOffset":680881,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":1},{"imageOffset":1917927,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60455,"imageIndex":1},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":1},{"imageOffset":1262223,"symbol":"slot_tp_iter","symbolLocation":175,"imageIndex":1},{"imageOffset":1909862,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":52390,"imageIndex":1},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":1},{"imageOffset":1257368,"symbol":"PyQtSlot::call(_object*, _object*) const","symbolLocation":40,"imageIndex":44},{"imageOffset":1257114,"symbol":"PyQtSlot::invoke(void**, _object*, void*, bool) const","symbolLocation":362,"imageIndex":44},{"imageOffset":1261029,"symbol":"PyQtSlotProxy::unislot(void**)","symbolLocation":85,"imageIndex":44},{"imageOffset":1260890,"symbol":"PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)","symbolLocation":58,"imageIndex":44},{"imageOffset":777575,"imageIndex":45},{"imageOffset":1921451,"imageIndex":48},{"imageOffset":778274,"imageIndex":45},{"imageOffset":212192,"imageIndex":68},{"imageOffset":6908309,"symbol":"-[NSMenu _sendMenuOpeningNotification:]","symbolLocation":97,"imageIndex":154},{"imageOffset":3940508,"symbol":"-[NSCarbonMenuImpl _carbonOpenEvent:handlerCallRef:]","symbolLocation":191,"imageIndex":154},{"imageOffset":3167236,"symbol":"NSSLMMenuEventHandler","symbolLocation":990,"imageIndex":154},{"imageOffset":36159,"symbol":"DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*)","symbolLocation":1381,"imageIndex":155},{"imageOffset":33160,"symbol":"SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*)","symbolLocation":333,"imageIndex":155},{"imageOffset":32815,"symbol":"SendEventToEventTargetWithOptions","symbolLocation":45,"imageIndex":155},{"imageOffset":554870,"symbol":"SendMenuOpening(MenuSelectData*, MenuData*, double, unsigned int, unsigned int, __CFDictionary*, unsigned char, unsigned char*)","symbolLocation":520,"imageIndex":155},{"imageOffset":1764360,"symbol":"DrawTheMenu(MenuSelectData*, MenuData*, __CFArray**, unsigned char, unsigned char*)","symbolLocation":296,"imageIndex":155},{"imageOffset":677484,"symbol":"OpenSubmenu(MenuSelectData*, MenuData*, unsigned char, unsigned char*)","symbolLocation":179,"imageIndex":155},{"imageOffset":1777487,"symbol":"TrackMenuCommon(MenuSelectData&, unsigned char*, SelectionData*, MenuResult*, MenuResult*)","symbolLocation":1224,"imageIndex":155},{"imageOffset":644200,"symbol":"MenuSelectCore(MenuData*, Point, double, unsigned int, OpaqueMenuRef**, unsigned short*)","symbolLocation":397,"imageIndex":155},{"imageOffset":643649,"symbol":"_HandleMenuSelection2","symbolLocation":459,"imageIndex":155},{"imageOffset":1887909,"symbol":"_NSHandleCarbonMenuEvent","symbolLocation":215,"imageIndex":154},{"imageOffset":1887506,"symbol":"_DPSEventHandledByCarbon","symbolLocation":54,"imageIndex":154},{"imageOffset":254059,"symbol":"-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":2919,"imageIndex":154},{"imageOffset":196663,"symbol":"-[NSApplication run]","symbolLocation":586,"imageIndex":154},{"imageOffset":102572,"imageIndex":68},{"imageOffset":488230,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":486,"imageIndex":45},{"imageOffset":451125,"symbol":"QCoreApplication::exec()","symbolLocation":133,"imageIndex":45},{"imageOffset":2252186,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":90,"imageIndex":47},{"imageOffset":1095658,"symbol":"cfunction_call","symbolLocation":90,"imageIndex":1},{"imageOffset":680881,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":1},{"imageOffset":1917927,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60455,"imageIndex":1},{"imageOffset":1852538,"symbol":"PyEval_EvalCode","symbolLocation":282,"imageIndex":1},{"imageOffset":1830115,"symbol":"builtin_exec","symbolLocation":483,"imageIndex":1},{"imageOffset":1098052,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":68,"imageIndex":1},{"imageOffset":1917679,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60207,"imageIndex":1},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":1},{"imageOffset":2561789,"symbol":"pymain_run_module","symbolLocation":253,"imageIndex":1},{"imageOffset":2560449,"symbol":"Py_RunMain","symbolLocation":2225,"imageIndex":1},{"imageOffset":2564475,"symbol":"pymain_main","symbolLocation":43,"imageIndex":1},{"imageOffset":2564426,"symbol":"Py_Main","symbolLocation":42,"imageIndex":1},{"imageOffset":15770,"symbol":"main","symbolLocation":122,"imageIndex":0},{"imageOffset":25624,"symbol":"start","symbolLocation":1896,"imageIndex":156}],"id":8241437,"triggered":true,"threadState":{"r13":{"value":5868112385},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":11},"rsi":{"value":11},"r8":{"value":2},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":140704564459456,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":14757395258967641293},"r15":{"value":22},"rbx":{"value":140704564459456,"symbolLocation":0,"symbol":"_main_thread"},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703432962454,"matchesCrashFrame":1},"rbp":{"value":140358358784528},"rsp":{"value":140358358784488},"r12":{"value":259},"rcx":{"value":140358358784488},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"name":"CrBrowserMain"},{"id":8241461,"frames":[{"imageOffset":16526,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":149},{"imageOffset":26456,"symbol":"_pthread_cond_wait","symbolLocation":1242,"imageIndex":150},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":20},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241462,"frames":[{"imageOffset":16526,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":149},{"imageOffset":26456,"symbol":"_pthread_cond_wait","symbolLocation":1242,"imageIndex":150},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":20},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241463,"frames":[{"imageOffset":16526,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":149},{"imageOffset":26456,"symbol":"_pthread_cond_wait","symbolLocation":1242,"imageIndex":150},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":20},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241535,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":44466,"symbol":"kevent64","symbolLocation":10,"imageIndex":149},{"imageOffset":66456106,"imageIndex":55},{"imageOffset":66455847,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":65958573,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241537,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66009023,"imageIndex":55},{"imageOffset":66011756,"imageIndex":55},{"imageOffset":66010589,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241538,"name":"Chrome_IOThread","frames":[{"imageOffset":44466,"symbol":"kevent64","symbolLocation":10,"imageIndex":149},{"imageOffset":66456106,"imageIndex":55},{"imageOffset":66455847,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":48386978,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241539,"name":"NetworkConfigWatcher","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66251759,"imageIndex":55},{"imageOffset":65421769,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241543,"name":"CompositorTileWorker1","frames":[{"imageOffset":16526,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":149},{"imageOffset":26456,"symbol":"_pthread_cond_wait","symbolLocation":1242,"imageIndex":150},{"imageOffset":66219291,"imageIndex":55},{"imageOffset":100616493,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241544,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66251759,"imageIndex":55},{"imageOffset":65421769,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241545,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":44466,"symbol":"kevent64","symbolLocation":10,"imageIndex":149},{"imageOffset":66456106,"imageIndex":55},{"imageOffset":66455847,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241546,"name":"NetworkConfigWatcher","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66251759,"imageIndex":55},{"imageOffset":65421769,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241547,"name":"VizCompositorThread","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66251759,"imageIndex":55},{"imageOffset":65421769,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241554,"name":"NetworkService","frames":[{"imageOffset":44466,"symbol":"kevent64","symbolLocation":10,"imageIndex":149},{"imageOffset":66456106,"imageIndex":55},{"imageOffset":66455847,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241555,"name":"NetworkConfigWatcher","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66251759,"imageIndex":55},{"imageOffset":65421769,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241556,"name":"ThreadPoolSingleThreadForegroundBlocking0","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66009023,"imageIndex":55},{"imageOffset":66011756,"imageIndex":55},{"imageOffset":66010829,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241579,"name":"NetworkConfigWatcher","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66251759,"imageIndex":55},{"imageOffset":65421769,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241609,"name":"com.apple.NSEventThread","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":511983,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":145,"imageIndex":157},{"imageOffset":506480,"symbol":"__CFRunLoopRun","symbolLocation":1365,"imageIndex":157},{"imageOffset":503473,"symbol":"CFRunLoopRunSpecific","symbolLocation":560,"imageIndex":157},{"imageOffset":1699173,"symbol":"_NSEventThread","symbolLocation":132,"imageIndex":154},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241635,"name":"MemoryInfra","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66251759,"imageIndex":55},{"imageOffset":65421769,"imageIndex":55},{"imageOffset":65919580,"imageIndex":55},{"imageOffset":65624472,"imageIndex":55},{"imageOffset":66059960,"imageIndex":55},{"imageOffset":66060362,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8241636,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66009023,"imageIndex":55},{"imageOffset":66011034,"imageIndex":55},{"imageOffset":66010637,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8283859,"name":"QFileInfoGatherer","frames":[{"imageOffset":16526,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":149},{"imageOffset":26456,"symbol":"_pthread_cond_wait","symbolLocation":1242,"imageIndex":150},{"imageOffset":2107627,"imageIndex":45},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":45},{"imageOffset":4529677,"symbol":"QFileInfoGatherer::run()","symbolLocation":125,"imageIndex":49},{"imageOffset":2066019,"imageIndex":45},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8329262,"name":"QFileInfoGatherer","frames":[{"imageOffset":16526,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":149},{"imageOffset":26456,"symbol":"_pthread_cond_wait","symbolLocation":1242,"imageIndex":150},{"imageOffset":2107627,"imageIndex":45},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":45},{"imageOffset":4529677,"symbol":"QFileInfoGatherer::run()","symbolLocation":125,"imageIndex":49},{"imageOffset":2066019,"imageIndex":45},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8330012,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66009023,"imageIndex":55},{"imageOffset":66011756,"imageIndex":55},{"imageOffset":66010733,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8685184,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66009023,"imageIndex":55},{"imageOffset":66011756,"imageIndex":55},{"imageOffset":66010733,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8685235,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":5458,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":149},{"imageOffset":63181,"symbol":"mach_msg2_internal","symbolLocation":78,"imageIndex":149},{"imageOffset":34180,"symbol":"mach_msg_overwrite","symbolLocation":692,"imageIndex":149},{"imageOffset":6202,"symbol":"mach_msg","symbolLocation":19,"imageIndex":149},{"imageOffset":66252326,"imageIndex":55},{"imageOffset":66009023,"imageIndex":55},{"imageOffset":66011034,"imageIndex":55},{"imageOffset":66010589,"imageIndex":55},{"imageOffset":66222344,"imageIndex":55},{"imageOffset":25043,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":150},{"imageOffset":7123,"symbol":"thread_start","symbolLocation":15,"imageIndex":150}]},{"id":8685314,"frames":[{"imageOffset":7088,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":150}]},{"id":8685420,"frames":[{"imageOffset":7088,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":150}]},{"id":8685449,"frames":[{"imageOffset":7088,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":150}]},{"id":8685465,"frames":[{"imageOffset":7088,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":150}]}],
"usedImages" : [
{
"source" : "P",
"arch" : "x86_64",
"base" : 4517093376,
"CFBundleShortVersionString" : "1.7.1",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "194a3167-3db5-3029-8d22-1d742b826bb9",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.7.1.0"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4531732480,
"CFBundleShortVersionString" : "3.11.2, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 4079616,
"uuid" : "24670b23-d78a-3eaa-bca8-22faf877f190",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.2"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4519923712,
"size" : 49152,
"uuid" : "e72184af-f88a-3d22-985d-ba7ae840d7bb",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4519669760,
"size" : 65536,
"uuid" : "bce0a7e8-5fe0-3b22-a86a-efce56d39c06",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4519817216,
"size" : 16384,
"uuid" : "aacd4a54-a0d7-3ca3-946c-75e1b46b8800",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522352640,
"size" : 32768,
"uuid" : "2e40ac09-b4c6-3504-a3e2-a3913e730146",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522450944,
"size" : 16384,
"uuid" : "5264b516-4f77-3211-bbb5-8720cd62f60a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4523094016,
"size" : 196608,
"uuid" : "c1616b8c-e517-3843-9946-07100812a3fa",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522516480,
"size" : 16384,
"uuid" : "f286872f-bf81-34a6-87be-7d1797853da1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522582016,
"size" : 16384,
"uuid" : "e0374123-b7f9-38e5-b11f-58349af543a6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522647552,
"size" : 32768,
"uuid" : "4857358d-b2e1-3822-aebb-06a8878b427d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522729472,
"size" : 32768,
"uuid" : "e99b9ab9-9e03-3a38-ad6e-92f4c11a0ccd",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522135552,
"size" : 32768,
"uuid" : "3cd6c3fb-9fe0-3b14-a169-570d6d72caba",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522233856,
"size" : 16384,
"uuid" : "57e65ad6-c0ea-38d8-a056-41ad88aa2610",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522971136,
"size" : 16384,
"uuid" : "463cc059-41c7-330e-b20b-05cb0fdcad11",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522811392,
"size" : 32768,
"uuid" : "fab56287-4c23-300d-9887-cd45a5f7d3a7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4522893312,
"size" : 16384,
"uuid" : "968f7d44-5fa3-31d9-8b22-92eb2206cc84",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4527460352,
"size" : 1130496,
"uuid" : "248383d9-36c6-3353-bbce-8dcc6b4ce8f7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4525666304,
"size" : 32768,
"uuid" : "c77a08cd-9e75-30d9-84cc-a69845c1c3ec",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4545527808,
"size" : 4931584,
"uuid" : "2b00c859-0a9f-3caf-b744-6c2225d80f2b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4618915840,
"size" : 64094208,
"uuid" : "9d768904-ac4b-327d-8126-cec11a08b966",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4558790656,
"size" : 6565888,
"uuid" : "ae37c55e-f850-3cf7-86e4-bbd86809bc1d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4528771072,
"size" : 319488,
"uuid" : "a1783d23-d187-3d92-ade7-2a80619e7485",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4526796800,
"size" : 69632,
"uuid" : "6d59656e-a224-3642-80b9-ca07ca06e7c1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4525469696,
"size" : 114688,
"uuid" : "6078491a-679a-38fb-99f9-93212e36864a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4527091712,
"size" : 16384,
"uuid" : "b62770cf-9a42-3e1b-8e2d-bc816ac0e837",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4530176000,
"size" : 81920,
"uuid" : "639e25c9-cea2-3d74-b5c2-849e946bcc2a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4527157248,
"size" : 81920,
"uuid" : "14c5a954-5a10-341d-930e-646b8183499c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4539187200,
"size" : 131072,
"uuid" : "b1cb953c-267f-3883-a539-bdcd0ec454a9",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4531404800,
"size" : 81920,
"uuid" : "98efd1f3-eca0-387f-bcde-bddf9588e58b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4541325312,
"size" : 475136,
"uuid" : "540847df-9827-358d-99cf-88c3e8d2b851",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4540739584,
"size" : 131072,
"uuid" : "6edf4fc8-aedc-3490-8d35-cea9228e02b1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4542529536,
"size" : 196608,
"uuid" : "af2bead6-eea9-3b15-bc85-d48eae168228",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4526936064,
"size" : 32768,
"uuid" : "a5bc2ee2-086d-3ee9-8f96-3f9a55d29897",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4599148544,
"size" : 2260992,
"uuid" : "8365300e-480c-3c4d-9ca6-539638c6704e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4527337472,
"size" : 32768,
"uuid" : "350317ec-40ef-3786-8235-1f4a252e2bdf",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4543385600,
"size" : 344064,
"uuid" : "28fb5ca7-d743-37b2-ada0-3e2f189421cc",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4540465152,
"size" : 65536,
"uuid" : "ef897ac7-3b50-30b3-90dd-67ed8d383413",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4541018112,
"size" : 49152,
"uuid" : "295d00ff-9980-30db-b256-d03255300066",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4541149184,
"size" : 65536,
"uuid" : "aa144ed2-2766-3453-8242-ba1c7a85b8be",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4531634176,
"size" : 32768,
"uuid" : "c5fdf54a-82e5-35a0-a1f6-b53c802ba054",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4551999488,
"size" : 589824,
"uuid" : "c0f2136b-dde6-3728-92f0-57d0f47098f1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4531535872,
"size" : 16384,
"uuid" : "f68fca4b-5b9f-3986-91bf-f334ea86eead",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4542210048,
"size" : 147456,
"uuid" : "2c719e3d-a419-3692-a578-2819f3d838f6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4609601536,
"size" : 1589248,
"uuid" : "2be8100b-aa99-3117-95ff-0200ddc4032f",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4786556928,
"size" : 5259264,
"uuid" : "35b47b1c-6952-3d39-a5e7-711f3ca228f2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4543119360,
"size" : 98304,
"uuid" : "17a32d1b-857d-3264-9bf6-9192cca7beb2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4603113472,
"size" : 2801664,
"uuid" : "babd94e3-ec19-3110-ab5b-11c39432d8c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4829437952,
"size" : 4964352,
"uuid" : "f36760e5-d1e7-3a93-ae8c-1c3e55e3fc35",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4844003328,
"size" : 6979584,
"uuid" : "49d915f7-1c6d-3bbd-b96f-064260e7d998",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4614041600,
"size" : 573440,
"uuid" : "b80d4b57-c2b5-329a-8f0b-fa6745f22ad0",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4614762496,
"size" : 1474560,
"uuid" : "86bbe80d-1a98-3bdb-b3c7-eee8ee9c9f07",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4545298432,
"size" : 65536,
"uuid" : "31527197-e015-3323-9b1e-d89a57f4122b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4558274560,
"size" : 81920,
"uuid" : "be9b28e7-5ac2-3b5d-9c1e-9cb326210166",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4618170368,
"size" : 311296,
"uuid" : "4a13ff65-e0b7-341f-ac9d-bb5df92cb106",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5027176448,
"size" : 165052416,
"uuid" : "4aa1de3e-464c-340c-ab61-bcd39bfc7658",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4852211712,
"size" : 4079616,
"uuid" : "e586fcd9-f4b6-3610-a075-167f962121c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4826198016,
"size" : 425984,
"uuid" : "3081c960-3da0-328b-8a70-a5cc2464636c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4827561984,
"size" : 557056,
"uuid" : "b83cee7d-31bd-3264-99ce-afa3bf6692c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4558454784,
"size" : 212992,
"uuid" : "795a00a0-138d-33c2-b582-5fd530b0c678",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4857733120,
"size" : 4079616,
"uuid" : "b140050b-a3f5-340b-a110-d1c01906c469",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4837416960,
"size" : 1261568,
"uuid" : "f402edbd-ac12-3e53-a2f4-e1d6932ab755",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4826820608,
"size" : 491520,
"uuid" : "92f7a6de-79af-3b2f-8548-97e6556c3d1a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4613320704,
"size" : 81920,
"uuid" : "5b40aee8-76af-3deb-9c1b-90894adda30a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4545196032,
"size" : 32768,
"uuid" : "4125538e-4145-3504-8c4c-eecafa43ae17",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4835827712,
"size" : 458752,
"uuid" : "398c4f3b-e41e-3c01-8003-a594b5bc7701",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4828315648,
"size" : 196608,
"uuid" : "87e0d2fb-a12c-38ca-b451-0bf21cc5d3ed",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4613500928,
"size" : 147456,
"uuid" : "5b8ebe3c-b7e4-3d4b-950c-fbb3a6870826",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4840439808,
"size" : 655360,
"uuid" : "4bf756eb-ff87-3f7f-8c98-b1eda6463b81",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 4889346048,
"CFBundleShortVersionString" : "4.14.1",
"CFBundleIdentifier" : "com.apple.AMDRadeonX4000GLDriver",
"size" : 1179648,
"uuid" : "cd6fb642-a4b6-3233-af7e-a0de064bbe0b",
"path" : "\/System\/Library\/Extensions\/AMDRadeonX4000GLDriver.bundle\/Contents\/MacOS\/AMDRadeonX4000GLDriver",
"name" : "AMDRadeonX4000GLDriver",
"CFBundleVersion" : "4.1.4"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4839530496,
"size" : 163840,
"uuid" : "a600179c-3d08-331c-ba58-5134eada0b7e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4836974592,
"size" : 180224,
"uuid" : "6f66f2fb-3370-3449-8c56-f3e0001309af",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4837253120,
"size" : 65536,
"uuid" : "f5077020-095f-37b5-9841-9db3e15f3401",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4840050688,
"size" : 49152,
"uuid" : "434ffdf5-a119-33d1-8f61-ae50457a3d17",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4609531904,
"size" : 16384,
"uuid" : "dc7e074f-ad98-3934-aa21-85389e14162e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4618817536,
"size" : 16384,
"uuid" : "e81a2322-9755-3b07-b226-bdaa988e1f3b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4827459584,
"size" : 16384,
"uuid" : "1ab11cdf-f450-33b0-9055-0ec26fb654ee",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4840165376,
"size" : 32768,
"uuid" : "3b8f35f8-8f33-355e-a956-2cc5d0d96c32",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4839948288,
"size" : 16384,
"uuid" : "d0ba4ed3-33c4-30c0-9fb8-0fcdd129cd4a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4912631808,
"size" : 1196032,
"uuid" : "146fbaf9-e571-37ea-8b91-518dd53f8d03",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4839792640,
"size" : 32768,
"uuid" : "88a748b9-8a16-3bfc-ba85-a21a2e8d0dfe",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4843937792,
"size" : 16384,
"uuid" : "3edbdaff-bca7-3dde-878a-d25fb44e9018",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4888862720,
"size" : 212992,
"uuid" : "a9496e39-cd88-3974-aafc-ff947534f4db",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4910157824,
"size" : 360448,
"uuid" : "618ec769-18aa-37be-b55b-7e22658dae7d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4909428736,
"size" : 114688,
"uuid" : "60d71170-122f-3388-8946-9dc82b508714",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4909219840,
"size" : 49152,
"uuid" : "23a4fb23-e7ad-3f20-b2e5-b03ac4a6886e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4840312832,
"size" : 16384,
"uuid" : "5c82e5f4-7664-3325-95c1-a2286b531838",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4909674496,
"size" : 32768,
"uuid" : "9c20a913-80f2-3790-82d6-f5f257f40a80",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4908933120,
"size" : 98304,
"uuid" : "6e842008-31d0-3b82-a669-7322afd7ff18",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4911845376,
"size" : 393216,
"uuid" : "107f31ab-cd24-32ef-bf63-11caf2bb17d4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4909146112,
"size" : 16384,
"uuid" : "5b50f1d9-e783-35c3-af9f-373c9c20ca6c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4909772800,
"size" : 180224,
"uuid" : "51e1e878-bbc5-3f02-b917-b1ff75adab8e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4919205888,
"size" : 671744,
"uuid" : "99f6a3dc-9f85-3a3d-8ee5-4560b2308969",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4909350912,
"size" : 16384,
"uuid" : "143bfd0a-fbaa-3849-bbaa-9d3b2d44c38f",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4920074240,
"size" : 147456,
"uuid" : "d1f6d0b1-d05a-3cc7-8c15-0d72176e5bcb",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4922728448,
"size" : 1114112,
"uuid" : "aff872ee-6078-3910-b105-cc0517b99c83",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4912451584,
"size" : 32768,
"uuid" : "114c9a33-5736-3368-9202-8fbccd595edd",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4910067712,
"size" : 16384,
"uuid" : "05968841-a7ae-3fcd-965c-8cc9e98e0a41",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4918759424,
"size" : 278528,
"uuid" : "60db207e-61fc-34bd-b11c-5cfa79eea3b7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4924493824,
"size" : 393216,
"uuid" : "d2838c07-3bac-3b2d-87c3-72aded2e5165",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4925841408,
"size" : 655360,
"uuid" : "eb2b7b54-aae9-33c5-ad3a-429b3a4f72ad",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4927422464,
"size" : 737280,
"uuid" : "52bfa0ae-b59c-3f4e-8240-645c1a930cc1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4926611456,
"size" : 557056,
"uuid" : "d015dfe5-7214-33d8-bf58-350dd32c4521",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.0.dylib",
"name" : "libopenjp2.2.5.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4923908096,
"size" : 131072,
"uuid" : "181a76df-c680-311c-aaa6-6eeeb8854129",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.dylib",
"name" : "libz.1.3.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4924088320,
"size" : 163840,
"uuid" : "51065206-aff2-32dd-93c5-d6d05a6f5e35",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib",
"name" : "libxcb.1.1.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4925394944,
"size" : 245760,
"uuid" : "2f03407e-0f9b-3146-b009-33e0f793869a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4912549888,
"size" : 16384,
"uuid" : "adabaf7c-bc6a-3eab-8fbc-f3d8fdd20c3e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4922593280,
"size" : 16384,
"uuid" : "6471263b-077e-389e-bb71-0c6152f93a06",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4922433536,
"size" : 16384,
"uuid" : "ab1ede05-8390-3ffd-92d7-7ce53a7c9be2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4933484544,
"size" : 131072,
"uuid" : "ff530dfd-f9a0-3647-8791-e3141a233416",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4935606272,
"size" : 671744,
"uuid" : "3ff53eba-e1c5-3012-8833-8f274ca1f445",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4934729728,
"size" : 98304,
"uuid" : "b95403ec-ebee-307e-a234-a98fa49425bf",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4934975488,
"size" : 163840,
"uuid" : "aef34ee9-c864-3f86-9c23-674b05a8f622",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4947709952,
"size" : 704512,
"uuid" : "a4ad5b64-7236-3230-857c-bc3c882c9b69",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4925706240,
"size" : 49152,
"uuid" : "f299aa93-affb-3200-ba08-9d3d8c6da134",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4924366848,
"size" : 32768,
"uuid" : "4e4bafab-4516-3b13-9719-e3642c80791e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4925181952,
"size" : 32768,
"uuid" : "2e49f12e-2bd1-36ff-a452-6af1ad840335",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4946976768,
"size" : 163840,
"uuid" : "84c28449-2886-395e-a902-73f67264df32",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4947304448,
"size" : 180224,
"uuid" : "d98e7117-18dd-37b7-9c74-472d0c79861a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4927250432,
"size" : 32768,
"uuid" : "1936789e-b9b0-3e1f-8cfa-fc88f0803ad5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4925280256,
"size" : 32768,
"uuid" : "ada3a7a8-1026-3b4a-9d87-6fce8df2fb33",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4954345472,
"size" : 98304,
"uuid" : "7927d573-a75a-3483-b846-b34afb8cd28d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4925083648,
"size" : 32768,
"uuid" : "79131285-478a-3db6-a280-53666b87c3a7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4935303168,
"size" : 49152,
"uuid" : "6fa7f1f6-f0d8-3c40-bcba-c9efedd60ea4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4935204864,
"size" : 32768,
"uuid" : "db9371e6-1f91-3bb7-b809-279e47d8ddf6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4955074560,
"size" : 458752,
"uuid" : "9ae20c42-01c8-33fe-9659-3452efdaa18b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4935401472,
"size" : 32768,
"uuid" : "986394df-4589-3b8d-9ea9-f6f1e56f1b5e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4935483392,
"size" : 32768,
"uuid" : "1e969447-e94a-32a1-9213-d22fc6f91912",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4954558464,
"size" : 32768,
"uuid" : "5e0161ca-ceec-363f-8779-78f703b77183",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4955598848,
"size" : 245760,
"uuid" : "b664e91f-c9aa-3e4d-a93a-9600b9e093d2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4954640384,
"size" : 32768,
"uuid" : "ea65a913-faaa-3a98-9152-8f5cb46cefe2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4956454912,
"size" : 425984,
"uuid" : "c1d9cbcb-157d-3efb-b925-47d5b0aa636a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4954722304,
"size" : 32768,
"uuid" : "4555e0fe-0041-3b9d-a56b-13b66a6d3148",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4957597696,
"size" : 573440,
"uuid" : "607364f1-42f7-3d00-a4e8-3d3930973dee",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 4957368320,
"size" : 65536,
"uuid" : "5eaf78f9-49d0-30e2-a516-d53697b7344a",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4922658816,
"size" : 16384,
"uuid" : "136e83be-523c-3e0a-8ee9-ac44338f577c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5327454208,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 98304,
"uuid" : "a8633311-4cf5-328a-9409-8a6723be0656",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "60420.140.26.703.3"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5330067456,
"size" : 65536,
"uuid" : "5cfe15a5-c7e4-36db-be9c-4d4ef3728796",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5332877312,
"size" : 32768,
"uuid" : "20c4af3a-4b84-3cc8-aa82-b08768c1116d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5336416256,
"size" : 180224,
"uuid" : "8a2cb9a5-a78b-3570-85dd-db8d007fb652",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5336170496,
"size" : 81920,
"uuid" : "77e92d9f-9046-3830-af22-fd3e061a9760",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5336014848,
"size" : 32768,
"uuid" : "3b76dfeb-802d-3ce8-9151-7ec4ff5a682b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5337776128,
"size" : 409600,
"uuid" : "bb420b20-0ce5-3d6c-95cc-09f401a8b63d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5362319360,
"size" : 442368,
"uuid" : "4257e585-b0ce-343b-bd19-71ac7ffa0713",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5680738304,
"size" : 16384,
"uuid" : "67c108ea-3b9a-3731-a794-8ca4049035a3",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_sw.cpython-311-darwin.so",
"name" : "_sw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5680803840,
"size" : 16384,
"uuid" : "0cf88116-cc85-32ed-b523-593e852fc25f",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib",
"name" : "libalign_algs.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5681713152,
"size" : 16384,
"uuid" : "ce412e76-387f-357d-b7be-b4654bc453d4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/dssp\/_dssp.cpython-311-darwin.so",
"name" : "_dssp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5681422336,
"size" : 32768,
"uuid" : "6174b67e-2ac1-346b-ad21-d6fb32060963",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so",
"name" : "_nw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5722845184,
"size" : 32768,
"uuid" : "4cafbf15-47c9-3e93-abf0-7f8f01ea6b1d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703432929280,
"size" : 237568,
"uuid" : "e8790d29-4132-3edf-ab37-16fbd7cf0d66",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703433166848,
"size" : 49152,
"uuid" : "60b15e1f-39ea-33a1-8616-3af57dc1094a",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703431778304,
"size" : 557048,
"uuid" : "a720129c-c1cf-3e62-9d76-aa6fa0d31333",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703433363456,
"size" : 40944,
"uuid" : "982c4eec-b380-3c37-ab95-14150e14dd61",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703484809216,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 16814080,
"uuid" : "f66bd32d-b52d-3eff-8d5c-48d0f7189785",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2299.77.138"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703595933696,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3112954,
"uuid" : "1afba695-4d4c-3b3e-9911-92f50c585ba4",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703429648384,
"size" : 623536,
"uuid" : "2b649d59-89d8-3db6-9ba4-a6aecba42f6e",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 140703433580544,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 4837360,
"uuid" : "3435a4a4-d0f8-3399-b0ad-49c3635a0f61",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "1979.104"
}
],
"sharedCache" : {
"base" : 140703429025792,
"size" : 21474836480,
"uuid" : "774caf66-b420-37ec-a8ec-8d92014cbfbc"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 6720K 8 \nCG image 2032K 49 \nCG raster data 1072K 1 \nColorSync 264K 30 \nCoreAnimation 5616K 68 \nCoreGraphics 16K 3 \nCoreGraphics (reserved) 16K 2 reserved VM address space (unallocated)\nCoreUI image data 5256K 40 \nFoundation 32K 2 \nKernel Alloc Once 8K 1 \nMALLOC 1.5G 808 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)\nMach message 16K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 112K 28 \nStack 157.2M 29 \nStack Guard 56.0M 1 \nVM_ALLOCATE 288.6M 231 \nVM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 49.0M 774 \n__DATA_CONST 52.3M 401 \n__DATA_DIRTY 1812K 229 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 203.2M 151 \n__OBJC_RO 66.3M 1 \n__OBJC_RW 2013K 2 \n__TEXT 931.1M 779 \ndyld private memory 420K 4 \nmapped file 251.5M 66 \nshared memory 3032K 37 \n=========== ======= ======= \nTOTAL 3.7G 3769 \nTOTAL, minus reserved VM space 3.6G 3769 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "02eb6428faed1687b5d3b48a8b662f62b419b591",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "5fb4245a1bbfe8005e33a1e1",
"factorPackIds" : {
},
"deploymentId" : 240000021
},
{
"rolloutId" : "6425c75e4327780c10cc4252",
"factorPackIds" : {
"SIRI_HOME_AUTOMATION_INTENT_SELECTION_CACHE" : "642600a457e7664b1698eb32"
},
"deploymentId" : 240000004
}
],
"experiments" : [
{
"treatmentId" : "c47ab4cc-c9c3-4b5d-a87c-e2433ce02597",
"experimentId" : "6639bc6ba73d460582162323",
"deploymentId" : 400000006
},
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
}
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set2/RealSpaceRefine_107/Combine_W15_107_mod-
> coot-2.pdb
Chain information for Combine_W15_107_mod-coot-2.pdb #1
---
Chain | Description
B | No description available
D | No description available
E | No description available
H | No description available
L | No description available
> hide atoms
> show cartoons
> lighting simple
> open 3e6p
3e6p title:
Crystal structure of human meizothrombin desF1 [more info...]
Chain information for 3e6p #2
---
Chain | Description | UniProt
H | Prothrombin | THRB_HUMAN 16-247
L | Prothrombin | THRB_HUMAN 163-415
Non-standard residues in 3e6p #2
---
DFK —
D-phenylalanyl-N-[(1S)-4-{[(Z)-amino(imino)methyl]amino}-1-(chloroacetyl)butyl]-L-prolinamide
(D-phenylalanyl-prolyl-arginyl-chloromethane)
NA — sodium ion
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)
SO4 — sulfate ion
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Combine_W15_107_mod-coot-2.pdb, chain H (#1) with 3e6p, chain H
(#2), sequence alignment score = 1228.6
RMSD between 184 pruned atom pairs is 1.233 angstroms; (across all 251 pairs:
1.862)
> open "/Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set4
> /Combine_W15_set4.pdb"
Chain information for Combine_W15_set4.pdb #3
---
Chain | Description
B | No description available
D | No description available
E | No description available
F | No description available
H | No description available
L | No description available
M | No description available
> hide #!1 models
> hide #!2 models
> hide #!3 atoms
> show #!3 cartoons
> open
> /Users/boskostojanovski/Desktop/Phenix/RealSpaceRefine_112/Combine_W15_set4_real_space_refined_112.pdb
Chain information for Combine_W15_set4_real_space_refined_112.pdb #4
---
Chain | Description
B | No description available
D | No description available
E | No description available
F | No description available
H | No description available
L | No description available
M | No description available
> hide #!3 models
> hide #!4 atoms
> show #!4 cartoons
> show #!1 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!2 models
> close #1
> close #2
> close #3
> close #4
> open
> "/Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set3/Combined
> set/Phenix/RealSpaceRefine_111/Combine_W15_set3__real_space_refined_111.pdb"
Chain information for Combine_W15_set3__real_space_refined_111.pdb #1
---
Chain | Description
B | No description available
D | No description available
E | No description available
F | No description available
H | No description available
L | No description available
> hide atoms
> show cartoons
> lighting simple
> select /B
10735 atoms, 11027 bonds, 1 pseudobond, 1325 residues, 2 models selected
> delete atoms (#!1 & sel)
> delete bonds (#!1 & sel)
> select /D
1852 atoms, 1894 bonds, 234 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select /F
75 atoms, 74 bonds, 10 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select /E
676 atoms, 692 bonds, 90 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> open "/Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/starting
> map/comp_1348+1349_DEEP_W15.mrc"
Opened comp_1348+1349_DEEP_W15.mrc as #2, grid size 400,400,400, pixel 0.842,
shown at level -0.000637, step 2, values float32
> save /Users/boskostojanovski/Desktop/3e6p_fromset3.pdb relModel #2
> close #1
> open
> /Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set2/RealSpaceRefine_107/Combine_W15_107_mod-
> coot-2.pdb
Chain information for Combine_W15_107_mod-coot-2.pdb #1
---
Chain | Description
B | No description available
D | No description available
E | No description available
H | No description available
L | No description available
> hide atoms
> show cartoons
> hide #!2 models
> select /B
10735 atoms, 11027 bonds, 1 pseudobond, 1325 residues, 2 models selected
> delete atoms (#!1 & sel)
> delete bonds (#!1 & sel)
> select /D
1852 atoms, 1894 bonds, 234 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select /L
846 atoms, 867 bonds, 1 pseudobond, 107 residues, 2 models selected
> select /E
676 atoms, 692 bonds, 90 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> save "/Users/boskostojanovski/Desktop/MzDES For
> Refinements/3e6p_fromset2.pdb" relModel #2
> open
> "/Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set3/Combined
> set/Coot/Combine_W15_set3_-coot-0.pdb"
Combine_W15_set3_-coot-0.pdb title:
Crystal structure of human thrombin mutant S195A In complex with the
extracellular fragment of human PAR1 [more info...]
Chain information for Combine_W15_set3_-coot-0.pdb #3
---
Chain | Description | UniProt
B | prothrombin |
D | prothrombin |
E | prothrombin |
F | proteinase-activated receptor 1 | PAR1_HUMAN 33-57
H | No description available |
L | No description available |
Non-standard residues in Combine_W15_set3_-coot-0.pdb #3
---
BHD — (BHD)
> hide atoms
> show cartoons
> hide #!3 models
> show #!3 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> volume #2 step 1
> volume #2 level 0.1
> volume #2 color #b2b2b299
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!2 models
> open
> /Users/boskostojanovski/Desktop/Phenix/RealSpaceRefine_113/3e6p_fromset3_real_space_refined_113.pdb
Chain information for 3e6p_fromset3_real_space_refined_113.pdb #4
---
Chain | Description
H | No description available
L | No description available
> hide #!3 models
> show #!1 models
> color #4 #ff40ffff
> show #!3 models
> open
> "/Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set3/Combined
> set/Coot/Combine_W15_set3_-coot-1.pdb"
Combine_W15_set3_-coot-1.pdb title:
Crystal structure of human thrombin mutant S195A In complex with the
extracellular fragment of human PAR1 [more info...]
Chain information for Combine_W15_set3_-coot-1.pdb #5
---
Chain | Description | UniProt
B | prothrombin |
D | prothrombin |
E | prothrombin |
F | proteinase-activated receptor 1 | PAR1_HUMAN 33-57
H | No description available |
L | No description available |
Non-standard residues in Combine_W15_set3_-coot-1.pdb #5
---
BHD — (BHD)
> hide atoms
> show cartoons
> hide #!2 models
> hide #!3 models
> hide #!4 models
> show #!3 models
> open
> "/Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set3/Combined
> set/Combine_W15_set3_.pdb"
Combine_W15_set3_.pdb title:
Crystal structure of human thrombin mutant S195A In complex with the
extracellular fragment of human PAR1 [more info...]
Chain information for Combine_W15_set3_.pdb #6
---
Chain | Description | UniProt
B | prothrombin |
D | prothrombin |
E | prothrombin |
F | proteinase-activated receptor 1 | PAR1_HUMAN 33-57
H | No description available |
L | No description available |
Non-standard residues in Combine_W15_set3_.pdb #6
---
BHD — (BHD)
> hide #!1,3,5-6 atoms
> show #!1,3,5-6 cartoons
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!3 models
> hide #!5 models
> show #!2 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> show #!1,6 atoms
> style #!1,6 stick
Changed 19226 atom styles
> hide #!1,6 atoms
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> close #5
> close #4
> close #3
> hide #!6 models
> show #!6 models
> hide #!1 models
> ui tool show "Show Sequence Viewer"
> sequence chain #6/L
Alignment identifier is 6/L
> select #6/L:414G
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #6/L:414G-414L
51 atoms, 51 bonds, 6 residues, 1 model selected
> select #6/L:277
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #6/L:277-286,401,401A,401B,401C,401D,401E,401F,402-414L
347 atoms, 354 bonds, 42 residues, 1 model selected
> select ~sel & ##selected
16003 atoms, 16428 bonds, 3 pseudobonds, 1992 residues, 2 models selected
> delete atoms (#!6 & sel)
> delete bonds (#!6 & sel)
> show #!1 models
> select add #6
347 atoms, 354 bonds, 42 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.99863,-0.019385,-0.048518,13.994,0.018601,0.99969,-0.016561,-0.10043,0.048824,0.015636,0.99868,-12.119
> undo
> view matrix models #6,1,0,0,0.61941,0,1,0,1.3359,0,0,1,0.28046
> view matrix models
> #6,0.99955,-0.015978,-0.025472,8.9802,0.015556,0.99974,-0.016709,1.8513,0.025733,0.016305,0.99954,-7.6358
> view matrix models
> #6,0.99987,-0.013824,0.0080505,1.4956,0.01379,0.9999,0.0042047,-2.2161,-0.0081078,-0.0040932,0.99996,2.6223
> view matrix models
> #6,0.99987,-0.013824,0.0080505,1.7307,0.01379,0.9999,0.0042047,-2.1601,-0.0081078,-0.0040932,0.99996,2.7359
> show #!2 models
> hide #!6 models
> show #!6 models
> select subtract #6
Nothing selected
> hide #!6 models
> show #!6 models
> hide #!2 models
> ui tool show "Show Sequence Viewer"
> select add #1
2876 atoms, 2952 bonds, 2 pseudobonds, 358 residues, 2 models selected
> select subtract #1
Nothing selected
> select add #1
2876 atoms, 2952 bonds, 2 pseudobonds, 358 residues, 2 models selected
> select subtract #1
Nothing selected
> hide #!1 models
> show #!1 models
> close #1
> open
> /Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set2/RealSpaceRefine_107/Combine_W15_107_mod-
> coot-2.pdb
Chain information for Combine_W15_107_mod-coot-2.pdb #1
---
Chain | Description
B | No description available
D | No description available
E | No description available
H | No description available
L | No description available
> hide atoms
> show cartoons
> ui tool show "Show Sequence Viewer"
> sequence chain #1/L
Alignment identifier is 1/L
> select #1/L:414L
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/L:242-414L
289 atoms, 292 bonds, 1 pseudobond, 34 residues, 2 models selected
> select #1/L:414L
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/L:242-414L
289 atoms, 292 bonds, 1 pseudobond, 34 residues, 2 models selected
> select #1/L:414L
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/L:247-414L
247 atoms, 249 bonds, 1 pseudobond, 29 residues, 2 models selected
> select #1/L:240
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/L:240-242
27 atoms, 28 bonds, 3 residues, 1 model selected
> select #1/L:414K-414L
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/L:402-414L
211 atoms, 213 bonds, 25 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> hide #!1 models
> hide #!6 models
> open "/Users/boskostojanovski/Desktop/Models/W15/PDBs for
> Coot/PAR1-coot-3.pdb"
Summary of feedback from opening
/Users/boskostojanovski/Desktop/Models/W15/PDBs for Coot/PAR1-coot-3.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 THR F 34
LEU F 38 1 5
Start residue of secondary structure not found: SHEET 1 1 1 ASP F 39 PRO F 40
0
PAR1-coot-3.pdb title:
Crystal structure of human thrombin mutant S195A In complex with the
extracellular fragment of human PAR1 [more info...]
Chain information for PAR1-coot-3.pdb #3
---
Chain | Description | UniProt
F | proteinase-activated receptor 1 | PAR1_HUMAN 33-57
> show #!2 models
> hide #3 models
> show #!1 models
> hide #!2 models
> show #3 models
> show #!6 models
> show #!2 models
> combine #1,3,6
Remapping chain ID 'L' in Combine_W15_set3_.pdb #6 to 'M'
> hide #!6 models
> hide #3 models
> hide #!2 models
> show #!2 models
> save
> /Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set5/combine_W15_set5.pdb
> models #4 relModel #2
> close #2
> close #1
> close #3
> close #4
> close #6
> open
> /Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set5/combine_W15_set5.pdb
combine_W15_set5.pdb title:
Crystal structure of human thrombin mutant S195A In complex with the
extracellular fragment of human PAR1 [more info...]
Chain information for combine_W15_set5.pdb #1
---
Chain | Description | UniProt
B | prothrombin |
D | prothrombin |
E | prothrombin |
F | proteinase-activated receptor 1 | PAR1_HUMAN 33-57
H | No description available |
L | No description available |
M | No description available |
Non-standard residues in combine_W15_set5.pdb #1
---
BHD — (BHD)
> hide atoms
> show cartoons
> lighting simple
> open
> /Users/boskostojanovski/Desktop/Phenix/RealSpaceRefine_114/combine_W15_set5_real_space_refined_114.pdb
Chain information for combine_W15_set5_real_space_refined_114.pdb #2
---
Chain | Description
B | No description available
D | No description available
E | No description available
F | No description available
H | No description available
L | No description available
M | No description available
> hide atoms
> show cartoons
> hide #!2 models
> show #!2 models
> open "/Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/starting
> map/comp_1348+1349_DEEP_W15.mrc"
Opened comp_1348+1349_DEEP_W15.mrc as #3, grid size 400,400,400, pixel 0.842,
shown at level -0.000637, step 2, values float32
> volume #3 step 1
> volume #3 level 0.1
> volume #3 color #b2b2b299
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!2 atoms
> style #!2 stick
Changed 16350 atom styles
> hide #!2 atoms
> show #!2 atoms
> hide #!2 atoms
> open
> /Users/boskostojanovski/Desktop/DES_PTse_COOT/0.DEEP_W15/Combine_set5/Coot/combine_W15_set5_real_space_refined_114-coot-0.pdb
Chain information for combine_W15_set5_real_space_refined_114-coot-0.pdb #4
---
Chain | Description
B | No description available
D | No description available
E | No description available
F | No description available
H | No description available
L | No description available
M | No description available
> close #1
> hide #!2 models
> hide #!3 models
> hide #!4 atoms
> show #!4 cartoons
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.14.1
OpenGL renderer: AMD Radeon Pro 575 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac18,3
Processor Name: Quad-Core Intel Core i5
Processor Speed: 3.5 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 16 GB
System Firmware Version: 529.140.2.0.0
OS Loader Version: 577.140.2~22
SMC Version (system): 2.41f2
Software:
System Software Overview:
System Version: macOS 13.6.9 (22G830)
Kernel Version: Darwin 22.6.0
Time since boot: 19 days, 22 hours, 24 minutes
Graphics/Displays:
Radeon Pro 575:
Chipset Model: Radeon Pro 575
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x67df
Revision ID: 0x00c4
ROM Revision: 113-D000AA-931
VBIOS Version: 113-D0001A1P-025
EFI Driver Version: 01.00.931
Metal Support: Metal 2
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: Retina 5K (5120 x 2880)
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
LG UltraFine:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 201NTRLKF070
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 14 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 14 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
