![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 14 months ago
Closed 14 months ago
#15964 closed defect (nonchimerax)
Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.6.1-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x00007ff84699fdc0 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 248 in swap_buffers
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 556 in swap_buffers
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 202 in draw
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py", line 288 in render
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py", line 113 in _redraw
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 149 in invoke
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 248 in _activate
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 217 in activate
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 393 in activate_trigger
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 100 in draw_new_frame
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 150 in _redraw_timer_callback
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, chimerax.atom_search.ast, chimerax.chem_group._chem_group (total: 60)
{"app_name":"ChimeraX","timestamp":"2024-09-18 16:20:34.00 +0200","app_version":"1.8.0","slice_uuid":"194a3167-3db5-3029-8d22-1d742b826bb9","build_version":"1.8.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.6.1 (23G93)","roots_installed":0,"name":"ChimeraX","incident_id":"C9238B6C-0C10-41CB-927B-9C64F7767EFD"}
{
"uptime" : 870000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro15,2",
"coalitionID" : 122465,
"osVersion" : {
"train" : "macOS 14.6.1",
"build" : "23G93",
"releaseType" : "User"
},
"captureTime" : "2024-09-18 16:20:32.7602 +0200",
"codeSigningMonitor" : 0,
"incident" : "C9238B6C-0C10-41CB-927B-9C64F7767EFD",
"pid" : 19657,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-09-18 11:48:25.5600 +0200",
"procStartAbsTime" : 856502835302723,
"procExitAbsTime" : 872829728241986,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"2D1D3C45-E2CD-50DC-B3E4-890A9DF5387C","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "C9E08316-F481-AE51-0088-DBB74F890D4B",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 17015,
"bridgeVersion" : {"build":"21P6074","train":"8.6"},
"sleepWakeUUID" : "4E90044D-30F0-461D-949D-8EDEC89765CC",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"termination" : {"flags":0,"code":6,"namespace":"SIGNAL","indicator":"Abort trap: 6","byProc":"ChimeraX","byPid":19657},
"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
"asi" : {"libsystem_c.dylib":["abort() called"]},
"asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000002\n"],
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"r13":{"value":140272638932225},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":140704313114048,"symbolLocation":0,"symbol":"_main_thread"},"rsi":{"value":6},"r8":{"value":2},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":140704313114048,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":14757395258967641293},"r15":{"value":22},"rbx":{"value":6},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703183285686,"matchesCrashFrame":1},"rbp":{"value":140272593656336},"rsp":{"value":140272593656296},"r12":{"value":259},"rcx":{"value":140272593656296},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"id":10149285,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":32182,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":153},{"imageOffset":24253,"symbol":"pthread_kill","symbolLocation":262,"imageIndex":154},{"imageOffset":282792,"symbol":"raise","symbolLocation":24,"imageIndex":155},{"imageOffset":2540852,"symbol":"faulthandler_fatal_error","symbolLocation":388,"imageIndex":151},{"imageOffset":16349,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":156},{"imageOffset":0,"imageIndex":157},{"imageOffset":522873,"symbol":"abort","symbolLocation":126,"imageIndex":155},{"imageOffset":5423,"symbol":"gpusGenerateCrashLog","symbolLocation":157,"imageIndex":158},{"imageOffset":3074487,"symbol":"gpusKillClientExt","symbolLocation":9,"imageIndex":159},{"imageOffset":10822,"symbol":"gpusSubmitDataBuffers","symbolLocation":497,"imageIndex":158},{"imageOffset":97822,"symbol":"IntelCommandBuffer::getNew(GLDContextRec*)","symbolLocation":50,"imageIndex":159},{"imageOffset":97340,"symbol":"intelSubmitCommands","symbolLocation":171,"imageIndex":159},{"imageOffset":1825133,"symbol":"gldPresentFramebufferData","symbolLocation":103,"imageIndex":159},{"imageOffset":111769,"symbol":"glSwap_Exec","symbolLocation":105,"imageIndex":160},{"imageOffset":55499,"symbol":"CGLFlushDrawable","symbolLocation":59,"imageIndex":161},{"imageOffset":3553941,"symbol":"-[NSOpenGLContext flushBuffer]","symbolLocation":20,"imageIndex":162},{"imageOffset":510209,"imageIndex":83},{"imageOffset":3718884,"symbol":"QOpenGLContext::swapBuffers(QSurface*)","symbolLocation":212,"imageIndex":103},{"imageOffset":907919,"symbol":"meth_QOpenGLContext_swapBuffers(_object*, _object*)","symbolLocation":95,"imageIndex":100},{"imageOffset":1044954,"symbol":"cfunction_call","symbolLocation":90,"imageIndex":151},{"imageOffset":630769,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":151},{"imageOffset":1868407,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":61255,"imageIndex":151},{"imageOffset":1892992,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":151},{"imageOffset":648278,"symbol":"method_vectorcall","symbolLocation":454,"imageIndex":151},{"imageOffset":1299806,"symbol":"PyQtSlot::call(_object*, _object*) const","symbolLocation":46,"imageIndex":107},{"imageOffset":1299494,"symbol":"PyQtSlot::invoke(void**, _object*, void*, bool) const","symbolLocation":358,"imageIndex":107},{"imageOffset":1303781,"symbol":"PyQtSlotProxy::unislot(void**)","symbolLocation":85,"imageIndex":107},{"imageOffset":1303640,"symbol":"PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)","symbolLocation":56,"imageIndex":107},{"imageOffset":864566,"imageIndex":108},{"imageOffset":945370,"symbol":"QTimer::timerEvent(QTimerEvent*)","symbolLocation":202,"imageIndex":108},{"imageOffset":158218,"symbol":"sipQTimer::timerEvent(QTimerEvent*)","symbolLocation":122,"imageIndex":107},{"imageOffset":833621,"symbol":"QObject::event(QEvent*)","symbolLocation":101,"imageIndex":108},{"imageOffset":157834,"symbol":"sipQTimer::event(QEvent*)","symbolLocation":186,"imageIndex":107},{"imageOffset":49767,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":247,"imageIndex":102},{"imageOffset":53362,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":498,"imageIndex":102},{"imageOffset":1283381,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":229,"imageIndex":101},{"imageOffset":543530,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":170,"imageIndex":108},{"imageOffset":2187295,"symbol":"QTimerInfoList::activateTimers()","symbolLocation":1023,"imageIndex":108},{"imageOffset":90183,"imageIndex":83},{"imageOffset":508039,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__","symbolLocation":17,"imageIndex":163},{"imageOffset":507945,"symbol":"__CFRunLoopDoSource0","symbolLocation":157,"imageIndex":163},{"imageOffset":507380,"symbol":"__CFRunLoopDoSources0","symbolLocation":215,"imageIndex":163},{"imageOffset":502385,"symbol":"__CFRunLoopRun","symbolLocation":919,"imageIndex":163},{"imageOffset":499986,"symbol":"CFRunLoopRunSpecific","symbolLocation":557,"imageIndex":163},{"imageOffset":190985,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":164},{"imageOffset":190486,"symbol":"ReceiveNextEventCommon","symbolLocation":665,"imageIndex":164},{"imageOffset":189793,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":66,"imageIndex":164},{"imageOffset":258417,"symbol":"_DPSNextEvent","symbolLocation":880,"imageIndex":162},{"imageOffset":9779952,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":1273,"imageIndex":162},{"imageOffset":198021,"symbol":"-[NSApplication run]","symbolLocation":603,"imageIndex":162},{"imageOffset":93965,"imageIndex":83},{"imageOffset":583190,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":486,"imageIndex":108},{"imageOffset":545047,"symbol":"QCoreApplication::exec()","symbolLocation":119,"imageIndex":108},{"imageOffset":2261324,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":92,"imageIndex":101},{"imageOffset":1044954,"symbol":"cfunction_call","symbolLocation":90,"imageIndex":151},{"imageOffset":630769,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":151},{"imageOffset":1868407,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":61255,"imageIndex":151},{"imageOffset":1802218,"symbol":"PyEval_EvalCode","symbolLocation":282,"imageIndex":151},{"imageOffset":1779827,"symbol":"builtin_exec","symbolLocation":483,"imageIndex":151},{"imageOffset":1047348,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":68,"imageIndex":151},{"imageOffset":1868159,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":61007,"imageIndex":151},{"imageOffset":1892992,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":151},{"imageOffset":2512477,"symbol":"pymain_run_module","symbolLocation":253,"imageIndex":151},{"imageOffset":2511137,"symbol":"Py_RunMain","symbolLocation":2225,"imageIndex":151},{"imageOffset":2515163,"symbol":"pymain_main","symbolLocation":43,"imageIndex":151},{"imageOffset":2515114,"symbol":"Py_Main","symbolLocation":42,"imageIndex":151},{"imageOffset":15770,"symbol":"main","symbolLocation":122,"imageIndex":152},{"imageOffset":25413,"symbol":"start","symbolLocation":1909,"imageIndex":165}]},{"id":10149686,"name":"ThreadPoolServiceThread","threadState":{"r13":{"value":12297829382473034411},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140272633716992},"rsi":{"value":0},"r8":{"value":4},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553178757952},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":123145435409728},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703183297142},"rbp":{"value":123145435409712},"rsp":{"value":123145435409640},"r12":{"value":140272633717232},"rcx":{"value":123145435409640},"flavor":"x86_THREAD_STATE","rdi":{"value":11}},"frames":[{"imageOffset":43638,"symbol":"kevent64","symbolLocation":10,"imageIndex":153},{"imageOffset":75593716,"imageIndex":91},{"imageOffset":75593183,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75245773,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149687,"name":"ThreadPoolForegroundWorker","threadState":{"r13":{"value":17179869442},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869442},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":278189326729216},"r9":{"value":278189326729216},"r15":{"value":278189326729216},"rbx":{"value":123145443810608},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145443809936},"rsp":{"value":123145443809832},"r12":{"value":33000},"rcx":{"value":123145443809832},"flavor":"x86_THREAD_STATE","rdi":{"value":123145443810608}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75293834,"imageIndex":91},{"imageOffset":75297738,"imageIndex":91},{"imageOffset":75295997,"imageIndex":91},{"imageOffset":75295727,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149688,"name":"ThreadPoolBackgroundWorker","threadState":{"r13":{"value":17179869442},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869442},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":275990303473664},"r9":{"value":275990303473664},"r15":{"value":275990303473664},"rbx":{"value":123145452211504},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145452210832},"rsp":{"value":123145452210728},"r12":{"value":33000},"rcx":{"value":123145452210728},"flavor":"x86_THREAD_STATE","rdi":{"value":123145452211504}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75293834,"imageIndex":91},{"imageOffset":75297738,"imageIndex":91},{"imageOffset":75295853,"imageIndex":91},{"imageOffset":75295764,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149689,"name":"Chrome_IOThread","threadState":{"r13":{"value":12297829382473034411},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140272667789056},"rsi":{"value":0},"r8":{"value":3},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553171451456},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":123145460612384},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703183297142},"rbp":{"value":123145460612368},"rsp":{"value":123145460612296},"r12":{"value":140272667789056},"rcx":{"value":123145460612296},"flavor":"x86_THREAD_STATE","rdi":{"value":12}},"frames":[{"imageOffset":43638,"symbol":"kevent64","symbolLocation":10,"imageIndex":153},{"imageOffset":75593716,"imageIndex":91},{"imageOffset":75593183,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":48358146,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149690,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":264995187195904},"r9":{"value":264995187195904},"r15":{"value":264995187195904},"rbx":{"value":123145469013056},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145469012384},"rsp":{"value":123145469012280},"r12":{"value":0},"rcx":{"value":123145469012280},"flavor":"x86_THREAD_STATE","rdi":{"value":123145469013056}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75039155,"imageIndex":91},{"imageOffset":74666185,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149694,"name":"Chrome_InProcGpuThread","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":248502512779264},"r9":{"value":248502512779264},"r15":{"value":248502512779264},"rbx":{"value":123145502616640},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145502615968},"rsp":{"value":123145502615864},"r12":{"value":0},"rcx":{"value":123145502615864},"flavor":"x86_THREAD_STATE","rdi":{"value":123145502616640}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75039155,"imageIndex":91},{"imageOffset":74666185,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149695,"name":"Chrome_ChildIOThread","threadState":{"r13":{"value":12297829382473034411},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140272640703232},"rsi":{"value":0},"r8":{"value":1},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553117274992},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":123145511017760},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703183297142},"rbp":{"value":123145511017744},"rsp":{"value":123145511017672},"r12":{"value":140272640703344},"rcx":{"value":123145511017672},"flavor":"x86_THREAD_STATE","rdi":{"value":21}},"frames":[{"imageOffset":43638,"symbol":"kevent64","symbolLocation":10,"imageIndex":153},{"imageOffset":75593716,"imageIndex":91},{"imageOffset":75593183,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":122838530,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149696,"name":"CompositorTileWorker1","threadState":{"r13":{"value":2203318223616},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145519419392},"rsi":{"value":2203318223616},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":512},"r10":{"value":0},"r9":{"value":161},"r15":{"value":512},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145519419088},"rsp":{"value":123145519418936},"r12":{"value":0},"rcx":{"value":123145519418936},"flavor":"x86_THREAD_STATE","rdi":{"value":140272594157112}},"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":75462980,"imageIndex":91},{"imageOffset":113394117,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149697,"name":"ThreadPoolSingleThreadSharedForeground0","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":221014722084864},"r9":{"value":221014722084864},"r15":{"value":221014722084864},"rbx":{"value":123145527819568},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145527818896},"rsp":{"value":123145527818792},"r12":{"value":0},"rcx":{"value":123145527818792},"flavor":"x86_THREAD_STATE","rdi":{"value":123145527819568}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75293834,"imageIndex":91},{"imageOffset":75296343,"imageIndex":91},{"imageOffset":75296045,"imageIndex":91},{"imageOffset":75295784,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149704,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":226512280223744},"r9":{"value":226512280223744},"r15":{"value":226512280223744},"rbx":{"value":123145536220224},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145536219552},"rsp":{"value":123145536219448},"r12":{"value":0},"rcx":{"value":123145536219448},"flavor":"x86_THREAD_STATE","rdi":{"value":123145536220224}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75039155,"imageIndex":91},{"imageOffset":74666185,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149705,"name":"VizCompositorThread","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":229810815107072},"r9":{"value":229810815107072},"r15":{"value":229810815107072},"rbx":{"value":123145544621120},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145544620448},"rsp":{"value":123145544620344},"r12":{"value":0},"rcx":{"value":123145544620344},"flavor":"x86_THREAD_STATE","rdi":{"value":123145544621120}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75039155,"imageIndex":91},{"imageOffset":74666185,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149728,"name":"NetworkService","threadState":{"r13":{"value":12297829382473034411},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140272682252544},"rsi":{"value":0},"r8":{"value":2},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553160493152},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":123145553022304},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703183297142},"rbp":{"value":123145553022288},"rsp":{"value":123145553022216},"r12":{"value":140272682252768},"rcx":{"value":123145553022216},"flavor":"x86_THREAD_STATE","rdi":{"value":22}},"frames":[{"imageOffset":43638,"symbol":"kevent64","symbolLocation":10,"imageIndex":153},{"imageOffset":75593716,"imageIndex":91},{"imageOffset":75593183,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149729,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":285885908123648},"r9":{"value":285885908123648},"r15":{"value":285885908123648},"rbx":{"value":123145561422912},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145561422240},"rsp":{"value":123145561422136},"r12":{"value":0},"rcx":{"value":123145561422136},"flavor":"x86_THREAD_STATE","rdi":{"value":123145561422912}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75039155,"imageIndex":91},{"imageOffset":74666185,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149730,"name":"ThreadPoolSingleThreadForegroundBlocking1","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":288084931379200},"r9":{"value":288084931379200},"r15":{"value":288084931379200},"rbx":{"value":123145569824048},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145569823376},"rsp":{"value":123145569823272},"r12":{"value":0},"rcx":{"value":123145569823272},"flavor":"x86_THREAD_STATE","rdi":{"value":123145569824048}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75293834,"imageIndex":91},{"imageOffset":75297738,"imageIndex":91},{"imageOffset":75296093,"imageIndex":91},{"imageOffset":75295774,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149760,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":339761977884672},"r9":{"value":339761977884672},"r15":{"value":339761977884672},"rbx":{"value":123145580371008},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145580370336},"rsp":{"value":123145580370232},"r12":{"value":0},"rcx":{"value":123145580370232},"flavor":"x86_THREAD_STATE","rdi":{"value":123145580371008}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75039155,"imageIndex":91},{"imageOffset":74666185,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149802,"name":"com.apple.NSEventThread","threadState":{"r13":{"value":21592279046},"rax":{"value":268451845},"rflags":{"value":518},"cpu":{"value":0},"r14":{"value":2},"rsi":{"value":21592279046},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":8589934592},"r10":{"value":401334629040128},"r9":{"value":401334629040128},"r15":{"value":401334629040128},"rbx":{"value":123145423786080},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":518},"rip":{"value":140703183257742},"rbp":{"value":123145423785920},"rsp":{"value":123145423785816},"r12":{"value":4294967295},"rcx":{"value":123145423785816},"flavor":"x86_THREAD_STATE","rdi":{"value":123145423786080}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":508357,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":143,"imageIndex":163},{"imageOffset":502837,"symbol":"__CFRunLoopRun","symbolLocation":1371,"imageIndex":163},{"imageOffset":499986,"symbol":"CFRunLoopRunSpecific","symbolLocation":557,"imageIndex":163},{"imageOffset":1692316,"symbol":"_NSEventThread","symbolLocation":122,"imageIndex":162},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149835,"name":"MemoryInfra","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":721292512722944},"r9":{"value":721292512722944},"r15":{"value":721292512722944},"rbx":{"value":123145617181760},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145617181088},"rsp":{"value":123145617180984},"r12":{"value":0},"rcx":{"value":123145617180984},"flavor":"x86_THREAD_STATE","rdi":{"value":123145617181760}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75039155,"imageIndex":91},{"imageOffset":74666185,"imageIndex":91},{"imageOffset":75194449,"imageIndex":91},{"imageOffset":74879192,"imageIndex":91},{"imageOffset":75351720,"imageIndex":91},{"imageOffset":75352126,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149836,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":575057466228736},"r9":{"value":575057466228736},"r15":{"value":575057466228736},"rbx":{"value":123145625582896},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703183257742},"rbp":{"value":123145625582224},"rsp":{"value":123145625582120},"r12":{"value":0},"rcx":{"value":123145625582120},"flavor":"x86_THREAD_STATE","rdi":{"value":123145625582896}},"frames":[{"imageOffset":4238,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":153},{"imageOffset":63608,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":153},{"imageOffset":33144,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":153},{"imageOffset":4989,"symbol":"mach_msg","symbolLocation":19,"imageIndex":153},{"imageOffset":75634614,"imageIndex":91},{"imageOffset":75039302,"imageIndex":91},{"imageOffset":75293834,"imageIndex":91},{"imageOffset":75296343,"imageIndex":91},{"imageOffset":75295901,"imageIndex":91},{"imageOffset":75295804,"imageIndex":91},{"imageOffset":75466040,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}]},{"id":10149875,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":48402,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":166},{"imageOffset":108261782,"imageIndex":91},{"imageOffset":108267659,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":1099511630080},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145422180352},"rsi":{"value":1099511630080},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":256},"r10":{"value":0},"r9":{"value":160},"r15":{"value":256},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145422180128},"rsp":{"value":123145422179976},"r12":{"value":0},"rcx":{"value":123145422179976},"flavor":"x86_THREAD_STATE","rdi":{"value":105553168239264}}},{"id":10149876,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":48402,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":166},{"imageOffset":108261782,"imageIndex":91},{"imageOffset":108267659,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":1792},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145422716928},"rsi":{"value":1792},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":0},"r9":{"value":160},"r15":{"value":0},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145422716704},"rsp":{"value":123145422716552},"r12":{"value":0},"rcx":{"value":123145422716552},"flavor":"x86_THREAD_STATE","rdi":{"value":105553168239264}}},{"id":10149877,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":48402,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":166},{"imageOffset":108261782,"imageIndex":91},{"imageOffset":108267659,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":768},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145423253504},"rsi":{"value":768},"r8":{"value":5497558140928},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553168239200},"r9":{"value":4256},"r15":{"value":0},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145423253280},"rsp":{"value":123145423253128},"r12":{"value":0},"rcx":{"value":123145423253128},"flavor":"x86_THREAD_STATE","rdi":{"value":105553168239264}}},{"id":10149878,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":48402,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":166},{"imageOffset":108261782,"imageIndex":91},{"imageOffset":108267659,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":2199023258112},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145642909696},"rsi":{"value":2199023258112},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":512},"r10":{"value":0},"r9":{"value":160},"r15":{"value":512},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145642909472},"rsp":{"value":123145642909320},"r12":{"value":0},"rcx":{"value":123145642909320},"flavor":"x86_THREAD_STATE","rdi":{"value":105553168239264}}},{"id":10149879,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":48402,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":166},{"imageOffset":108261782,"imageIndex":91},{"imageOffset":108267659,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":1280},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145643446272},"rsi":{"value":1280},"r8":{"value":7696581396480},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553168239200},"r9":{"value":4256},"r15":{"value":0},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145643446048},"rsp":{"value":123145643445896},"r12":{"value":0},"rcx":{"value":123145643445896},"flavor":"x86_THREAD_STATE","rdi":{"value":105553168239264}}},{"id":10149880,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":48402,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":166},{"imageOffset":108261782,"imageIndex":91},{"imageOffset":108267659,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":1536},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145643982848},"rsi":{"value":1536},"r8":{"value":8796093024256},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553168239200},"r9":{"value":4256},"r15":{"value":0},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145643982624},"rsp":{"value":123145643982472},"r12":{"value":0},"rcx":{"value":123145643982472},"flavor":"x86_THREAD_STATE","rdi":{"value":105553168239264}}},{"id":10149881,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":48402,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":166},{"imageOffset":108261782,"imageIndex":91},{"imageOffset":108267659,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":1024},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145644519424},"rsi":{"value":1024},"r8":{"value":6597069768704},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553168239200},"r9":{"value":4256},"r15":{"value":0},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145644519200},"rsp":{"value":123145644519048},"r12":{"value":0},"rcx":{"value":123145644519048},"flavor":"x86_THREAD_STATE","rdi":{"value":105553168239264}}},{"id":10149882,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":48402,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":166},{"imageOffset":108261782,"imageIndex":91},{"imageOffset":108267659,"imageIndex":91},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":2048},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145645056000},"rsi":{"value":2048},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":0},"r9":{"value":160},"r15":{"value":0},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145645055776},"rsp":{"value":123145645055624},"r12":{"value":0},"rcx":{"value":123145645055624},"flavor":"x86_THREAD_STATE","rdi":{"value":105553168239264}}},{"id":10149920,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":3470047,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":131},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":2029702760314624},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145426472960},"rsi":{"value":2029702760314624},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":472576},"r10":{"value":0},"r9":{"value":160},"r15":{"value":472576},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145426472816},"rsp":{"value":123145426472664},"r12":{"value":0},"rcx":{"value":123145426472664},"flavor":"x86_THREAD_STATE","rdi":{"value":4663826896,"symbolLocation":80,"symbol":"thread_status"}}},{"id":10149921,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":3470047,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":131},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":2029702760314624},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145427009536},"rsi":{"value":2029702760314624},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":472576},"r10":{"value":0},"r9":{"value":160},"r15":{"value":472576},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145427009392},"rsp":{"value":123145427009240},"r12":{"value":0},"rcx":{"value":123145427009240},"flavor":"x86_THREAD_STATE","rdi":{"value":4663827024,"symbolLocation":208,"symbol":"thread_status"}}},{"id":10149922,"frames":[{"imageOffset":15418,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":153},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":154},{"imageOffset":3470047,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":131},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":154},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":154}],"threadState":{"r13":{"value":4294967552},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145583054848},"rsi":{"value":4294967552},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":0},"r9":{"value":160},"r15":{"value":0},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703183268922},"rbp":{"value":123145583054704},"rsp":{"value":123145583054552},"r12":{"value":0},"rcx":{"value":123145583054552},"flavor":"x86_THREAD_STATE","rdi":{"value":4663827152,"symbolLocation":336,"symbol":"thread_status"}}},{"id":10326776,"frames":[{"imageOffset":6848,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":154}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":1},"rsi":{"value":189979},"r8":{"value":409604},"cr2":{"value":0},"rdx":{"value":123145424338944},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":123145424862072},"rbx":{"value":123145424863232},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703183502016},"rbp":{"value":0},"rsp":{"value":123145424863232},"r12":{"value":5193733},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145424863232}}}],
"usedImages" : [
{
"source" : "P",
"arch" : "x86_64",
"base" : 4846174208,
"size" : 81920,
"uuid" : "34acef9d-ca82-3fc2-8719-453f3bf3da79",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/chem_group\/_chem_group.cpython-311-darwin.so",
"name" : "_chem_group.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5154746368,
"size" : 49152,
"uuid" : "5a8c2b45-6fbf-384e-aa16-53365b54f7fb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atom_search\/ast.cpython-311-darwin.so",
"name" : "ast.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5473591296,
"size" : 147456,
"uuid" : "a66bb1e2-ecf4-3220-9c8e-a465d9305940",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so",
"name" : "_elementpath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5486125056,
"size" : 4210688,
"uuid" : "08a0cdf4-85d3-328a-98ac-8a7ec48356eb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so",
"name" : "etree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5464756224,
"size" : 180224,
"uuid" : "6d0a4aa1-f80b-3e16-baed-3f694111a75d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5467783168,
"size" : 442368,
"uuid" : "9141612b-bf67-390f-8b66-18a585729cab",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5469163520,
"size" : 524288,
"uuid" : "58e1300b-c472-3863-8fc4-4eb27185cbbf",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5460643840,
"size" : 32768,
"uuid" : "3b76dfeb-802d-3ce8-9151-7ec4ff5a682b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5460463616,
"size" : 98304,
"uuid" : "ae16bb51-bedf-3c8a-9b96-5684b608789d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5460766720,
"size" : 49152,
"uuid" : "0e674aef-d74d-34e9-a46b-63ce1a6729b4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5462528000,
"size" : 49152,
"uuid" : "c84a9a90-56dd-385a-aad3-a15d44bc216b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5465341952,
"size" : 737280,
"uuid" : "85293474-c54e-32bd-967c-f9f9839646ae",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5461233664,
"size" : 131072,
"uuid" : "99497e49-7155-3c86-b62e-dd8a79f1be5d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so",
"name" : "_cmsgpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5460971520,
"size" : 131072,
"uuid" : "272f9886-859c-3c84-8ea4-2bde196ca08b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so",
"name" : "_serialize.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5460004864,
"size" : 212992,
"uuid" : "9ff84874-4ecd-3fed-ba32-23b23bfaaecc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5460316160,
"size" : 98304,
"uuid" : "3064d9b7-75d7-343e-bf98-036ded114223",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so",
"name" : "_version.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5112836096,
"size" : 32768,
"uuid" : "20c4af3a-4b84-3cc8-aa82-b08768c1116d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5110988800,
"size" : 65536,
"uuid" : "5cfe15a5-c7e4-36db-be9c-4d4ef3728796",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5094649856,
"size" : 16384,
"uuid" : "136e83be-523c-3e0a-8ee9-ac44338f577c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 5094182912,
"size" : 53248,
"uuid" : "e554b85a-6614-3883-83d8-8eb3bd70a202",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5094395904,
"size" : 32768,
"uuid" : "eca278d3-d60a-39de-8179-e4e3d7044450",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5093974016,
"size" : 32768,
"uuid" : "52133b8a-b7f2-307f-99eb-74e22691cf79",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5093875712,
"size" : 32768,
"uuid" : "0372cf7c-a608-3177-b1e1-bd312f0a6434",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5094084608,
"size" : 32768,
"uuid" : "cbbb200f-5258-33bb-baf8-e08d98ddc672",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5113126912,
"size" : 8765440,
"uuid" : "14ff39ad-fca1-3b61-ada4-f5f95bd02945",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5091688448,
"size" : 32768,
"uuid" : "24897911-1bb1-3eb1-99c4-dc57d4440d49",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5092798464,
"size" : 245760,
"uuid" : "535f7dfd-d62a-33b3-9e52-af14094c4e5e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5094879232,
"size" : 442368,
"uuid" : "7a23c3a8-9cd7-3b95-9f4c-fe861273501d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5092093952,
"size" : 622592,
"uuid" : "8fa53a40-5029-35c1-b403-de4b5ebc296b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5091590144,
"size" : 32768,
"uuid" : "587053e8-9ed2-37b5-bae3-52598b1c0ed9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5091995648,
"size" : 32768,
"uuid" : "6be87464-6bae-3acd-ba8a-0ad9c42d2192",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5093203968,
"size" : 589824,
"uuid" : "3b812afb-4558-3629-a105-54f0123a8756",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5091897344,
"size" : 32768,
"uuid" : "6665c7fa-5429-307c-ae72-f02b4663e991",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5091799040,
"size" : 32768,
"uuid" : "04424808-7083-3ca4-9997-8dae04f5e18a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5003296768,
"size" : 16384,
"uuid" : "5c82e5f4-7664-3325-95c1-a2286b531838",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5031550976,
"size" : 32768,
"uuid" : "9c20a913-80f2-3790-82d6-f5f257f40a80",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5016510464,
"size" : 98304,
"uuid" : "7927d573-a75a-3483-b846-b34afb8cd28d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5003067392,
"size" : 32768,
"uuid" : "ada3a7a8-1026-3b4a-9d87-6fce8df2fb33",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5002952704,
"size" : 32768,
"uuid" : "1936789e-b9b0-3e1f-8cfa-fc88f0803ad5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5016150016,
"size" : 180224,
"uuid" : "d98e7117-18dd-37b7-9c74-472d0c79861a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5004181504,
"size" : 163840,
"uuid" : "84c28449-2886-395e-a902-73f67264df32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5003198464,
"size" : 32768,
"uuid" : "2e49f12e-2bd1-36ff-a452-6af1ad840335",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5003386880,
"size" : 163840,
"uuid" : "fe32f21a-cd3a-3ad4-9176-dddbd203789a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5003935744,
"size" : 98304,
"uuid" : "b95403ec-ebee-307e-a234-a98fa49425bf",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5016813568,
"size" : 671744,
"uuid" : "9f323cc7-da32-3fe1-b98b-163a8b0bc4f6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4999970816,
"size" : 131072,
"uuid" : "72e8fb51-e1eb-3955-ad6f-f9d432bd89fd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5000630272,
"size" : 16384,
"uuid" : "ab1ede05-8390-3ffd-92d7-7ce53a7c9be2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5000564736,
"size" : 16384,
"uuid" : "e8200b4e-f282-3cd7-9be9-8f3798584047",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4999380992,
"size" : 393216,
"uuid" : "3d435819-60f1-382a-b0ff-03aa1fec22a9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5004550144,
"size" : 655360,
"uuid" : "de0a2e7d-b9a1-33f1-9bf1-e8db3a502cb9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5005320192,
"size" : 671744,
"uuid" : "5077f363-3598-3431-bc7b-2cfbf3a714d9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5006073856,
"size" : 557056,
"uuid" : "5375f006-b7eb-3be7-88de-a910b38e7627",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib",
"name" : "libopenjp2.2.5.2.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4989132800,
"size" : 131072,
"uuid" : "84f3a08c-6bf8-33d7-89c0-5e8026f4e202",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib",
"name" : "libz.1.3.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4996050944,
"size" : 163840,
"uuid" : "5070a345-658e-31a4-80b9-d06f9abe9d5b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.dylib",
"name" : "libxcb.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5003624448,
"size" : 245760,
"uuid" : "2f03407e-0f9b-3146-b009-33e0f793869a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4996329472,
"size" : 16384,
"uuid" : "2b102593-309d-3ad2-98ff-fd87e42302d8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5000171520,
"size" : 278528,
"uuid" : "6bf62b8d-952b-3c3e-87b6-67992b1c9e85",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4995985408,
"size" : 16384,
"uuid" : "83a52d52-e452-3db7-8c1f-eee3d4bbc071",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4988133376,
"size" : 32768,
"uuid" : "b7700fae-a522-3c9e-81c7-8301374c2b6e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5000724480,
"size" : 1114112,
"uuid" : "0cfdf335-42fa-36ab-845a-44fda5a4f103",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4990627840,
"size" : 147456,
"uuid" : "d1f6d0b1-d05a-3cc7-8c15-0d72176e5bcb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4988289024,
"size" : 16384,
"uuid" : "143bfd0a-fbaa-3849-bbaa-9d3b2d44c38f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4996415488,
"size" : 671744,
"uuid" : "99f6a3dc-9f85-3a3d-8ee5-4560b2308969",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4988837888,
"size" : 180224,
"uuid" : "cd62d8e3-6428-319c-b174-d861a467788d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4987207680,
"size" : 49152,
"uuid" : "f6ffe558-91c7-3148-a81a-e03bb00eac29",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4989333504,
"size" : 114688,
"uuid" : "60d71170-122f-3388-8946-9dc82b508714",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4987428864,
"size" : 458752,
"uuid" : "cd45a26e-b65b-3ce2-beb8-3b85f74e2cad",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4988362752,
"size" : 212992,
"uuid" : "06f666f8-e01d-3977-8588-cd8763539de2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978376704,
"size" : 16384,
"uuid" : "d0ba4ed3-33c4-30c0-9fb8-0fcdd129cd4a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4990906368,
"size" : 1196032,
"uuid" : "61f0a987-8fa6-31d7-9915-0429ef9f504e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4982288384,
"size" : 32768,
"uuid" : "d58debec-4cde-3edd-9365-e9ebb03fd2b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4987363328,
"size" : 16384,
"uuid" : "3edbdaff-bca7-3dde-878a-d25fb44e9018",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978294784,
"size" : 32768,
"uuid" : "9b9ef339-f44c-3452-b5b0-92e4c1cfabb7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978798592,
"size" : 16384,
"uuid" : "ed64b7f2-4c49-3dd2-ae71-a987d310a8d5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978733056,
"size" : 16384,
"uuid" : "82f64d2e-cca2-34b8-bb59-0743603ce84d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978520064,
"size" : 98304,
"uuid" : "65c5907a-9e69-3d89-a863-0f7df59fe19b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4982407168,
"size" : 393216,
"uuid" : "35eaab10-69c7-3234-bb9c-f3ec617bade8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978454528,
"size" : 16384,
"uuid" : "ab3e7bb1-b4dd-35a0-a44b-f87a59b1adbb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4812578816,
"size" : 16384,
"uuid" : "1fceb320-1415-384c-914b-89deb7181eee",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4812464128,
"size" : 49152,
"uuid" : "19fe4936-cd05-35cf-b67f-f07ddb83c195",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4804718592,
"size" : 65536,
"uuid" : "9b2e2c2e-1abb-329d-aeb2-9921c2085377",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978864128,
"size" : 180224,
"uuid" : "2eccca6e-b160-375e-979b-d1d174cf5497",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4814204928,
"size" : 163840,
"uuid" : "b955d9be-5646-38cb-aba8-4337ae17c16d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4813287424,
"size" : 655360,
"uuid" : "a9df58b1-89b1-36c8-9d9e-fe251bf025f2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4812664832,
"size" : 229376,
"uuid" : "e05fb3ee-5d42-3121-a19c-5ced50cb3132",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4596920320,
"size" : 32768,
"uuid" : "9d400ff9-e70a-351e-bb34-5259e39c88b8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4745236480,
"size" : 147456,
"uuid" : "34ad5a58-946c-3e72-bdbb-522e51148d3a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4803395584,
"size" : 475136,
"uuid" : "9513715b-6b36-3b31-8470-149dba6c1656",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4597035008,
"size" : 65536,
"uuid" : "e61f8860-5bfc-3097-919d-761e57850659",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4596690944,
"size" : 98304,
"uuid" : "c2859284-9c93-3dd9-a78b-839df778dfea",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4796203008,
"size" : 294912,
"uuid" : "5154fa08-ddcc-3174-a42d-4e333e150ee9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5174259712,
"size" : 183599104,
"uuid" : "af091873-5278-3492-8e76-7c22e65c04ac",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4814540800,
"size" : 4210688,
"uuid" : "1b342485-b5a8-3134-8fbe-a4e607e770f3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4795219968,
"size" : 425984,
"uuid" : "78a08e9f-03a8-3e55-b319-5d7390d883d3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4804894720,
"size" : 557056,
"uuid" : "17e7e0a2-1745-3a18-a3d2-87857777737e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4740927488,
"size" : 180224,
"uuid" : "de6e3816-a208-301f-a7fc-0bbbb64c78a8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4805648384,
"size" : 4292608,
"uuid" : "33075afc-2a8b-3528-b0dd-4a5b769a2f54",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4820291584,
"size" : 1146880,
"uuid" : "b57854a4-c721-36b4-830e-2fe9e929a811",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4810792960,
"size" : 458752,
"uuid" : "f7f96df9-e51a-3764-90a4-730a57198670",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4795858944,
"size" : 81920,
"uuid" : "a2d3acde-e0db-3d21-acc4-ebfa3db5fd5c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4741959680,
"size" : 1523712,
"uuid" : "8cf677f1-f820-300f-bbea-491cfe548a9b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4733751296,
"size" : 2867200,
"uuid" : "04d3e498-8e36-3f03-9aa5-8a19040cc57f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4796989440,
"size" : 4931584,
"uuid" : "6b647ba7-e77f-36aa-937c-028f9cb4875c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4784553984,
"size" : 7274496,
"uuid" : "57e18c1d-e3ae-37c5-ada4-dcc62718794e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4741255168,
"size" : 540672,
"uuid" : "8b52e419-6929-39c7-8f25-239bd787b9b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4514787328,
"size" : 98304,
"uuid" : "3a35763b-1c12-3805-b15b-6ffa69bd1f52",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4514598912,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 94208,
"uuid" : "ba32b0db-6798-3ff5-9b01-a42fb9e96317",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61123.141.1"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4592971776,
"size" : 1720320,
"uuid" : "d186fce2-169a-3875-8ca4-f2fcd55371cf",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4745719808,
"size" : 5373952,
"uuid" : "f4950342-54e3-3755-a88f-e2a6406c1fc3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4507250688,
"size" : 32768,
"uuid" : "b334e8fd-e63d-3cac-89e8-071a263d4818",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4512256000,
"size" : 147456,
"uuid" : "2c719e3d-a419-3692-a578-2819f3d838f6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482592768,
"size" : 16384,
"uuid" : "4161acf6-42c3-3364-aca8-8d14917132b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4511354880,
"size" : 770048,
"uuid" : "15252f8d-5c11-35f9-8f3b-b8c1dd465de8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4506697728,
"size" : 49152,
"uuid" : "9215cc4e-48d6-384f-aa4e-fa2ce81a8a1f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4507103232,
"size" : 81920,
"uuid" : "9e7a3d28-fb10-3335-bbe0-1f2a4e6e237a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4507549696,
"size" : 65536,
"uuid" : "b543ab2e-918d-3187-88cc-ed0733756a55",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4507402240,
"size" : 81920,
"uuid" : "5b3a56f1-c5e3-344a-86ff-810850013d80",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4506255360,
"size" : 327680,
"uuid" : "05826eca-98c1-3b93-b72a-5c523819d49a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4487737344,
"size" : 32768,
"uuid" : "1de3cb49-cee7-3aec-9885-69438bcbb671",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4487319552,
"size" : 32768,
"uuid" : "c8a36b29-9fb1-3c9e-bb16-9698b6a379d4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4589006848,
"size" : 2260992,
"uuid" : "9077f550-4289-3012-8803-cca73b9d943d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4506824704,
"size" : 196608,
"uuid" : "9de7ed17-62fe-3c59-a8e9-3d3074cb449e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4504555520,
"size" : 163840,
"uuid" : "188f02a8-df66-3e0c-8946-153af5eaba44",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4507766784,
"size" : 655360,
"uuid" : "f65b5844-4c12-381e-8af8-637620272103",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4504825856,
"size" : 81920,
"uuid" : "2c97d6ef-aec3-361d-bc4d-0dd7137ad6ed",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4504977408,
"size" : 163840,
"uuid" : "95ecdafc-7133-362d-9f9c-dd26ff543a5b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4487557120,
"size" : 81920,
"uuid" : "cc072b20-11ee-3eb4-b287-8393ef51db95",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4487864320,
"size" : 81920,
"uuid" : "79cd772e-9106-339a-acb7-ba43552b15a7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482527232,
"size" : 16384,
"uuid" : "6f069f98-51a6-3478-9053-9d1f2fbebd9b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4487122944,
"size" : 114688,
"uuid" : "79de93b8-7f0e-3adc-8fde-969984151905",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4489338880,
"size" : 4947968,
"uuid" : "fd4b95ff-f84a-34d3-939c-f932f374ddb9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4597239808,
"size" : 66404352,
"uuid" : "7048d1fd-b9a9-3f6a-b752-ae8be69f6c3f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4515094528,
"size" : 6565888,
"uuid" : "ae37c55e-f850-3cf7-86e4-bbd86809bc1d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482170880,
"size" : 319488,
"uuid" : "a1783d23-d187-3d92-ade7-2a80619e7485",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4487417856,
"size" : 69632,
"uuid" : "6d59656e-a224-3642-80b9-ca07ca06e7c1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482027520,
"size" : 16384,
"uuid" : "968f7d44-5fa3-31d9-8b22-92eb2206cc84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4488028160,
"size" : 1130496,
"uuid" : "4442f722-a049-33ee-8cfe-e5e288b44421",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481945600,
"size" : 32768,
"uuid" : "ce09d1ac-f6df-3770-9dda-8f52871a152d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482105344,
"size" : 16384,
"uuid" : "8d17df9f-a171-32fe-848a-1380ca2546d4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481028096,
"size" : 16384,
"uuid" : "1348d940-0f3a-37cb-9a27-37db7b4734d1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4480929792,
"size" : 32768,
"uuid" : "6333bf6e-f980-3714-b65f-a12997bfe10a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481863680,
"size" : 32768,
"uuid" : "dc4ae342-b3c4-3716-a530-b1568a67f912",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481781760,
"size" : 32768,
"uuid" : "4e6494eb-704b-3e1a-9d97-751ef9b2d06a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481716224,
"size" : 16384,
"uuid" : "de8dfc82-ec28-378b-b945-07e7671a35b1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481650688,
"size" : 16384,
"uuid" : "cc52d89b-b174-3a9a-94ae-0c556ec7b21b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481310720,
"size" : 196608,
"uuid" : "0fa75f51-66bf-3a60-a393-65ceea03012e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481245184,
"size" : 16384,
"uuid" : "4921b552-b90a-39c6-b791-14028366f5a0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4481146880,
"size" : 32768,
"uuid" : "6c0e3849-f845-3996-a69e-e956c62499ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4479660032,
"size" : 16384,
"uuid" : "52112d00-a676-3fba-b4d8-69e98fe5e2c3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4479512576,
"size" : 65536,
"uuid" : "ce1cdda7-c310-3834-8656-4829f8b0fa2a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4479766528,
"size" : 49152,
"uuid" : "c4d4107c-7508-3d61-88f1-4f1a33945090",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4497149952,
"CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 4030464,
"uuid" : "514efc82-c424-3863-84a8-e24ffd50343d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.4"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4477214720,
"CFBundleShortVersionString" : "1.8.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "194a3167-3db5-3029-8d22-1d742b826bb9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.8.0.0"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703183253504,
"size" : 241656,
"uuid" : "54b50613-cc4b-3ace-a9ec-919ea83d5e5f",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703183495168,
"size" : 49144,
"uuid" : "d70de43a-2804-340a-804c-5d316c1e013b",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703182102528,
"size" : 557048,
"uuid" : "d7acdb03-4453-3d57-9b53-9f338bca635d",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703183695872,
"size" : 45048,
"uuid" : "4ea5bbf7-8ce1-37ab-916b-d14ffd7d2b4b",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140707801870336,
"size" : 45048,
"uuid" : "6addefce-1267-354e-9b00-da1e792d8b05",
"path" : "\/System\/Library\/PrivateFrameworks\/GPUSupport.framework\/Versions\/A\/Libraries\/libGPUSupportMercury.dylib",
"name" : "libGPUSupportMercury.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 140712168173568,
"CFBundleShortVersionString" : "22.5.11",
"CFBundleIdentifier" : "com.apple.driver.AppleIntelKBLGraphicsGLDriver",
"size" : 15536112,
"uuid" : "88669d3b-bec7-32df-ae76-1828c7fb2cc4",
"path" : "\/System\/Library\/Extensions\/AppleIntelKBLGraphicsGLDriver.bundle\/Contents\/MacOS\/AppleIntelKBLGraphicsGLDriver",
"name" : "AppleIntelKBLGraphicsGLDriver",
"CFBundleVersion" : "22.0.5"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140712254091264,
"size" : 1507320,
"uuid" : "28530138-4bfd-3e68-930b-a672e2466119",
"path" : "\/System\/Library\/Frameworks\/OpenGL.framework\/Versions\/A\/Resources\/GLEngine.bundle\/GLEngine",
"name" : "GLEngine"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140712251887616,
"CFBundleShortVersionString" : "21.0.19",
"CFBundleIdentifier" : "com.apple.opengl",
"size" : 65528,
"uuid" : "b83396be-2df7-3619-ada6-3a265ff880e2",
"path" : "\/System\/Library\/Frameworks\/OpenGL.framework\/Versions\/A\/OpenGL",
"name" : "OpenGL",
"CFBundleVersion" : "21.0.19"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703241240576,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 21172216,
"uuid" : "d0e19a37-f677-32b5-b3d2-005e60b90f7f",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2487.70.105"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 140703183917056,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 4829181,
"uuid" : "c5e5acb6-9e44-3aa3-bd21-0a5b4a2eee5e",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2602"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703362613248,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 2732020,
"uuid" : "2aa738bf-9f72-3227-8bba-7eae7b9f080b",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703179776000,
"size" : 591904,
"uuid" : "18f658dd-20f3-324d-b7ac-8a9c60b574b3",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703182659584,
"size" : 503796,
"uuid" : "69eca28c-bfb7-35bf-ad4f-1bece712d239",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 140703179079680,
"size" : 25769803776,
"uuid" : "b8509d0f-c366-3716-9a03-efa00b40318a"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)\nWritable regions: Total=3.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.6G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 512K 4 \nActivity Tracing 256K 1 \nCG image 968K 64 \nCG raster data 8K 1 \nColorSync 252K 31 \nCoreAnimation 1272K 91 \nCoreGraphics 20K 4 \nCoreUI image data 5320K 43 \nFoundation 52K 2 \nIOKit 23.3M 3 \nKernel Alloc Once 8K 1 \nMALLOC 3.0G 2662 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMach message 16K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 120K 30 \nStack 150.7M 31 \nStack Guard 56.0M 1 \nVM_ALLOCATE 504.6M 577 \nVM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 45.1M 796 \n__DATA_CONST 53.3M 461 \n__DATA_DIRTY 1842K 230 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 212.1M 155 \n__OBJC_RO 71.9M 1 \n__OBJC_RW 2201K 2 \n__TEXT 1.0G 801 \ndyld private memory 32K 1 \nmapped file 559.0M 91 \nshared memory 2996K 28 \n=========== ======= ======= \nTOTAL 5.7G 6133 \nTOTAL, minus reserved VM space 5.6G 6133 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "e26d78a86743188f24c9d735493ecf4d8c2ab04d",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "648c94d4ebdf9e3e398fa708",
"factorPackIds" : {
"SIRI_UNDERSTANDING_NL_OVERRIDES" : "65a8104b6712a43e7922cab8"
},
"deploymentId" : 240000171
},
{
"rolloutId" : "645eb1d0417dab722a215927",
"factorPackIds" : {
},
"deploymentId" : 240000005
}
],
"experiments" : [
{
"treatmentId" : "c47ab4cc-c9c3-4b5d-a87c-e2433ce02597",
"experimentId" : "6639bc6ba73d460582162323",
"deploymentId" : 400000006
},
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
}
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/lau/Documentos/Ongoing/COP1/ChimeraX/COP!_open&closed&hy5ed.cxs
Log from Tue Sep 17 20:22:45 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/lau/Documentos/Ongoing/COP1/full_data_session.cxs format session
Log from Mon Sep 16 20:24:56 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/lau/Wigge Lab Dropbox/Wigge Lab's shared workspace/Lab
> Info/Manuscripts/COP1/COP1 2024/COP1-HY5 animation/ChimeraX/COP1_closed.cxs"
Log from Sat Sep 14 13:54:22 2024 Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_cop1/fold_cop1_model_0.cif"
Chain information for fold_cop1_model_0.cif #1
---
Chain | Description
A | .
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_cop1/fold_cop1_model_0.cif"
Chain information for fold_cop1_model_0.cif #2
---
Chain | Description
A | .
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A #2/A
Alignment identifier is 1
> select #1/A:10 #2/A:10
14 atoms, 12 bonds, 2 residues, 2 models selected
> select #1/A:10-11 #2/A:10-11
28 atoms, 28 bonds, 4 residues, 2 models selected
. [ID: 1] region 2 chains [10-11] RMSD: 0.000
> color sel red
> select #1/A:1 #2/A:1
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:1-9 #2/A:1-9
138 atoms, 138 bonds, 18 residues, 2 models selected
. [ID: 1] region 2 chains [1-9] RMSD: 0.000
> color sel orange
> select #1/A:12 #2/A:12
10 atoms, 8 bonds, 2 residues, 2 models selected
> select #1/A:12-19 #2/A:12-19
122 atoms, 124 bonds, 16 residues, 2 models selected
. [ID: 1] region 2 chains [12-19] RMSD: 0.000
> color sel orange
> select #1/A:20 #2/A:20
12 atoms, 10 bonds, 2 residues, 2 models selected
> select #1/A:20-675 #2/A:20-675
10396 atoms, 10588 bonds, 1312 residues, 2 models selected
. [ID: 1] region 2 chains [20-675] RMSD: 0.000
> color sel medium blue
> color sel #8aacffff
[Repeated 1 time(s)]
> color sel #89abffff
> color sel #88aaffff
> color sel #86a9ffff
> color sel #84a8ffff
> color sel #82a8ffff
> color sel #81a8ffff
> color sel #80a8ffff
[Repeated 1 time(s)]
> color sel #80a9ffff
> color sel #80abffff
> color sel #80acffff
> color sel #81aeffff
> color sel #81afffff
> color sel #81b0ffff
> color sel #81b1ffff
> color sel #82b2ffff
> color sel #83b3ffff
> color sel #83b4ffff
> color sel #84b5ffff
> color sel #84b6ffff
> color sel #84b7ffff
> color sel #85b8ffff
[Repeated 1 time(s)]
> color sel #86b9ffff
> color sel #87baffff
> color sel #88bbffff
> color sel #88bcffff
> color sel #89bdffff
> color sel #8bbeffff
> color sel #8dbeffff
> color sel #8fbfffff
> color sel #90c0ffff
[Repeated 1 time(s)]
> color sel #91c0ffff
> color sel #92c0ffff
> color sel #92bfffff
> color sel #94bfffff
[Repeated 1 time(s)]
> color sel #95bfffff
[Repeated 1 time(s)]
> color sel #97c0ffff
[Repeated 1 time(s)]
> color sel #98c0ffff
> color sel #99c0ffff
[Repeated 1 time(s)]
> color sel #9ac0ffff
[Repeated 1 time(s)]
> color sel #9bc0ffff
> color sel #9cbfffff
[Repeated 1 time(s)]
> color sel #9dbfffff
[Repeated 1 time(s)]
> color sel #9ebfffff
> color sel #9fbfffff
> color sel #a0bfffff
[Repeated 1 time(s)]
> color sel #a1bfffff
[Repeated 1 time(s)]
> color sel #a2bfffff
> color sel #a3beffff
> color sel #a4bdffff
[Repeated 1 time(s)]
> color sel #a4bcffff
> color sel #a7baffff
> color sel #acb6ffff
> color sel #aeb3ffff
> color sel #afb2ffff
> color sel #aeb1ffff
> color sel #adafffff
> color sel #adadffff
> color sel #acacffff
> color sel #acabffff
[Repeated 1 time(s)]
> color sel #acaaffff
[Repeated 1 time(s)]
> color sel #aba9ffff
> color sel #aba8ffff
[Repeated 1 time(s)]
> color sel #aaa7ffff
> color sel #aaa6ffff
> color sel #a9a4ffff
> color sel #a8a2ffff
> color sel #a7a1ffff
> color sel #a6a0ffff
> color sel #a59fffff
> color sel #a59effff
> color sel #a59dffff
> color sel #a49cffff
[Repeated 1 time(s)]
> color sel #a49bffff
> color sel #a49affff
> color sel #a39affff
[Repeated 2 time(s)]
> select clear
> set bgColor white
> select #1/A:12 #2/A:12
10 atoms, 8 bonds, 2 residues, 2 models selected
> select #1/A:12-24 #2/A:12-24
186 atoms, 188 bonds, 26 residues, 2 models selected
. [ID: 1] region 2 chains [12-24] RMSD: 0.000
> color sel cornflower blue
> select #1/A:1 #2/A:1
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:1-39 #2/A:1-39
550 atoms, 558 bonds, 78 residues, 2 models selected
. [ID: 1] region 2 chains [1-39] RMSD: 0.000
> select #1/A:40-41 #2/A:40-41
34 atoms, 32 bonds, 4 residues, 2 models selected
> select #1/A:8-41 #2/A:8-41
474 atoms, 482 bonds, 68 residues, 2 models selected
. [ID: 1] region 2 chains [8-41] RMSD: 0.000
> select #1/A:1 #2/A:1
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:1-40 #2/A:1-40
568 atoms, 576 bonds, 80 residues, 2 models selected
. [ID: 1] region 2 chains [1-40] RMSD: 0.000
> ui tool show "Color Actions"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color sel pink
[Repeated 2 time(s)]
> select clear
> select /A:1-40
568 atoms, 576 bonds, 80 residues, 2 models selected
> set bgColor black
> select clear
> select A/:1-40
Expected an objects specifier or a keyword
> select /A:1-40
568 atoms, 576 bonds, 80 residues, 2 models selected
> color sel yellow
> select clear
> select #1/A:1-40 #2/A:1-40
568 atoms, 576 bonds, 80 residues, 2 models selected
> select #1/A:10 #2/A:10
14 atoms, 12 bonds, 2 residues, 2 models selected
> select #1/A:10-11 #2/A:10-11
28 atoms, 28 bonds, 4 residues, 2 models selected
. [ID: 1] region 2 chains [10-11] RMSD: 0.000
> color sel red
> select clear
> surface
> transparency 60
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #1.1 models
> hide #!2 models
> show #!2 models
> hide #2.1 models
> show #2.1 models
> select /A:1-40
568 atoms, 576 bonds, 80 residues, 2 models selected
> color (#!2 & sel) #f4e90d66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4e90e66
> color (#!2 & sel) #f4ea1266
> color (#!2 & sel) #f4ea1566
> color (#!2 & sel) #f4ea1866
> color (#!2 & sel) #f4ea1e66
> color (#!2 & sel) #f4ea2166
> color (#!2 & sel) #f4eb2466
> color (#!2 & sel) #f4ef2d66
> color (#!2 & sel) #f4f43e66
> color (#!2 & sel) #f0f44866
> color (#!2 & sel) #eff44a66
> color (#!2 & sel) #f0f44c66
> color (#!2 & sel) #f0f44d66
> color (#!2 & sel) #eff44f66
> color (#!2 & sel) #ebf45d66
> color (#!2 & sel) #e6f47066
> color (#!2 & sel) #e6f47366
> color (#!2 & sel) #e6f47466
[Repeated 1 time(s)]
> color (#!2 & sel) #e7f47666
> color (#!2 & sel) #ebf48366
> color (#!2 & sel) #edf49366
> color (#!2 & sel) #eef49a66
> color (#!2 & sel) #eff49b66
> color (#!2 & sel) #eff49c66
> color (#!2 & sel) #f0f49d66
> color (#!2 & sel) #f0f49e66
> color (#!2 & sel) #f2f4a166
> color (#!2 & sel) #f3f4a366
> color (#!2 & sel) #f4f4a666
> color (#!2 & sel) #f4f3a766
> color (#!2 & sel) #f4f2a966
> color (#!2 & sel) #f4f0ad66
> color (#!2 & sel) #f4efaf66
> color (#!2 & sel) #f4efb066
> color (#!2 & sel) #f4edb266
> color (#!2 & sel) #f4ecb666
> color (#!2 & sel) #f4ebba66
> color (#!2 & sel) #f4ebbb66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4e9bd66
> color (#!2 & sel) #f4e9c066
> color (#!2 & sel) #f4e9c166
> color (#!2 & sel) #f4e8c466
> color (#!2 & sel) #f4e9c866
[Repeated 1 time(s)]
> color (#!2 & sel) #f4e9c766
> color (#!2 & sel) #f4eac666
> color (#!2 & sel) #f4ebc366
> color (#!2 & sel) #f4e9be66
> color (#!2 & sel) #f4e8b966
> color (#!2 & sel) #f4e7b566
> color (#!2 & sel) #f4e7b366
> color (#!2 & sel) #f4e6b066
> color (#!2 & sel) #f4e7ab66
> color (#!2 & sel) #f4e8a666
> color (#!2 & sel) #f4e89566
> color (#!2 & sel) #f4e57966
> color (#!2 & sel) #f4e46566
> color (#!2 & sel) #f4e46066
[Repeated 1 time(s)]
> color (#!2 & sel) #f4e45f66
> color (#!2 & sel) #f4e55f66
> color (#!2 & sel) #f4e65f66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4e75f66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4e85f66
> color (#!2 & sel) #f4e95f66
> color (#!2 & sel) #f4ea5f66
> color (#!2 & sel) #f4eb5f66
> color (#!2 & sel) #f4ec6066
> color (#!2 & sel) #f4ed6066
> color (#!2 & sel) #f4ed6166
> color (#!2 & sel) #f4ee6166
> color (#!2 & sel) #f4ef6266
> color (#!2 & sel) #f4f06366
> color (#!2 & sel) #f4f16366
> color (#!2 & sel) #f4f06666
> color (#!2 & sel) #f4ef6866
> color (#!2 & sel) #f4ee6a66
> color (#!2 & sel) #f4ed6c66
> color (#!2 & sel) #f4ed6d66
> color (#!2 & sel) #f4ed6f66
> color (#!2 & sel) #f4ee6f66
> color (#!2 & sel) #f4ef7166
> color (#!2 & sel) #f4ef7366
> color (#!2 & sel) #f4ef7466
> color (#!2 & sel) #f4ee7766
> color (#!2 & sel) #f4ee7966
> color (#!2 & sel) #f4ed7c66
> color (#!2 & sel) #f4ee8266
> color (#!2 & sel) #f4ee8666
> color (#!2 & sel) #f4ef8a66
> color (#!2 & sel) #f4ef8b66
> color (#!2 & sel) #f4ef8c66
> color (#!2 & sel) #f4ee8d66
> color (#!2 & sel) #f4ef8e66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4ef9066
> color (#!2 & sel) #f4ef9266
[Repeated 1 time(s)]
> color (#!2 & sel) #f4f09366
[Repeated 1 time(s)]
> color (#!2 & sel) #f4f09466
> color (#!2 & sel) #f4f09566
[Repeated 1 time(s)]
> color (#!2 & sel) #f4f19666
[Repeated 1 time(s)]
> color (#!2 & sel) #f4f19766
> color (#!2 & sel) #f4f09966
> color (#!2 & sel) #f4f19966
> color (#!2 & sel) #f4f19a66
> color (#!2 & sel) #f4f19b66
> color (#!2 & sel) #f4f19c66
> color (#!2 & sel) #f4f19d66
> color (#!2 & sel) #f4f19e66
> color (#!2 & sel) #f4f19f66
> color (#!2 & sel) #f4f2a166
> color (#!2 & sel) #f4f3a266
> color (#!2 & sel) #f4f3a366
> color (#!2 & sel) #f4f3a466
> color (#!2 & sel) #f4f4a466
> color (#!2 & sel) #f4f4a566
> color (#!2 & sel) #f3f4a566
> color (#!2 & sel) #f2f4a266
> color (#!2 & sel) #f1f4a066
> color (#!2 & sel) #f1f49d66
> color (#!2 & sel) #f1f49c66
> color (#!2 & sel) #f1f49b66
> color (#!2 & sel) #f0f49966
> color (#!2 & sel) #f0f49866
> color (#!2 & sel) #eff49666
> color (#!2 & sel) #edf49366
> color (#!2 & sel) #ecf49166
> color (#!2 & sel) #ecf49066
[Repeated 3 time(s)]
> color (#!2 & sel) #ecf48f66
> color (#!2 & sel) #edf48f66
> color (#!2 & sel) #eef48e66
> color (#!2 & sel) #eff48e66
> color (#!2 & sel) #f0f48e66
[Repeated 1 time(s)]
> color (#!2 & sel) #f1f48e66
> color (#!2 & sel) #f2f48e66
> color (#!2 & sel) #f3f48e66
> color (#!2 & sel) #f4f48f66
> color (#!2 & sel) #f4f38e66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4f28e66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4f28f66
> select /A:1-40
568 atoms, 576 bonds, 80 residues, 2 models selected
> select #1/A:10 #2/A:10
14 atoms, 12 bonds, 2 residues, 2 models selected
> select #1/A:10-11 #2/A:10-11
28 atoms, 28 bonds, 4 residues, 2 models selected
. [ID: 1] region 2 chains [10-11] RMSD: 0.000
> color (#!2 & sel) #f4452d66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4472b66
[Repeated 1 time(s)]
> color (#!2 & sel) #f4482b66
> color (#!2 & sel) #f44a2b66
> color (#!2 & sel) #f4572e66
> color (#!2 & sel) #f4643166
> color (#!2 & sel) #f4663266
> color (#!2 & sel) #f4673166
> color (#!2 & sel) #f4693066
> color (#!2 & sel) #f4682c66
> color (#!2 & sel) #f4672966
> color (#!2 & sel) #f4662866
> color (#!2 & sel) #f4652766
> color (#!2 & sel) #f4642666
> color (#!2 & sel) #f4632566
> color (#!2 & sel) #f4622466
> color (#!2 & sel) #f4602266
> color (#!2 & sel) #f45f2066
> color (#!2 & sel) #f45e2066
> color (#!2 & sel) #f45d1f66
[Repeated 1 time(s)]
> color (#!2 & sel) #f45c1e66
> color (#!2 & sel) #f45b1d66
> select clear
> transparency #2 30
> transparency #2 90
> transparency #2 30
> transparency #2 40
> select /A:368-619
4014 atoms, 4106 bonds, 504 residues, 2 models selected
> select /A:368-675
4858 atoms, 4968 bonds, 616 residues, 2 models selected
> color (#!2 & sel) #f45b1a66
> color (#!2 & sel) #f45c1b66
> color (#!2 & sel) #f4723166
> color (#!2 & sel) #f48f4e66
> color (#!2 & sel) #f4935266
> color (#!2 & sel) #f4945366
> color (#!2 & sel) #f4995e66
> color (#!2 & sel) #f49e6b66
> color (#!2 & sel) #f49d6c66
> color (#!2 & sel) #f49c6d66
> color (#!2 & sel) #f49d7b66
> color (#!2 & sel) #f4a09266
> color (#!2 & sel) #f49d9466
> color (#!2 & sel) #f49b9466
> color (#!2 & sel) #f4999466
> color (#!2 & sel) #f4a3ad66
> color (#!2 & sel) #f4b0e066
> color (#!2 & sel) #f4afe766
> color (#!2 & sel) #f4aee866
> color (#!2 & sel) #f4adea66
> color (#!2 & sel) #e6a4f466
> color (#!2 & sel) #c58ef466
> color (#!2 & sel) #c089f466
> color (#!2 & sel) #bf88f466
> color (#!2 & sel) #be86f466
> color (#!2 & sel) #b07af466
> color (#!2 & sel) #8f60f466
> color (#!2 & sel) #8b5cf466
> color (#!2 & sel) #895af466
> color (#!2 & sel) #885af466
> color (#!2 & sel) #7042f466
> color (#!2 & sel) #6033f466
> color (#!2 & sel) #6032f466
> color (#!2 & sel) #6033f466
> color (#!2 & sel) #6435f466
> color (#!2 & sel) #6637f466
> color (#!2 & sel) #6b39f466
> color (#!2 & sel) #6c3af466
> color (#!2 & sel) #6d3bf466
> color (#!2 & sel) #6e3cf466
> color (#!2 & sel) #6f3cf466
> color (#!2 & sel) #713ff466
> color (#!2 & sel) #7541f466
> color (#!2 & sel) #7943f466
> color (#!2 & sel) #7c44f466
> color (#!2 & sel) #7e44f466
> color (#!2 & sel) #8145f466
> color (#!2 & sel) #8346f466
> color (#!2 & sel) #914ff466
> color (#!2 & sel) #9350f466
> color (#!2 & sel) #9551f466
> color (#!2 & sel) #9751f466
> color (#!2 & sel) #9851f466
> color (#!2 & sel) #9a51f466
> color (#!2 & sel) #9d51f466
> color (#!2 & sel) #9f51f466
> color (#!2 & sel) #a051f466
[Repeated 1 time(s)]
> color (#!2 & sel) #9456f466
> color (#!2 & sel) #7a5ef466
> color (#!2 & sel) #5a5af466
> color (#!2 & sel) #4e66f466
> color (#!2 & sel) #3c75f466
> color (#!2 & sel) #307ff466
> color (#!2 & sel) #248cf466
> color (#!2 & sel) #1c95f466
> color (#!2 & sel) #199bf466
> color (#!2 & sel) #1a9df466
> color (#!2 & sel) #1a9ef466
> color (#!2 & sel) #1b9ff466
> color (#!2 & sel) #1f9ff466
> color (#!2 & sel) #229ef466
> color (#!2 & sel) #259af466
> color (#!2 & sel) #2697f466
> color (#!2 & sel) #2794f466
> color (#!2 & sel) #2893f466
> color (#!2 & sel) #2891f466
> color (#!2 & sel) #2990f466
> color (#!2 & sel) #298ff466
> color (#!2 & sel) #298ef466
> color (#!2 & sel) #298cf466
> color (#!2 & sel) #298bf466
> color (#!2 & sel) #298af466
> color (#!2 & sel) #2b89f466
> color (#!2 & sel) #2c87f466
> color (#!2 & sel) #2e86f466
> color (#!2 & sel) #2f85f466
> color (#!2 & sel) #3084f466
> color (#!2 & sel) #3c81f466
> color (#!2 & sel) #4e78f466
> color (#!2 & sel) #586df466
> color (#!2 & sel) #6a63f466
> color (#!2 & sel) #8366f466
> color (#!2 & sel) #8e67f466
> color (#!2 & sel) #9566f466
> color (#!2 & sel) #9666f466
> color (#!2 & sel) #9964f466
> color (#!2 & sel) #9a62f466
> color (#!2 & sel) #9d5ff466
> color (#!2 & sel) #9f5df466
> color (#!2 & sel) #a05bf466
> color (#!2 & sel) #a059f466
> color (#!2 & sel) #a159f466
> color (#!2 & sel) #a158f466
> color (#!2 & sel) #a255f466
[Repeated 1 time(s)]
> color (#!2 & sel) #a253f466
> color (#!2 & sel) #a450f466
> color (#!2 & sel) #a64bf466
> color (#!2 & sel) #a848f466
> color (#!2 & sel) #a846f466
> color (#!2 & sel) #a945f466
> color (#!2 & sel) #a944f466
> color (#!2 & sel) #a841f466
> color (#!2 & sel) #a93ff466
> color (#!2 & sel) #aa3df466
> color (#!2 & sel) #aa38f466
> color (#!2 & sel) #ad33f466
> color (#!2 & sel) #ac32f466
[Repeated 1 time(s)]
> color (#!2 & sel) #ac31f466
> color (#!2 & sel) #ab30f466
[Repeated 1 time(s)]
> color (#!2 & sel) #ab2ff466
> color (#!2 & sel) #aa2ef466
> color (#!2 & sel) #a92df466
[Repeated 1 time(s)]
> color (#!2 & sel) #a92cf466
> color (#!2 & sel) #a82bf466
> color (#!2 & sel) #a729f466
> color (#!2 & sel) #a627f466
> color (#!2 & sel) #a525f466
> color (#!2 & sel) #a524f466
> color (#!2 & sel) #a424f466
> color (#!2 & sel) #a222f466
> color (#!2 & sel) #a01ff466
> color (#!2 & sel) #9e1df466
> color (#!2 & sel) #9d1cf466
> color (#!2 & sel) #9b1bf466
> color (#!2 & sel) #9818f466
> color (#!2 & sel) #9617f466
> color (#!2 & sel) #9516f466
> color (#!2 & sel) #9316f466
> color (#!2 & sel) #9214f466
> color (#!2 & sel) #8e13f466
> color (#!2 & sel) #8910f466
> color (#!2 & sel) #870ff466
[Repeated 1 time(s)]
> color (#!2 & sel) #860ff466
> color (#!2 & sel) #7f0cf466
> color (#!2 & sel) #7a08f466
> color (#!2 & sel) #7907f466
> color (#!2 & sel) #7502f466
> color (#!2 & sel) #7400f466
> color (#!2 & sel) #7100f466
> color (#!2 & sel) #6e00f466
> color (#!2 & sel) #6500f466
> color (#!2 & sel) #6200f466
> color (#!2 & sel) #5f00f466
> color (#!2 & sel) #5300f466
> color (#!2 & sel) #4700f466
> color (#!2 & sel) #4400f466
> color (#!2 & sel) #4100f466
> color (#!2 & sel) #3e00f466
> color (#!2 & sel) #3b00f466
> color (#!2 & sel) #3800f466
> color (#!2 & sel) #3500f466
> color (#!2 & sel) #3200f466
[Repeated 1 time(s)]
> color (#!2 & sel) #3300f466
> color (#!2 & sel) #3400f466
> color (#!2 & sel) #3700f466
> color (#!2 & sel) #3b00f466
> color (#!2 & sel) #3e00f466
> color (#!2 & sel) #4200f466
> color (#!2 & sel) #4700f466
> color (#!2 & sel) #5100f466
> color (#!2 & sel) #5900f466
> color (#!2 & sel) #6201f466
> color (#!2 & sel) #6a02f466
> color (#!2 & sel) #6f02f466
> color (#!2 & sel) #7502f466
> color (#!2 & sel) #7a04f466
> color (#!2 & sel) #7c06f466
> color (#!2 & sel) #7f0af466
> color (#!2 & sel) #850ff466
> color (#!2 & sel) #8a14f466
> color (#!2 & sel) #961df466
> color (#!2 & sel) #9b21f466
> color (#!2 & sel) #9d22f466
> color (#!2 & sel) #9d23f466
> color (#!2 & sel) #9e25f466
> color (#!2 & sel) #a22df466
> color (#!2 & sel) #a32ff466
> color (#!2 & sel) #a532f466
> color (#!2 & sel) #a83af466
> color (#!2 & sel) #ab41f466
> color (#!2 & sel) #ad45f466
> color (#!2 & sel) #b04bf466
> color (#!2 & sel) #b24ef466
> color (#!2 & sel) #b350f466
> color (#!2 & sel) #b656f466
> color (#!2 & sel) #b758f466
> color (#!2 & sel) #b85af466
> color (#!2 & sel) #b95ff466
> color (#!2 & sel) #b860f466
> color (#!2 & sel) #b963f466
> color (#!2 & sel) #b967f466
> color (#!2 & sel) #b96af466
> color (#!2 & sel) #ba6df466
> color (#!2 & sel) #b96ef466
> color (#!2 & sel) #b96ff466
> color (#!2 & sel) #bb72f466
> color (#!2 & sel) #bc75f466
> color (#!2 & sel) #bd76f466
> color (#!2 & sel) #be78f466
> color (#!2 & sel) #bf7bf466
> color (#!2 & sel) #c080f466
> color (#!2 & sel) #c082f466
> color (#!2 & sel) #c185f466
> color (#!2 & sel) #c288f466
> color (#!2 & sel) #c289f466
> color (#!2 & sel) #c28af466
> color (#!2 & sel) #c38cf466
> color (#!2 & sel) #c48ef466
[Repeated 1 time(s)]
> color (#!2 & sel) #c58ff466
> color (#!2 & sel) #c691f466
> color (#!2 & sel) #c692f466
> color (#!2 & sel) #c795f466
> color (#!2 & sel) #c798f466
> color (#!2 & sel) #c899f466
[Repeated 1 time(s)]
> color (#!2 & sel) #c89bf466
> color (#!2 & sel) #c99ef466
> color (#!2 & sel) #ca9ff466
> color (#!2 & sel) #caa0f466
[Repeated 1 time(s)]
> color (#!2 & sel) #caa1f466
> color (#!2 & sel) #cba2f466
> color (#!2 & sel) #cba3f466
> color (#!2 & sel) #cca4f466
> color (#!2 & sel) #cca5f466
> color (#!2 & sel) #cda6f466
> color (#!2 & sel) #cda7f466
> color (#!2 & sel) #cda8f466
> color (#!2 & sel) #cea9f466
[Repeated 1 time(s)]
> color (#!2 & sel) #cdaaf466
> color (#!2 & sel) #cbaaf466
> color (#!2 & sel) #cba9f466
> color (#!2 & sel) #c9a9f466
> color (#!2 & sel) #c7a8f466
> color (#!2 & sel) #c5a8f466
> color (#!2 & sel) #c3a8f466
> color (#!2 & sel) #c2a8f466
> color (#!2 & sel) #c0a7f466
> color (#!2 & sel) #bda6f466
> color (#!2 & sel) #bba6f466
> color (#!2 & sel) #b8a5f466
> color (#!2 & sel) #b7a5f466
[Repeated 1 time(s)]
> color (#!2 & sel) #b6a4f466
> color (#!2 & sel) #b5a4f466
> color (#!2 & sel) #b4a4f466
> color (#!2 & sel) #b2a4f466
> color (#!2 & sel) #b2a3f466
> color (#!2 & sel) #b1a3f466
> color (#!2 & sel) #b0a3f466
> color (#!2 & sel) #afa3f466
> color (#!2 & sel) #ada2f466
> color (#!2 & sel) #aba2f466
> color (#!2 & sel) #aaa1f466
> color (#!2 & sel) #a8a0f466
> color (#!2 & sel) #a7a0f466
> color (#!2 & sel) #a59ff466
> color (#!2 & sel) #a49ff466
> color (#!2 & sel) #a29ef466
> color (#!2 & sel) #a19ef466
> color (#!2 & sel) #9e9df466
> color (#!2 & sel) #9c9cf466
> color (#!2 & sel) #9b9bf466
> color (#!2 & sel) #999cf466
> color (#!2 & sel) #979cf466
> color (#!2 & sel) #979bf466
> color (#!2 & sel) #969bf466
> color (#!2 & sel) #959cf466
> color (#!2 & sel) #919af466
> color (#!2 & sel) #8e99f466
> color (#!2 & sel) #8c98f466
> color (#!2 & sel) #8a97f466
> color (#!2 & sel) #8897f466
> color (#!2 & sel) #8797f466
> color (#!2 & sel) #8696f466
> color (#!2 & sel) #8596f466
[Repeated 1 time(s)]
> color (#!2 & sel) #8495f466
> color (#!2 & sel) #8395f466
> color (#!2 & sel) #8195f466
> color (#!2 & sel) #8094f466
> color (#!2 & sel) #7f94f466
> color (#!2 & sel) #7e94f466
> color (#!2 & sel) #7d94f466
[Repeated 1 time(s)]
> color (#!2 & sel) #7b94f466
> color (#!2 & sel) #7a94f466
> color (#!2 & sel) #7994f466
> color (#!2 & sel) #7893f466
> color (#!2 & sel) #7793f466
> color (#!2 & sel) #7693f466
> color (#!2 & sel) #7593f466
[Repeated 2 time(s)]
> color (#!2 & sel) #7592f366
> color (#!2 & sel) #7492f266
> color (#!2 & sel) #7491f166
[Repeated 1 time(s)]
> color (#!2 & sel) #7391f066
[Repeated 1 time(s)]
> color (#!2 & sel) #7390ef66
[Repeated 1 time(s)]
> color (#!2 & sel) #7290ee66
> color (#!2 & sel) #728fed66
[Repeated 1 time(s)]
> color (#!2 & sel) #728eec66
> color (#!2 & sel) #718eec66
[Repeated 1 time(s)]
> color (#!2 & sel) #718eeb66
> color (#!2 & sel) #718deb66
> color (#!2 & sel) #708ce866
> color (#!2 & sel) #6e8be666
> color (#!2 & sel) #6d89e466
> color (#!2 & sel) #6d88e266
> color (#!2 & sel) #6984db66
> color (#!2 & sel) #657fd266
> color (#!2 & sel) #617aca66
> color (#!2 & sel) #5f77c566
> color (#!2 & sel) #5e76c466
> color (#!2 & sel) #5e76c366
> color (#!2 & sel) #5c73bf66
> color (#!2 & sel) #5a71bc66
> color (#!2 & sel) #586eb666
> color (#!2 & sel) #566bb266
> color (#!2 & sel) #556bb266
[Repeated 1 time(s)]
> color (#!2 & sel) #566cb366
> color (#!2 & sel) #576eb666
> color (#!2 & sel) #596fb966
> color (#!2 & sel) #5a71bb66
> color (#!2 & sel) #5b72be66
> color (#!2 & sel) #5c73bf66
> color (#!2 & sel) #5d74c166
> color (#!2 & sel) #5d75c266
> color (#!2 & sel) #5e76c566
> color (#!2 & sel) #5f78c666
> color (#!2 & sel) #617aca66
> color (#!2 & sel) #637ccd66
> color (#!2 & sel) #637cce66
> color (#!2 & sel) #647dcf66
> color (#!2 & sel) #6680d466
> color (#!2 & sel) #6782d766
> color (#!2 & sel) #6882d866
[Repeated 1 time(s)]
> color (#!2 & sel) #6983da66
> color (#!2 & sel) #6a84dc66
> color (#!2 & sel) #6a85dc66
> color (#!2 & sel) #6b86de66
> color (#!2 & sel) #6b87e066
> color (#!2 & sel) #6c87e066
[Repeated 1 time(s)]
> color (#!2 & sel) #6c87e166
> color (#!2 & sel) #6c88e166
> color (#!2 & sel) #6c88e266
> color (#!2 & sel) #6d88e266
> color (#!2 & sel) #6d89e366
> select clear
> set bgColor white
> hide #!2 cartoons
[Repeated 1 time(s)]
> show #!2 cartoons
> transparency #2 60
> transparency #2 20
> select /A 368-675
Expected a keyword
> select /A:368-675
4858 atoms, 4968 bonds, 616 residues, 2 models selected
> color (#!2 & sel) #698ae366
[Repeated 1 time(s)]
> color (#!2 & sel) #6787e366
> color (#!2 & sel) #6786e366
> color (#!2 & sel) #6785e366
> color (#!2 & sel) #6684e366
> color (#!2 & sel) #6582e366
> color (#!2 & sel) #6079e366
> color (#!2 & sel) #5868e366
> color (#!2 & sel) #545ee366
> color (#!2 & sel) #545de366
> color (#!2 & sel) #545ce366
> color (#!2 & sel) #5356e366
> color (#!2 & sel) #5350e366
[Repeated 1 time(s)]
> color (#!2 & sel) #544fe366
> color (#!2 & sel) #534ee366
> color (#!2 & sel) #534de366
> color (#!2 & sel) #554be366
> color (#!2 & sel) #584ae366
> color (#!2 & sel) #5b49e366
> color (#!2 & sel) #5f48e366
> color (#!2 & sel) #6246e366
> color (#!2 & sel) #6444e366
> color (#!2 & sel) #6743e366
> color (#!2 & sel) #6842e366
> color (#!2 & sel) #6941e366
> color (#!2 & sel) #6b3fe366
> color (#!2 & sel) #703de366
> color (#!2 & sel) #723ce366
> color (#!2 & sel) #723be366
> color (#!2 & sel) #713ae366
> color (#!2 & sel) #6d37e366
> color (#!2 & sel) #6a35e366
> color (#!2 & sel) #6432e366
> color (#!2 & sel) #5d2ee366
> color (#!2 & sel) #4c25e366
> color (#!2 & sel) #4321e366
> color (#!2 & sel) #4121e366
> color (#!2 & sel) #3b1fe366
> color (#!2 & sel) #2516e366
> color (#!2 & sel) #1e13e366
> color (#!2 & sel) #1c12e366
> color (#!2 & sel) #1b13e366
> color (#!2 & sel) #1410e366
> color (#!2 & sel) #0b0fe366
> color (#!2 & sel) #0a10e366
> color (#!2 & sel) #0b13e366
> color (#!2 & sel) #0717e366
> color (#!2 & sel) #0518e366
> color (#!2 & sel) #0619e366
> color (#!2 & sel) #061ae366
> color (#!2 & sel) #041ce366
> color (#!2 & sel) #0024e366
> color (#!2 & sel) #0029e366
> color (#!2 & sel) #002be366
> color (#!2 & sel) #002de366
> color (#!2 & sel) #0031e366
> color (#!2 & sel) #0035e366
> color (#!2 & sel) #0038e366
> color (#!2 & sel) #003ce366
> color (#!2 & sel) #003de366
> color (#!2 & sel) #003fe366
> color (#!2 & sel) #0040e366
> color (#!2 & sel) #0041e366
> color (#!2 & sel) #0042e366
> color (#!2 & sel) #0043e366
> color (#!2 & sel) #0545e366
> color (#!2 & sel) #0a47e366
> color (#!2 & sel) #104be366
> color (#!2 & sel) #144de366
> color (#!2 & sel) #1a51e366
> color (#!2 & sel) #2053e366
> color (#!2 & sel) #2a56e366
> color (#!2 & sel) #3259e366
> color (#!2 & sel) #355ae366
[Repeated 1 time(s)]
> color (#!2 & sel) #385ae366
> color (#!2 & sel) #3e5ae366
[Repeated 3 time(s)]
> color (#!2 & sel) #3e5be366
> color (#!2 & sel) #405de366
> color (#!2 & sel) #425fe366
> color (#!2 & sel) #4360e366
> color (#!2 & sel) #4862e366
> color (#!2 & sel) #4b63e366
> color (#!2 & sel) #4d63e366
[Repeated 1 time(s)]
> color (#!2 & sel) #4e63e366
[Repeated 2 time(s)]
> color (#!2 & sel) #4f63e366
> color (#!2 & sel) #5062e366
> color (#!2 & sel) #5261e366
> color (#!2 & sel) #5361e366
> color (#!2 & sel) #5461e366
> color (#!2 & sel) #5560e366
> color (#!2 & sel) #5660e366
> color (#!2 & sel) #585fe366
> color (#!2 & sel) #585ee366
> color (#!2 & sel) #595ee366
> color (#!2 & sel) #5a5de366
> color (#!2 & sel) #5b5de366
> color (#!2 & sel) #5c5de366
> color (#!2 & sel) #5d5ce366
> color (#!2 & sel) #635fe366
> color (#!2 & sel) #6560e366
> color (#!2 & sel) #6760e366
> color (#!2 & sel) #6961e366
> color (#!2 & sel) #6b61e366
> color (#!2 & sel) #7063e366
> color (#!2 & sel) #7665e366
> color (#!2 & sel) #7966e366
> color (#!2 & sel) #7a66e366
[Repeated 2 time(s)]
> color (#!2 & sel) #847fe366
> color (#!2 & sel) #837fe366
> color (#!2 & sel) #837ee366
[Repeated 1 time(s)]
> color (#!2 & sel) #837de366
> color (#!2 & sel) #827ce366
> color (#!2 & sel) #827be366
> color (#!2 & sel) #8279e366
[Repeated 1 time(s)]
> color (#!2 & sel) #8378e366
> color (#!2 & sel) #8478e366
> color (#!2 & sel) #8678e366
> color (#!2 & sel) #8777e366
> color (#!2 & sel) #8877e366
> color (#!2 & sel) #8a76e366
> color (#!2 & sel) #8b76e366
> color (#!2 & sel) #8b75e366
> color (#!2 & sel) #8b74e366
> color (#!2 & sel) #8c74e366
> color (#!2 & sel) #8b73e366
> color (#!2 & sel) #8b72e366
> color (#!2 & sel) #8a71e366
> color (#!2 & sel) #8a70e366
> color (#!2 & sel) #8970e366
> color (#!2 & sel) #896fe366
> color (#!2 & sel) #896ee366
> color (#!2 & sel) #886ee366
> color (#!2 & sel) #886de366
> color (#!2 & sel) #886ce366
> color (#!2 & sel) #876ce366
> color (#!2 & sel) #876be366
> color (#!2 & sel) #876ae366
> color (#!2 & sel) #8669e366
[Repeated 1 time(s)]
> color (#!2 & sel) #8568e366
> color (#!2 & sel) #8468e366
> color (#!2 & sel) #8368e366
> color (#!2 & sel) #8367e366
> color (#!2 & sel) #8364e366
> color (#!2 & sel) #8363e366
[Repeated 1 time(s)]
> color (#!2 & sel) #8261e366
[Repeated 1 time(s)]
> color (#!2 & sel) #815fe366
[Repeated 1 time(s)]
> color (#!2 & sel) #805de366
> color (#!2 & sel) #7f5ce366
> color (#!2 & sel) #7d5be366
> color (#!2 & sel) #755be366
> color (#!2 & sel) #725ee366
> color (#!2 & sel) #7264e366
> color (#!2 & sel) #7267e366
[Repeated 2 time(s)]
> color (#!2 & sel) #6d66e366
> color (#!2 & sel) #6c65e366
> color (#!2 & sel) #6663e366
> color (#!2 & sel) #6362e366
> color (#!2 & sel) #6262e366
> color (#!2 & sel) #5e63e366
> color (#!2 & sel) #5d64e366
> color (#!2 & sel) #5c64e366
[Repeated 1 time(s)]
> color (#!2 & sel) #5b65e366
> color (#!2 & sel) #5966e366
> color (#!2 & sel) #5867e366
[Repeated 2 time(s)]
> select clear
> set bgColor black
> set bgColor white
> lighting simple
> lighting soft
> lighting full
> lighting simple
> lighting full
> lighting simple
> lighting full
> lighting simple
> lighting soft
> lighting simple
> lighting full
> select A/:368-675
Expected an objects specifier or a keyword
> select /A:368-675
4858 atoms, 4968 bonds, 616 residues, 2 models selected
> transparency (#!2 & sel) 40
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting simple
> lighting soft
> lighting full
> select /A:1:40
34 atoms, 30 bonds, 4 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gold
> select /A:1-40
568 atoms, 576 bonds, 80 residues, 2 models selected
> color sel gold
> color sel yellow
> color sel khaki
> color sel goldenrod
> color sel green yellow
> color sel yellow green
> color sel dark khaki
> color sel light salmon
> color sel sandy brown
> color sel wheat
> color sel khaki
> color sel goldenrod
> select #1/A:10 #2/A:10
14 atoms, 12 bonds, 2 residues, 2 models selected
> select #1/A:10-11 #2/A:10-11
28 atoms, 28 bonds, 4 residues, 2 models selected
. [ID: 1] region 2 chains [10-11] RMSD: 0.000
> color sel red
> color sel dark red
> color sel maroon
> color sel coral
> color sel indian red
> color sel tomato
> select /A:41-675
10116 atoms, 10306 bonds, 1270 residues, 2 models selected
> color sel medium purple
> select /A:368-675
4858 atoms, 4968 bonds, 616 residues, 2 models selected
> color sel royal blue
> color sel slate blue
> color sel dark slate blue
> color sel medium blue
> color sel blue violet
> color sel dark violet
> color sel rebecca purple
> color sel dodger blue
> color sel cornflower blue
> color sel blue
> color sel royal blue
> color sel medium slate blue
> color sel slate blue
> color sel dark slate blue
> color sel rebecca purple
> color sel cornflower blue
> color sel slate blue
> color sel medium slate blue
> color sel royal blue
> color sel medium slate blue
> color sel royal blue
> select clear
> ui tool show "Side View"
> lighting simple
> lighting soft
> lighting full
> view orient
> select A/
Expected an objects specifier or a keyword
> select /A
10684 atoms, 10884 bonds, 1350 residues, 2 models selected
> show sel & #!2 cartoons
[Repeated 3 time(s)]
> transparency (#!2 & sel) 40
> select /A:368-675
4858 atoms, 4968 bonds, 616 residues, 2 models selected
> show sel & #!2 cartoons
[Repeated 2 time(s)]
> show sel & #!2 atoms
[Repeated 1 time(s)]
> show sel & #!2 cartoons
> hide sel & #!2 surfaces
> hide sel & #!2 atoms
> show sel & #!2 surfaces
> select clear
> save /Users/lau/Desktop/COP1_colored.tif width 1616 height 1023 supersample
> 3 transparentBackground true
> select all
10684 atoms, 10884 bonds, 1350 residues, 2 models selected
> transparency (#!2 & sel) 10
> select A/
Expected an objects specifier or a keyword
> select /A
10684 atoms, 10884 bonds, 1350 residues, 2 models selected
> transparency (#!2 & sel) 30
> save /Users/lau/Desktop/COP1_colored.tif width 1616 height 1023 supersample
> 3
> select clear
> save /Users/lau/Desktop/COP1_colored.tif width 1616 height 1023 supersample
> 3
> select A/:6-13
Expected an objects specifier or a keyword
> select /A:6-13
110 atoms, 112 bonds, 16 residues, 2 models selected
> ui tool show "Color Actions"
> color sel tomato
> select clear
> save /Users/lau/Desktop/COP1_colored_2.tif width 1616 height 1023
> supersample 3
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_hy5/fold_hy5_model_0.cif"
Chain information for fold_hy5_model_0.cif #3
---
Chain | Description
A | .
> close #3
> save "/Users/lau/Wigge Lab Dropbox/Wigge Lab's shared workspace/Lab
> Info/Manuscripts/COP1/COP1 2024/COP1-HY5 animation/COP1_closed.cxs"
——— End of log from Sat Sep 14 13:54:22 2024 ———
opened ChimeraX session
> close #1
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
Cell requested for row 0 is out of bounds for table with 2 rows! Resizing
table model.
> ui tool show Angles/Torsions
> select /A: 22
7 atoms, 6 bonds, 1 residue, 1 model selected
> cofr sel
> ui mousemode right "rotate slab"
> ui tool show "Model Panel"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> ~hbonds
> hbonds sel reveal true
0 hydrogen bonds found
Exactly two atoms must be selected!
> show sel atoms
> hide sel cartoons
[Repeated 4 time(s)]
> close #2.2
> hide sel surfaces
> show sel atoms
> hide sel atoms
> show sel atoms
> distance style symbol false
[Repeated 2 time(s)]
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> show (#!2 & sel) target ab
> style (#!2 & sel) stick
Changed 7 atom styles
> ui tool show Rotamers
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 3 time(s)]
> swapaa interactive sel VAL rotLib Dunbrack
/A VAL 22: phi -58.5, psi 130.4 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> hide sel atoms
> show sel cartoons
> hide sel surfaces
> select /A
5357 atoms, 5454 bonds, 678 residues, 4 models selected
> hide sel surfaces
> hide sel atoms
> select /A: 22
7 atoms, 6 bonds, 1 residue, 1 model selected
> swapaa interactive sel VAL rotLib Dynameomics
fold_cop1_model_0.cif #!2/A VAL 22: phi -58.5, psi 130.4 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> swapaa interactive sel VAL rotLib Dynameomics
fold_cop1_model_0.cif #!2/A VAL 22: phi -58.5, psi 130.4 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> swapaa interactive sel VAL rotLib Dynameomics
fold_cop1_model_0.cif #!2/A VAL 22: phi -58.5, psi 130.4 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> swapaa interactive sel VAL rotLib Richardson.mode
fold_cop1_model_0.cif #!2/A VAL 22: phi -58.5, psi 130.4 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> swapaa #!2/A:22 VAL criteria 2 rotLib Dynameomics retain false
Using Dynameomics library
fold_cop1_model_0.cif #!2/A VAL 22: phi -58.5, psi 130.4 trans
Applying VAL rotamer (chi angles: -72.1) to fold_cop1_model_0.cif #!2/A VAL 22
> swapaa interactive sel VAL rotLib Richardson.mode
fold_cop1_model_0.cif #!2/A VAL 22: phi -58.5, psi 130.4 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> swapaa #!2/A:22 VAL criteria 3 rotLib Dynameomics retain false
Using Dynameomics library
fold_cop1_model_0.cif #!2/A VAL 22: phi -58.5, psi 130.4 trans
Applying VAL rotamer (chi angles: 60.7) to fold_cop1_model_0.cif #!2/A VAL 22
No rotamers selected. Click the 'Calculate' button (not 'OK') to add a column
to the table.
> swapaa #!2/A:22 VAL criteria 2 rotLib Dynameomics retain false
Using Dynameomics library
fold_cop1_model_0.cif #!2/A VAL 22: phi -58.5, psi 130.4 trans
Applying VAL rotamer (chi angles: -72.1) to fold_cop1_model_0.cif #!2/A VAL 22
> select subtract #2.1
1 model selected
> select add #2.2
15 atoms, 12 bonds, 3 residues, 4 models selected
> select add #2.6
30 atoms, 24 bonds, 6 residues, 8 models selected
> select subtract #2.2
15 atoms, 12 bonds, 3 residues, 4 models selected
> swapaa interactive sel VAL rotLib Richardson.mode
No amino acid residues specified for swapping
> hide #!2.2 models
> close #2.2
> close #2.6
> view #2.1 clip false
No displayed objects specified.
> select /A: 22
7 atoms, 6 bonds, 1 residue, 1 model selected
> ui tool show Rotamers
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> select /A: 21
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A: 20
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A: 20
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A: 19
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A: 19
7 atoms, 6 bonds, 1 residue, 1 model selected
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> ui tool show "Show Sequence Viewer"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> sequence chain /A
Alignment identifier is 2/A
> select /A:15
7 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:15
7 atoms, 7 bonds, 1 residue, 1 model selected
> swapaa interactive sel THR rotLib Dunbrack
/A PRO 15: phi -66.4, psi 131.0 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> hbonds #!2 & ~#!2/A:15 & ~solvent reveal true restrict #2.2 & ~@c,ca,n
0 hydrogen bonds found
No rotamers selected
> swapaa #!2/A:15 THR criteria 2 rotLib Dunbrack
Using Dunbrack library
fold_cop1_model_0.cif #!2/A PRO 15: phi -66.4, psi 131.0 trans
Applying THR rotamer (chi angles: 58.0) to fold_cop1_model_0.cif #!2/A THR 15
> swapaa interactive sel THR rotLib Dunbrack
/A THR 15: phi -66.4, psi 131.0 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> swapaa interactive sel THR rotLib Dunbrack
fold_cop1_model_0.cif #!2/A THR 15: phi -66.4, psi 131.0 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> swapaa interactive sel THR rotLib Dunbrack
fold_cop1_model_0.cif #!2/A THR 15: phi -66.4, psi 131.0 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> hide #2.1 models
> hide #!2 models
> show #!2 models
> hide #1 models
> close #1
> hide #!2.2 models
> show #!2.2 models
> hide #!2.3 models
> show #!2.3 models
> hide #!2.4 models
> show #!2.4 models
> swapaa #!2/A:15 THR criteria 3 rotLib Dunbrack retain false
Using Dunbrack library
fold_cop1_model_0.cif #!2/A THR 15: phi -66.4, psi 131.0 trans
Applying THR rotamer (chi angles: -177.1) to fold_cop1_model_0.cif #!2/A THR
15
> view #2.3 clip false
> ui tool show Rotamers
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> swapaa interactive sel THR rotLib Dunbrack
fold_cop1_model_0.cif #!2/A THR 15: phi -66.4, psi 131.0 trans
Changed 12 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> swapaa interactive sel CYH rotLib Dunbrack
fold_cop1_model_0.cif #!2/A THR 15: phi -66.4, psi 131.0 trans
Changed 9 bond radii
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_summary_confidences_0.json"
JSON file "/Volumes/LAU_32GB/COP1-HY5
Alphafold/fold_cop1/fold_cop1_summary_confidences_0.json" is not AlphaFold
predicted aligned error data, expected a top level list
> preset "overall look" interactive
Using preset: Overall Look / Interactive
Preset expands to these ChimeraX commands:
~set bg
graphics silhouettes f
lighting depthCue t
> color bfactor sel
4 atoms, 1 residues, 1 surfaces, atom bfactor range 34.6 to 38
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json"
Opened AlphaFold PAE with values for 675 residues and atoms
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> ui windowfill toggle
[Repeated 1 time(s)]
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
> alphafold pae #2 colorDomains true
> show #2.1 models
> show #!2 target m
[Repeated 5 time(s)]
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> alphafold pae #2 colorDomains true
[Repeated 3 time(s)]
> select clear
> color /A:27-230 lime
> alphafold pae #2 colorDomains true
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1/fold_cop1_full_data_0.json" format pae
Opened AlphaFold PAE with values for 675 residues and atoms
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> view #2.1 clip false
No displayed objects specified.
> hide #2.1 models
> show #2.1 models
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_cop1/fold_cop1_model_0.cif"
Chain information for fold_cop1_model_0.cif #1
---
Chain | Description
A | .
> color #2/A:40 lime
> color #2/A:66 magenta
> color #2/A:26-239 lime
> color #2/A:178 lime
> color #2/A:152 magenta
> alphafold pae #2 colorDomains true
[Repeated 5 time(s)]
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> select all
10684 atoms, 10883 bonds, 1350 residues, 2 models selected
> alphafold pae #2 colorDomains true
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> alphafold pae #2 colorDomains true
[Repeated 1 time(s)]
> show sel surfaces
[Repeated 1 time(s)]
> alphafold pae #2 colorDomains true
> color #2/A:288-674 lime
> color #2/A:1-18 magenta
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> alphafold pae #2 colorDomains true
[Repeated 1 time(s)]
> color #2/A:2-35 lime
> color #2/A:48-675 magenta
> alphafold pae #2 colorDomains true
[Repeated 4 time(s)]
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> color bfactor #2 palette alphafold
5342 atoms, 675 residues, 1 surfaces, atom bfactor range 17.2 to 97.8
> preset "molecular surfaces" "atomic coloring (transparent)"
Using preset: Molecular Surfaces / Atomic Coloring (Transparent)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color fromatoms targ s trans 70
> hide sel surfaces
> hide sel atoms
> show sel atoms
> hide sel cartoons
[Repeated 1 time(s)]
> hide sel atoms
> show sel cartoons
> alphafold pae #2 colorDomains true
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> hide #1.1 target m
> select subtract #1.1
5342 atoms, 5441 bonds, 675 residues, 3 models selected
> hide #!1 models
> select clear
> close #1
> color /A:118 lime
> color /A:183 magenta
> color /A:42-231 lime
> color /A:7-99 lime
> color /A:286-669 magenta
> color /A:99 lime
> color /A:669 magenta
> color /A:1-48 lime
> color /A:19 lime
> color /A:6 magenta
> color /A:272-675 lime
> color /A:1-26 magenta
> color /A:1-20 lime
> color /A:286-675 magenta
> alphafold pae #2 colorDomains true
Alignment identifier is 2/A
> select /A:10
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:10-11
14 atoms, 14 bonds, 2 residues, 1 model selected
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1_hy5_complex/fold_cop1_hy5_complex_full_data_0.json"
Opening an AlphaFold PAE file requires specifying the structure to associate.
Did not find an open structure from the same directory. To specify the
structure use menu
Tools / Structure Prediction / AlphaFold Error Plot
or use the open command, for example
open /Volumes/LAU_32GB/COP1-HY5
Alphafold/fold_cop1_hy5_complex/fold_cop1_hy5_complex_full_data_0.json format
pae structure #1
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_cop1/fold_cop1_model_0.cif"
Chain information for fold_cop1_model_0.cif #1
---
Chain | Description
A | .
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_cop1/fold_cop1_model_1.cif"
Chain information for fold_cop1_model_1.cif #3
---
Chain | Description
A | .
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_cop1/fold_cop1_model_2.cif"
Chain information for fold_cop1_model_2.cif #4
---
Chain | Description
A | .
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_cop1/fold_cop1_model_3.cif"
Chain information for fold_cop1_model_3.cif #5
---
Chain | Description
A | .
> open "/Volumes/LAU_32GB/COP1-HY5 Alphafold/fold_cop1/fold_cop1_model_4.cif"
Chain information for fold_cop1_model_4.cif #6
---
Chain | Description
A | .
> hide #!2 models
> hide #2.1 models
> show #!2 models
> show #2.1 models
> hide #1 models
> hide #3 models
> hide #4 models
> hide #5 models
> hide #6 models
> show #1 models
> hide #1 models
> show #1 models
> hide #!2 models
> hide #2.1 models
> close #2.1
> hide #1 models
> select add #2
5342 atoms, 5441 bonds, 675 residues, 1 model selected
> select subtract #2
Nothing selected
> show #1 models
> close #2
> show #3 models
> hide #1 models
> show #1 models
> hide #1 models
> hide #3 models
> show #4 models
> show #1 models
> hide #4 models
> show #4 models
> hide #4 models
> hide #1 models
> show #3 models
> hide #3 models
> show #5 models
> hide #5 models
> show #6 models
> hide #6 models
> show #5 models
> hide #5 models
> show #4 models
> hide #4 models
> show #3 models
> show #1 models
> select /1
Nothing selected
> select /A
26710 atoms, 27210 bonds, 3375 residues, 5 models selected
> show #4 models
> show #5 models
> show #6 models
> select subtract #3
21368 atoms, 21768 bonds, 2700 residues, 4 models selected
> select subtract #4
16026 atoms, 16326 bonds, 2025 residues, 3 models selected
> select subtract #5
10684 atoms, 10884 bonds, 1350 residues, 2 models selected
> select subtract #6
5342 atoms, 5442 bonds, 675 residues, 1 model selected
> hide #3 models
> hide #4 models
> hide #5 models
> hide #6 models
> show #3 models
> select subtract #1
Nothing selected
> select add #3
5342 atoms, 5442 bonds, 675 residues, 1 model selected
> hide #1 models
> show #1 models
> ui mousemode right "translate selected models"
> ui mousemode right rotate
> select subtract #3
Nothing selected
> select 1/
Expected an objects specifier or a keyword
> select /1:A
Nothing selected
> select /1
Nothing selected
> show #4 models
> show #5 models
> show #6 models
> select add #1
5342 atoms, 5442 bonds, 675 residues, 1 model selected
> select add #3
10684 atoms, 10884 bonds, 1350 residues, 2 models selected
> select add #4
16026 atoms, 16326 bonds, 2025 residues, 3 models selected
> select add #5
21368 atoms, 21768 bonds, 2700 residues, 4 models selected
> select add #6
26710 atoms, 27210 bonds, 3375 residues, 5 models selected
> ui tool show "Modeller Comparative"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
No alignments chosen for modeling
> ui tool show Matchmaker
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> matchmaker #3-6 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_1.cif,
chain A (#3), sequence alignment score = 3505.1
RMSD between 480 pruned atom pairs is 0.710 angstroms; (across all 675 pairs:
5.895)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_2.cif,
chain A (#4), sequence alignment score = 3502.7
RMSD between 489 pruned atom pairs is 0.647 angstroms; (across all 675 pairs:
4.976)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_3.cif,
chain A (#5), sequence alignment score = 3506.3
RMSD between 459 pruned atom pairs is 0.556 angstroms; (across all 675 pairs:
7.536)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_4.cif,
chain A (#6), sequence alignment score = 3498.5
RMSD between 426 pruned atom pairs is 0.617 angstroms; (across all 675 pairs:
8.497)
> select subtract #1
21368 atoms, 21768 bonds, 2700 residues, 4 models selected
> select subtract #3
16026 atoms, 16326 bonds, 2025 residues, 3 models selected
> select subtract #4
10684 atoms, 10884 bonds, 1350 residues, 2 models selected
> select subtract #5
5342 atoms, 5442 bonds, 675 residues, 1 model selected
> select subtract #6
Nothing selected
> hide #3 models
> hide #4 models
> hide #5 models
> hide #6 models
> show #3 models
> hide #3 models
> show #4 models
> show #3 models
> hide #1 models
> show #5 models
> hide #4 models
> hide #3 models
> hide #5 models
> show #1 models
> show #5 models
> hide #1 models
> show #6 models
> hide #5 models
> show #5 models
> show #4 models
> show #3 models
> show #1 models
> hide #3 models
> hide #4 models
> hide #5 models
> hide #6 models
> show #6 models
> hide #6 models
> show #3 models
> show #4 models
> show #5 models
> show #6 models
> ui mousemode right "play coordinates"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> save /Users/lau/Documentos/Ongoing/COP1/COP1_alone.cxs
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1_hy5_complex/fold_cop1_hy5_complex_model_0.cif"
Chain information for fold_cop1_hy5_complex_model_0.cif #2
---
Chain | Description
A | .
B | .
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1_hy5_complex/fold_cop1_hy5_complex_model_1.cif"
Chain information for fold_cop1_hy5_complex_model_1.cif #7
---
Chain | Description
A | .
B | .
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1_hy5_complex/fold_cop1_hy5_complex_model_2.cif"
Chain information for fold_cop1_hy5_complex_model_2.cif #8
---
Chain | Description
A | .
B | .
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1_hy5_complex/fold_cop1_hy5_complex_model_3.cif"
Chain information for fold_cop1_hy5_complex_model_3.cif #9
---
Chain | Description
A | .
B | .
> open "/Volumes/LAU_32GB/COP1-HY5
> Alphafold/fold_cop1_hy5_complex/fold_cop1_hy5_complex_model_4.cif"
Chain information for fold_cop1_hy5_complex_model_4.cif #10
---
Chain | Description
A | .
B | .
> ui tool show Matchmaker
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> matchmaker #2 to #8/A pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cop1_hy5_complex_model_2.cif, chain A (#8) with
fold_cop1_hy5_complex_model_0.cif, chain A (#2), sequence alignment score =
3442.1
RMSD between 451 pruned atom pairs is 0.580 angstroms; (across all 675 pairs:
14.410)
> hide #1 models
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> hide #6 models
> ui tool show Matchmaker
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> matchmaker #2,8-10 & sel to #7/A & sel pairing bs
No 'to' chains specified
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 72, in refresh
self._items_change()
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 169, in _items_change
item_names = self._item_names()
^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 47, in _item_names
values = [v for v in self.list_func() if self.filter_func(v)]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 47, in
values = [v for v in self.list_func() if self.filter_func(v)]
^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 22, in
filter_func = lambda x, ff=filter_func, cf=class_filter: ff(x) and
isinstance(x, cf)
^^^^^
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/match_maker/tool.py", line 328, in _filter_bring_models
ref_structures = [ref_value.structure]
^^^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'structure'
AttributeError: 'NoneType' object has no attribute 'structure'
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/match_maker/tool.py", line 328, in _filter_bring_models
ref_structures = [ref_value.structure]
^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
> matchmaker #2-10 & sel to #1 & sel
No 'to' model specified
> matchmaker #2-10 & sel to #1 & sel
No 'to' model specified
> matchmaker #3-10 & sel to #2 & sel
No 'to' model specified
> hide #7 models
> hide #8 models
> hide #9 models
> hide #10 models
> show #9 models
> hide #9 models
> show #8 models
> hide #8 models
> show #7 models
> hide #7 models
> show #6 models
> show #7 models
> ui tool show Matchmaker
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> matchmaker #2-10 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_0.cif, chain A (#2), sequence alignment score =
3442.7
RMSD between 431 pruned atom pairs is 0.644 angstroms; (across all 675 pairs:
20.990)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_1.cif,
chain A (#3), sequence alignment score = 3505.1
RMSD between 480 pruned atom pairs is 0.710 angstroms; (across all 675 pairs:
5.895)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_2.cif,
chain A (#4), sequence alignment score = 3502.7
RMSD between 489 pruned atom pairs is 0.647 angstroms; (across all 675 pairs:
4.976)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_3.cif,
chain A (#5), sequence alignment score = 3506.3
RMSD between 459 pruned atom pairs is 0.556 angstroms; (across all 675 pairs:
7.536)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_4.cif,
chain A (#6), sequence alignment score = 3498.5
RMSD between 426 pruned atom pairs is 0.617 angstroms; (across all 675 pairs:
8.497)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_1.cif, chain A (#7), sequence alignment score =
3452.9
RMSD between 413 pruned atom pairs is 0.685 angstroms; (across all 675 pairs:
21.616)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_2.cif, chain A (#8), sequence alignment score =
3432.5
RMSD between 452 pruned atom pairs is 0.784 angstroms; (across all 675 pairs:
21.495)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_3.cif, chain A (#9), sequence alignment score =
3462.5
RMSD between 455 pruned atom pairs is 0.601 angstroms; (across all 675 pairs:
22.545)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_4.cif, chain A (#10), sequence alignment score =
3448.1
RMSD between 460 pruned atom pairs is 0.796 angstroms; (across all 675 pairs:
22.634)
> hide #6 models
> show #1 models
> ui tool show Matchmaker
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> select /1
Nothing selected
> matchmaker #2-10 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_0.cif, chain A (#2), sequence alignment score =
3442.7
RMSD between 431 pruned atom pairs is 0.644 angstroms; (across all 675 pairs:
20.990)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_1.cif,
chain A (#3), sequence alignment score = 3505.1
RMSD between 480 pruned atom pairs is 0.710 angstroms; (across all 675 pairs:
5.895)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_2.cif,
chain A (#4), sequence alignment score = 3502.7
RMSD between 489 pruned atom pairs is 0.647 angstroms; (across all 675 pairs:
4.976)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_3.cif,
chain A (#5), sequence alignment score = 3506.3
RMSD between 459 pruned atom pairs is 0.556 angstroms; (across all 675 pairs:
7.536)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_4.cif,
chain A (#6), sequence alignment score = 3498.5
RMSD between 426 pruned atom pairs is 0.617 angstroms; (across all 675 pairs:
8.497)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_1.cif, chain A (#7), sequence alignment score =
3452.9
RMSD between 413 pruned atom pairs is 0.685 angstroms; (across all 675 pairs:
21.616)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_2.cif, chain A (#8), sequence alignment score =
3432.5
RMSD between 452 pruned atom pairs is 0.784 angstroms; (across all 675 pairs:
21.495)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_3.cif, chain A (#9), sequence alignment score =
3462.5
RMSD between 455 pruned atom pairs is 0.601 angstroms; (across all 675 pairs:
22.545)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_4.cif, chain A (#10), sequence alignment score =
3448.1
RMSD between 460 pruned atom pairs is 0.796 angstroms; (across all 675 pairs:
22.634)
> show #2 models
> show #3 models
> show #4 models
> show #5 models
> show #6 models
> show #8 models
> show #9 models
> show #10 models
> ui tool show Matchmaker
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> matchmaker #2-10 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_0.cif, chain A (#2), sequence alignment score =
3442.7
RMSD between 431 pruned atom pairs is 0.644 angstroms; (across all 675 pairs:
20.990)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_1.cif,
chain A (#3), sequence alignment score = 3505.1
RMSD between 480 pruned atom pairs is 0.710 angstroms; (across all 675 pairs:
5.895)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_2.cif,
chain A (#4), sequence alignment score = 3502.7
RMSD between 489 pruned atom pairs is 0.647 angstroms; (across all 675 pairs:
4.976)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_3.cif,
chain A (#5), sequence alignment score = 3506.3
RMSD between 459 pruned atom pairs is 0.556 angstroms; (across all 675 pairs:
7.536)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with fold_cop1_model_4.cif,
chain A (#6), sequence alignment score = 3498.5
RMSD between 426 pruned atom pairs is 0.617 angstroms; (across all 675 pairs:
8.497)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_1.cif, chain A (#7), sequence alignment score =
3452.9
RMSD between 413 pruned atom pairs is 0.685 angstroms; (across all 675 pairs:
21.616)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_2.cif, chain A (#8), sequence alignment score =
3432.5
RMSD between 452 pruned atom pairs is 0.784 angstroms; (across all 675 pairs:
21.495)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_3.cif, chain A (#9), sequence alignment score =
3462.5
RMSD between 455 pruned atom pairs is 0.601 angstroms; (across all 675 pairs:
22.545)
Matchmaker fold_cop1_model_0.cif, chain A (#1) with
fold_cop1_hy5_complex_model_4.cif, chain A (#10), sequence alignment score =
3448.1
RMSD between 460 pruned atom pairs is 0.796 angstroms; (across all 675 pairs:
22.634)
> ui mousemode right "play coordinates"
> lighting simple
> lighting soft
> lighting full
> hide #3 models
> hide #4 models
> hide #5 models
> hide #6 models
> hide #7 models
> hide #8 models
> hide #9 models
> hide #10 models
> select /A:1-40
2840 atoms, 2880 bonds, 400 residues, 10 models selected
> color (#1-2 & sel) yellow
> select /B
6465 atoms, 6500 bonds, 840 residues, 5 models selected
> color (#2 & sel) magenta
> clear all
Unknown command: clear all
> select clear
> select /a:1-40
2840 atoms, 2880 bonds, 400 residues, 10 models selected
> ui tool show "Color Actions"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color sel goldenrod
[Repeated 4 time(s)]
> select /a:368-675
24290 atoms, 24840 bonds, 3080 residues, 10 models selected
> color sel medium blue
> color sel royal blue
> select /a:41-367
26290 atoms, 26680 bonds, 3270 residues, 10 models selected
> color sel indigo
> color sel medium slate blue
> ui tool show "Show Sequence Viewer"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> select /a:10-11
140 atoms, 140 bonds, 20 residues, 10 models selected
> color sel tomato
> show sel & #1-2 surfaces
> select all
59885 atoms, 60920 bonds, 7590 residues, 10 models selected
> show sel & #!1-2 surfaces
> transparency (#!1-2 & sel) 30
> transparency (#!1-2 & sel) 90
> transparency (#!1-2 & sel) 50
> select /A:1-40
2840 atoms, 2880 bonds, 400 residues, 10 models selected
> color sel goldenrod
> select /A:11-12
120 atoms, 120 bonds, 20 residues, 10 models selected
> color sel tomato
> select /A:368-675
24290 atoms, 24840 bonds, 3080 residues, 10 models selected
> color sel royal blue
> select /A:41-367
26290 atoms, 26680 bonds, 3270 residues, 10 models selected
> color sel medium slate blue
> hide #!1 models
> select /B:1-100
3805 atoms, 3830 bonds, 500 residues, 5 models selected
> select /B:80-100
905 atoms, 905 bonds, 105 residues, 5 models selected
> ui tool show "Show Sequence Viewer"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> sequence chain #2/B #7/B #8/B #9/B #10/B
Alignment identifier is 1
> select #2/B:43 #7/B:43 #8/B:43 #9/B:43 #10/B:43
35 atoms, 30 bonds, 5 residues, 5 models selected
> select #2/B:43-44 #7/B:43-44 #8/B:43-44 #9/B:43-44 #10/B:43-44
70 atoms, 70 bonds, 10 residues, 5 models selected
. [ID: 1] region 5 chains [43-44] RMSD: 0.358
> color sel tomato
[Repeated 3 time(s)]
> select /B
6465 atoms, 6500 bonds, 840 residues, 5 models selected
> color sel deep pink
> transparency (#!2 & sel) 70
> color sel orchid
> transparency (#!2 & sel) 70
> transparency (#!2 & sel) 40
> hide sel & #!2 cartoons
> select /A
53420 atoms, 54420 bonds, 6750 residues, 10 models selected
> hide sel & #!2 cartoons
> select /b:41-43
145 atoms, 140 bonds, 15 residues, 5 models selected
> select /b:42-43
90 atoms, 85 bonds, 10 residues, 5 models selected
> color sel tomato
> set bgColor white
> set bgColor #ffffff00
> show #!1 models
> select add #7
6707 atoms, 6810 bonds, 851 residues, 6 models selected
> select subtract #7
72 atoms, 68 bonds, 8 residues, 5 models selected
> select add #8
6689 atoms, 6793 bonds, 849 residues, 5 models selected
> select subtract #8
54 atoms, 51 bonds, 6 residues, 4 models selected
> select add #9
6671 atoms, 6776 bonds, 847 residues, 4 models selected
> select subtract #9
36 atoms, 34 bonds, 4 residues, 3 models selected
> select add #10
6653 atoms, 6759 bonds, 845 residues, 3 models selected
> select subtract #10
18 atoms, 17 bonds, 2 residues, 2 models selected
> select add #2
6635 atoms, 6742 bonds, 843 residues, 2 models selected
> select subtract #2
2 models selected
> select all
59885 atoms, 60920 bonds, 7590 residues, 10 models selected
> show sel & #!1-2 cartoons
> hide #!2 models
> select clear
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #2.2 models
> show #2.2 models
> hide #2.1 models
> show #2.1 models
> show #3 models
> show #4 models
> show #5 models
> show #6 models
> hide #!2 models
> hide #2.1 models
> hide #2.2 models
> hide #!1 models
> hide #1.1 models
> show #!1 models
> hide #6 models
> show #6 models
> hide #6 models
> hide #5 models
> show #5 models
> show #6 models
> show #!2 models
> show #7 models
> show #8 models
> show #9 models
> show #10 models
> hide #10 models
> hide #8 models
> hide #9 models
> hide #7 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> save /Users/lau/Documentos/Ongoing/COP1/full_data_session.cxs
——— End of log from Mon Sep 16 20:24:56 2024 ———
opened ChimeraX session
> hide #!2 models
> show #3-6#!1 surfaces
> hide #!1,3-6 surfaces
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> show #!1 surfaces
> hide #!1 cartoons
> hide #1.1 models
> hide #3.1 models
> show #3.1 models
> show #!1,3 surfaces
> hide #!1,3 surfaces
> show #!1,3 surfaces
> show #!4 models
> hide #!3 models
> show #!1,4 surfaces
> show #!5 models
> show #!6 models
> hide #!1 models
> show #!1 models
> show #!3 models
> hide #!1,3-6 cartoons
> show #!1,3-6 surfaces
> transparency #1,3-6 50
> select /A1-40
Nothing selected
> select /A:1-40
2840 atoms, 2880 bonds, 400 residues, 10 models selected
> color sel goldenrod
> select /A:11-12
120 atoms, 120 bonds, 20 residues, 10 models selected
> color sel tomato
> select /A:368-675
24290 atoms, 24840 bonds, 3080 residues, 10 models selected
> color sel royal blue
> select /A:41-367
26290 atoms, 26680 bonds, 3270 residues, 10 models selected
> color sel indigo
> color sel dark magenta
> select all
59885 atoms, 60920 bonds, 7590 residues, 10 models selected
> transparency (#!1,3-6 & sel) 40
> lighting soft
> lighting simple
> select clear
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lau/Desktop/movie1.mp4
Movie saved to /Users/lau/Desktop/movie1.mp4
> save /Users/lau/Desktop/image1.png supersample 3
> hide #1.1 models
> show #!3 models
> show #1.1 models
> hide #1.1 models
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lau/Desktop/movie2.mp4
Movie saved to /Users/lau/Desktop/movie2.mp4
> save /Users/lau/Desktop/image2.png supersample 3
> hide #!3 models
> show #!4 models
> hide #!1 models
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lau/Desktop/movie3.mp4
Movie saved to /Users/lau/Desktop/movie3.mp4
> save /Users/lau/Desktop/image3.png supersample 3
> hide #!4 models
> show #!5 models
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lau/Desktop/movie4.mp4
Movie saved to /Users/lau/Desktop/movie4.mp4
> save /Users/lau/Desktop/image4.png supersample 3
> show #!6 models
> hide #!5 models
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lau/Desktop/movie5.mp4
Movie saved to /Users/lau/Desktop/movie5.mp4
> save /Users/lau/Desktop/image5.png supersample 3
> set bgColor black
> set bgColor transparent
> set bgColor white
> set bgColor #ffffff00
> set bgColor black
> set bgColor transparent
> save /Users/lau/Documentos/Ongoing/COP1/ChimeraX/COP!_open&closed&hy5ed.cxs
> includeMaps true
——— End of log from Tue Sep 17 20:22:45 2024 ———
opened ChimeraX session
> hide #!6 models
> show #!2 models
> show #!2 surfaces
> hide #!2 cartoons
> transparency #2 60
> set bgColor white
> show #!2 atoms
> select /A:1-367
29130 atoms, 29570 bonds, 3670 residues, 10 models selected
> hide sel & #!2 atoms
> select /B:1-80
2955 atoms, 2975 bonds, 400 residues, 5 models selected
> select /B:1-40
1460 atoms, 1470 bonds, 200 residues, 5 models selected
> select /B:1-30
1065 atoms, 1075 bonds, 150 residues, 5 models selected
> hide sel & #!2 atoms
> select /B:55-168
4470 atoms, 4480 bonds, 570 residues, 5 models selected
> hide sel & #!2 atoms
> select /A:140:180
170 atoms, 150 bonds, 20 residues, 10 models selected
> select /A:368-400
2630 atoms, 2680 bonds, 330 residues, 10 models selected
> hide sel & #!2 atoms
> select /A:400-500
8080 atoms, 8250 bonds, 1010 residues, 10 models selected
> select /A:450-500
4130 atoms, 4200 bonds, 510 residues, 10 models selected
> select /A:1-500
39730 atoms, 40400 bonds, 5000 residues, 10 models selected
> select /A:1-4500
53420 atoms, 54420 bonds, 6750 residues, 10 models selected
> select /A:1-450
35670 atoms, 36260 bonds, 4500 residues, 10 models selected
> hide sel & #!2 atoms
> select /A:500-675
13770 atoms, 14090 bonds, 1760 residues, 10 models selected
> hide sel & #!2 atoms
> select add #2.2
15063 atoms, 14090 bonds, 1928 residues, 16 models selected
> hide #2.2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #2.1 models
> show #2.2 models
> select /A:365-675
24490 atoms, 25040 bonds, 3110 residues, 10 models selected
> show sel & #!2 atoms
> select /A:600-675
5830 atoms, 5950 bonds, 760 residues, 10 models selected
> select /A:600-630
2550 atoms, 2610 bonds, 310 residues, 10 models selected
> hide sel & #!2 atoms
> select /A:630-640
830 atoms, 840 bonds, 110 residues, 10 models selected
> hide sel & #!2 atoms
> select /A:640-650
820 atoms, 830 bonds, 110 residues, 10 models selected
> show #2.1 models
> hide #2.1 models
> select /A:530-600
5770 atoms, 5910 bonds, 710 residues, 10 models selected
> hide sel & #!2 atoms
> show sel & #!2 atoms
> show #2.1 models
> hide #2.1 models
> hide #!2 models
> hide #2.2 models
> show #!1 models
> show sel & #!1 surfaces
> select clear
> show #!3 models
> show #!4 models
> show #!5 models
> show #!6 models
> hide #!1 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!3 models
> show #!4 models
> show #!1 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!3 models
> hide #!1 models
> show #!1 models
> hide #!3 models
> show #!3 models
> hide #!1 models
> hide #!3 models
> show #!4 models
> show #!3 models
> show #!1 models
> hide #!1 models
> hide #!3 models
> hide #!4 models
> show #!5 models
> hide #!5 models
> show #!6 models
> show #!2 models
> show #!2,6 surfaces
> hide #!2 models
> show #!2 models
> hide #!6 models
> hide #!2 models
> show #!1 models
> ui tool show Contacts
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> contacts resSeparation 5 intraRes true ignoreHiddenModels true color #9d1700
> radius 0.105
1589 contacts
> select add #11
1589 pseudobonds, 1 model selected
> view clip false
> show #!1 cartoons
> hide #!1 surfaces
> hbonds #!1 reveal true
8904 hydrogen bonds found
> hide #11 models
> show #11 models
> ui tool show Clashes
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> clashes overlapCutoff 1.0 ignoreHiddenModels true color #0a500b reveal true
No clashes
> hide #!1 models
> show #7 models
> hide #7 models
> show #!1 models
> select add #12
10493 pseudobonds, 2 models selected
> select clear
> show #!1 atoms
> hide #!1 cartoons
> hide #!1 surfaces
> show #!1 surfaces
> hide #!1 surfaces
> ui tool show "Show Sequence Viewer"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> select /A:11-12
120 atoms, 120 bonds, 20 residues, 10 models selected
> select /A:10-11
140 atoms, 140 bonds, 20 residues, 10 models selected
> ui tool show "Color Actions"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color sel tomato
> select /A:12
50 atoms, 40 bonds, 10 residues, 10 models selected
> color sel goldenrod
> select /A:10-11
140 atoms, 140 bonds, 20 residues, 10 models selected
> hide #13 models
> select subtract #13
140 atoms, 140 bonds, 20 residues, 16 models selected
> select add #11
140 atoms, 140 bonds, 1589 pseudobonds, 20 residues, 17 models selected
> select subtract #11
140 atoms, 140 bonds, 20 residues, 16 models selected
> show #13 models
> select subtract #13
140 atoms, 140 bonds, 20 residues, 16 models selected
> select add #12
140 atoms, 140 bonds, 8904 pseudobonds, 20 residues, 17 models selected
> hide #11 models
> hide #13 models
> select subtract #13
140 atoms, 140 bonds, 8904 pseudobonds, 20 residues, 17 models selected
> hbonds sel & #!1 reveal true
0 hydrogen bonds found
> select all
59885 atoms, 60920 bonds, 1611 pseudobonds, 7590 residues, 16 models selected
> show #11 models
> hide #12 models
> select subtract #12
59885 atoms, 60920 bonds, 1611 pseudobonds, 7590 residues, 23 models selected
> close #12
> show #13 models
> hide #11 models
> select subtract #11
59885 atoms, 60920 bonds, 22 pseudobonds, 7590 residues, 22 models selected
> close #13
> show #11 models
> select add #11
59885 atoms, 60920 bonds, 1611 pseudobonds, 7590 residues, 23 models selected
> select /A:1-40
2840 atoms, 2880 bonds, 400 residues, 10 models selected
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> close #11
> ui tool show Contacts
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> contacts sel resSeparation 5 intraRes true ignoreHiddenModels true color
> #9d1700 radius 0.105
25 contacts
> show sel & #!1 surfaces
> hide sel & #!1 surfaces
> select /A
53420 atoms, 54420 bonds, 47 pseudobonds, 6750 residues, 16 models selected
> show sel & #!1 surfaces
> select /A:442
90 atoms, 80 bonds, 10 residues, 10 models selected
> select /A:467
140 atoms, 150 bonds, 10 residues, 10 models selected
> color (#!1 & sel) lime
> hide sel & #!1 surfaces
> select all
59885 atoms, 60920 bonds, 47 pseudobonds, 7590 residues, 16 models selected
> select all
59885 atoms, 60920 bonds, 47 pseudobonds, 7590 residues, 16 models selected
> hide sel & #!1 surfaces
> hbonds sel & #!1 reveal true
8904 hydrogen bonds found
> select add #12
59885 atoms, 60920 bonds, 8951 pseudobonds, 7590 residues, 24 models selected
> select subtract #11
59885 atoms, 60920 bonds, 8926 pseudobonds, 7590 residues, 23 models selected
> select subtract #10
53250 atoms, 54178 bonds, 8011 pseudobonds, 6747 residues, 22 models selected
> select subtract #9
46615 atoms, 47436 bonds, 7036 pseudobonds, 5904 residues, 21 models selected
> select subtract #8
39980 atoms, 40694 bonds, 6134 pseudobonds, 5061 residues, 20 models selected
> select subtract #7
33345 atoms, 33952 bonds, 5247 pseudobonds, 4218 residues, 19 models selected
> select subtract #6
28003 atoms, 28510 bonds, 4386 pseudobonds, 3543 residues, 17 models selected
> select subtract #5
22661 atoms, 23068 bonds, 3425 pseudobonds, 2868 residues, 14 models selected
> select subtract #4
17319 atoms, 17626 bonds, 2443 pseudobonds, 2193 residues, 11 models selected
> select subtract #3
11977 atoms, 12184 bonds, 1481 pseudobonds, 1518 residues, 8 models selected
> select subtract #2
5342 atoms, 5442 bonds, 559 pseudobonds, 675 residues, 5 models selected
> select /A:593
90 atoms, 80 bonds, 10 residues, 10 models selected
> show sel & #!1 cartoons
> select all
59885 atoms, 60920 bonds, 8951 pseudobonds, 7590 residues, 17 models selected
> hide sel & #!1 atoms
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> show sel & #!1 atoms
> select /A:3-20
1330 atoms, 1360 bonds, 6 pseudobonds, 180 residues, 11 models selected
> label (#!1 & sel) text "{0.name} {0.number}{0.insertion_code}"
> select /A:467
140 atoms, 150 bonds, 10 residues, 10 models selected
> select /A:467-470
350 atoms, 360 bonds, 11 pseudobonds, 40 residues, 11 models selected
> select /A:460-470
970 atoms, 990 bonds, 16 pseudobonds, 110 residues, 15 models selected
> select /A:460-480
1770 atoms, 1810 bonds, 151 pseudobonds, 210 residues, 15 models selected
> select add #11
1770 atoms, 1810 bonds, 176 pseudobonds, 210 residues, 22 models selected
> view clip false
> ui tool show Contacts
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> contacts sel saveFile /Users/lau/Desktop/COP1_contacts resSeparation 4 color
> #9d1700 radius 0.105 name contacts_2 reveal true
99163 contacts
> hide #12 models
> hide #11 models
Cell requested for row 3 is out of bounds for table with 18 rows! Resizing
table model.
> show #11 models
> hide #13 models
> show #13 models
> hide #13 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #7 models
> hide #7 models
> show #8 models
> hide #8 models
> show #9 models
> hide #9 models
> show #10 models
> hide #10 models
> show #!6 models
> hide #!6 models
> show #!5 models
> hide #!5 models
> show #12 models
> hide #12 models
> show #13 models
> hide #13 models
> show #13 models
> select /A
53420 atoms, 54420 bonds, 106213 pseudobonds, 6750 residues, 18 models
selected
> select clear
> show #!1 cartoons
> hide #!1 atoms
> hide #11 models
> hide #13 models
> show #11 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> show #13 models
> show #!1 atoms
> hide #!1 cartoons
> ui tool show Contacts
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> contacts sel saveFile /Users/lau/Desktop/contactsCOP1_closed resSeparation 4
> interModel false color #e03200 radius 0.105 reveal true
No atoms match given atom specifier
> contacts sel resSeparation 5 interModel false select true makePseudobonds
> false
No atoms match given atom specifier
> show #12 models
> hide #12 models
> show #12 models
> style #!1 ball
Changed 5342 atom styles
> select /A:1-7
550 atoms, 540 bonds, 5 pseudobonds, 70 residues, 11 models selected
> select /A:1-7
550 atoms, 540 bonds, 5 pseudobonds, 70 residues, 11 models selected
> hide sel & #!1 atoms
> select /A:15-200
14640 atoms, 14840 bonds, 1283 pseudobonds, 1860 residues, 13 models selected
> hide sel & #!1 atoms
> select /A:201-300
7890 atoms, 8020 bonds, 682 pseudobonds, 1000 residues, 11 models selected
> hide sel & #!1 atoms
> select /A:300-340
3380 atoms, 3410 bonds, 341 pseudobonds, 410 residues, 11 models selected
> hide sel & #!1 atoms
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> select /A:341-360
1650 atoms, 1670 bonds, 241 pseudobonds, 200 residues, 11 models selected
> hide sel & #!1 atoms
> select /A:340-350
870 atoms, 880 bonds, 199 pseudobonds, 110 residues, 11 models selected
> hide sel & #!1 atoms
> select /A:340-380
3340 atoms, 3400 bonds, 347 pseudobonds, 410 residues, 11 models selected
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:400-420
1600 atoms, 1620 bonds, 159 pseudobonds, 210 residues, 12 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> hide sel & #!1 atoms
> hide sel & #!1 cartoons
> select /A:600-675
5830 atoms, 5950 bonds, 1102 pseudobonds, 760 residues, 15 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:400-450
4020 atoms, 4110 bonds, 624 pseudobonds, 510 residues, 12 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:300-450
12150 atoms, 12370 bonds, 2053 pseudobonds, 1510 residues, 15 models selected
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:450-500
4130 atoms, 4200 bonds, 84864 pseudobonds, 510 residues, 12 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> select /A:450-470
1810 atoms, 1840 bonds, 39355 pseudobonds, 210 residues, 12 models selected
> show sel & #!1 cartoons
> select /A:450-464
1300 atoms, 1310 bonds, 17649 pseudobonds, 150 residues, 12 models selected
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:550-675
9810 atoms, 10010 bonds, 2098 pseudobonds, 1260 residues, 15 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> show sel & #!1 atoms
> hide sel & #!1 atoms
> show sel & #!1 atoms
> select /A:590-675
6610 atoms, 6740 bonds, 1304 pseudobonds, 860 residues, 15 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> hide #12 models
> select add #12
6610 atoms, 6740 bonds, 8908 pseudobonds, 860 residues, 21 models selected
> select subtract #12
6610 atoms, 6740 bonds, 4 pseudobonds, 860 residues, 20 models selected
> select add #2
12584 atoms, 12808 bonds, 248 pseudobonds, 1617 residues, 22 models selected
> select subtract #2
5949 atoms, 6066 bonds, 4 pseudobonds, 774 residues, 20 models selected
> select add #3
10630 atoms, 10834 bonds, 227 pseudobonds, 1363 residues, 19 models selected
> select subtract #3
5288 atoms, 5392 bonds, 3 pseudobonds, 688 residues, 16 models selected
> select add #4
9969 atoms, 10160 bonds, 226 pseudobonds, 1277 residues, 16 models selected
> select subtract #4
4627 atoms, 4718 bonds, 2 pseudobonds, 602 residues, 13 models selected
> select add #5
9308 atoms, 9486 bonds, 223 pseudobonds, 1191 residues, 13 models selected
> select subtract #5
3966 atoms, 4044 bonds, 1 pseudobond, 516 residues, 10 models selected
> select add #6
8647 atoms, 8812 bonds, 228 pseudobonds, 1105 residues, 10 models selected
> select subtract #6
3305 atoms, 3370 bonds, 430 residues, 7 models selected
> select add #7
9279 atoms, 9438 bonds, 262 pseudobonds, 1187 residues, 7 models selected
> select subtract #7
2644 atoms, 2696 bonds, 344 residues, 5 models selected
> select add #8
8618 atoms, 8764 bonds, 248 pseudobonds, 1101 residues, 6 models selected
> select subtract #8
1983 atoms, 2022 bonds, 258 residues, 4 models selected
> select add #9
7957 atoms, 8090 bonds, 241 pseudobonds, 1015 residues, 5 models selected
> select subtract #9
1322 atoms, 1348 bonds, 172 residues, 3 models selected
> select add #10
7296 atoms, 7416 bonds, 262 pseudobonds, 929 residues, 4 models selected
> select subtract #10
661 atoms, 674 bonds, 86 residues, 2 models selected
> select /A:593
90 atoms, 80 bonds, 10 residues, 10 models selected
> show sel & #!1 cartoons
> show sel & #!1 atoms
> show #12 models
> hide #13 models
> show #13 models
> hide #11 models
> show #11 models
> hide #11 models
> hide #13 models
> hide #12 models
> show #12 models
> hide #12 models
> show #11 models
> show #13 models
> select /A:590-600
850 atoms, 850 bonds, 9 pseudobonds, 110 residues, 11 models selected
> show sel & #!1 atoms
> select /A:465-500
2830 atoms, 2880 bonds, 61219 pseudobonds, 360 residues, 12 models selected
> show sel & #!1 cartoons
> select /A:465-490
2010 atoms, 2040 bonds, 59279 pseudobonds, 260 residues, 12 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> show sel & #!1 atoms
> select /A:465-480
1310 atoms, 1340 bonds, 55637 pseudobonds, 160 residues, 12 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> select /A:465-475
950 atoms, 970 bonds, 37900 pseudobonds, 110 residues, 12 models selected
> show sel & #!1 cartoons
> select A:14-464
Expected an objects specifier or a keyword
> select /A:14-464
35950 atoms, 36540 bonds, 22504 pseudobonds, 4510 residues, 17 models selected
> hide sel & #!1 atoms
> show sel & #!1 atoms
> hide sel & #!1 atoms
> show sel & #!1 atoms
> select /A:14
90 atoms, 80 bonds, 10 residues, 10 models selected
> select all
59885 atoms, 60920 bonds, 108111 pseudobonds, 7590 residues, 19 models
selected
> select /A:1-5
400 atoms, 390 bonds, 50 residues, 10 models selected
> select /A:1-5
400 atoms, 390 bonds, 50 residues, 10 models selected
> hide sel & #!1 atoms
> select /A:15-464
35860 atoms, 36450 bonds, 22502 pseudobonds, 4500 residues, 17 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:600-675
5830 atoms, 5950 bonds, 1102 pseudobonds, 760 residues, 15 models selected
> hide sel & #!1 atoms
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> ui tool show "Show Sequence Viewer"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> sequence chain #1/A #3/A #4/A #5/A #6/A #2/A #7/A #8/A #9/A #10/A
Alignment identifier is 1
> select #1/A:491 #3/A:491 #4/A:491 #5/A:491 #6/A:491 #2/A:491 #7/A:491
> #8/A:491 #9/A:491 #10/A:491
140 atoms, 150 bonds, 10 residues, 10 models selected
> select #1/A:491-507 #3/A:491-507 #4/A:491-507 #5/A:491-507 #6/A:491-507
> #2/A:491-507 #7/A:491-507 #8/A:491-507 #9/A:491-507 #10/A:491-507
1360 atoms, 1370 bonds, 52 pseudobonds, 170 residues, 11 models selected
. [ID: 1] region 10 chains [491-507] RMSD: 0.512
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> select /A:540-550
900 atoms, 930 bonds, 6 pseudobonds, 110 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:540-550
900 atoms, 930 bonds, 6 pseudobonds, 110 residues, 11 models selected
> select /A:540-550
900 atoms, 930 bonds, 6 pseudobonds, 110 residues, 11 models selected
> select /A:540-550
900 atoms, 930 bonds, 6 pseudobonds, 110 residues, 11 models selected
> select /A:469-490
1650 atoms, 1660 bonds, 42159 pseudobonds, 220 residues, 12 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:490-507
1430 atoms, 1440 bonds, 101 pseudobonds, 180 residues, 11 models selected
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:441
120 atoms, 120 bonds, 2 pseudobonds, 10 residues, 11 models selected
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> select /A:468
60 atoms, 50 bonds, 1444 pseudobonds, 10 residues, 12 models selected
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:465
110 atoms, 100 bonds, 2596 pseudobonds, 10 residues, 11 models selected
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> hide sel & #!1 atoms
> hide sel & #!1 cartoons
> select /A:466
50 atoms, 40 bonds, 1115 pseudobonds, 10 residues, 11 models selected
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:508
80 atoms, 70 bonds, 10 residues, 10 models selected
> hide sel & #!1 atoms
> show sel & #!1 atoms
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:509
60 atoms, 50 bonds, 10 residues, 10 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:510-525
1150 atoms, 1170 bonds, 178 pseudobonds, 160 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> show sel & #!1 cartoons
> select /A:539-550
960 atoms, 990 bonds, 9 pseudobonds, 120 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:510-525
1150 atoms, 1170 bonds, 178 pseudobonds, 160 residues, 11 models selected
> hide sel & #!1 cartoons
> select up
1290 atoms, 1310 bonds, 178 pseudobonds, 180 residues, 17 models selected
> select /A:470-490
1580 atoms, 1590 bonds, 38773 pseudobonds, 210 residues, 12 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> ui tool show Toolbar
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> select /A:8-14
490 atoms, 500 bonds, 70 residues, 10 models selected
> select sel : select sel : show sel & #!1 cartoons
> hide sel & #!1 cartoons
> select /A:8-14
490 atoms, 500 bonds, 70 residues, 10 models selected
> select sel : select /A:527-531
460 atoms, 480 bonds, 43 pseudobonds, 50 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:532-536
510 atoms, 520 bonds, 73 pseudobonds, 50 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 atoms
> hide sel & #!1 cartoons
> select /A:532-536
510 atoms, 520 bonds, 73 pseudobonds, 50 residues, 11 models selected
> select /A:532-538
670 atoms, 680 bonds, 92 pseudobonds, 70 residues, 11 models selected
> show sel & #!1 surfaces
> hide sel & #!1 surfaces
> show sel & #!1 cartoons
> select /A:532-539
730 atoms, 740 bonds, 128 pseudobonds, 80 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:578-590
1080 atoms, 1100 bonds, 9 pseudobonds, 130 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:569-575
620 atoms, 630 bonds, 47 pseudobonds, 70 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:577
70 atoms, 60 bonds, 10 residues, 10 models selected
> hide sel & #!1 atoms
> select /A:578
90 atoms, 80 bonds, 10 residues, 10 models selected
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:576
80 atoms, 70 bonds, 10 residues, 10 models selected
> hide sel & #!1 atoms
> select /A:560-567
550 atoms, 540 bonds, 9 pseudobonds, 80 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:559-553
Nothing selected
> select /A:553-559
590 atoms, 600 bonds, 9 pseudobonds, 70 residues, 11 models selected
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:595-559
Nothing selected
> select /A:595-599
370 atoms, 370 bonds, 1 pseudobond, 50 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:594-599
450 atoms, 450 bonds, 1 pseudobond, 60 residues, 11 models selected
> hide sel & #!1 cartoons
> hide sel & #!1 atoms
> select /A:552
70 atoms, 60 bonds, 10 residues, 10 models selected
> hide sel & #!1 atoms
> select /A:592
90 atoms, 80 bonds, 10 residues, 10 models selected
> hide sel & #!1 atoms
> select /A:591
80 atoms, 70 bonds, 10 residues, 10 models selected
> hide sel & #!1 atoms
> select /A:593
90 atoms, 80 bonds, 10 residues, 10 models selected
> hide sel & #!1 atoms
> show sel & #!1 atoms
> select /A
53420 atoms, 54420 bonds, 106213 pseudobonds, 6750 residues, 18 models
selected
> show sel & #!1 surfaces
> transparency (#!1 & sel) 90
> show sel & #!1 cartoons
> select /A:465
110 atoms, 100 bonds, 2596 pseudobonds, 10 residues, 11 models selected
> color (#!1 & sel) blue
> hide sel & #!1 atoms
> show sel & #!1 atoms
> hide sel & #!1 atoms
> select /A:464
90 atoms, 80 bonds, 2349 pseudobonds, 10 residues, 11 models selected
> hide sel & #!1 atoms
> show sel & #!1 atoms
> hide sel & #!1 atoms
> show sel & #!1 atoms
> hide sel & #!1 atoms
> show sel & #!1 atoms
> hide sel & #!1 atoms
> select /A:458
90 atoms, 80 bonds, 10 residues, 10 models selected
> show sel & #!1 atoms
> hide sel & #!1 atoms
> select /A:459
120 atoms, 120 bonds, 10 residues, 10 models selected
> show sel & #!1 atoms
> hide sel & #!1 atoms
> select /A:528
100 atoms, 100 bonds, 10 residues, 10 models selected
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> select /A:441
120 atoms, 120 bonds, 2 pseudobonds, 10 residues, 11 models selected
> ui tool show "Color Actions"
> color sel royal blue
> select /A:441
120 atoms, 120 bonds, 2 pseudobonds, 10 residues, 11 models selected
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> select /A:492
60 atoms, 50 bonds, 10 residues, 10 models selected
> select /A:392
60 atoms, 50 bonds, 2 pseudobonds, 10 residues, 11 models selected
> show sel & #!1 cartoons
> hide sel & #!1 cartoons
> show sel & #!1 cartoons
> select /A:370
60 atoms, 50 bonds, 2 pseudobonds, 10 residues, 11 models selected
> select /A:467
140 atoms, 150 bonds, 5216 pseudobonds, 10 residues, 11 models selected
> show sel & #!1 atoms
> hide sel & #!1 atoms
> show sel & #!1 atoms
> ui tool show "Color Actions"
> color sel royal blue
> select /A:467,593
230 atoms, 230 bonds, 5216 pseudobonds, 20 residues, 11 models selected
> color sel medium spring green
> select /A:467,593,568
300 atoms, 290 bonds, 5221 pseudobonds, 30 residues, 12 models selected
> color sel medium aquamarine
> color sel medium spring green
> select /A:467,593,568,551
350 atoms, 330 bonds, 5242 pseudobonds, 40 residues, 12 models selected
> color sel medium spring green
> select /A:467,593,568,551,526
400 atoms, 370 bonds, 5242 pseudobonds, 50 residues, 12 models selected
> color sel medium spring green
> label (#!1 & sel) text "{0.name} {0.number}{0.insertion_code}"
> select /A
53420 atoms, 54420 bonds, 106213 pseudobonds, 6750 residues, 18 models
selected
> hide sel & #!1 surfaces
> select clear
> lighting simple
> lighting shadows true
> select A:3-8
Expected an objects specifier or a keyword
> select /A:3-8
450 atoms, 450 bonds, 5 pseudobonds, 60 residues, 11 models selected
> ~label (#!1 & sel) residues
> ui tool show "Side View"
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-22.5.11
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 2022.140.5.0.0 (iBridge: 21.16.6074.0.0,0)
OS Loader Version: 580.140.1~8
Software:
System Software Overview:
System Version: macOS 14.6.1 (23G93)
Kernel Version: Darwin 23.6.0
Time since boot: 25 days, 14 hours, 27 minutes
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2425:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: BNPC304
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: DVI or HDMI
Adapter Firmware Version: 7.55
DELL P2425:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 59.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 1CRC304
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 14 months ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 14 months ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655 |
Note:
See TracTickets
for help on using tickets.
Crash in Apple's Intel graphics driver.