toolshed install: Non-existent wheel file

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22621
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/said.a/Downloads/cryosparc_P1_J404_map_sharp.mrc

Opened cryosparc_P1_J404_map_sharp.mrc as #1, grid size 256,256,256, pixel
1.33, shown at level 0.12, step 1, values float32  

> volume #1 level 0.297

> open 6uz3

Summary of feedback from opening 6uz3 fetched from pdb  
---  
notes | Fetching compressed mmCIF 6uz3 from http://files.rcsb.org/download/6uz3.cif  
Fetching CCD NAG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/NAG/NAG.cif  
Fetching CCD BMA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/BMA/BMA.cif  
Fetching CCD 9Z9 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/9/9Z9/9Z9.cif  
Fetching CCD 6OU from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/U/6OU/6OU.cif  
  
6uz3 title:  
Cardiac sodium channel [more info...]  
  
Chain information for 6uz3 #2  
---  
Chain | Description | UniProt  
A | Sodium channel protein type 5 subunit alpha,Green fluorescent protein | SCN5A_RAT 1-1898, GFP_AEQVI 1910-2146  
  
Non-standard residues in 6uz3 #2  
---  
6OU — [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-
propan-2-yl] (~{Z})-octadec-9-enoate  
9Z9 —
(3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en  
BMA — beta-D-mannopyranose  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose  
  

> select add #2

9446 atoms, 9682 bonds, 7 pseudobonds, 1151 residues, 2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.80877,-0.49587,0.31623,45.727,-0.35634,0.014579,0.93424,44.109,-0.46787,-0.86828,-0.16491,342.86

> view matrix models
> #2,0.10407,-0.26816,-0.95774,292.09,0.16753,-0.94448,0.28265,192.45,-0.98036,-0.18986,-0.05337,306.79

> view matrix models
> #2,-0.21927,-0.37026,-0.90268,341.11,0.3205,-0.90118,0.2918,164.9,-0.92152,-0.22533,0.31627,250.86

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.21927,-0.37026,-0.90268,352.28,0.3205,-0.90118,0.2918,205.56,-0.92152,-0.22533,0.31627,275.53

> view matrix models
> #2,-0.21927,-0.37026,-0.90268,351.78,0.3205,-0.90118,0.2918,204.53,-0.92152,-0.22533,0.31627,281.62

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.28807,-0.38493,-0.87684,359.27,0.083312,-0.92226,0.3775,226.96,-0.95398,0.035693,0.29774,254.36

> view matrix models
> #2,-0.26554,-0.33831,-0.90279,353.82,0.061084,-0.94043,0.33444,238.47,-0.96216,0.033661,0.27038,259.63

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.26554,-0.33831,-0.90279,354.66,0.061084,-0.94043,0.33444,241.39,-0.96216,0.033661,0.27038,260.33

> view matrix models
> #2,-0.26554,-0.33831,-0.90279,373.15,0.061084,-0.94043,0.33444,234.72,-0.96216,0.033661,0.27038,260.31

> fitmap #2 inMap #1

Fit molecule 6uz3 (#2) to map cryosparc_P1_J404_map_sharp.mrc (#1) using 9446
atoms  
average map value = 0.3465, steps = 132  
shifted from previous position = 2.87  
rotated from previous position = 22.7 degrees  
atoms outside contour = 4639, contour level = 0.29701  
  
Position of 6uz3 (#2) relative to cryosparc_P1_J404_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.28145883 0.03330473 -0.95899516 333.94305932  
-0.15782134 -0.98739442 0.01202853 318.81298464  
-0.94650587 0.15473544 0.28316708 239.70072223  
Axis 0.59746927 -0.05228879 -0.80018520  
Axis point 268.38019619 138.86958428 -0.00000000  
Rotation angle (degrees) 173.14101484  
Shift along axis -8.95460061  
  

> select ::name="6OU"

290 atoms, 279 bonds, 11 residues, 1 model selected  

> color sel byhetero

> delete atoms sel

> delete bonds sel

> select ::name="9Z9"::name="BMA"::name="NAG"

269 atoms, 296 bonds, 14 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> view

> view orient

> transparency 50

> set bgColor white

> set bgColor black

> select ::name="ARG"

444 atoms, 403 bonds, 42 residues, 1 model selected  

> show sel atoms

> color sel red

> select ::name="LYS"

423 atoms, 379 bonds, 51 residues, 1 model selected  

> show sel atoms

> color sel orange

> select clear

> hide #!1 models

> show #!1 models

> select ::name="TYR"

497 atoms, 500 bonds, 42 residues, 1 model selected  

> select ::name="TRP"

336 atoms, 361 bonds, 24 residues, 1 model selected  

> select clear

> select #1

2 models selected  

> hide #!1 models

> select /A:1273

14 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> show #!1 models

> toolshed show

Downloading bundle ChimeraX_ISOLDE-1.8-cp311-cp311-win_amd64.whl  
[Repeated 3 time(s)]

> open C:/Users/said.a/Downloads/ChimeraX_ISOLDE-1.8-cp311-cp311-win_amd64.whl

Unrecognized file suffix '.whl'  

> volume showOutlineBox true

> volume showOutlineBox false

> transparency 0

> select clear

> toolshed install ChimeraX_ISOLDE-1.8-cp311-cp311-win_amd64.whl

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\commands\toolshed.py", line 312, in toolshed_install  
ts.install_bundle(bundles, logger, **kw)  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 931, in install_bundle  
_install_bundle(self, bundle, logger, per_user=per_user, reinstall=reinstall,
session=session, no_deps=no_deps)  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\toolshed_utils\\__init__.py", line 216, in _install_bundle  
raise ValueError("Non-existent wheel file")  
ValueError: Non-existent wheel file  
  
ValueError: Non-existent wheel file  
  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\toolshed_utils\\__init__.py", line 216, in _install_bundle  
raise ValueError("Non-existent wheel file")  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 10.18.10.5161
OpenGL renderer: Intel(R) HD Graphics 4000
OpenGL vendor: Intel

Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: windows

Manufacturer: LENOVO
Model: 20AX0001US
OS: Microsoft Windows 11 Education (Build 22621)
Memory: 8,417,378,304
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i5-3337U CPU @ 1.80GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2024.6.2
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.1
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 24.1
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pywin32: 306
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
    WMI: 1.5.1

[Eric Pettersen]

Seems like it could be a UserError instead