#16086 closed defect (can't reproduce)

glBufferData: out of memory

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\\\Users\\\LongChen\\\OneDrive -
> Nexus365\\\Laptop\\\Research202408\\\Research_Dave\\\MR_collaboration\\\modelbldg\\\models\\\8bp8_vp2And6_fit2_crop100_map_delele4_Plus_6oj4_VP2_ends_Plus_muted_vp1_sym.pdb"

Chain information for
8bp8_vp2And6_fit2_crop100_map_delele4_Plus_6oj4_VP2_ends_Plus_muted_vp1_sym.pdb  
---  
Chain | Description  
1.1/d 1.2/d 1.3/d 1.4/d 1.5/d 1.6/d 1.7/d 1.8/d 1.9/d 1.10/d 1.11/d 1.12/d
1.13/d 1.14/d 1.15/d 1.16/d 1.17/d 1.18/d 1.19/d 1.20/d 1.21/d 1.22/d 1.23/d
1.24/d 1.25/d 1.26/d 1.27/d 1.28/d 1.29/d 1.30/d 1.31/d 1.32/d 1.33/d 1.34/d
1.35/d 1.36/d 1.37/d 1.38/d 1.39/d 1.40/d 1.41/d 1.42/d 1.43/d 1.44/d 1.45/d
1.46/d 1.47/d 1.48/d 1.49/d 1.50/d 1.51/d 1.52/d 1.53/d 1.54/d 1.55/d 1.56/d
1.57/d 1.58/d 1.59/d 1.60/d 1.61/d 1.1/e 1.2/e 1.3/e 1.4/e 1.5/e 1.6/e 1.7/e
1.8/e 1.9/e 1.10/e 1.11/e 1.12/e 1.13/e 1.14/e 1.15/e 1.16/e 1.17/e 1.18/e
1.19/e 1.20/e 1.21/e 1.22/e 1.23/e 1.24/e 1.25/e 1.26/e 1.27/e 1.28/e 1.29/e
1.30/e 1.31/e 1.32/e 1.33/e 1.34/e 1.35/e 1.36/e 1.37/e 1.38/e 1.39/e 1.40/e
1.41/e 1.42/e 1.43/e 1.44/e 1.45/e 1.46/e 1.47/e 1.48/e 1.49/e 1.50/e 1.51/e
1.52/e 1.53/e 1.54/e 1.55/e 1.56/e 1.57/e 1.58/e 1.59/e 1.60/e 1.61/e 1.1/f
1.2/f 1.3/f 1.4/f 1.5/f 1.6/f 1.7/f 1.8/f 1.9/f 1.10/f 1.11/f 1.12/f 1.13/f
1.14/f 1.15/f 1.16/f 1.17/f 1.18/f 1.19/f 1.20/f 1.21/f 1.22/f 1.23/f 1.24/f
1.25/f 1.26/f 1.27/f 1.28/f 1.29/f 1.30/f 1.31/f 1.32/f 1.33/f 1.34/f 1.35/f
1.36/f 1.37/f 1.38/f 1.39/f 1.40/f 1.41/f 1.42/f 1.43/f 1.44/f 1.45/f 1.46/f
1.47/f 1.48/f 1.49/f 1.50/f 1.51/f 1.52/f 1.53/f 1.54/f 1.55/f 1.56/f 1.57/f
1.58/f 1.59/f 1.60/f 1.61/f 1.1/g 1.2/g 1.3/g 1.4/g 1.5/g 1.6/g 1.7/g 1.8/g
1.9/g 1.10/g 1.11/g 1.12/g 1.13/g 1.14/g 1.15/g 1.16/g 1.17/g 1.18/g 1.19/g
1.20/g 1.21/g 1.22/g 1.23/g 1.24/g 1.25/g 1.26/g 1.27/g 1.28/g 1.29/g 1.30/g
1.31/g 1.32/g 1.33/g 1.34/g 1.35/g 1.36/g 1.37/g 1.38/g 1.39/g 1.40/g 1.41/g
1.42/g 1.43/g 1.44/g 1.45/g 1.46/g 1.47/g 1.48/g 1.49/g 1.50/g 1.51/g 1.52/g
1.53/g 1.54/g 1.55/g 1.56/g 1.57/g 1.58/g 1.59/g 1.60/g 1.61/g 1.1/h 1.2/h
1.3/h 1.4/h 1.5/h 1.6/h 1.7/h 1.8/h 1.9/h 1.10/h 1.11/h 1.12/h 1.13/h 1.14/h
1.15/h 1.16/h 1.17/h 1.18/h 1.19/h 1.20/h 1.21/h 1.22/h 1.23/h 1.24/h 1.25/h
1.26/h 1.27/h 1.28/h 1.29/h 1.30/h 1.31/h 1.32/h 1.33/h 1.34/h 1.35/h 1.36/h
1.37/h 1.38/h 1.39/h 1.40/h 1.41/h 1.42/h 1.43/h 1.44/h 1.45/h 1.46/h 1.47/h
1.48/h 1.49/h 1.50/h 1.51/h 1.52/h 1.53/h 1.54/h 1.55/h 1.56/h 1.57/h 1.58/h
1.59/h 1.60/h 1.61/h 1.1/i 1.2/i 1.3/i 1.4/i 1.5/i 1.6/i 1.7/i 1.8/i 1.9/i
1.10/i 1.11/i 1.12/i 1.13/i 1.14/i 1.15/i 1.16/i 1.17/i 1.18/i 1.19/i 1.20/i
1.21/i 1.22/i 1.23/i 1.24/i 1.25/i 1.26/i 1.27/i 1.28/i 1.29/i 1.30/i 1.31/i
1.32/i 1.33/i 1.34/i 1.35/i 1.36/i 1.37/i 1.38/i 1.39/i 1.40/i 1.41/i 1.42/i
1.43/i 1.44/i 1.45/i 1.46/i 1.47/i 1.48/i 1.49/i 1.50/i 1.51/i 1.52/i 1.53/i
1.54/i 1.55/i 1.56/i 1.57/i 1.58/i 1.59/i 1.60/i 1.61/i 1.1/j 1.2/j 1.3/j
1.4/j 1.5/j 1.6/j 1.7/j 1.8/j 1.9/j 1.10/j 1.11/j 1.12/j 1.13/j 1.14/j 1.15/j
1.16/j 1.17/j 1.18/j 1.19/j 1.20/j 1.21/j 1.22/j 1.23/j 1.24/j 1.25/j 1.26/j
1.27/j 1.28/j 1.29/j 1.30/j 1.31/j 1.32/j 1.33/j 1.34/j 1.35/j 1.36/j 1.37/j
1.38/j 1.39/j 1.40/j 1.41/j 1.42/j 1.43/j 1.44/j 1.45/j 1.46/j 1.47/j 1.48/j
1.49/j 1.50/j 1.51/j 1.52/j 1.53/j 1.54/j 1.55/j 1.56/j 1.57/j 1.58/j 1.59/j
1.60/j 1.61/j 1.1/k 1.2/k 1.3/k 1.4/k 1.5/k 1.6/k 1.7/k 1.8/k 1.9/k 1.10/k
1.11/k 1.12/k 1.13/k 1.14/k 1.15/k 1.16/k 1.17/k 1.18/k 1.19/k 1.20/k 1.21/k
1.22/k 1.23/k 1.24/k 1.25/k 1.26/k 1.27/k 1.28/k 1.29/k 1.30/k 1.31/k 1.32/k
1.33/k 1.34/k 1.35/k 1.36/k 1.37/k 1.38/k 1.39/k 1.40/k 1.41/k 1.42/k 1.43/k
1.44/k 1.45/k 1.46/k 1.47/k 1.48/k 1.49/k 1.50/k 1.51/k 1.52/k 1.53/k 1.54/k
1.55/k 1.56/k 1.57/k 1.58/k 1.59/k 1.60/k 1.61/k 1.1/l 1.2/l 1.3/l 1.4/l 1.5/l
1.6/l 1.7/l 1.8/l 1.9/l 1.10/l 1.11/l 1.12/l 1.13/l 1.14/l 1.15/l 1.16/l
1.17/l 1.18/l 1.19/l 1.20/l 1.21/l 1.22/l 1.23/l 1.24/l 1.25/l 1.26/l 1.27/l
1.28/l 1.29/l 1.30/l 1.31/l 1.32/l 1.33/l 1.34/l 1.35/l 1.36/l 1.37/l 1.38/l
1.39/l 1.40/l 1.41/l 1.42/l 1.43/l 1.44/l 1.45/l 1.46/l 1.47/l 1.48/l 1.49/l
1.50/l 1.51/l 1.52/l 1.53/l 1.54/l 1.55/l 1.56/l 1.57/l 1.58/l 1.59/l 1.60/l
1.61/l 1.1/m 1.2/m 1.3/m 1.4/m 1.5/m 1.6/m 1.7/m 1.8/m 1.9/m 1.10/m 1.11/m
1.12/m 1.13/m 1.14/m 1.15/m 1.16/m 1.17/m 1.18/m 1.19/m 1.20/m 1.21/m 1.22/m
1.23/m 1.24/m 1.25/m 1.26/m 1.27/m 1.28/m 1.29/m 1.30/m 1.31/m 1.32/m 1.33/m
1.34/m 1.35/m 1.36/m 1.37/m 1.38/m 1.39/m 1.40/m 1.41/m 1.42/m 1.43/m 1.44/m
1.45/m 1.46/m 1.47/m 1.48/m 1.49/m 1.50/m 1.51/m 1.52/m 1.53/m 1.54/m 1.55/m
1.56/m 1.57/m 1.58/m 1.59/m 1.60/m 1.61/m 1.1/n 1.2/n 1.3/n 1.4/n 1.5/n 1.6/n
1.7/n 1.8/n 1.9/n 1.10/n 1.11/n 1.12/n 1.13/n 1.14/n 1.15/n 1.16/n 1.17/n
1.18/n 1.19/n 1.20/n 1.21/n 1.22/n 1.23/n 1.24/n 1.25/n 1.26/n 1.27/n 1.28/n
1.29/n 1.30/n 1.31/n 1.32/n 1.33/n 1.34/n 1.35/n 1.36/n 1.37/n 1.38/n 1.39/n
1.40/n 1.41/n 1.42/n 1.43/n 1.44/n 1.45/n 1.46/n 1.47/n 1.48/n 1.49/n 1.50/n
1.51/n 1.52/n 1.53/n 1.54/n 1.55/n 1.56/n 1.57/n 1.58/n 1.59/n 1.60/n 1.61/n
1.1/o 1.2/o 1.3/o 1.4/o 1.5/o 1.6/o 1.7/o 1.8/o 1.9/o 1.10/o 1.11/o 1.12/o
1.13/o 1.14/o 1.15/o 1.16/o 1.17/o 1.18/o 1.19/o 1.20/o 1.21/o 1.22/o 1.23/o
1.24/o 1.25/o 1.26/o 1.27/o 1.28/o 1.29/o 1.30/o 1.31/o 1.32/o 1.33/o 1.34/o
1.35/o 1.36/o 1.37/o 1.38/o 1.39/o 1.40/o 1.41/o 1.42/o 1.43/o 1.44/o 1.45/o
1.46/o 1.47/o 1.48/o 1.49/o 1.50/o 1.51/o 1.52/o 1.53/o 1.54/o 1.55/o 1.56/o
1.57/o 1.58/o 1.59/o 1.60/o 1.61/o 1.1/p 1.2/p 1.3/p 1.4/p 1.5/p 1.6/p 1.7/p
1.8/p 1.9/p 1.10/p 1.11/p 1.12/p 1.13/p 1.14/p 1.15/p 1.16/p 1.17/p 1.18/p
1.19/p 1.20/p 1.21/p 1.22/p 1.23/p 1.24/p 1.25/p 1.26/p 1.27/p 1.28/p 1.29/p
1.30/p 1.31/p 1.32/p 1.33/p 1.34/p 1.35/p 1.36/p 1.37/p 1.38/p 1.39/p 1.40/p
1.41/p 1.42/p 1.43/p 1.44/p 1.45/p 1.46/p 1.47/p 1.48/p 1.49/p 1.50/p 1.51/p
1.52/p 1.53/p 1.54/p 1.55/p 1.56/p 1.57/p 1.58/p 1.59/p 1.60/p 1.61/p | No
description available  
1.1/q 1.2/q 1.3/q 1.4/q 1.5/q 1.6/q 1.7/q 1.8/q 1.9/q 1.10/q 1.11/q 1.12/q
1.13/q 1.14/q 1.15/q 1.16/q 1.17/q 1.18/q 1.19/q 1.20/q 1.21/q 1.22/q 1.23/q
1.24/q 1.25/q 1.26/q 1.27/q 1.28/q 1.29/q 1.30/q 1.31/q 1.32/q 1.33/q 1.34/q
1.35/q 1.36/q 1.37/q 1.38/q 1.39/q 1.40/q 1.41/q 1.42/q 1.43/q 1.44/q 1.45/q
1.46/q 1.47/q 1.48/q 1.49/q 1.50/q 1.51/q 1.52/q 1.53/q 1.54/q 1.55/q 1.56/q
1.57/q 1.58/q 1.59/q 1.60/q 1.61/q | No description available  
1.1/r 1.2/r 1.3/r 1.4/r 1.5/r 1.6/r 1.7/r 1.8/r 1.9/r 1.10/r 1.11/r 1.12/r
1.13/r 1.14/r 1.15/r 1.16/r 1.17/r 1.18/r 1.19/r 1.20/r 1.21/r 1.22/r 1.23/r
1.24/r 1.25/r 1.26/r 1.27/r 1.28/r 1.29/r 1.30/r 1.31/r 1.32/r 1.33/r 1.34/r
1.35/r 1.36/r 1.37/r 1.38/r 1.39/r 1.40/r 1.41/r 1.42/r 1.43/r 1.44/r 1.45/r
1.46/r 1.47/r 1.48/r 1.49/r 1.50/r 1.51/r 1.52/r 1.53/r 1.54/r 1.55/r 1.56/r
1.57/r 1.58/r 1.59/r 1.60/r 1.61/r | No description available  
1.1/s 1.2/s 1.3/s 1.4/s 1.5/s 1.6/s 1.7/s 1.8/s 1.9/s 1.10/s 1.11/s 1.12/s
1.13/s 1.14/s 1.15/s 1.16/s 1.17/s 1.18/s 1.19/s 1.20/s 1.21/s 1.22/s 1.23/s
1.24/s 1.25/s 1.26/s 1.27/s 1.28/s 1.29/s 1.30/s 1.31/s 1.32/s 1.33/s 1.34/s
1.35/s 1.36/s 1.37/s 1.38/s 1.39/s 1.40/s 1.41/s 1.42/s 1.43/s 1.44/s 1.45/s
1.46/s 1.47/s 1.48/s 1.49/s 1.50/s 1.51/s 1.52/s 1.53/s 1.54/s 1.55/s 1.56/s
1.57/s 1.58/s 1.59/s 1.60/s 1.61/s | No description available  
  

> ui tool show "Side View"

> show cartoons

An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1285,  
description = b'out of memory',  
baseOperation = glBufferData,  
pyArgs = (  
34963,  
40432464,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
),  
cArgs = (  
34963,  
40432464,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
),  
cArguments = (  
34963,  
40432464,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
)  
)  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\updateloop.py", line 84, in draw_new_frame  
view.draw(check_for_changes = False)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\view.py", line 188, in draw  
self._draw_scene(camera, drawings)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\view.py", line 258, in _draw_scene  
draw_opaque(r, opaque_drawings)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1554, in draw_opaque  
_draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1567, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 780, in draw  
self.draw_self(renderer, draw_pass)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 787, in draw_self  
self._draw_geometry(renderer, opaque_only = any_transp)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 814, in _draw_geometry  
ds.activate_bindings(renderer)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1924, in activate_bindings  
self.update_buffers()  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1912, in update_buffers  
b.update_buffer_data(data)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 2742, in update_buffer_data  
GL.glBufferData(btype, size, d, GL.GL_STATIC_DRAW)  
File "src\\\latebind.pyx", line 51, in
OpenGL_accelerate.latebind.Curry.__call__  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\OpenGL\GL\VERSION\GL_1_5.py", line 89, in glBufferData  
return baseOperation( target, size, data, usage )  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "src\\\latebind.pyx", line 39, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src\\\wrapper.pyx", line 318, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src\\\wrapper.pyx", line 311, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src\\\errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'out of memory',  
baseOperation = glBufferData,  
pyArgs = (  
34963,  
40432464,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
),  
cArgs = (  
34963,  
40432464,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
),  
cArguments = (  
34963,  
40432464,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
)  
)  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\sideview\tool.py", line 113, in _redraw  
self.render()  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\sideview\tool.py", line 288, in render  
self.view.draw()  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\view.py", line 188, in draw  
self._draw_scene(camera, drawings)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\view.py", line 258, in _draw_scene  
draw_opaque(r, opaque_drawings)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1554, in draw_opaque  
_draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1567, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 780, in draw  
self.draw_self(renderer, draw_pass)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 787, in draw_self  
self._draw_geometry(renderer, opaque_only = any_transp)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 814, in _draw_geometry  
ds.activate_bindings(renderer)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1924, in activate_bindings  
self.update_buffers()  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1912, in update_buffers  
b.update_buffer_data(data)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 2739, in update_buffer_data  
d = data.astype(self.value_type, order = 'C')  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 38.6 MiB for an
array with shape (3369372, 3) and data type uint32  
  
Error processing trigger "frame drawn":  
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 38.6 MiB for an
array with shape (3369372, 3) and data type uint32  
  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 2739, in update_buffer_data  
d = data.astype(self.value_type, order = 'C')  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 556.12
OpenGL renderer: NVIDIA GeForce GTX 1650/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_GB.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: Dell Inc.
Model: XPS 15 7590
OS: Microsoft Windows 11 Education (Build 22631)
Memory: 16,893,698,048
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.16
    annotated-types: 0.7.0
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.4.7
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    comtypes: 1.1.14
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    geomdl: 5.3.1
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    pandas: 2.2.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pyarrow: 17.0.0
    pycollada: 0.7.2
    pydantic: 2.8.2
    pydantic-core: 2.20.1
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pywin32: 305
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    starfile: 0.5.8
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9
    WMI: 1.5.1

Change History (2)

comment:1 by pett, 13 months ago

Component: UnassignedGraphics
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionglBufferData: out of memory

comment:2 by Tom Goddard, 13 months ago

Resolution: can't reproduce
Status: assignedclosed

OpenGL out of memory error allocating a 40 Mbyte buffer to show ribbons of a huge structure. Unclear how it could run out of memory with such a tiny allocation with a graphics card that has 4 Gbytes of memory. I guess this is the Windows ChimeraX 1.7 bug where it uses up all of memory just opening an atomic model.

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