Opened 13 months ago
Closed 13 months ago
#15983 closed defect (can't reproduce)
Cannot open PDB file for writing
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Input/Output | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.22621 ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- warning | Your computer has Intel graphics driver 9565 with a known bug that causes all Qt user interface panels to be blank. ChimeraX can partially fix this but may make some panel titlebars and edges black. Hopefully newer Intel graphics drivers will fix this. UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > D:\\\WJF-709\\\ZNF384\\\ZNF384_complex_DNA\\\2024-9-20结构预测\\\fold_2024_05_16_10_22_znf384_3\\\fold_2024_05_16_10_22_znf384_3_model_0.cif Chain information for fold_2024_05_16_10_22_znf384_3_model_0.cif #1 --- Chain | Description A | . B | . C | . > save D:/WJF-709/ZNF384/ZNF384_complex_DNA/2024-9-20结构预测/ZNF384_3.pdb Traceback (most recent call last): File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site-packages\chimerax\ui\gui.py", line 1541, in <lambda> action.triggered.connect(lambda arg, cb = callback: cb()) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\dialog.py", line 102, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog _dlg.display(session, **kw) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\dialog.py", line 48, in display run(session, cmd) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\run.py", line 31, in run results = command.run(text, log=log) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 79, in provider_save mgr).save(session, path, **provider_kw) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\pdb\\__init__.py", line 70, in save pdb.save_pdb(session, path, **kw) File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\pdb\pdb.py", line 119, in save_pdb (serial_numbering == "h36"), polymeric_res_names) OSError: Unable to open file 'D:/WJF-709/ZNF384/ZNF384_complex_DNA/2024-9-20结构预测/ZNF384_3.pdb' for writing OSError: Unable to open file 'D:/WJF-709/ZNF384/ZNF384_complex_DNA/2024-9-20结构预测/ZNF384_3.pdb' for writing File "D:\Chimera-X\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\pdb\pdb.py", line 119, in save_pdb (serial_numbering == "h36"), polymeric_res_names) See log for complete Python traceback. OpenGL version: 3.3.0 - Build 27.20.100.9565 OpenGL renderer: Intel(R) Iris(R) Xe Graphics OpenGL vendor: Intel Manufacturer: HUAWEI Model: MACHD-WXX9 OS: Microsoft Windows 11 家庭中文版 (Build 22631) Memory: 16,969,424,896 MaxProcessMemory: 137,438,953,344 CPU: 8 11th Gen Intel(R) Core(TM) i7-1165G7 @ 2.80GHz" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 13 months ago
Component: | Unassigned → Input/Output |
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Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Cannot open PDB file for writing |
comment:2 by , 13 months ago
Resolution: | → can't reproduce |
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Status: | accepted → closed |
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Version 1.0; this throws IOError nowadays