![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 14 months ago
Closed 14 months ago
#15909 closed defect (nonchimerax)
Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.6.1-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x00007ff84a2ca700 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 248 in swap_buffers
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 556 in swap_buffers
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 202 in draw
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 84 in draw_new_frame
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 150 in _redraw_timer_callback
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, pyarrow.lib, pandas._libs.tslibs.ccalendar, pandas._libs.tslibs.np_datetime, pandas._libs.tslibs.dtypes, pandas._libs.tslibs.base, pandas._libs.tslibs.nattype, pandas._libs.tslibs.timezones, pandas._libs.tslibs.fields, pandas._libs.tslibs.timedeltas, pandas._libs.tslibs.tzconversion, pandas._libs.tslibs.timestamps, pandas._libs.properties, pandas._libs.tslibs.offsets, pandas._libs.tslibs.strptime, pandas._libs.tslibs.parsing, pandas._libs.tslibs.conversion, pandas._libs.tslibs.period, pandas._libs.tslibs.vectorized, pandas._libs.ops_dispatch, pandas._libs.missing, pandas._libs.hashtable, pandas._libs.algos, pandas._libs.interval, pandas._libs.lib, pyarrow._compute, pandas._libs.ops, numexpr.interpreter, pandas._libs.hashing, pandas._libs.arrays, pandas._libs.tslib, pandas._libs.sparse, pandas._libs.internals, pandas._libs.indexing, pandas._libs.index, pandas._libs.writers, pandas._libs.join, pandas._libs.window.aggregations, pandas._libs.window.indexers, pandas._libs.reshape, pandas._libs.groupby, pandas._libs.json, pandas._libs.parsers, pandas._libs.testing, chimerax.atomic._ribbons, chimerax.graphics._graphics, PIL._imagingmath (total: 93)
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{
"uptime" : 48000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 502,
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"modelCode" : "MacBookPro16,2",
"coalitionID" : 699,
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"build" : "22G313",
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"captureTime" : "2024-09-09 04:50:15.9148 +0200",
"incident" : "D264E3B2-B06F-4831-A412-CCF947F3ADDD",
"pid" : 586,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-09-08 15:27:19.8537 +0200",
"procStartAbsTime" : 77167035600,
"procExitAbsTime" : 48254363801573,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"E9828D1F-29D0-5229-9E54-DD6C11856797","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "662A84EE-24FC-7EBE-4886-7F395D0EDCA9",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"bridgeVersion" : {"build":"21P1069","train":"8.1"},
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"termination" : {"flags":0,"code":6,"namespace":"SIGNAL","indicator":"Abort trap: 6","byProc":"ChimeraX","byPid":586},
"asi" : {"libsystem_c.dylib":["abort() called"]},
"asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000011\n"],
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"faultingThread" : 0,
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===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> artiax start
Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
Opened 08064_combined_mito_segs.mrc as #1.1.1, grid size 505,720,250, pixel
8,8,8, shown at level 1, step 1, values int8
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
> hide #!1.1.1 models
> open
> /Users/redzovicj/Documents/01cryoEM_lit/filtered_ribosomes_from_02-09-24_09-59.star
> format star
Opened Particle list filtered_ribosomes_from_02-09-24_09-59.star with 134996
particles.
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> artiax particles #1.2.1 originScaleFactor 2.682
> artiax view xy
> artiax particles #1.2.1 transScaleFactor 1.0
> artiax view xy
> artiax particles #1.2.1 transScaleFactor 2.682
> artiax view xy
> artiax tomo #1.1.1 pixelSize 21.456
> artiax view xy
> artiax tomo #1.1.1 pixelSize 21.456
> artiax view xy
> show #!1.1.1 models
> volume #1.1.1 style surface
> volume #1.1.1 level 0.09832
> show #!1.1 target m
> set bgColor white
> volume #1.1.1 color #945200
> view #1.1.1 clip false
> volume #1.1.1 color #005493
> volume #1.1.1 color #0096ff
> volume #1.1.1 color #0433ff
> volume #1.1.1 color #531b93
> volume #1.1.1 color #942193
> volume #1.1.1 color #9437ff
> volume #1.1.1 color #ff40ff
> select #1.1.1
3 models selected
> select #1.1.1
3 models selected
> vop gaussian #1.1.1 sdev 64.4
Opened 08064_combined_mito_segs.mrc gaussian as #2, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #2 level 0.03137
> view #1.1.1.2 clip false
No displayed objects specified.
> view #2 clip false
> close #2
> show #!1.1.1 models
> hide #!1 models
> hide #1.1.1.1 models
> show #!1 models
> show #1.1.1.1 models
> hide #!1.2 models
Drag select of 1.1.1 08064_combined_mito_segs.mrc
> vop gaussian #1.1.1 sdev 64.4
Opened 08064_combined_mito_segs.mrc gaussian as #2, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #2 level 0.2526
> show #1.1.1.2 models
> vop gaussian #1.1.1
Opened 08064_combined_mito_segs.mrc gaussian as #3, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #3
> volume #3 change image level 0,0 level 1,0.8 level 2,1
> volume #3 level 0.2528
> vop gaussian #3
Opened 08064_combined_mito_segs.mrc gaussian as #4, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #4 level 0.06909
> vop gaussian 2 #3
> volume gaussian 2 #3
Missing or invalid "volumes" argument: invalid density maps specifier
> volume #4 style image imageMode "full region"
> volume #4 level 0,0 level 1,0.8 level 2,1
> volume #4 style mesh
> volume #4 style surface
> close #3
> close #2
> hide #1.1.1.1 models
> show #1.1.1.1 models
> hide #!1.1.1 models
> hide #!4 models
> vop gaussian #1.1.1 sdev 64.4
Opened 08064_combined_mito_segs.mrc gaussian as #2, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #2 level 0.6263
> volume #2 level 0.126
> volume #2 style mesh
> volume #2 style image imageMode "full region"
> close #4
> volume #2 level 0,0 level 0.1,0.8 level 1,1
> close #2
> vop gaussian #1.1.1.1
> vop gaussian #1
Opened 08064_combined_mito_segs.mrc gaussian as #2, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #2 level 0.03987
> surface smooth #1.1.1
> close #3
> close #4
> view #5 clip false
> vop gaussian #5
> show #!1.1.1 models
> vop gaussian #1.1.1
Opened 08064_combined_mito_segs.mrc gaussian as #3, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> hide #5 models
> volume #3 level 0.08997
> close #5
> close #2
> vop gaussian #3
Opened 08064_combined_mito_segs.mrc gaussian as #2, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #2 level 0.04822
> vop gaussian #3 sdev2
> volume gaussian #3 sdev2
Expected a keyword
> vop gaussian #3 sdev 2
Opened 08064_combined_mito_segs.mrc gaussian as #4, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #4 level 0.2194
> vop gaussian #3 sdev 20
Opened 08064_combined_mito_segs.mrc gaussian as #5, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #5 level 0.04389
> volume #5 level 0.09817
> vop gaussian #3 sdev 15
Opened 08064_combined_mito_segs.mrc gaussian as #6, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> volume #6 level 0.2484
> vop gaussian #3 sdev 100
Opened 08064_combined_mito_segs.mrc gaussian as #7, grid size 505,720,250,
pixel 21.5, shown at step 1, values int8
> close #2-7
Opened seg_mito1.mrc as #1.1.1, grid size 505,720,250, pixel 8,8,8, shown at
level 1, step 1, values float32
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
Opened seg_mito2.mrc as #1.1.2, grid size 505,720,250, pixel 8,8,8, shown at
level 5e-05, step 1, values float32
> artiax tomo #1.1.2 sliceDirection 0,0,1
> artiax view xy
> volume #1.1.2 style surface
> volume #1.1.1 style surface
> volume #1.1.1 level 0.03604
> vop gaussian #1.1.1 sdev 100
Opened seg_mito1.mrc gaussian as #2, grid size 505,720,250, pixel 8,8,8, shown
at step 1, values float32
> vop gaussian #1.1.1 sdev 40
Opened seg_mito1.mrc gaussian as #3, grid size 505,720,250, pixel 8,8,8, shown
at step 1, values float32
> close #2
> vop gaussian #1.1.1 sdev 10
Opened seg_mito1.mrc gaussian as #2, grid size 505,720,250, pixel 8,8,8, shown
at step 1, values float32
> vop gaussian #1.1.1 sdev 15
Opened seg_mito1.mrc gaussian as #4, grid size 505,720,250, pixel 8,8,8, shown
at step 1, values float32
> close #2
> close #3
> vop gaussian #1.1.2 sdev 15
Opened seg_mito2.mrc gaussian as #2, grid size 505,720,250, pixel 8,8,8, shown
at step 1, values float32
Opened 08064_combined_mito_segs.mrc as #1.1.3, grid size 505,720,250, pixel
8,8,8, shown at level 1, step 1, values int8
> artiax tomo #1.1.3 sliceDirection 0,0,1
> artiax view xy
> show #!1.1.2 models
> hide #!1.1.2 models
> artiax tomo #1.1.3 pixelSize 21.456
> artiax view xy
> artiax tomo #1.1.3 pixelSize 21.456
> artiax view xy
> artiax tomo #1.1.2 pixelSize 21.456
> artiax view xy
> artiax tomo #1.1.2 pixelSize 21.456
> artiax view xy
> hide #!1.1.3 models
> show #!1.1.2 models
> show #!1.1.1 models
> artiax tomo #1.1.1 pixelSize 21.456
> artiax view xy
> artiax tomo #1.1.1 pixelSize 21.456
> artiax view xy
> volume #1.1.1 style surface
> volume #1.1.2 style surface
> volume #1.1.3 style surface
> close #2,4
> vop gaussian #1.1.2 sdev 12
Opened seg_mito2.mrc gaussian as #2, grid size 505,720,250, pixel 21.5, shown
at step 1, values float32
> vop gaussian #1.1.2 sdev 15
Opened seg_mito2.mrc gaussian as #3, grid size 505,720,250, pixel 21.5, shown
at step 1, values float32
> close #2
> vop gaussian #1.1.2 sdev 20
Opened seg_mito2.mrc gaussian as #2, grid size 505,720,250, pixel 21.5, shown
at step 1, values float32
> vop gaussian #1.1.2 sdev 40
Opened seg_mito2.mrc gaussian as #4, grid size 505,720,250, pixel 21.5, shown
at step 1, values float32
> close #2-3
> vop gaussian #1.1.1 sdev 20
Opened seg_mito1.mrc gaussian as #2, grid size 505,720,250, pixel 21.5, shown
at step 1, values float32
> vop gaussian #1.1.1 sdev 69
Opened seg_mito1.mrc gaussian as #3, grid size 505,720,250, pixel 21.5, shown
at step 1, values float32
> vop gaussian #1.1.1 sdev 50
Opened seg_mito1.mrc gaussian as #5, grid size 505,720,250, pixel 21.5, shown
at step 1, values float32
> vop gaussian #1.1.1 sdev 43
Opened seg_mito1.mrc gaussian as #6, grid size 505,720,250, pixel 21.5, shown
at step 1, values float32
> close #2-3,5
> hide #!4 models
> hide #!6 models
> show #!1.1.1 models
> hide #!1.1.1 models
> show #!1.1.3 models
134996 atoms, 134996 residues, atom rlnCoordinateX range -6.47 to 4.05e+03
> artiax colormap #1.2.1.3 rlnCoordinateX palette purplelightblue minValue
> -4.9156 maxValue 4040.377 transparency 0.0
> volume #1.1.3 level 0.09482
134996 atoms, 134996 residues, atom ClosestMitoDistanceNm range 0 to 1.53e+03
> artiax colormap #1.2.1.3 ClosestMitoDistanceNm palette purplelightblue
> minValue 0.0 maxValue 1525.142829 transparency 0.0
> show #!1.2.1 models
> hide #!1.2.1 models
> open
> /Users/redzovicj/Documents/01cryoEM_lit/NGM_bin1_rln_j005_filtsharp_PET_shifted_flip_x_gaussian_5sDev.mrc
Opened NGM_bin1_rln_j005_filtsharp_PET_shifted_flip_x_gaussian_5sDev.mrc as
#2, grid size 168,168,168, pixel 2.68, shown at level 0.487, step 1, values
float32
> artiax attach #2 toParticleList #1.2.1
Opened NGM_bin1_rln_j005_filtsharp_PET_shifted_flip_x_gaussian_5sDev.mrc as
#1.2.1.1.1, grid size 168,168,168, pixel 2.68, shown at level 0.487, step 1,
values float32
> volume #1.2.1.1.1 capFaces false
> artiax show #1.2.1 surfaces
> show #!1.2.1 models
> hide #!1.2.1 models
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> artiax start
Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
OpenGL version: 4.1 INTEL-20.6.4
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2,3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 2020.41.1.0.0 (iBridge: 21.16.1069.0.0,0)
OS Loader Version: 577.140.2~15
Software:
System Software Overview:
System Version: macOS 13.6.1 (22G313)
Kernel Version: Darwin 22.6.0
Time since boot: 13 hours, 25 minutes
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL E197FP:
Resolution: 1280 x 1024 (SXGA - Super eXtended Graphics Array)
UI Looks like: 1280 x 1024 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: HM0706CG1C6S
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: DVI or HDMI
Adapter Firmware Version: 55,62
Installed Packages:
alabaster: 0.7.16
annotated-types: 0.7.0
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
geomdl: 5.3.1
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
pandas: 2.2.2
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pyarrow: 16.1.0
pycollada: 0.7.2
pydantic: 2.7.2
pydantic-core: 2.18.3
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
starfile: 0.5.8
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 14 months ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 14 months ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics |
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Apple Intel graphics driver crash.