Blast results tool_window is None

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open "C:\Users\Muhammad Asim\Downloads\BA.1_S_Glycoprotein_2.cxs" format
> session

Log from Tue Sep 17 15:03:09 2024UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open "C:\Users\Muhammad Asim\Downloads\BA.1_S_Glycoprotein.cxs" format
> session

Log from Tue Sep 17 13:13:10 2024UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> set bgColor #ffffff00

Log from Wed Aug 28 18:14:34 2024 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:/Users/Muhammad Asim/Downloads/6vsb.pdb"

6vsb.pdb title:  
Prefusion 2019-ncov spike glycoprotein with A single receptor-binding domain
up [more info...]  
  
Chain information for 6vsb.pdb #1  
---  
Chain | Description | UniProt  
A B C | spike glycoprotein | SPIKE_SARS2 1-1208  
  
Non-standard residues in 6vsb.pdb #1  
---  
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)  
  

> set bgColor white

> select ::name="NAG"

854 atoms, 871 bonds, 61 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> preset "molecular surfaces" "chain id coloring (opaque)"

Using preset: Molecular Surfaces / Chain ID Coloring (Opaque)  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color bychain targ s trans 0

  

> color #2274a5ff

> select /A-C: 14-685

12028 atoms, 12334 bonds, 30 pseudobonds, 1606 residues, 2 models selected  

> select /A-C: 686-1273

9972 atoms, 10169 bonds, 6 pseudobonds, 1299 residues, 2 models selected  

> color (#!1 & sel) #ff9f1cff

> select /A-C: 319-541

4133 atoms, 4244 bonds, 12 pseudobonds, 566 residues, 2 models selected  

> color (#!1 & sel) #f24333ff

> preset "molecular surfaces" "ghostly white"

Using preset: Molecular Surfaces / Ghostly White  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color white targ s trans 80

  

> lighting full

> lighting shadows false

> lighting shadows true

> graphics silhouettes true

> hide pbonds

> set shilhouetteswidth 1.3

Expected a keyword  

> set shilhouettewidth 1.3

Expected a keyword  

> set shilhouettewidth: 1.3

Expected a keyword  

> help shilhouette

No help found for 'shilhouette'  

> set silhouetteswidth 1.3

Expected a keyword  

> set silhouetteWidth 1.3

> set silhouetteDepthJump 0.02

> select clear

> view

> view orient

> save E:/Research/S_Open_Side_View.jpg width 16917 height 10000 supersample 4

> save E:/Research/S_Protein_Open_SARS-CoV-2.cxs

——— End of log from Wed Aug 28 18:14:34 2024 ———

opened ChimeraX session  

> close session

> open "C:/Users/Muhammad Asim/Downloads/8itu.pdb"

8itu.pdb title:  
Sars-cov-2 ο Ba.1 spike glycoprotein In complex with rabbit monoclonal
antibody 1H1 igg. [more info...]  
  
Chain information for 8itu.pdb #1  
---  
Chain | Description | UniProt  
A B C | spike glycoprotein | SPIKE_SARS2 1-1208  
D F H | 1H1 light chain |   
E G I | 1H1 heavy chain |   
  
Non-standard residues in 8itu.pdb #1  
---  
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)  
  

> preset "molecular surfaces" "ghostly white"

Using preset: Molecular Surfaces / Ghostly White  
Changed 29528 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color white targ s trans 80

  

> select /E/G/I

2706 atoms, 2778 bonds, 366 residues, 1 model selected  

> delete atoms (#!1 & sel)

> delete bonds (#!1 & sel)

> select /D/F/H

2472 atoms, 2529 bonds, 333 residues, 1 model selected  

> select /D/F/H

2472 atoms, 2529 bonds, 333 residues, 1 model selected  

> delete atoms (#!1 & sel)

> delete bonds (#!1 & sel)

> select ::name="NAG"

616 atoms, 631 bonds, 44 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select /A/B/C

24350 atoms, 24968 bonds, 24 pseudobonds, 3104 residues, 2 models selected  

> color (#!1 & sel) #2274a5ff

> undo

> show sel cartoons

> hide sel atoms

> color (#!1 & sel) #f24333ff

> color (#!1 & sel) #2274a5ff

> hide pbonds

> preset "molecular surfaces" "ghostly white"

Using preset: Molecular Surfaces / Ghostly White  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color white targ s trans 80

  

> save "C:/Users/Muhammad Asim/Downloads/BA.1_S_Glycoprotein.cxs"

——— End of log from Tue Sep 17 13:13:10 2024 ———

opened ChimeraX session  

> select clear

> select /A,B,C: 681

Nothing selected  

> select /A-C: 681

Nothing selected  

> select /A-C: 488

18 atoms, 15 bonds, 3 residues, 1 model selected  

> select /A-C: 96, 346, 455, 458

111 atoms, 99 bonds, 12 residues, 1 model selected  

> select /A-C: 96, 346, 455, 458, 484, 681, 688

126 atoms, 111 bonds, 15 residues, 1 model selected  

> color (#!1 & sel) #ff9f1cff

> color (#!1 & sel) #f24333ff

> select /A-C: 96

27 atoms, 24 bonds, 3 residues, 1 model selected  

> ui tool show Rotamers

> swapaa interactive sel ASP rotLib Dunbrack

/A GLU 96: phi -154.5, psi 162.3 trans  
Changed 90 bond radii  

> swapaa #!1/A:96 ASP criteria 1 rotLib Dunbrack

Using Dunbrack library  
8itu.pdb #!1/A GLU 96: phi -154.5, psi 162.3 trans  
Applying ASP rotamer (chi angles: -159.8 -1.2) to 8itu.pdb #!1/A ASP 96  

> select /A-C: 346

33 atoms, 30 bonds, 3 residues, 1 model selected  

> swapaa interactive sel THR rotLib Dunbrack

/A ARG 346: phi -125.7, psi 134.4 trans  
Changed 12 bond radii  

> swapaa #!1/A:346 THR criteria 1 rotLib Dunbrack

Using Dunbrack library  
8itu.pdb #!1/A ARG 346: phi -125.7, psi 134.4 trans  
Applying THR rotamer (chi angles: -59.6) to 8itu.pdb #!1/A THR 346  

> select /A-C: 455

24 atoms, 21 bonds, 3 residues, 1 model selected  

> swapaa interactive sel TRP rotLib Dunbrack

/A LEU 455: phi -108.6, psi -32.1 trans  
Changed 468 bond radii  

> swapaa #!1/A:455 TRP criteria 1 rotLib Dunbrack

Using Dunbrack library  
8itu.pdb #!1/A LEU 455: phi -108.6, psi -32.1 trans  
Applying TRP rotamer (chi angles: -67.0 104.5) to 8itu.pdb #!1/A TRP 455  

> select /A-C: 458

27 atoms, 24 bonds, 3 residues, 1 model selected  

> swapaa interactive sel MET rotLib Dunbrack

/A LYS 458: phi -63.6, psi -42.3 trans  
Changed 135 bond radii  

> swapaa #!1/A:458 MET criteria 1 rotLib Dunbrack

Using Dunbrack library  
8itu.pdb #!1/A LYS 458: phi -63.6, psi -42.3 trans  
Applying MET rotamer (chi angles: -69.1 174.7 69.8) to 8itu.pdb #!1/A MET 458  

> select /A-C: 484

15 atoms, 12 bonds, 3 residues, 1 model selected  

> color (#!1 & sel) #ff9f1cff

> color (#!1 & sel) #f24333ff

> swapaa interactive sel VAL rotLib Dunbrack

/A ALA 484: phi -109.0, psi 39.2 trans  
Changed 12 bond radii  

> swapaa #!1/A:484 VAL criteria 1 rotLib Dunbrack

Using Dunbrack library  
8itu.pdb #!1/A ALA 484: phi -109.0, psi 39.2 trans  
Applying VAL rotamer (chi angles: -64.9) to 8itu.pdb #!1/A VAL 484  

> select /A-C: 681

Nothing selected  

> select /A: 681

Nothing selected  

> select /C: 681

Nothing selected  

> select: 681

Unknown command: select: 681  

> select /A: 681

Nothing selected  

> select /A,B,C: 681

Nothing selected  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> sequence chain /B /C

Alignment identifier is 1  

> select clear

[Repeated 10 time(s)]

> select /A,B,C: 900

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select clear

[Repeated 1 time(s)]

> save "C:/Users/Muhammad Asim/Downloads/BA.1_S_Glycoprotein.cxs"

> close session

> open "C:/Users/Muhammad Asim/Downloads/8hca.pdb"

8hca.pdb title:  
Sars-cov-2 ο Ba.1 spike trimer (6P) In complex with 3 YB13-292 fabs (1 RBD up)
[more info...]  
  
Chain information for 8hca.pdb #1  
---  
Chain | Description | UniProt  
A B C | spike glycoprotein | SPIKE_SARS2 14-1211  
D F H | heavy chain of YB13-292 fab |   
E G L | light chain of YB13-292 fab |   
  
Non-standard residues in 8hca.pdb #1  
---  
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)  
  

> select /D/F/H

5181 atoms, 5304 bonds, 696 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select /E/G/L

4947 atoms, 5064 bonds, 657 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select ::name="NAG"

756 atoms, 768 bonds, 54 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select /A-C: 681

Nothing selected  

> close session

> open "C:/Users/Muhammad Asim/Downloads/7xo8.pdb"

7xo8.pdb title:  
Sars-cov-2 ο Ba.2 variant spike trimer with three human ACE2 bound [more
info...]  
  
Chain information for 7xo8.pdb #1  
---  
Chain | Description | UniProt  
A B C | spike glycoprotein | SPIKE_SARS2 4-1273  
D E F | angiotensin-converting enzyme 2 | ACE2_HUMAN 1-805  
  
Non-standard residues in 7xo8.pdb #1  
---  
CL — chloride ion  
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)  
ZN — zinc ion  
  

> select /A-C: 681

Nothing selected  

> select /A-C: 681

Nothing selected  

> select /D/E/F

14661 atoms, 15072 bonds, 6 pseudobonds, 1797 residues, 2 models selected  

> delete atoms (#!1 & sel)

> delete bonds (#!1 & sel)

> select ::name="NAG"

462 atoms, 462 bonds, 33 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> preset "molecular surfaces" "ghostly white"

Using preset: Molecular Surfaces / Ghostly White  
Changed 24003 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color white targ s trans 80

  

> show cartoons

> hide atoms

> color #2274a5ff

> show cartoons

> hide atoms

> preset "molecular surfaces" "ghostly white"

Using preset: Molecular Surfaces / Ghostly White  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color white targ s trans 80

  

> save "C:/Users/Muhammad Asim/Downloads/BA.1_S_Glycoprotein_2.cxs"

——— End of log from Tue Sep 17 15:03:09 2024 ———

opened ChimeraX session  

> ui tool show "Model Loops"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\blastprotein\ui\results.py", line 463, in
_on_report_hits_signal  
self.tool_window.manage("side")  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py",
line 2202, in manage  
tool_name = self.tool_instance.tool_name  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'tool_name'  
  
AttributeError: 'NoneType' object has no attribute 'tool_name'  
  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py",
line 2202, in manage  
tool_name = self.tool_instance.tool_name  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\blastprotein\ui\results.py", line 463, in
_on_report_hits_signal  
self.tool_window.manage("side")  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py",
line 2202, in manage  
tool_name = self.tool_instance.tool_name  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'tool_name'  
  
AttributeError: 'NoneType' object has no attribute 'tool_name'  
  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py",
line 2202, in manage  
tool_name = self.tool_instance.tool_name  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 561.09
OpenGL renderer: NVIDIA GeForce GTX 1050 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: windows

Manufacturer: Dell Inc.
Model: Precision Tower 5810
OS: Microsoft Windows 11 Pro (Build 22631)
Memory: 17,098,457,088
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Xeon(R) CPU E5-1620 v3 @ 3.50GHz
OSLanguage: en-GB

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2024.6.2
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.1
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 24.1
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pywin32: 306
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
    WMI: 1.5.1

[Eric Pettersen]

Don't see how...