![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
May 16, 2022:
- 8:19 PM Ticket #6876 (Nogui save crash with labels / ensure exported graphics is up to date) closed by
- fixed: Fixed. I made the text_image_rgba() return a blank image when in …
- 7:17 PM Ticket #6881 (Map statistics wrong(?)) created by
- […]
- 6:12 PM Ticket #6880 (Crash deleting a water) closed by
- fixed: Was douse tool creating an Atoms collection instead of a Residues …
- 5:51 PM Ticket #6880 (Crash deleting a water) created by
- […]
- 4:14 PM Ticket #6879 (Unlabeled distances) created by
- Like Chimera, allow a distance to be unlabeled.
- 4:12 PM Ticket #6878 (command to create generic pseudobond) created by
- So that people don't have to use fake unlabeled distances. Would need …
- 3:50 PM Ticket #6877 (support pdbx_struct_mod_residue in mmCIF files) created by
- Originally, the equivalent of the PDB file's MODRES record was the …
- 3:46 PM Ticket #6872 (PAE chart: 'NoneType' object has no attribute 'residues') closed by
- fixed: Fixed. PAE plot opened without associated structure gave errors when …
- 3:36 PM Ticket #6871 (glDrawBuffer: invalid operation) closed by
- can't reproduce: ChimeraX raised an OpenGL graphics error. It could be a graphics …
- 3:29 PM Ticket #6876 (Nogui save crash with labels / ensure exported graphics is up to date) created by
- […] cmds.cxc
- 3:20 PM Ticket #6869 (Crash in event loop, possibly while saving image) closed by
- can't reproduce: Could be the common open/save dialog crash.
- 3:17 PM Ticket #6868 (glClear access violation) closed by
- can't reproduce: This crash looks like some multi-thread problem either caused by …
- 2:51 PM Ticket #6862 (Crash in event loop recording movie) closed by
- can't reproduce: Possible graphics driver crash.
- 2:49 PM Ticket #6859 (Attempt to retrieve context when no valid context) closed by
- duplicate: Duplicate of #6770.
- 2:48 PM Ticket #6857 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by
- nonchimerax: Apple graphics driver crash.
- 2:47 PM Ticket #6856 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by
- nonchimerax: Apple graphics driver crash.
- 2:45 PM Ticket #6854 (sym: normalize_vector() takes 1 positional argument but 3 were given) closed by
- fixed: Fixed in 1.4. The vector_rotation() routine was wrong in some corner …
- 2:25 PM Ticket #6853 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by
- nonchimerax: Apple graphics driver crash.
- 2:24 PM Ticket #6852 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by
- nonchimerax: Apple graphics driver crash.
- 1:45 PM Ticket #6875 (Make sym command work on maps) created by
- The sym command with specified symmetry group only works on atomic …
- 1:16 PM Ticket #6850 (Hang during "rainbow structures"?) closed by
- duplicate: I don't think ChimeraX hung. I suspect the user was simply trying to …
- 1:14 PM Ticket #6849 (glClear: invalid framebuffer operation) closed by
- can't reproduce: Looks like ChimeraX 1.3 gave these OpenGL errors on startup. Does it …
- 1:08 PM Ticket #6847 (Crash in contour_surface()) closed by
- can't reproduce: Have seen ChimeraX surface calculation crash a few times in Windows …
- 12:43 PM Ticket #6874 (crossfade command stretches image when movie recording with width specified) created by
- Begin forwarded message: From: Omid Haji-Ghassemi via ChimeraX-users …
- 12:27 PM Ticket #6836 (Crash running AlphaFold prediction) closed by
- can't reproduce: Third report in 2 days by same user, running AlphaFold prediction on …
- 12:25 PM Ticket #6835 (Crash running AlphaFold prediction) closed by
- can't reproduce: No clues. Seems likely to be a Qt crash probably connected with the …
- 12:24 PM Ticket #6834 (Crash in event loop after AlphaFold prediction) closed by
- can't reproduce: No clues. Most likely a Qt bug since it does not appear to be in any …
- 12:19 PM Ticket #6827 (RFE: Warn user about Wayland on startup) closed by
- duplicate
- 11:11 AM Ticket #6820 (Crash in Qt event loop running multiple AlphaFold predictions) closed by
- can't reproduce
- 11:04 AM Ticket #6873 (Crash creating AtomSearchTree) closed by
- duplicate
- 10:48 AM Ticket #6867 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:44 AM Ticket #6866 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:41 AM Ticket #6796 (glClear: invalid operation) closed by
- can't reproduce: Appears a PDB file was clicked in the file history and an OpenGL error …
- 10:34 AM Ticket #6795 (Graphics hardware encountered an error and was reset) closed by
- nonchimerax: Apple graphics driver crash. Unfortunately Apple's drivers on Intel …
- 10:31 AM Ticket #6863 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:27 AM Ticket #6861 (Color Key: wrapped C/C++ object of type QDockWidget has been deleted) closed by
- can't reproduce
- 10:25 AM Ticket #6860 (Attempt to retrieve context when no valid context) closed by
- duplicate
- 10:19 AM Ticket #6858 (Crash using File→Open on Windows) closed by
- can't reproduce: 1.3
- 9:26 AM Ticket #6855 (Crash in event loop) closed by
- can't reproduce
- 9:18 AM Ticket #6851 (Crash during/after Rotamers) closed by
- can't reproduce
- 9:05 AM Ticket #6848 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:38 AM Ticket #6873 (Crash creating AtomSearchTree) created by
- […]
- 7:45 AM Ticket #6872 (PAE chart: 'NoneType' object has no attribute 'residues') created by
- […]
- 6:06 AM Ticket #6871 (glDrawBuffer: invalid operation) created by
- […]
- 4:02 AM Ticket #6870 (Premature tool-added trigger) created by
- […]
- 3:17 AM Ticket #6869 (Crash in event loop, possibly while saving image) created by
- […]
- 2:34 AM Ticket #6868 (glClear access violation) created by
- […]
May 15, 2022:
- 9:39 PM Ticket #6867 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 9:39 PM Ticket #6866 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:02 PM Ticket #6864 (ISOLDE: validate_scale_and_color_rotamers: unordered_map::at: key not found) created by
- […]
- 2:59 PM Ticket #6863 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:36 PM Ticket #6862 (Crash in event loop recording movie) created by
- […]
May 14, 2022:
- 11:13 AM Ticket #6861 (Color Key: wrapped C/C++ object of type QDockWidget has been deleted) created by
- […]
- 8:20 AM Ticket #6860 (Attempt to retrieve context when no valid context) created by
- […]
- 8:18 AM Ticket #6859 (Attempt to retrieve context when no valid context) created by
- […]
May 13, 2022:
- 6:23 PM Ticket #5807 (Session save crashes when it registers all aliased commands) closed by
- fixed: Limit search for user aliases to completely registered commands (ie., …
- 4:53 PM Ticket #6858 (Crash using File→Open on Windows) created by
- […]
- 4:06 PM Ticket #6857 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by
- […]
- 3:06 PM Ticket #6856 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by
- […]
- 1:36 PM Ticket #6855 (Crash in event loop) created by
- […]
- 11:20 AM Ticket #6854 (sym: normalize_vector() takes 1 positional argument but 3 were given) created by
- […]
- 9:41 AM Ticket #6853 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by
- […]
- 9:38 AM Ticket #6852 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by
- […]
- 6:44 AM Ticket #6851 (Crash during/after Rotamers) created by
- […]
- 3:31 AM Ticket #6850 (Hang during "rainbow structures"?) created by
- […]
- 3:14 AM Ticket #6849 (glClear: invalid framebuffer operation) created by
- […]
- 3:03 AM Ticket #6848 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:48 AM Ticket #6847 (Crash in contour_surface()) created by
- […]
May 12, 2022:
- 11:58 PM Ticket #6770 (Gnome: OpenGL.error.Error: Attempt to retrieve context when no valid ...) closed by
- fixed: Put setting QT_QPA_PLATFORM to xcb, when the XDG_SESSION_TYPE is …
- 5:07 PM Ticket #6846 (Crash removing dock widget) closed by
- can't reproduce: Was only using 3.5GB
- 4:25 PM Ticket #6842 (Crash removing dock widget) closed by
- can't reproduce: Was using 40GB at the time.
- 3:42 PM Ticket #6841 (write_gltf: No such file or directory) closed by
- can't reproduce
- 2:28 PM Ticket #6839 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 2:27 PM Ticket #6846 (Crash removing dock widget) created by
- […]
- 2:25 PM Ticket #6838 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 2:04 PM NTTData edited by
- (diff)
- 2:02 PM NTTData edited by
- (diff)
- 2:00 PM Ticket #6845 (Adjust VR controller button layout for different controllers) created by
- To paraphrase Phil: we like that the mapping of buttons to the cones …
- 1:28 PM NTTData edited by
- (diff)
- 11:35 AM Ticket #6844 (Flip peptide bond: wrapped C/C++ object of type QTableWidget has been ...) created by
- […]
- 11:15 AM Ticket #6723 (Drop support for CentOS 7, Ubuntu 16 and 18) closed by
- fixed: Limited release candidate builds to Qt supported versions.
- 11:09 AM Ticket #6843 (Toolbar button causes brief spurious window appearance) created by
- […] 2022-05-12 19-05-21.mkv
- 10:25 AM Ticket #6833 (Crash in event loop) closed by
- can't reproduce
- 10:22 AM Ticket #6832 (Crash in Ring.aromatic) closed by
- duplicate
- 10:21 AM Ticket #6842 (Crash removing dock widget) created by
- […]
- 10:20 AM Ticket #6831 (Crash during drag and drop: backingScaleFactor > 0.f) closed by
- can't reproduce: Qt5
- 8:17 AM Ticket #6841 (write_gltf: No such file or directory) created by
- […]
- 6:18 AM Ticket #6840 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 5:20 AM Ticket #6839 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 5:17 AM Ticket #6838 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 3:51 AM Ticket #6837 (Have undocked tools forward keystrokes to command line) created by
- […]
- 3:49 AM Ticket #6836 (Crash running AlphaFold prediction) created by
- […]
- 3:48 AM Ticket #6835 (Crash running AlphaFold prediction) created by
- […]
May 11, 2022:
- 10:46 PM Ticket #6834 (Crash in event loop after AlphaFold prediction) created by
- […]
- 10:00 PM Ticket #6833 (Crash in event loop) created by
- […]
- 3:23 PM Ticket #6832 (Crash in Ring.aromatic) created by
- […]
- 2:31 PM Ticket #6831 (Crash during drag and drop: backingScaleFactor > 0.f) created by
- […]
- 11:14 AM Ticket #6830 (Crash creating QWebEngineProfile at startup) closed by
- duplicate
- 11:12 AM Ticket #6829 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 12:29 AM Ticket #6830 (Crash creating QWebEngineProfile at startup) created by
- […]
May 10, 2022:
- 11:52 PM Ticket #6829 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 9:58 PM Ticket #6828 ('DefaultApi' object has no attribute 'newer_versions') created by
- […]
- 6:37 PM Ticket #6818 (Fetch mmCIF template: URL can't contain control characters) closed by
- can't reproduce: It looks like the user downloaded the mmcif file outside of ChimeraX …
- 3:02 PM Ticket #6827 (RFE: Warn user about Wayland on startup) created by
- A handful of anonymous users have reported something along the lines …
- 3:00 PM Ticket #6826 (No valid OpenGL context on Linux Wayland) closed by
- duplicate: Duplicate of #6824
- 3:00 PM Ticket #6825 (No valid OpenGL context on Linux Wayland) closed by
- duplicate: Duplicate of #6824
- 12:34 PM Ticket #6826 (No valid OpenGL context on Linux Wayland) created by
- […]
- 12:33 PM Ticket #6825 (No valid OpenGL context on Linux Wayland) created by
- […]
- 12:33 PM Ticket #6824 (No valid OpenGL context on Linux) created by
- […]
- 11:55 AM Ticket #6823 (RFE: crosslinks histogram - save plot, control drawing parameters) created by
- On May 10, 2022, at 2:06 AM, Pim Huis in 't Veld via ChimeraX-users …
- 11:24 AM Ticket #6822 (Contacts/Clashes improvements) created by
- Now I'm thinking: - don't want to make default treatment "select" …
- 11:04 AM Ticket #6821 (Allow 'info' command to write directly to a file) created by
- Since the log does not exist in nogui mode, having only the option of …
- 10:34 AM Ticket #6816 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:33 AM Ticket #6815 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:31 AM Ticket #6814 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:25 AM Ticket #6813 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:03 AM Ticket #6820 (Crash in Qt event loop running multiple AlphaFold predictions) created by
- […]
- 9:30 AM Ticket #6819 (invalid literal error in blast results) closed by
- duplicate: Duplicate of #5572.
- 4:37 AM Ticket #6819 (invalid literal error in blast results) created by
- […]
- 4:28 AM Ticket #6818 (Fetch mmCIF template: URL can't contain control characters) created by
- […]
- 2:59 AM Ticket #6817 (Problem importing SIM-XL results) created by
- […] ResultsSIMXL.mzid
- 2:26 AM Ticket #6816 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:02 AM Ticket #6815 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:26 AM Ticket #6814 (Crash using File→Open on Windows and/or in return statement) created by
- […]
May 9, 2022:
- 4:54 PM Ticket #6813 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:36 PM ChangeLog edited by
- (diff)
- 12:31 PM ChangeLog edited by
- (diff)
- 12:30 PM ChangeLog edited by
- (diff)
- 10:35 AM Ticket #6811 (Malloc-related crash in ...) closed by
- can't reproduce
- 10:30 AM Ticket #6810 (Crash in event loop) closed by
- can't reproduce
- 10:30 AM Ticket #6809 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:28 AM Ticket #6808 (Crash reading PDB file) closed by
- can't reproduce: Good chance already fixed
- 10:26 AM Ticket #6807 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:24 AM Ticket #6806 (hide dust shortcut: local variable 'maps' referenced before assignment) closed by
- duplicate
- 10:15 AM Ticket #6805 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:05 AM Ticket #6801 (Restore session: _pickle.UnpicklingError: invalid load key) closed by
- duplicate
- 9:26 AM Ticket #6800 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.4, but pre-3.9.11
- 9:22 AM Ticket #6798 (Crash at startup showing Rapid Access) closed by
- can't reproduce
- 7:44 AM Ticket #6812 (get-version check failed: Name or service not known) created by
- […]
- 4:52 AM Ticket #6811 (Malloc-related crash in ...) created by
- […]
- 3:33 AM Ticket #6810 (Crash in event loop) created by
- […]
May 8, 2022:
- 10:59 PM Ticket #6809 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:38 PM Ticket #6808 (Crash reading PDB file) created by
- […]
- 2:19 AM Ticket #6807 (Crash using File→Open on Windows and/or in return statement) created by
- […]
May 7, 2022:
- 7:22 PM Ticket #6806 (hide dust shortcut: local variable 'maps' referenced before assignment) created by
- […]
- 2:30 PM Ticket #6805 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:25 PM Ticket #6804 (Session restore: invalid load key, '\x04') created by
- […]
- 8:28 AM Ticket #6803 (Crash creating QWebEngineProfile) created by
- […]
- 5:10 AM Ticket #6802 (XMAS: KeyError: 'Score') created by
- […]
- 1:46 AM Ticket #6801 (Restore session: _pickle.UnpicklingError: invalid load key) created by
- […]
May 6, 2022:
- 11:16 PM Ticket #6800 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:42 PM Ticket #6799 (RFE: Set scale factors from displayed contours) created by
- From: Oliver Clarke via Chimera-users <chimera-users@…> …
- 12:00 PM Ticket #6798 (Crash at startup showing Rapid Access) created by
- […]
- 11:00 AM Ticket #6797 (XMAS: parse_sequence_dbs: list index out of range) created by
- […]
- 10:24 AM Ticket #6794 (Crash in event loop at startup) closed by
- can't reproduce
- 10:24 AM Ticket #6793 (Crash showing/using Quick Start guide) closed by
- can't reproduce
- 10:21 AM Ticket #6792 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3rc
- 10:19 AM Ticket #6791 (Crash opening PDB file) closed by
- can't reproduce: Likely fixed
- 10:17 AM Ticket #6790 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:00 AM Ticket #6796 (glClear: invalid operation) created by
- […]
- 6:59 AM Ticket #6795 (Graphics hardware encountered an error and was reset) created by
- […]
- 4:20 AM Ticket #6794 (Crash in event loop at startup) created by
- […]
- 3:49 AM Ticket #6793 (Crash showing/using Quick Start guide) created by
- […]
- 2:38 AM Ticket #6792 (Crash using File→Open on Windows and/or in return statement) created by
- […]
May 5, 2022:
- 7:54 PM Ticket #6791 (Crash opening PDB file) created by
- […]
- 7:11 PM Ticket #6790 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:53 PM Ticket #6789 (Needed Fedora libraries) created by
- […] chimerax-daily_fedora36_fix
- 3:34 PM Ticket #6785 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by
- nonchimerax: Apple graphics driver crash.
- 3:26 PM Ticket #6784 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 3:21 PM Ticket #6782 (ISOLDE as multiple tools) closed by
- fixed: As discussed in the programmer's meeting, there is no problem for a …
- 3:19 PM Ticket #6781 (Crash in event loop) closed by
- can't reproduce: Crash happened long after several QWindowsWindow::setGeometry: Unable …
- 3:14 PM Ticket #6780 (Calling windowShouldClose: on the delegate for the QNSPanel) closed by
- can't reproduce
- 3:12 PM Ticket #6779 (MemoryError running coulombic) closed by
- limitation: Hi, Your machine ran out of memory while trying to compute the …
- 2:56 PM Ticket #6775 (Qt6: QOpenGLFramebufferObject: Framebuffer incomplete attachment) closed by
- duplicate
- 2:52 PM Ticket #6777 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 2:40 PM Dev2022-5-5 edited by
- (diff)
- 2:26 PM Ticket #6788 (Remove Windows crash reporting in ChimeraX 1.4) created by
- We have not found Windows crash reports useful enough to justify the …
- 1:53 PM Ticket #6523 (Matplotlib bug) closed by
- wontfix: ChimeraX >= 1.4 will use PyQt6.
- 1:52 PM Ticket #6787 (CentOS 7 version for bundle building) created by
- […]
- 1:47 PM Ticket #6334 (Say Windows 11 supported on Download page) closed by
- fixed: Added tested on Windows 11 to the production text.
- 1:05 PM 2022-5-5 edited by
- (diff)
- 12:43 PM Ticket #6786 (SBGrid ChimeraX 1.3 fails to start on Ubuntu 20.04) created by
- The SBGrid ChimeraX 1.3 does not start on Ubuntu 20.04 failing to find …
- 10:55 AM Features edited by
- (diff)
- 10:28 AM Dev2022-5-5 edited by
- (diff)
- 10:11 AM Ticket #6785 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by
- […]
- 7:58 AM Ticket #6784 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 7:09 AM Ticket #6783 (ISOLDE not listing clashes) created by
- […]
- 6:08 AM Ticket #6782 (ISOLDE as multiple tools) created by
- […]
- 5:35 AM Ticket #6781 (Crash in event loop) created by
- […]
- 5:06 AM Ticket #6780 (Calling windowShouldClose: on the delegate for the QNSPanel) created by
- […]
- 12:28 AM Ticket #6779 (MemoryError running coulombic) created by
- […]
May 4, 2022:
- 6:10 PM Ticket #6778 (Integrate arm64 macOS into ChimeraX's build/deployment system) created by
- Need to investigate whether we're going to make a universal …
- 4:48 PM phenix-5-4-22 created by
- 4:41 PM Features edited by
- (diff)
- 1:57 PM Ticket #6777 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 12:37 PM Ticket #6776 (Tolman cone angle not implemented for tridentate or more ligands) created by
- […]
- 12:33 PM Ticket #6775 (Qt6: QOpenGLFramebufferObject: Framebuffer incomplete attachment) created by
- […]
- 12:22 PM Ticket #6724 (Color PAE plots using domain colors) closed by
- fixed: Done. Added AlphaFold PAE plot context menu entries "Color plot from …
- 12:11 PM Ticket #6774 (Unknown crash) created by
- […]
- 11:37 AM Ticket #6746 (Mac M1 loading netcdf trajectory fails) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/f6d8634dd0be462e28f8c7db117fe4 …
- 11:36 AM Ticket #6745 (Mac M1 pytables broken: libsnappy.1.dylib not loaded) closed by
- fixed: Sure, never meant to interrupt your flow. …
- 10:28 AM Ticket #6773 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:26 AM Ticket #6772 (QWindowsWindow::setGeometry: Unable to set geometry) closed by
- can't reproduce
- 10:25 AM Ticket #6771 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') closed by
- can't reproduce: There are several sequence errors before the crash as well (which I …
- 10:13 AM Ticket #6768 (Qt6: QOpenGLFramebufferObject: Framebuffer incomplete attachment) closed by
- can't reproduce
- 6:40 AM Ticket #6773 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:57 AM Ticket #6772 (QWindowsWindow::setGeometry: Unable to set geometry) created by
- […]
- 5:20 AM Ticket #6771 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') created by
- […]
- 12:37 AM Ticket #6749 (MemoryError saving session) closed by
- can't reproduce: The memory error saving a session does not appear to have caused the …
May 3, 2022:
- 7:58 PM Ticket #6725 (Make PAE plot drag select the corresponding residues) closed by
- fixed: Done. If you right click or ctrl-click on the plot it now shows a …
- 7:11 PM Ticket #6770 (Gnome: OpenGL.error.Error: Attempt to retrieve context when no valid ...) created by
- […] error_opening_chimeraxdaily
- 6:55 PM Ticket #6620 (Show residue names at mouse position on AlphaFold PAE plot) closed by
- fixed: Done. Residues and PAE value are shown at the bottom to the right of …
- 5:43 PM Ticket #6769 (Make PAE plot guess correct file for full alphafold runs) closed by
- fixed: Done.
- 5:42 PM Ticket #6769 (Make PAE plot guess correct file for full alphafold runs) created by
- Full AlphaFold 2.2.0 runs (for example on Wynton or Minsky) produce …
- 4:31 PM Ticket #6767 (Crash Qt event loop while running AlphaFold prediction) closed by
- can't reproduce: Probable QWebEngine crash.
- 3:22 PM Ticket #6768 (Qt6: QOpenGLFramebufferObject: Framebuffer incomplete attachment) created by
- […]
- 1:34 PM Training edited by
- (diff)
- 1:13 PM Ticket #6767 (Crash Qt event loop while running AlphaFold prediction) created by
- […]
- 11:15 AM 2022-5-5 created by
- 11:13 AM Dev2022-5-5 created by
- 11:12 AM DeveloperMeetings edited by
- (diff)
- 11:09 AM Ticket #6763 (Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple graphics driver crash.
- 9:54 AM Ticket #6766 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:53 AM Ticket #6765 (Crash making weak-key dictionary based on bonds) closed by
- can't reproduce
- 9:47 AM Ticket #6764 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3rc
- 5:02 AM Ticket #6766 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:16 AM Ticket #6765 (Crash making weak-key dictionary based on bonds) created by
- […]
- 12:58 AM Ticket #6764 (Crash using File→Open on Windows and/or in return statement) created by
- […]
May 2, 2022:
- 9:32 PM Ticket #6763 (Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics 645) created by
- […]
- 5:51 PM Ticket #6696 (Simplify labeling contacting residues) closed by
- fixed: Added no-chain variants for the Name and 1-Letter Code combo entries …
- 3:38 PM Ticket #6762 (matchmaker showAlignment tries to calculate CA RMSD header for nucleic ...) created by
- From: "Rundlet, Emily via ChimeraX-users" …
- 1:00 PM Ticket #6363 (Qt6 shell tab-completion crash) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/7442bd2119e828d8a91b5591c0e43a …
- 11:39 AM Ticket #6761 (Crash hiding cartoons) closed by
- can't reproduce: Maybe graphics driver crash. Python traceback shows it is Qt event loop.
- 11:34 AM Ticket #6760 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 11:33 AM Ticket #6759 (Crash in event loop) closed by
- can't reproduce
- 11:32 AM Ticket #6758 (Crash in event loop) closed by
- can't reproduce: Probably related to use of XMAS
- 11:29 AM Ticket #6754 (Crash in Qt event loop while running AlphaFold prediction) closed by
- can't reproduce
- 11:16 AM Ticket #6752 (xcb_shm_create_segment() failed opening map) closed by
- nonchimerax: The crash report says xcb_shm_create_segment() failed for size …
- 11:13 AM Ticket #6755 (Unknown crash) closed by
- can't reproduce
- 11:02 AM Ticket #6753 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:56 AM Ticket #6750 (Crash in numpy) closed by
- can't reproduce: Online info says: "The exception code 0xc0000374 indicates a heap …
- 10:54 AM Ticket #6751 (Crash using File→Open on Windows) closed by
- can't reproduce: 1.3
- 10:54 AM Ticket #6748 (Graphics hardware encountered an error and was reset) closed by
- nonchimerax: Crashed in Apple graphics driver. Only Apple can fix this. More …
- 10:41 AM Ticket #6747 (Crash in QOpenGLFunctions::initializeOpenGLFunctions) closed by
- can't reproduce: version 1.1.1
- 10:35 AM Ticket #6744 (Crash processing events or recording movie) closed by
- duplicate: Apparently reproducible for somebody!
- 10:28 AM Ticket #6743 (Crash processing events or recording movie) closed by
- can't reproduce: Chimera's log and the Python stack trace don't really seem to be in …
- 9:55 AM Ticket #6742 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:53 AM Ticket #6741 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:25 AM Ticket #6761 (Crash hiding cartoons) created by
- […]
- 9:24 AM Ticket #6739 (Connection problem querying for new versions) closed by
- duplicate
- 9:21 AM Ticket #6738 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:33 AM Ticket #6760 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 7:57 AM Ticket #6759 (Crash in event loop) created by
- […]
- 6:31 AM Ticket #6758 (Crash in event loop) created by
- […]
- 5:35 AM Ticket #6757 (PermissionError writing .csv file leaves pseudobonds in bad state) created by
- […]
- 4:58 AM Ticket #6756 (parse_xi_pos_ids: 'float' object is not iterable) created by
- […]
May 1, 2022:
- 11:55 PM Ticket #6755 (Unknown crash) created by
- […]
- 8:38 PM Ticket #6754 (Crash in Qt event loop while running AlphaFold prediction) created by
- […]
- 4:31 AM Ticket #6753 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:08 AM Ticket #6752 (xcb_shm_create_segment() failed opening map) created by
- […]
Apr 30, 2022:
- 10:34 PM Ticket #6751 (Crash using File→Open on Windows) created by
- […]
- 2:20 AM Ticket #6750 (Crash in numpy) created by
- […]
Apr 29, 2022:
- 6:12 PM Ticket #6749 (MemoryError saving session) created by
- […]
- 4:29 PM Ticket #6748 (Graphics hardware encountered an error and was reset) created by
- […]
- 2:22 PM Ticket #6747 (Crash in QOpenGLFunctions::initializeOpenGLFunctions) created by
- […]
- 11:12 AM Ticket #6746 (Mac M1 loading netcdf trajectory fails) created by
- […]
- 11:07 AM Ticket #6745 (Mac M1 pytables broken: libsnappy.1.dylib not loaded) created by
- […]
- 11:05 AM Ticket #6744 (Crash processing events or recording movie) created by
- […]
- 11:05 AM Ticket #6743 (Crash processing events or recording movie) created by
- […]
- 10:43 AM Ticket #3761 (Warning when quitting about WebEnginePage profile released too soon) reopened by
- Let's reopen for now, I'll do some digging.
- 5:07 AM Ticket #6742 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:57 AM Ticket #6741 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:28 AM Ticket #6740 (MemoryError saving session) created by
- […]
Apr 28, 2022:
- 7:17 PM Ticket #6739 (Connection problem querying for new versions) created by
- […]
- 6:52 PM Dev2022-4-28 created by
- 6:45 PM DeveloperMeetings edited by
- (diff)
- 6:44 PM 2022-4-28 edited by
- (diff)
- 6:24 PM Ticket #6733 (New ColabFold PAE format not handled) closed by
- fixed: Fixed. ColabFold made their own JSON format for the PAE and pLDDT …
- 5:48 PM Ticket #3761 (Warning when quitting about WebEnginePage profile released too soon) closed by
- fixed: I no longer see these warning messages with Qt 6.
- 4:39 PM Ticket #6738 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:01 PM Ticket #6735 (OpenGL context error on startup) closed by
- can't reproduce: This has been reported a few times before, I think always on Linux. …
- 1:01 PM Ticket #6737 (Some kind of infinite recursion in geometry.find_close_points()) closed by
- can't reproduce
- 12:39 PM Ticket #6737 (Some kind of infinite recursion in geometry.find_close_points()) created by
- […]
- 10:42 AM Ticket #6736 (Crash iterating over Residues collection) closed by
- can't reproduce: Hi Sergio, Thanks for reporting this problem. I would suggest …
- 10:24 AM Ticket #6734 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 10:24 AM Ticket #6736 (Crash iterating over Residues collection) created by
- […]
- 10:19 AM Ticket #6735 (OpenGL context error on startup) created by
- […]
- 10:18 AM Ticket #6732 (Crash in Ring.aromatic) closed by
- duplicate: Hi Luca, Thanks for reporting this problem. It was fixed about 12 …
- 10:12 AM Ticket #6731 (Hyperlinks give "Your Internet connection is blocked") closed by
- duplicate: Hi Tony, We fixed this irksome problem 6 days ago, so the latest …
- 10:02 AM Ticket #6734 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 2:13 AM Ticket #6733 (New ColabFold PAE format not handled) created by
- […] Screenshot 2022-04-28 at 11.13.18.png
- 1:35 AM Ticket #6732 (Crash in Ring.aromatic) created by
- […]
Apr 27, 2022:
- 11:12 PM Ticket #6731 (Hyperlinks give "Your Internet connection is blocked") created by
- […]
- 8:54 PM Ticket #6067 (Update RCSB biounit fetch to new URLs if needed) closed by
- fixed: Looks like the assembly file fetch should continue to work.
- 8:47 PM Ticket #6469 (AlphaFold vs. JAX) closed by
- fixed: I also updated the ChimeraX 1.4 daily build so it will not be broken …
- 8:44 PM Ticket #6662 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by
- nonchimerax: The usual Intel Mac graphics driver crash.
- 8:42 PM Ticket #6729 (Recording movie: OSError: [Errno 28] No space left on device) closed by
- not a bug
- 8:35 PM Ticket #6437 (Windows fatal exception: code 0x800706ba. No crash) closed by
- not a bug: It looks like the actual crashes associated with the Open dialog and …
- 8:33 PM Ticket #6613 (Crash Mac X11 → Linux) closed by
- can't reproduce: No response from reporter.
- 8:31 PM Ticket #6670 (AlphaFold PAE domain coloring IndexError) closed by
- fixed: Fixed by making better error message. Made ticket #6730 to try to …
- 8:30 PM Ticket #6730 (Make AlphaFold PAE plot coloring work even when residues deleted) created by
- If residues of an AlphaFold structure are deleted then the PAE plot …
- 8:05 PM Ticket #6726 (volume command transparency 0 option hides image) closed by
- fixed: Fixed. Setting transparency to 0 was failing to set the image drawing …
- 7:46 PM Ticket #6729 (Recording movie: OSError: [Errno 28] No space left on device) created by
- […]
- 4:43 PM Ticket #6695 (Problem reading PAE file) closed by
- fixed: Fixed. Gave clear error message if JSON data does not contain …
- 3:53 PM Ticket #6715 (Meeting command broken with Qt 6: AttributeError: ...) closed by
- fixed: Fixed. QAbstractSocket changed in Qt 6 renaming the error signal to …
- 1:34 PM Ticket #6728 (Allow opening a session file while keep existing session models) created by
- Want to be able to merge sessions. Begin forwarded message: From: …
- 1:31 PM Ticket #6727 (Make transparency command work on volume image display) created by
- Currently the transparency command does not work on volume image data. …
- 1:26 PM Ticket #6726 (volume command transparency 0 option hides image) created by
- […]
- 1:01 PM Ticket #6725 (Make PAE plot drag select the corresponding residues) created by
- From: "Jan Gebauer" Subject: Identifying residues based on PAE plot? …
- 12:59 PM Ticket #6724 (Color PAE plots using domain colors) created by
- Gerard suggests coloring PAE plots using the domain colors, I guess …
- 12:44 PM Ticket #6713 (Crash when starting RealSense camera, stack overflow getting VR saved ...) closed by
- can't reproduce: Very strange that it gave a stack overflow in Python core ast module …
- 12:40 PM Ticket #6708 (QQuickWidget: Failed to make context current when creating FBO) closed by
- can't reproduce: Interesting. This is on modern graphics RTX 3050 Ti and it appears Qt …
- 12:26 PM 2022-4-28 created by
- 12:25 PM DeveloperMeetings edited by
- (diff)
- 12:02 PM Ticket #6702 (Problem inverting matrix in 'rotate' mouse mode) closed by
- can't reproduce: Never knew that numpy's linagl code could give an access violation …
- 11:44 AM Ticket #6694 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Unfortunately Intel Mac graphics drivers are very unstable and …
- 11:41 AM Ticket #6693 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- can't reproduce: OpenGL error invalid enumerant in …
- 11:37 AM Ticket #6692 (Problem switching in/out of stereo: 'NoneType' object has no attribute ...) closed by
- duplicate: This was fixed 2 months ago in the daily builds when you reported the …
- 11:34 AM Ticket #6690 (Crash making context current while showing selected atoms) closed by
- nonchimerax: Qt bug crashing in make_current().
- 11:30 AM Ticket #6687 (glClear: invalid framebuffer operation) closed by
- nonchimerax: ChimeraX gave an OpenGL graphics error. It also reported something …
- 11:14 AM Ticket #6686 (Crash in ses_surface_geometry) closed by
- can't reproduce: ChimeraX crashed computing a molecular surface. I have not seen this …
- 10:38 AM Ticket #6723 (Drop support for CentOS 7, Ubuntu 16 and 18) created by
- Can we drop ChimeraX 1.4 distributions on older Linux distributions? …
- 10:11 AM Ticket #6722 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:10 AM Ticket #6721 (Crash in garbage collection during new object allocation) closed by
- duplicate: 1.0
- 9:49 AM Ticket #6720 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:14 AM Ticket #6718 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:10 AM Ticket #6717 (Crash in Qt on exit) closed by
- duplicate
- 6:32 AM Ticket #6722 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 6:31 AM Ticket #6721 (Crash in garbage collection during new object allocation) created by
- […]
- 5:14 AM Ticket #6720 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:25 AM Ticket #6719 (Block trigger handlers) created by
- […]
Apr 26, 2022:
- 8:28 PM Ticket #6718 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 6:39 PM Training edited by
- (diff)
- 6:39 PM Training edited by
- (diff)
- 6:36 PM Ticket #6717 (Crash in Qt on exit) created by
- […]
- 12:50 PM Ticket #6716 (Blast protein duplicate result-window identifiers (more than one bp1)) created by
- If I open a session file with existing blast results bp1, then run …
- 12:24 PM Ticket #6715 (Meeting command broken with Qt 6: AttributeError: ...) created by
- […]
- 12:23 PM Ticket #6714 (Meeting command: AttributeError: type object 'QHostAddress' has no ...) closed by
- fixed: Fixed. Qt 6 enumeration values were not being put in QNetwork module …
- 11:41 AM Ticket #6714 (Meeting command: AttributeError: type object 'QHostAddress' has no ...) created by
- […]
- 11:38 AM Ticket #6713 (Crash when starting RealSense camera, stack overflow getting VR saved ...) created by
- […]
- 11:18 AM Ticket #6667 (Realign with Clustal Omega not finding high identity alignment) closed by
- fixed: Sending input sequences with gaps apparently trips up Clustal Omega …
- 10:28 AM ChangeLog edited by
- (diff)
- 10:06 AM ChangeLog edited by
- (diff)
- 10:03 AM ChangeLog edited by
- (diff)
- 9:16 AM Ticket #6712 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:14 AM Ticket #6711 (Crash using File→Open on Windows) closed by
- can't reproduce: 1.3
- 9:10 AM Ticket #6710 (Crash in event loop) closed by
- can't reproduce: ChimeraX was using 8GB despite being only in the Quickstart guide (per …
- 9:01 AM Ticket #6709 (Crash in event loop) closed by
- can't reproduce
- 8:56 AM Ticket #6707 (Problem destroying status bar) closed by
- duplicate
- 8:50 AM Ticket #6706 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:48 AM Ticket #6705 (Crash using File→Open on Windows) closed by
- can't reproduce: This one's weird. The Windows crash log is for 1.3, but the Python …
- 8:24 AM Ticket #6712 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 8:22 AM Ticket #6711 (Crash using File→Open on Windows) created by
- […]
- 1:11 AM Ticket #6710 (Crash in event loop) created by
- […]
- 1:03 AM Ticket #6709 (Crash in event loop) created by
- […]
- 12:41 AM Ticket #6708 (QQuickWidget: Failed to make context current when creating FBO) created by
- […]
Apr 25, 2022:
- 11:11 PM Ticket #6707 (Problem destroying status bar) created by
- […]
- 6:03 PM Ticket #6671 (2D arrows problems) closed by
- fixed: Fixed by this commit: …
- 4:56 PM Ticket #6706 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:49 PM Ticket #6643 (suggestions for renaming columns from Blast UniRefN searches) closed by
- fixed: I hope …
- 1:56 PM Ticket #6705 (Crash using File→Open on Windows) created by
- […]
- 1:51 PM Ticket #6704 (Empty "Update Bundles" dialog) created by
- […]
- 12:30 PM Ticket #5241 (Blastprotein: Ambiguous behavior of sequence-only hits) closed by
- fixed
- 12:25 PM Ticket #6688 ('MyPage' object has no attribute 'view') closed by
- fixed: Duplicate of #6637 Should be fixed in today's daily builds.
- 12:00 PM Ticket #6701 (Status bar, QScreen has been deleted) closed by
- duplicate
- 11:34 AM Ticket #6703 (Chimera-like selection behavior for left/right arrow keys) created by
- […]
- 11:25 AM Ticket #6699 (Crash showing yes/no dialog question) closed by
- can't reproduce: Hi Chonnikan, Thanks for reporting this problem. I recommend …
- 11:21 AM Ticket #6698 (Crash in event loop after color bychain) closed by
- duplicate
- 11:20 AM Ticket #6697 (Crash in event loop after color bychain) closed by
- can't reproduce
- 11:03 AM Ticket #6689 (Crash using File→Open on Windows and/or in return statementg) closed by
- can't reproduce: Hi Jonas, Thanks for reporting this problem. It is a pretty rare …
- 10:45 AM Ticket #6684 (No error) closed by
- duplicate
- 10:39 AM Ticket #6682 (Crash using File→Open on Windows) closed by
- can't reproduce: 1.3
- 10:36 AM Ticket #6681 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:32 AM Ticket #6680 (Crash in strlen) closed by
- can't reproduce
- 10:29 AM Ticket #6679 (Unknown crash) closed by
- can't reproduce
- 10:28 AM Ticket #6678 (Crash in event loop) closed by
- can't reproduce
- 7:30 AM Ticket #6702 (Problem inverting matrix in 'rotate' mouse mode) created by
- […]
- 3:25 AM Ticket #6701 (Status bar, QScreen has been deleted) created by
- […]
- 2:45 AM Ticket #6700 (Crash using File→Open on Windows and/or in return statement if folder ...) created by
- […]
Apr 24, 2022:
- 8:45 PM Ticket #6699 (Crash showing yes/no dialog question) created by
- […]
- 6:17 PM Ticket #6698 (Crash in event loop after color bychain) created by
- […]
- 6:17 PM Ticket #6697 (Crash in event loop after color bychain) created by
- […]
Apr 23, 2022:
- 8:10 PM Ticket #6696 (Simplify labeling contacting residues) created by
- […]
- 2:14 AM Ticket #6695 (Problem reading PAE file) created by
- […]
Apr 22, 2022:
- 5:13 PM Ticket #6694 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics 655) created by
- […]
- 1:58 PM Ticket #6693 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 1:41 PM Ticket #6692 (Problem switching in/out of stereo: 'NoneType' object has no attribute ...) created by
- […]
- 7:00 AM Ticket #6690 (Crash making context current while showing selected atoms) created by
- […]
- 6:55 AM Ticket #6689 (Crash using File→Open on Windows and/or in return statementg) created by
- […]
- 6:08 AM Ticket #6688 ('MyPage' object has no attribute 'view') created by
- […]
- 5:22 AM Ticket #6687 (glClear: invalid framebuffer operation) created by
- […]
- 3:40 AM Ticket #6686 (Crash in ses_surface_geometry) created by
- […]
- 2:15 AM Ticket #6685 (Crash in event loop) created by
- […]
- 2:13 AM Ticket #6684 (No error) created by
- […]
- 2:13 AM Ticket #6683 (No error) created by
- […]
- 1:57 AM Ticket #6682 (Crash using File→Open on Windows) created by
- […]
Apr 21, 2022:
- 11:38 PM Ticket #6449 (Quick Start tutorial links give "Your Internet connection is blocked") closed by
- fixed: Fixed by setting WebAttribute.LocalContentCanAccessRemoteUrls. It's …
- 11:37 PM Ticket #6681 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 10:11 PM Ticket #6680 (Crash in strlen) created by
- […]
- 8:00 PM Ticket #6679 (Unknown crash) created by
- […]
- 5:58 PM Ticket #6678 (Crash in event loop) created by
- […]
- 5:10 PM Ticket #6675 (Problem after 'close' without 'vseries stop') closed by
- can't reproduce: Looks like you opened a volume series, played it, closed, and opened …
- 4:58 PM Ticket #6677 (Hold ChimeraX plugin development training workshop) created by
- Amith Rangarajan in Matt Jacobson's lab is writing ChimeraX python …
- 3:48 PM Ticket #6674 (Graphics crash, macOS 12.3.1, Intel HD Graphics 6000) closed by
- nonchimerax: Unfortunately Apple's graphics drivers on Intel Macs are not very …
- 3:38 PM Ticket #6673 ('Chain' object has no attribute 'match_maps') closed by
- duplicate: This bug was only in that one particular daily build and is fixed now.
- 3:27 PM Dev2022-4-21 edited by
- (diff)
- 3:16 PM Ticket #6672 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 2:56 PM Ticket #1021 (Compute auxiliary secondary structure info) closed by
- fixed: This actually got implemented 9 months ago (ss_info arg to …
- 2:33 PM Ticket #6676 (mac-arm64: Audit pre-requisites and ensure 3rd party binaries are arm64) created by
- 1:30 PM Dev2022-4-21 edited by
- (diff)
- 1:27 PM Dev2022-4-21 edited by
- (diff)
- 12:43 PM 2022-4-21 edited by
- (diff)
- 11:34 AM Ticket #6675 (Problem after 'close' without 'vseries stop') created by
- […]
- 10:19 AM Ticket #6668 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 9:55 AM Ticket #6663 (Crash processing drop event) closed by
- can't reproduce
- 8:47 AM Ticket #6674 (Graphics crash, macOS 12.3.1, Intel HD Graphics 6000) created by
- […] chimeraX_crash.txt
- 8:10 AM Ticket #6673 ('Chain' object has no attribute 'match_maps') created by
- […]
- 5:25 AM Ticket #6672 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 12:05 AM Ticket #6671 (2D arrows problems) created by
- […]
Apr 20, 2022:
- 10:13 PM Ticket #6670 (AlphaFold PAE domain coloring IndexError) created by
- […]
- 9:50 PM Ticket #6669 (This copy of PyQt is unlicensed on macOS arm64) created by
- When I build ChimeraX on my Mac M1 computer with "make install-rbvi" …
- 9:40 PM Ticket #6668 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 7:05 PM Ticket #6667 (Realign with Clustal Omega not finding high identity alignment) created by
- […] align.fasta
- 6:54 PM Ticket #6666 (Sequence realignment error) closed by
- fixed: Works in daily build.
- 6:51 PM Ticket #6666 (Sequence realignment error) created by
- […] align.fasta
- 6:27 PM Ticket #6665 (Allow Uniprot identifiers with isoform specifier in AlphaFold tool) created by
- […]
- 6:23 PM Ticket #6664 (AlphaFold chain table reports wrong "Seen" residues for fusion proteins) created by
- […]
- 6:02 PM Ticket #5241 (Blastprotein: Ambiguous behavior of sequence-only hits) reopened by
- 5:36 PM Ticket #6663 (Crash processing drop event) created by
- […]
- 4:28 PM Ticket #6662 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by
- […]
- 1:06 PM Ticket #6661 (Speed up AlphaFold prediction on Colab by fetching sequence databases ...) created by
- […]
- 11:47 AM Ticket #6660 (Run AlphaFold prediction using fasta file) created by
- Would be convenient if the AlphaFold tool could accept a pasted in …
- 11:18 AM Ticket #6659 (Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed) closed by
- can't reproduce
- 11:13 AM Ticket #6659 (Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed) created by
- […]
- 11:12 AM Ticket #6657 (Error opening TIFF file: ValueError: cannot select an axis to squeeze ...) closed by
- can't reproduce: It does not look like ChimeraX crashed. It looks like opening a TIFF …
- 10:02 AM Ticket #6658 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:49 AM Ticket #6656 (Crash creating QWebEngineProfile) closed by
- duplicate
- 9:48 AM Ticket #6655 (Crash using QFileDialog.getSaveFileName) closed by
- can't reproduce: 1.3
- 8:03 AM Ticket #6658 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:04 AM Ticket #6657 (Error opening TIFF file: ValueError: cannot select an axis to squeeze ...) created by
- […]
- 1:23 AM Ticket #6656 (Crash creating QWebEngineProfile) created by
- […]
- 1:04 AM Ticket #6655 (Crash using QFileDialog.getSaveFileName) created by
- […]
Apr 19, 2022:
- 7:57 PM Ticket #6654 (Filter out duplicate bug reports) created by
- We have had some bugs that were reported over 100 times. Processing …
- 4:44 PM Ticket #6652 (Failure to parse NR blast results) closed by
- fixed
- 4:43 PM 2022-4-14 edited by
- (diff)
- 4:35 PM Dev2022-4-21 created by
- 4:26 PM 2022-4-21 created by
- 4:25 PM DeveloperMeetings edited by
- (diff)
- 3:04 PM Ticket #6653 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 2:19 PM Ticket #6652 (Failure to parse NR blast results) created by
- […]
- 11:24 AM Ticket #6651 (RFE: allow specifying color gradient as background) created by
- allow specifying a color gradient as the background of the graphics …
- 11:22 AM Ticket #6650 (RFE: allow specifying image from file as background) created by
- allow specifying image (read from file) as the background of the …
- 11:12 AM Ticket #6642 (Cannot restore session that shows blast: unexpected keyword argument ...) closed by
- fixed
- 9:43 AM Ticket #6649 (Fatal Qt error at startup) closed by
- can't reproduce
- 9:39 AM Ticket #6648 (Crash in event loop) closed by
- can't reproduce
- 6:43 AM Ticket #6649 (Fatal Qt error at startup) created by
- […]
- 3:54 AM Ticket #6648 (Crash in event loop) created by
- […]
Apr 18, 2022:
- 6:55 PM ChangeLog edited by
- (diff)
- 6:03 PM Ticket #6645 (Error getting mmCIF templates: URL can't contain control characters) closed by
- duplicate: Duplicate of #6508
- 5:51 PM Ticket #6641 (differences in .cxc execution between 1.1 and 1.4) closed by
- fixed: I hid rapid access before testing the script and the waits did not …
- 5:02 PM Ticket #6647 (animating clipping planes) created by
- […]
- 5:00 PM Ticket #6646 (RFE: show modality of DICOM (medical imaging) data) created by
- It would be useful to make the modality information for each DICOM …
- 4:57 PM Ticket #6645 (Error getting mmCIF templates: URL can't contain control characters) created by
- […]
- 3:45 PM Ticket #6640 (Crash opening .pytest_cache as DICOM) closed by
- can't reproduce: I am a bit mystified why your command log shows trying to open hidden …
- 3:39 PM Ticket #6635 (File history corrupted) closed by
- can't reproduce: Thanks for reporting the problem. I suspect ChimeraX must have …
- 1:37 PM Ticket #6644 (Crash updating log) closed by
- can't reproduce
- 1:22 PM Ticket #6639 (No module named 'pwd') closed by
- duplicate: Hi Paul, Thanks for reporting this problem. It is fixed in the …
- 1:19 PM Ticket #6638 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Lingyi, Thanks for reporting this problem. We believe it is a bug …
- 1:15 PM Ticket #6637 ('MyPage' object has no attribute 'view') closed by
- duplicate: Hi Shruthi, Thanks for reporting this problem. It is fixed in the …
- 1:01 PM Ticket #6636 (setattr type) closed by
- not a bug: Hi Tristan, Setattr guesses the most natural looking type from the …
- 11:53 AM Ticket #6644 (Crash updating log) created by
- […]
- 11:51 AM Ticket #6633 (Non-UTF8 character in SDF file) closed by
- duplicate
- 11:48 AM Ticket #6632 (Non-UTF8 character in SDF file) closed by
- can't reproduce: Would need the SDF to judge validity of report and possible remedies.
- 11:45 AM Ticket #6643 (suggestions for renaming columns from Blast UniRefN searches) created by
- The contents of the "Name" field are not informative. What do you …
- 11:37 AM Ticket #6630 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 11:36 AM Ticket #6629 (Crash redrawing widget) closed by
- can't reproduce: Old Qt
- 11:34 AM Ticket #6628 (IPython crash) closed by
- duplicate
- 11:33 AM Ticket #6627 (IPython crash) closed by
- can't reproduce: User was undoubtedly trying to do something fancy, though I have no …
- 11:29 AM Ticket #6625 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 11:23 AM Ticket #6642 (Cannot restore session that shows blast: unexpected keyword argument ...) created by
- […]
- 10:54 AM Ticket #6641 (differences in .cxc execution between 1.1 and 1.4) created by
- I've attached a script based on the one from ticket #6624 -- the only …
- 10:33 AM Ticket #6624 ('Sequence' object has no attribute 'structure') closed by
- duplicate: Hi Chris, Thanks for reporting this problem. There are two ways you …
- 9:48 AM Ticket #6623 (Error assigning hydrogen charges) closed by
- duplicate: Hydrogens no longer charged this way
- 9:44 AM Ticket #6615 (Crash copying custom attributes for Crystal Contacts) closed by
- can't reproduce
- 9:10 AM Ticket #6640 (Crash opening .pytest_cache as DICOM) created by
- […]
- 7:44 AM Ticket #6639 (No module named 'pwd') created by
- […]
- 5:20 AM Ticket #6638 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:02 AM Ticket #6637 ('MyPage' object has no attribute 'view') created by
- […]
Apr 17, 2022:
- 5:31 AM Ticket #6636 (setattr type) created by
- […]
- 5:09 AM Ticket #6635 (File history corrupted) created by
- […]
- 1:14 AM Ticket #6634 (Problem removing existing sequence viewer during session restore) created by
- […]
Apr 16, 2022:
- 5:03 PM Ticket #6633 (Non-UTF8 character in SDF file) created by
- […]
- 4:42 PM Ticket #6632 (Non-UTF8 character in SDF file) created by
- […]
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