Opened 4 years ago

Closed 4 years ago

Last modified 4 years ago

#6826 closed defect (duplicate)

No valid OpenGL context on Linux Wayland

Reported by: chimerax-bug-report@… Owned by:
Priority: normal Milestone:
Component: Window Toolkit Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.15.0-27-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.4rc202205060510 (2022-05-06 05:10:33 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.4rc202205060510 (2022-05-06)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 151, in status  
self._draw_text(msg, color, secondary)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 161, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1579, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1539, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 752, in draw  
self.draw_self(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 763, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 786, in _draw_geometry  
ds.activate_bindings(renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1898, in activate_bindings  
self.update_buffers()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1888, in update_buffers  
bi.bind_shader_variable(b)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2514, in bind_shader_variable  
GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None)  
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/GL/VERSION/GL_2_0.py", line 469, in glVertexAttribPointer  
contextdata.setValue( key, array )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 58, in setValue  
context = getContext( context )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 151, in status  
self._draw_text(msg, color, secondary)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 161, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1579, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1539, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 752, in draw  
self.draw_self(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 763, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 786, in _draw_geometry  
ds.activate_bindings(renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1898, in activate_bindings  
self.update_buffers()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1888, in update_buffers  
bi.bind_shader_variable(b)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2514, in bind_shader_variable  
GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None)  
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/GL/VERSION/GL_2_0.py", line 469, in glVertexAttribPointer  
contextdata.setValue( key, array )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 58, in setValue  
context = getContext( context )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 151, in status  
self._draw_text(msg, color, secondary)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 161, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1579, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1539, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 752, in draw  
self.draw_self(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 763, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 786, in _draw_geometry  
ds.activate_bindings(renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1898, in activate_bindings  
self.update_buffers()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1888, in update_buffers  
bi.bind_shader_variable(b)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2514, in bind_shader_variable  
GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None)  
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/GL/VERSION/GL_2_0.py", line 469, in glVertexAttribPointer  
contextdata.setValue( key, array )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 58, in setValue  
context = getContext( context )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 151, in status  
self._draw_text(msg, color, secondary)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 161, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1579, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1539, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 752, in draw  
self.draw_self(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 763, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 786, in _draw_geometry  
ds.activate_bindings(renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1898, in activate_bindings  
self.update_buffers()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1888, in update_buffers  
bi.bind_shader_variable(b)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2514, in bind_shader_variable  
GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None)  
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/GL/VERSION/GL_2_0.py", line 469, in glVertexAttribPointer  
contextdata.setValue( key, array )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 58, in setValue  
context = getContext( context )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 151, in status  
self._draw_text(msg, color, secondary)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 161, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1579, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1539, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 752, in draw  
self.draw_self(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 763, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 786, in _draw_geometry  
ds.activate_bindings(renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1898, in activate_bindings  
self.update_buffers()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1888, in update_buffers  
bi.bind_shader_variable(b)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2514, in bind_shader_variable  
GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None)  
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/GL/VERSION/GL_2_0.py", line 469, in glVertexAttribPointer  
contextdata.setValue( key, array )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 58, in setValue  
context = getContext( context )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 151, in status  
self._draw_text(msg, color, secondary)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 161, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1579, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1539, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 752, in draw  
self.draw_self(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 763, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 786, in _draw_geometry  
ds.activate_bindings(renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1898, in activate_bindings  
self.update_buffers()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1888, in update_buffers  
bi.bind_shader_variable(b)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2514, in bind_shader_variable  
GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None)  
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/GL/VERSION/GL_2_0.py", line 469, in glVertexAttribPointer  
contextdata.setValue( key, array )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 58, in setValue  
context = getContext( context )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
  
See log for complete Python traceback.  
  

> set bgColor black

> open /home/mariosg/Documents/Hydration_Project/1H2C.pdb

1H2C.pdb title:  
Ebola virus matrix protein VP40 N-terminal domain In complex with RNA (high-
resolution VP40[55-194] variant). [more info...]  
  
Chain information for 1H2C.pdb #1  
---  
Chain | Description | UniProt  
A | matrix protein VP40 | VP40_EBOZM  
R | 5'-R(*up*GP*ap)-3' |  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/filehistory.py", line 73, in <lambda>  
t.add_handler('frame drawn', lambda *args, s=self: s.capture_thumbnails_cb())  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/filehistory.py", line 85, in capture_thumbnails_cb  
fs.capture_image(models, ses)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/filehistory.py", line 173, in capture_image  
self.image = models_image(session, models, size)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/filehistory.py", line 235, in models_image  
image = v.image(width, height, camera = c, drawings = models)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 415, in image  
rgba = self.image_rgba(width=width, height=height, supersample=supersample,  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 465, in image_rgba  
self.draw(c, drawings, swap_buffers = False)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 165, in draw  
self._draw_scene(camera, drawings)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 235, in _draw_scene  
draw_opaque(r, opaque_drawings)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1526, in draw_opaque  
_draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1539, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 752, in draw  
self.draw_self(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 759, in draw_self  
self._draw_geometry(renderer, opaque_only = any_transp)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 786, in _draw_geometry  
ds.activate_bindings(renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1898, in activate_bindings  
self.update_buffers()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1888, in update_buffers  
bi.bind_shader_variable(b)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2514, in bind_shader_variable  
GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None)  
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/GL/VERSION/GL_2_0.py", line 469, in glVertexAttribPointer  
contextdata.setValue( key, array )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 58, in setValue  
context = getContext( context )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
Error processing trigger "frame drawn":  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
  
See log for complete Python traceback.  
  
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
Attempt to retrieve context when no valid context  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 165, in draw  
self._draw_scene(camera, drawings)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 235, in _draw_scene  
draw_opaque(r, opaque_drawings)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1526, in draw_opaque  
_draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1539, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 752, in draw  
self.draw_self(renderer, draw_pass)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 759, in draw_self  
self._draw_geometry(renderer, opaque_only = any_transp)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 786, in _draw_geometry  
ds.activate_bindings(renderer)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1898, in activate_bindings  
self.update_buffers()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1888, in update_buffers  
bi.bind_shader_variable(b)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2514, in bind_shader_variable  
GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None)  
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/GL/VERSION/GL_2_0.py", line 469, in glVertexAttribPointer  
contextdata.setValue( key, array )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 58, in setValue  
context = getContext( context )  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/OpenGL/contextdata.py", line 40, in getContext  
raise error.Error(  
OpenGL.error.Error: Attempt to retrieve context when no valid context  
  




OpenGL version: 4.3 (Core Profile) Mesa 22.0.1
OpenGL renderer: NV118
OpenGL vendor: nouveau

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: wayland

XDG_SESSION_TYPE=wayland
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
WAYLAND_DISPLAY=wayland-0
GNOME_SETUP_DISPLAY=:1
DISPLAY=:0
Manufacturer: ASUSTeK COMPUTER INC.
Model: X556UV
OS: Ubuntu 22.04 jammy
Architecture: 64bit ELF
Virtual Machine: none
CPU: 4 Intel(R) Core(TM) i5-6198DU CPU @ 2.30GHz
Cache Size: 3072 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:           7.6Gi       3.9Gi       168Mi       1.1Gi       3.5Gi       2.4Gi
	Swap:          2.0Gi       387Mi       1.6Gi

Graphics:
	00:02.0 VGA compatible controller [0300]: Intel Corporation HD Graphics 510 [8086:1906] (rev 07)	
	Subsystem: ASUSTeK Computer Inc. HD Graphics 510 [1043:10ee]	
	Kernel driver in use: i915

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4rc202205060510
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.2
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    distro: 1.6.0
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.8
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 22.3.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

Change History (2)

comment:1 by Zach Pearson, 4 years ago

Component: Unassigned → Window Toolkit
Platform: → all
Project: → ChimeraX
Resolution: → duplicate
Status: new → closed

Duplicate of #6824

comment:2 by Zach Pearson, 4 years ago

Summary: ChimeraX bug report submission → No valid OpenGL context on Linux Wayland
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