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Opened 3 years ago
Closed 3 years ago
#6718 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.19041
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChWindows fatal exception: code 0xi8001010eme
raX_main.Windows fatal exception: py"code 0x, line 8001010e1018
in
Windows fatal exception: File code 0x8001010e
"C:\Program Files\ChimeraX 1.Windows fatal exception: 3\bin\lib\runpy.py"code 0x, line 87 in _run_code
8001010e
File "C:\Program Files\ChimeraXWindows fatal exception: code 0x8001010e
1.3\bin\Windows fatal exception: lib\runpy.pycode 0x"8001010e
, line 197 in Windows fatal exception: code 0x8001010e
_Windows fatal exception: code 0x8001010e
rWindows fatal exception: code 0xun_module_as_main
8001010eWindows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"Windows fatal exception: code 0x8001010e
, line 1018 in
Windows fatal exception: File "C:\Pcode 0x8001010e
rogram Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"Windows fatal exception: code 0x8001010e
, line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Thread 0xWindows fatal exception: code 0x8001010e
00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packageWindows fatal exception: code 0x8001010e
s\chimeWindows fatal exception: rax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\C8001010ehimeraX_main.py"
, line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_maiWindows fatal exception: n.pcode 0x8001010e
y"Windows fatal exception: code 0x8001010e
, line Windows fatal exception: code 0x8001010e
1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _rWindows fatal exception: un_code
File "C:\Program Files\ChimeraX 1.3\bin\code 0x8001010e
lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_commaWindows fatal exception: code 0x8001010end\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "Windows fatal exception: C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\guicode 0x8001010e
.Windows fatal exception: code 0x8001010e
py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packagesWindows fatal exception: \chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"code 0x8001010e
, line Windows fatal exception: code 0x8001010e
867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX code 0x1.3\bin\lib\site-packages\chimerax\open_8001010ecommand\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"
, line 867Windows fatal exception: code 0x8001010e
in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.pyWindows fatal exception: ", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
code 0xWindows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Fi8001010eles\Chi
meraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\ProWindows fatal exception: code 0xWindows fatal exception: 8001010e
gWindows fatal exception: code 0x8001010e
rWindows fatal exception: code 0x8001010ecode 0x
amWindows fatal exception: code 0x8001010e8001010e
FWindows fatal exception: code 0x8001010e
ileWindows fatal exception: code 0x8001010e
sWindows fatal exception: code 0x8001010e
\Windows fatal exception: code 0x8001010eWindows fatal exception:
code 0x8001010eWindows fatal exception: code 0x8001010eC
himeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"
, line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\binWindows fatal exception: \licode 0xb\runp8001010ey.py", line 87 in _run_
cWindows fatal exception: code 0x8001010e
ode
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
Windows fatal exception: code 0x8001010e
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: , line 301 in event_loop
code 0x File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File 8001010e
"C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"Windows fatal exception: code 0x8001010e
, line Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e1018 in
Windows fatal exception: code 0x8001010e
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"Windows fatal exception: , line 87 in code 0x8001010e
_run_code
Windows fatal exception: File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
code 0x8001010e
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\ProWindows fatal exception: code 0x8001010e
gram Files\ChimeraX 1.3Windows fatal exception: code 0x8001010e
\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\oWindows fatal exception: code 0x8001010e
pen_command\dWindows fatal exception: code 0x8001010e
ialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.pWindows fatal exception: y", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\libcode 0x8001010e
\Windows fatal exception: code 0x8001010e
siteWindows fatal exception: code 0x8001010e
-Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010ep
acWindows fatal exception: code 0x8001010e8001010e
kaWindows fatal exception: ges\ChimeraX_main.py"Windows fatal exception: , line 867 in code 0xinit
File "C:\Program Files\ChimeraX 1.3code 0x\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"8001010e, line 87 in 8001010e_
run_code
Windows fatal exception: code 0x8001010e
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197Windows fatal exception: in _run_module_as_main
code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
Windows fatal exception: code 0x8001010e
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in Windows fatal exception:
code 0x8001010e
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
Windows fatal exception: code 0x8001010e
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.3\bin\lib\site-packWindows fatal exception: ages\ChimeraX_main.py"code 0x, line 867 in init
File "C:\Prog8001010eram Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py
", line 1018 in
Windows fatal exception: code 0x8001010e
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
[deleted to fit within ticket limits]
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 235 in swap_buffers
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 496 in swap_buffers
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py", line 179 in draw
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\sideview\tool.py", line 276 in render
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\sideview\tool.py", line 112 in _redraw
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 134 in invoke
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 217 in _activate
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 186 in activate
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 354 in activate_trigger
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 89 in draw_new_frame
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 139 in _redraw_timer_callback
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_Windows fatal exception: code 0xopen_file_dia8001010elog
File "C:\Program Files\ChimeraX 1.3\bin\
libWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
\Windows fatal exception: code 0x8001010e
site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line 107 in
code 0x8001010e
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in Windows fatal exception: code 0x8001010e
eWindows fatal exception: code 0x8001010e
vent_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program FilesWindows fatal exception: code 0x\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.p8001010ey"
, line 1018Windows fatal exception: code 0x8001010e
in Windows fatal exception: code 0x8001010e
Windows fatal exception: File "C:\Prcode 0x8001010e
oWindows fatal exception: code 0x8001010e
gram Files\ChimeraX 1.3\bin\lib\runpy.Windows fatal exception: code 0x8001010e
pWindows fatal exception: code 0x8001010e
yWindows fatal exception: code 0x8001010e
"Windows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010e, line
87 in Windows fatal exception: code 0x8001010e
_Windows fatal exception: code 0x8001010e
rWindows fatal exception: code 0xu8001010e
n_code
File "C:\Program Files\ChimeraX8001010e 1
.Windows fatal exception: 3\Windows fatal exception: code 0xbin\code 0xlib\runpy.py", line 197 in _run_module_as_main
8001010eWindows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packa8001010eges\
chimeWindows fatal exception: code 0x8001010e
rax\open_comma
nd\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\Windows fatal exception: code 0x8001010e
bin\lib\site-Windows fatal exception: code 0x8001010e
packagesWindows fatal exception: code 0x8001010e
\chimerax\open_cWindows fatal exception: code 0x8001010e
ommand\dialog.py", line 107 in Windows fatal exception: code 0x8001010e
File "C:Windows fatal exception: code 0x8001010e
\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerWindows fatal exception: ax\ui\gui.py", line 301 in event_loopcode 0x8001010e
File "C:\Program Windows fatal exception: code 0x8001010eFiles\ChimeraX 1.3\bin\lib\site-package
s\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\Windows fatal exception: code 0x8001010e
lib\site-pWindows fatal exception: code 0x8001010e
ackages\chimeWindows fatal exception: code 0x8001010e
rax\open_commWindows fatal exception: code 0x8001010e
and\dialog.py", line 107 in
Windows fatal exception: code 0x8001010e
File Windows fatal exception: code 0x8001010e
"C:\Program FWindows fatal exception: code 0x8001010e
iWindows fatal exception: code 0x8001010e
les\ChimeraX Windows fatal exception: code 0x8001010e
1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:Windows fatal exception: code 0x8001010e
\Windows fatal exception: code 0x8001010e
Program Files\ChimeraX 1.3\bin\liWindows fatal exception: code 0x8001010e
b\site-packages\ChimeraX_main.Windows fatal exception: code 0x8001010e
py"Windows fatal exception: code 0x8001010e
, line 867 in init
Windows fatal exception: code 0x8001010e
File "C:\Program FilesWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
\Windows fatal exception: code 0x8001010e
ChimeraX 1.3\bin\lib\site-packages\ChimeraX_maWindows fatal exception: code 0x8001010e
in.py"Windows fatal exception: code 0x8001010e
, line 1018 in
File "C:\PrWindows fatal exception: code 0x8001010e
ogram Files\ChimeraX 1.3\bin\Windows fatal exception: code 0x8001010e
lWindows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010e
iWindows fatal exception: code 0x8001010e
bWindows fatal exception: code 0x8001010e
8001010eWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
\Windows fatal exception: code 0x8001010e
runpy.py", line 87 in _run_code
File "C:\Program Files\ChimWindows fatal exception: code 0x8001010e
eraX 1.3\binWindows fatal exception: code 0x8001010e
\lib\runpy.py"Windows fatal exception: code 0x8001010e
, line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\Windows fatal exception: code 0x8001010e
bin\lib\siWindows fatal exception: code 0x8001010e
te-packages\cWindows fatal exception: code 0x8001010e
himerax\open_commWindows fatal exception: code 0x8001010e
and\Windows fatal exception: code 0x8001010e
dialog.pWindows fatal exception: code 0x8001010e
y", line 107 in
File "C:\Program Files\ChimeraX 1.3\bWindows fatal exception: in\lib\site-packages\chimerWindows fatal exception: code 0x8001010e
aWindows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010e
8001010eWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
xWindows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
\Windows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010e
ui\gui.py", line 301 in event_loop
File "C:\Progra8001010e
m Files\ChimeraX 1.3\biWindows fatal exception: code 0x8001010e
n\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_codeWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e File "C:\Program
Files\ChiWindows fatal exception: code 0x8001010e
meraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\Windows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0xs8001010e
code 0xWindows fatal exception: code 0xi8001010e
8001010eWindows fatal exception: code 0x8001010e
tWindows fatal exception: code 0x8001010e
eWindows fatal exception: code 0x8001010e
-Windows fatal exception: code 0x8001010e
pWindows fatal exception: code 0x8001010e
aWindows fatal exception: code 0x8001010e
ckages\chimera
x\open_commanWindows fatal exception: code 0x8001010e
d\dialog.py", line 135 in show_open_file_dialog
Windows fatal exception: code 0x8001010e
File "C:\Program FilWindows fatal exception: code 0x8001010e
es\ChimeWindows fatal exception: code 0x8001010e
raX 1.3\bin\lib\site-packages\chimerax\oWindows fatal exception: code 0x8001010e
pen_command\dialWindows fatal exception: code 0x8001010e
og.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002dc4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\geometry\vector.py", line 66 in distance_squared
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\geometry\vector.py", line 71 in distance
Windows fatal exception: access violation
===== Log before crash start =====
> open C:/Users/asus/Desktop/cryosparc_P698_J35_002_volume_map_sharp.mrc
Opened cryosparc_P698_J35_002_volume_map_sharp.mrc as #1, grid size
110,110,110, pixel 4.31, shown at level 0.136, step 1, values float32
> volume #1 level 0.2009
> volume #1 level 1.136
> open C:/Users/asus/Desktop/20211214_prc2_P524_J153_dock_C36_complex-
> coot-0_real_space_refined.pdb
Chain information for 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
M | No description available
N | No description available
P | No description available
Q | No description available
Z | No description available
> ui mousemode right "move picked models"
> view matrix models #2,1,0,0,27.934,0,1,0,-4.041,0,0,1,-22.982
> view matrix models #2,1,0,0,28.414,0,1,0,-3.7818,0,0,1,-22.833
> view matrix models #2,1,0,0,79.831,0,1,0,-1.4168,0,0,1,-48.926
> view matrix models #2,1,0,0,144.16,0,1,0,40.911,0,0,1,-16.472
> view matrix models #2,1,0,0,162.67,0,1,0,42.327,0,0,1,-24.936
> view matrix models #2,1,0,0,167.77,0,1,0,43.428,0,0,1,-26.089
> view matrix models #2,1,0,0,177.13,0,1,0,48.811,0,0,1,-22.647
> view matrix models #2,1,0,0,179.64,0,1,0,50.336,0,0,1,-21.595
> view matrix models #2,1,0,0,156.91,0,1,0,23.562,0,0,1,9.007
> view matrix models #2,1,0,0,154.65,0,1,0,21.447,0,0,1,14.005
> view matrix models #2,1,0,0,70.908,0,1,0,-106.36,0,0,1,20.603
> view matrix models #2,1,0,0,68.893,0,1,0,-108.55,0,0,1,23.99
> view matrix models #2,1,0,0,67.736,0,1,0,-107.5,0,0,1,5.7239
> view matrix models #2,1,0,0,67.39,0,1,0,-107.53,0,0,1,0.82515
> view matrix models #2,1,0,0,67.391,0,1,0,-108.1,0,0,1,1.7938
> view matrix models #2,1,0,0,59.738,0,1,0,-73.081,0,0,1,-3.1525
> view matrix models #2,1,0,0,55.814,0,1,0,-50.983,0,0,1,-5.9188
> view matrix models #2,1,0,0,54.331,0,1,0,-38.042,0,0,1,-7.22
> view matrix models #1,1,0,0,-4.6005,0,1,0,11.158,0,0,1,-2.423
> view matrix models #1,1,0,0,10.691,0,1,0,-105.75,0,0,1,10.071
> view matrix models #1,1,0,0,12.429,0,1,0,-112.63,0,0,1,11.135
> view matrix models #1,1,0,0,15.874,0,1,0,-128.8,0,0,1,13.384
> view matrix models #1,1,0,0,38.431,0,1,0,-199.83,0,0,1,26.172
> view matrix models #2,1,0,0,46.674,0,1,0,-34.266,0,0,1,-10.429
> view matrix models #2,1,0,0,30.183,0,1,0,-28.935,0,0,1,-17.186
> view matrix models #1,1,0,0,70.577,0,1,0,-194.24,0,0,1,38.454
> view matrix models #1,1,0,0,-4.7916,0,1,0,-198.67,0,0,1,9.1759
> view matrix models #2,1,0,0,23.962,0,1,0,-13.51,0,0,1,-43.481
> view matrix models #2,1,0,0,23.703,0,1,0,-13.318,0,0,1,-44.686
> view matrix models #2,1,0,0,34.208,0,1,0,-25.459,0,0,1,3.0338
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> view matrix models #2,1,0,0,33.342,0,1,0,-24.791,0,0,1,-0.69956
> view matrix models #2,1,0,0,33.802,0,1,0,-25.078,0,0,1,1.3573
> view matrix models #2,1,0,0,33.748,0,1,0,-25.171,0,0,1,0.97698
> view matrix models #2,1,0,0,31.182,0,1,0,-21.485,0,0,1,-8.1745
> view matrix models #2,1,0,0,31.845,0,1,0,-24.672,0,0,1,-8.3135
> view matrix models #2,1,0,0,31.994,0,1,0,-24.954,0,0,1,-7.8555
> view matrix models #2,1,0,0,-42.146,0,1,0,-102.68,0,0,1,79.662
> view matrix models #2,1,0,0,-41.38,0,1,0,-101.88,0,0,1,78.768
> view matrix models #2,1,0,0,-67.461,0,1,0,-26.636,0,0,1,57.453
> view matrix models #2,1,0,0,-67.16,0,1,0,-27.037,0,0,1,58.592
> view matrix models #2,1,0,0,-66.073,0,1,0,-29.718,0,0,1,60.354
> view matrix models #2,1,0,0,-67.215,0,1,0,-32.119,0,0,1,48.519
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> view matrix models #2,1,0,0,-71.15,0,1,0,-47.539,0,0,1,99.206
> view matrix models #2,1,0,0,-73.443,0,1,0,-13.99,0,0,1,109.06
> view matrix models #2,1,0,0,-68.527,0,1,0,19.506,0,0,1,39.144
> view matrix models #2,1,0,0,-72.835,0,1,0,30.187,0,0,1,81.885
> view matrix models #2,1,0,0,-72.563,0,1,0,22.842,0,0,1,82.273
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> view matrix models #2,1,0,0,-58.554,0,1,0,-162.37,0,0,1,12.936
> view matrix models #1,1,0,0,-4.9528,0,1,0,-197.4,0,0,1,10.369
> view matrix models #2,1,0,0,-58.692,0,1,0,-153.89,0,0,1,10.545
> view matrix models #2,1,0,0,27.681,0,1,0,-175.86,0,0,1,37.235
> view matrix models #2,1,0,0,36.738,0,1,0,-168.56,0,0,1,20.193
> view matrix models #2,1,0,0,3.9644,0,1,0,-177.4,0,0,1,45.542
> view matrix models #1,1,0,0,-17.908,0,1,0,-196.33,0,0,1,10.966
> view matrix models #2,1,0,0,4.0511,0,1,0,-174.99,0,0,1,40.556
> fitmap #2 inMap #1
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P698_J35_002_volume_map_sharp.mrc (#1) using 13508 atoms
average map value = 1.823, steps = 156
shifted from previous position = 30.7
rotated from previous position = 70.3 degrees
atoms outside contour = 4651, contour level = 1.1363
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P698_J35_002_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.36622337 -0.24130193 -0.89869562 394.47319348
-0.03229364 0.96191451 -0.27143618 107.73401327
0.92996643 0.12842842 0.34448306 -39.74022468
Axis 0.21229844 -0.97088388 0.11096789
Axis point 236.00750365 0.00000000 278.47029733
Rotation angle (degrees) 70.34775350
Shift along axis -25.26106251
> view matrix models
> #2,0.36622,-0.2413,-0.8987,378,-0.032294,0.96191,-0.27144,-87.426,0.92997,0.12843,0.34448,-41.324
> view matrix models
> #2,0.36622,-0.2413,-0.8987,376.56,-0.032294,0.96191,-0.27144,-86.89,0.92997,0.12843,0.34448,-39.7
> ui mousemode right select
> select #1
2 models selected
> transparency
Missing or invalid "percent" argument: Expected a number
> transparency 0.5
> lighting soft
> transparency sel 0
> transparency sel 0.5
> select clear
Drag select of 1 cryosparc_P698_J35_002_volume_map_sharp.mrc , 22 atoms
> ui mousemode right "move picked models"
> view matrix models
> #2,0.36622,-0.2413,-0.8987,379.84,-0.032294,0.96191,-0.27144,-20.683,0.92997,0.12843,0.34448,-34.837
> view matrix models
> #2,0.36622,-0.2413,-0.8987,371.08,-0.032294,0.96191,-0.27144,-34.291,0.92997,0.12843,0.34448,-68.59
> view matrix models
> #2,0.36622,-0.2413,-0.8987,377.21,-0.032294,0.96191,-0.27144,-86.137,0.92997,0.12843,0.34448,-37.171
> view matrix models
> #2,0.36622,-0.2413,-0.8987,377.21,-0.032294,0.96191,-0.27144,-85.96,0.92997,0.12843,0.34448,-37.186
> view matrix models
> #2,0.36622,-0.2413,-0.8987,377.21,-0.032294,0.96191,-0.27144,-85.783,0.92997,0.12843,0.34448,-37.202
> ui mousemode right select
> select clear
> select #1
2 models selected
> transparency #1.1 30
Drag select of 3 atoms
> select /C:181@CB
1 atom, 1 residue, 1 model selected
> select clear
> ui mousemode right "move picked models"
> view matrix models
> #2,0.36622,-0.2413,-0.8987,377,-0.032294,0.96191,-0.27144,-84.315,0.92997,0.12843,0.34448,-38.146
> view matrix models
> #2,0.36622,-0.2413,-0.8987,376.88,-0.032294,0.96191,-0.27144,-83.476,0.92997,0.12843,0.34448,-38.686
> view matrix models
> #2,0.36622,-0.2413,-0.8987,376.85,-0.032294,0.96191,-0.27144,-83.267,0.92997,0.12843,0.34448,-38.821
> view matrix models
> #2,0.36622,-0.2413,-0.8987,379.59,-0.032294,0.96191,-0.27144,-87.902,0.92997,0.12843,0.34448,-25.362
> view matrix models
> #2,0.36622,-0.2413,-0.8987,380.77,-0.032294,0.96191,-0.27144,-95.565,0.92997,0.12843,0.34448,-32.677
> view matrix models
> #2,0.36622,-0.2413,-0.8987,401.87,-0.032294,0.96191,-0.27144,-132.09,0.92997,0.12843,0.34448,-37.513
> view matrix models
> #2,0.36622,-0.2413,-0.8987,402.76,-0.032294,0.96191,-0.27144,-133.5,0.92997,0.12843,0.34448,-37.233
> view matrix models
> #2,0.36622,-0.2413,-0.8987,378.39,-0.032294,0.96191,-0.27144,-90.284,0.92997,0.12843,0.34448,-28.068
> hide #!1 models
> view matrix models
> #2,0.36622,-0.2413,-0.8987,404.87,-0.032294,0.96191,-0.27144,-129.01,0.92997,0.12843,0.34448,-41.216
> view matrix models
> #2,0.36622,-0.2413,-0.8987,404.92,-0.032294,0.96191,-0.27144,-129.12,0.92997,0.12843,0.34448,-41.597
> show #!1 models
> view matrix models #1,1,0,0,-17.783,0,1,0,-196.81,0,0,1,10.862
> view matrix models #1,1,0,0,22.528,0,1,0,-351.79,0,0,1,-7.9854
> view matrix models #1,1,0,0,22.591,0,1,0,-352.03,0,0,1,-8.0374
> view matrix models #1,1,0,0,22.653,0,1,0,-352.27,0,0,1,-8.0894
> hide #!2 models
> show #!2 models
> view matrix models
> #2,0.36622,-0.2413,-0.8987,320.19,-0.032294,0.96191,-0.27144,-338.79,0.92997,0.12843,0.34448,-95.357
> view matrix models
> #2,0.36622,-0.2413,-0.8987,388.24,-0.032294,0.96191,-0.27144,-230.18,0.92997,0.12843,0.34448,-49.76
> view matrix models
> #2,0.36622,-0.2413,-0.8987,420.45,-0.032294,0.96191,-0.27144,-250.05,0.92997,0.12843,0.34448,-58.807
> ui mousemode right "rotate selected models"
> ui mousemode right select
> select /A:543@CB
1 atom, 1 residue, 1 model selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> rotate sel 180
Unknown command: rotate sel 180
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.36622,-0.2413,-0.8987,419.29,-0.032294,0.96191,-0.27144,-249.54,0.92997,0.12843,0.34448,-58.364
> view matrix models
> #2,0.36622,-0.2413,-0.8987,408.58,-0.032294,0.96191,-0.27144,-246.08,0.92997,0.12843,0.34448,-56.86
> view matrix models
> #2,0.36622,-0.2413,-0.8987,413.29,-0.032294,0.96191,-0.27144,-246.73,0.92997,0.12843,0.34448,-55.693
> view matrix models
> #2,0.36622,-0.2413,-0.8987,413.53,-0.032294,0.96191,-0.27144,-246.79,0.92997,0.12843,0.34448,-55.691
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.54622,-0.54549,-0.63568,385.89,0.11851,0.80158,-0.58602,-182.24,0.82922,0.24476,0.50249,-90.264
> view matrix models
> #2,0.46371,-0.67849,0.56976,188.56,0.73542,-0.063864,-0.67459,-115.09,0.49409,0.73183,0.46936,-113.92
> view matrix models
> #2,0.41943,-0.64279,0.64102,176.01,0.76788,-0.12542,-0.6282,-118.56,0.48419,0.75571,0.44098,-111.03
> view matrix models
> #2,0.19022,-0.30183,0.93419,95.654,0.48913,-0.79592,-0.35675,11.762,0.85122,0.5248,-0.0037674,-48.579
> view matrix models
> #2,0.16893,-0.12902,0.97715,57.607,0.47811,-0.85622,-0.19571,-6.3234,0.8619,0.50025,-0.082954,-30.152
> view matrix models
> #2,0.16232,-0.023757,0.98645,36.55,0.49985,-0.85997,-0.10296,-28.179,0.85076,0.50979,-0.12771,-20.987
> view matrix models
> #2,0.24042,-0.35464,0.90356,102.34,0.54507,-0.72092,-0.42799,0.52405,0.80318,0.5954,0.019981,-57.776
> view matrix models
> #2,0.17936,-0.49085,0.85258,150.72,0.29198,-0.80103,-0.52259,83.627,0.93946,0.34267,-0.0003579,-30.81
> view matrix models
> #2,0.20098,-0.79121,0.57758,259.55,0.38009,-0.48043,-0.79039,57.385,0.90285,0.37839,0.20417,-71.279
> view matrix models
> #2,0.19551,-0.7429,0.64021,238.78,0.35314,-0.55569,-0.75267,69.739,0.91491,0.37324,0.1537,-62.59
> view matrix models
> #2,0.1857,0.18399,0.96523,-4.1698,0.54586,-0.83611,0.054355,-72.889,0.81704,0.51679,-0.2557,9.5347
> view matrix models
> #2,-0.28082,0.088082,0.95571,106.24,0.62353,-0.74027,0.25144,-145.59,0.72963,0.66652,0.15296,-83.824
> view matrix models
> #2,-0.33285,0.4641,0.82086,69.837,0.48696,-0.66085,0.57109,-198.14,0.80752,0.58982,-0.0060369,-52.363
> view matrix models
> #2,-0.32616,0.71919,0.6135,60.04,0.36109,-0.505,0.78396,-246.45,0.87363,0.47722,-0.094982,-25.546
> view matrix models
> #2,-0.31441,0.79049,0.52562,61.334,0.34822,-0.41906,0.83853,-271.52,0.88311,0.44667,-0.14351,-11.801
> view matrix models
> #2,-0.28806,0.89742,0.33414,73.429,0.31721,-0.23981,0.91753,-316.1,0.90355,0.3703,-0.21559,13.423
> view matrix models
> #2,-0.28869,0.89575,0.33806,73.099,0.31892,-0.24297,0.91611,-315.53,0.90275,0.37229,-0.21553,13.177
> view matrix models
> #2,-0.28436,0.90103,0.32755,73.322,0.31097,-0.2365,0.92053,-316.13,0.90689,0.36361,-0.21294,13.554
> view matrix models
> #2,-0.20107,0.97906,0.031801,100.76,0.19316,0.0078007,0.98114,-353,0.96034,0.20342,-0.19068,30.015
> view matrix models
> #2,-0.15437,0.97679,-0.14851,127.97,0.16496,0.17368,0.97089,-377.82,0.97414,0.12538,-0.18795,42.001
> view matrix models
> #2,-0.063535,0.93649,-0.3449,157.27,0.11547,0.35018,0.92954,-394.43,0.99128,0.019233,-0.13038,47.939
> view matrix models
> #2,0.068144,0.82279,-0.56425,197.54,0.076686,0.55957,0.82522,-407.02,0.99472,-0.099504,-0.024964,49.471
> view matrix models
> #2,0.069052,0.81724,-0.57215,200.01,0.078406,0.5673,0.81977,-407.77,0.99453,-0.10147,-0.024903,49.879
> view matrix models
> #2,0.074768,0.81598,-0.57322,199.37,0.076855,0.5684,0.81915,-407.56,0.99423,-0.1053,-0.020214,49.751
> view matrix models
> #2,0.47107,0.31522,-0.82385,270.19,0.10124,0.90848,0.40549,-396.39,0.87627,-0.27442,0.39604,22.819
> view matrix models
> #2,0.45041,0.35291,-0.82011,266.1,0.092679,0.89512,0.43609,-398.21,0.888,-0.27243,0.37047,25.244
> view matrix models
> #2,0.33927,0.58997,-0.73268,224.03,0.033823,0.77073,0.63627,-402.37,0.94008,-0.24065,0.24153,34.603
> view matrix models
> #2,0.31653,0.60668,-0.72921,224.47,0.035705,0.76057,0.64827,-403.14,0.94791,-0.23123,0.21908,35.715
> view matrix models
> #2,0.45818,0.4989,-0.73564,219.44,0.047854,0.81258,0.58088,-402.23,0.88757,-0.30135,0.34843,35.325
> view matrix models
> #2,0.62362,0.17481,-0.76193,255.85,0.148,0.93065,0.33466,-395.66,0.76759,-0.32147,0.5545,21.477
> view matrix models
> #2,0.69057,-0.0076286,-0.72323,270.78,0.21824,0.95553,0.19831,-386.99,0.68955,-0.29479,0.66153,10.086
> view matrix models
> #2,0.6793,0.014844,-0.73371,270.66,0.20976,0.95416,0.21351,-388.1,0.70324,-0.29894,0.64505,11.527
> view matrix models
> #2,0.68853,0.0086471,-0.72515,268.39,0.21617,0.95203,0.2166,-389.53,0.69224,-0.30589,0.65363,13.296
> view matrix models
> #2,0.68102,-0.49325,-0.54122,331.02,0.54961,0.8327,-0.067317,-374.22,0.48388,-0.25162,0.83818,6.2615
> view matrix models
> #2,0.67966,-0.47991,-0.55475,331.37,0.53984,0.83928,-0.064653,-374.15,0.49661,-0.25553,0.8295,6.2922
> view matrix models
> #2,0.68607,-0.43172,-0.58561,326.88,0.51287,0.85788,-0.031583,-379.13,0.51602,-0.27867,0.80998,10.931
> view matrix models
> #2,0.69096,-0.41974,-0.58856,324.19,0.49961,0.8657,-0.030855,-378.25,0.52246,-0.27273,0.80787,8.9512
> view matrix models
> #2,0.69445,-0.42278,-0.58223,322.85,0.49445,0.86825,-0.040709,-375.79,0.52273,-0.25962,0.812,5.527
> view matrix models
> #2,0.68618,-0.42574,-0.58984,326.53,0.49564,0.86713,-0.049289,-374.1,0.53245,-0.25853,0.80602,4.6311
> view matrix models
> #2,0.48054,-0.49098,-0.72665,405.98,0.49345,0.83635,-0.23878,-330.11,0.72498,-0.24382,0.64418,-3.2126
> view matrix models
> #2,0.47974,-0.49475,-0.72462,406.46,0.49525,0.83441,-0.24184,-329.47,0.72428,-0.24284,0.64533,-3.4971
> view matrix models
> #2,0.48722,-0.56067,-0.66953,406.92,0.50859,0.80542,-0.30436,-313.99,0.7099,-0.19222,0.67757,-16.972
> view matrix models
> #2,0.49062,-0.54632,-0.67884,405.32,0.50121,0.8142,-0.29302,-316.53,0.71279,-0.19648,0.67329,-15.853
> view matrix models
> #2,0.47331,-0.53519,-0.69968,410.62,0.51214,0.81343,-0.27575,-321.91,0.71672,-0.22782,0.6591,-7.6963
> view matrix models
> #2,0.47446,-0.53477,-0.69923,410.23,0.50164,0.81698,-0.28444,-318.86,0.72336,-0.21581,0.65588,-10.675
> view matrix models
> #2,0.32383,-0.64621,-0.69105,459.31,0.55819,0.72023,-0.41193,-285.63,0.76391,-0.25234,0.59394,0.90963
> view matrix models
> #2,0.26002,-0.68239,-0.68318,477.07,0.57231,0.67877,-0.46015,-270.72,0.77772,-0.27134,0.56703,7.2838
> view matrix models
> #2,0.27919,-0.65717,-0.70013,471.84,0.56417,0.70227,-0.4342,-278.87,0.77702,-0.27377,0.56682,7.9332
> view matrix models
> #2,0.32419,-0.62573,-0.70948,458.91,0.5521,0.73416,-0.39522,-290.49,0.76817,-0.26358,0.58348,4.3516
> view matrix models
> #2,0.45415,-0.24408,-0.85684,388.84,0.40002,0.91521,-0.048689,-365.16,0.79608,-0.32064,0.51328,24.004
> view matrix models
> #2,0.45748,-0.24283,-0.85542,387.67,0.36582,0.92821,-0.067855,-357.3,0.81049,-0.28188,0.51347,13.649
> view matrix models
> #2,0.46026,-0.24166,-0.85426,386.68,0.33654,0.93791,-0.084006,-350.35,0.82152,-0.24883,0.51301,5.1819
> view matrix models
> #2,0.47478,-0.23353,-0.84855,381.16,0.1712,0.97024,-0.17123,-307.49,0.86329,-0.063974,0.50064,-36.381
> view matrix models
> #2,0.48072,-0.22907,-0.84642,378.73,0.096757,0.97324,-0.20844,-286.35,0.87152,0.018302,0.49002,-51.871
> view matrix models
> #2,0.49428,-0.21556,-0.84215,372.64,-0.093301,0.95002,-0.29793,-227.47,0.86428,0.22583,0.44946,-82.817
> view matrix models
> #2,0.50081,-0.24339,-0.83063,374.52,-0.079383,0.94269,-0.32408,-223.54,0.86191,0.22824,0.45279,-83.489
> view matrix models
> #2,0.5043,-0.24128,-0.82913,373.14,-0.079675,0.94307,-0.3229,-223.79,0.85984,0.2289,0.45637,-83.929
> view matrix models
> #2,0.54539,-0.26063,-0.79663,362.54,-0.061685,0.93537,-0.34825,-220.73,0.83591,0.23908,0.49407,-88.776
> view matrix models
> #2,0.57353,-0.28218,-0.76904,355.84,-0.043592,0.92695,-0.37264,-217.74,0.81802,0.24724,0.51934,-91.933
> view matrix models
> #2,0.65684,-0.31052,-0.68712,329.06,-0.0031247,0.91014,-0.41429,-214,0.75403,0.27427,0.59684,-100.24
> view matrix models
> #2,0.51418,-0.27966,-0.81081,375.06,-0.055023,0.93265,-0.35657,-219.83,0.85591,0.22796,0.46416,-84.534
> view matrix models
> #2,0.51067,-0.28175,-0.8123,376.44,-0.054718,0.93222,-0.35774,-219.58,0.85803,0.22714,0.46064,-84.084
> view matrix models
> #2,0.50455,-0.27659,-0.81788,377.73,-0.058412,0.93419,-0.35196,-220.4,0.8614,0.22536,0.45519,-83.306
> view matrix models
> #2,0.57061,-0.2286,-0.78876,349.89,0.0067541,0.96175,-0.27386,-253.8,0.82119,0.15094,0.55033,-79.95
> view matrix models
> #2,0.61649,-0.20981,-0.75889,331.47,0.056575,0.97316,-0.22309,-275.69,0.78533,0.094598,0.61181,-74.274
> view matrix models
> #2,0.63145,-0.20423,-0.74804,325.35,0.072465,0.97601,-0.2053,-282.83,0.77203,0.075431,0.6311,-71.807
> view matrix models
> #2,0.62502,-0.19401,-0.75612,326.2,0.056518,0.97733,-0.20405,-280.27,0.77856,0.0848,0.62181,-73.047
> view matrix models
> #2,0.68328,-0.4973,-0.53462,330.06,0.49017,0.8551,-0.16894,-346.98,0.54117,-0.14662,0.82803,-23.191
> view matrix models
> #2,0.6801,-0.48659,-0.54835,331.31,0.47325,0.86265,-0.17852,-343.29,0.5599,-0.1381,0.81697,-26.264
> view matrix models
> #2,0.69103,-0.30194,-0.65674,314.78,0.27223,0.95039,-0.1505,-327.2,0.6696,-0.074779,0.73895,-44.24
> view matrix models
> #2,0.69463,-0.28534,-0.66036,311.57,0.25904,0.9556,-0.14044,-327.67,0.67111,-0.073507,0.7377,-44.532
> view matrix models
> #2,0.60634,0.27147,-0.74743,237.5,-0.2245,0.96013,0.1666,-296.31,0.76286,0.066786,0.64311,-70.741
> view matrix models
> #2,0.6255,0.27342,-0.73074,230.11,-0.23986,0.95862,0.15336,-290.43,0.74244,0.079344,0.6652,-73.634
> view matrix models
> #2,0.7426,0.29548,-0.60102,177.53,-0.33379,0.9413,0.050364,-248.54,0.58063,0.16321,0.79764,-85.057
> view matrix models
> #2,0.72714,0.2913,-0.62162,185.41,-0.32136,0.9446,0.066733,-254.82,0.60663,0.15124,0.78047,-84.329
> view matrix models
> #2,0.72039,0.28962,-0.6302,188.74,-0.31595,0.94592,0.073548,-257.47,0.61742,0.14613,0.77294,-83.92
> view matrix models
> #2,0.44381,0.26732,-0.85532,291.01,-0.094457,0.96311,0.25199,-338.88,0.89113,-0.031045,0.45268,-38.64
> view matrix models
> #2,0.44615,0.26779,-0.85395,290.19,-0.091704,0.96284,0.25402,-339.76,0.89025,-0.035023,0.45413,-37.983
> view matrix models
> #2,0.52862,0.11902,-0.84047,300.59,0.077031,0.97931,0.18713,-362.2,0.84536,-0.16366,0.50852,-15.09
> view matrix models
> #2,0.61713,0.086031,-0.78214,278.39,0.19229,0.94738,0.25592,-391.83,0.763,-0.30833,0.56812,17.103
> view matrix models
> #2,0.64845,0.03745,-0.76034,277.48,0.26126,0.92718,0.26848,-403.67,0.71502,-0.37274,0.59144,34.251
> view matrix models
> #2,0.70362,-0.0059616,-0.71055,265.43,0.33874,0.88184,0.32804,-421.59,0.62464,-0.47151,0.62251,64.72
> view matrix models
> #2,0.78315,-0.46997,-0.40719,280.23,0.57733,0.30625,0.7569,-440.6,-0.23102,-0.82785,0.51117,320.96
> view matrix models
> #2,0.75112,-0.52671,-0.39798,295.62,0.57716,0.23128,0.7832,-431.2,-0.32047,-0.81798,0.47771,342.91
> view matrix models
> #2,0.4455,-0.87365,-0.19561,381.86,0.09072,-0.17331,0.98068,-297.94,-0.89067,-0.45464,0.0020466,476.38
> view matrix models
> #2,0.13009,-0.935,-0.32991,481.19,-0.30823,-0.35439,0.88284,-166.45,-0.94237,-0.013163,-0.3343,467.15
> view matrix models
> #2,0.14811,-0.84459,-0.51452,496.74,-0.33859,-0.53212,0.77602,-104.83,-0.9292,0.059277,-0.36479,456.56
> view matrix models
> #2,0.151,-0.83293,-0.53238,497.46,-0.34065,-0.54942,0.76295,-98.472,-0.92798,0.066148,-0.3667,455.37
> view matrix models
> #2,0.15362,-0.8035,-0.57514,499.71,-0.35029,-0.58853,0.72865,-82.199,-0.92396,0.089536,-0.37186,451.07
> view matrix models
> #2,0.19392,-0.79119,-0.58001,490.52,-0.42974,-0.59999,0.67478,-53.982,-0.88189,0.1184,-0.45636,454.1
> view matrix models
> #2,0.17057,-0.79562,-0.58129,496.13,-0.38922,-0.59636,0.70204,-67.901,-0.90522,0.1065,-0.41139,451.99
> view matrix models
> #2,0.13256,-0.81971,-0.55722,503.37,-0.41465,-0.55649,0.71999,-74.32,-0.90027,0.13561,-0.41367,445.83
> view matrix models
> #2,0.072457,-0.85172,-0.51897,513.58,-0.44989,-0.4923,0.74514,-85.012,-0.89014,0.17949,-0.41885,436.37
> view matrix models
> #2,-0.59976,-0.79642,-0.077535,544.74,-0.50589,0.30232,0.80788,-241.3,-0.61997,0.52376,-0.58422,350.13
> view matrix models
> #2,-0.82406,-0.51085,0.24487,468.43,-0.26225,0.72714,0.63442,-336.49,-0.50214,0.45858,-0.73318,369.67
> view matrix models
> #2,-0.81902,-0.45302,0.3521,434.93,-0.19187,0.79459,0.57603,-351.6,-0.54073,0.40422,-0.73771,388.58
> view matrix models
> #2,-0.81375,-0.36658,0.45102,397.48,-0.11475,0.86207,0.49363,-363.24,-0.56977,0.34994,-0.74358,405.9
> view matrix models
> #2,-0.80844,-0.33598,0.48327,384.1,-0.089216,0.88154,0.46361,-365.99,-0.58178,0.33168,-0.74264,411.58
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.80844,-0.33598,0.48327,384.03,-0.089216,0.88154,0.46361,-378.07,-0.58178,0.33168,-0.74264,406.89
> view matrix models
> #2,-0.80844,-0.33598,0.48327,375.42,-0.089216,0.88154,0.46361,-448.14,-0.58178,0.33168,-0.74264,359.46
> view matrix models
> #2,-0.80844,-0.33598,0.48327,378.22,-0.089216,0.88154,0.46361,-463.28,-0.58178,0.33168,-0.74264,360.71
> view matrix models
> #2,-0.80844,-0.33598,0.48327,378.31,-0.089216,0.88154,0.46361,-463.22,-0.58178,0.33168,-0.74264,361.41
> view matrix models
> #2,-0.80844,-0.33598,0.48327,381.26,-0.089216,0.88154,0.46361,-466.93,-0.58178,0.33168,-0.74264,378.68
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.7201,-0.040803,-0.69267,540.05,-0.36705,0.86956,0.33036,-384.66,0.58884,0.49213,-0.64114,101.85
> view matrix models
> #2,-0.72273,-0.058486,-0.68865,543.2,-0.31939,0.9119,0.25775,-387.67,0.61291,0.40623,-0.67773,121.19
> view matrix models
> #2,0.26493,-0.054069,-0.96275,406.47,-0.37201,0.9154,-0.15378,-296.59,0.88962,0.39889,0.22241,-109.23
> view matrix models
> #2,0.2636,-0.057949,-0.96289,407.51,-0.35204,0.92357,-0.15196,-302.39,0.8981,0.37903,0.22305,-107.13
> view matrix models
> #2,0.24657,-0.093541,-0.9646,418.06,-0.15218,0.97925,-0.13386,-355.31,0.9571,0.17979,0.22722,-80.549
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.24657,-0.093541,-0.9646,417.63,-0.15218,0.97925,-0.13386,-352.35,0.9571,0.17979,0.22722,-80.909
> view matrix models
> #2,0.24657,-0.093541,-0.9646,411.71,-0.15218,0.97925,-0.13386,-252.17,0.9571,0.17979,0.22722,-33.023
> view matrix models
> #2,0.24657,-0.093541,-0.9646,411.71,-0.15218,0.97925,-0.13386,-252.36,0.9571,0.17979,0.22722,-33.187
> view matrix models
> #2,0.24657,-0.093541,-0.9646,414.18,-0.15218,0.97925,-0.13386,-251.36,0.9571,0.17979,0.22722,-37.992
> view matrix models
> #2,0.24657,-0.093541,-0.9646,419.35,-0.15218,0.97925,-0.13386,-250.35,0.9571,0.17979,0.22722,-42.396
> view matrix models
> #2,0.24657,-0.093541,-0.9646,418.81,-0.15218,0.97925,-0.13386,-249.21,0.9571,0.17979,0.22722,-42.456
> view matrix models
> #2,0.24657,-0.093541,-0.9646,396.49,-0.15218,0.97925,-0.13386,-205.18,0.9571,0.17979,0.22722,-33.601
> view matrix models
> #2,0.24657,-0.093541,-0.9646,373.73,-0.15218,0.97925,-0.13386,-159.63,0.9571,0.17979,0.22722,-26.753
> view matrix models
> #2,0.24657,-0.093541,-0.9646,373.43,-0.15218,0.97925,-0.13386,-158.88,0.9571,0.17979,0.22722,-27.13
> view matrix models
> #2,0.24657,-0.093541,-0.9646,368.43,-0.15218,0.97925,-0.13386,-149.15,0.9571,0.17979,0.22722,-24.753
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.2096,-0.086768,-0.97393,376.09,-0.039741,0.99448,-0.09715,-181.05,0.97698,0.059068,0.20499,-0.67959
> view matrix models
> #2,0.26935,0.23209,-0.93466,294.74,-0.12101,0.97099,0.20624,-221.01,0.95541,0.057547,0.28962,-13.016
> view matrix models
> #2,0.26995,0.31978,-0.90822,272.32,-0.14985,0.9457,0.28843,-226.83,0.95114,0.058237,0.30322,-15.024
> view matrix models
> #2,0.25808,0.32524,-0.90973,273.84,-0.15555,0.94334,0.29312,-226.2,0.95352,0.065862,0.29405,-15.148
> view matrix models
> #2,0.3059,0.31775,-0.89747,263.65,-0.29414,0.92809,0.22833,-183.69,0.90549,0.19413,0.37737,-47.384
> view matrix models
> #2,0.3578,0.31696,-0.87836,250.02,-0.43608,0.88848,0.14297,-131.71,0.82572,0.33188,0.45612,-74.445
> view matrix models
> #2,0.38384,0.31969,-0.86629,242.08,-0.50372,0.85877,0.093719,-103.13,0.77391,0.4004,0.49067,-84.65
> view matrix models
> #2,0.33751,0.31632,-0.88658,255.68,-0.38168,0.90694,0.17829,-152.79,0.86047,0.27822,0.42683,-64.887
> view matrix models
> #2,0.32559,0.31652,-0.89096,258.81,-0.34905,0.91598,0.19786,-164.71,0.87872,0.24657,0.40872,-58.651
> view matrix models
> #2,0.28753,0.31988,-0.90278,267.83,-0.24174,0.9363,0.25477,-200.62,0.92676,0.14499,0.34654,-35.804
> view matrix models
> #2,0.325,0.31655,-0.89116,258.96,-0.34744,0.91639,0.1988,-165.29,0.87958,0.24501,0.40781,-58.332
> view matrix models
> #2,0.32373,0.31659,-0.89161,259.28,-0.34391,0.91727,0.20084,-166.54,0.88143,0.24162,0.40582,-57.636
> view matrix models
> #2,0.34403,0.31639,-0.88405,253.91,-0.39933,0.90143,0.16721,-146.12,0.84981,0.2955,0.43647,-68.107
> view matrix models
> #2,0.34849,0.31651,-0.88225,252.67,-0.41131,0.89743,0.15949,-141.5,0.84225,0.3073,0.44293,-70.229
> view matrix models
> #2,0.32845,-0.63558,-0.69868,405.4,-0.057849,0.7248,-0.68653,-8.1772,0.94275,0.26591,0.20129,-33.602
> view matrix models
> #2,0.052193,-0.99636,0.067463,376.85,0.12388,-0.060574,-0.99045,169.93,0.99092,0.060052,0.12026,13.249
> view matrix models
> #2,-0.14753,-0.84055,0.52125,294.99,0.093712,-0.53653,-0.83866,238.26,0.98461,-0.074878,0.15792,33.253
> view matrix models
> #2,-0.14684,-0.84049,0.52155,294.78,0.091413,-0.53654,-0.83891,238.75,0.98493,-0.075509,0.15562,33.771
> view matrix models
> #2,-0.15971,-0.84177,0.51566,298.68,0.13482,-0.53607,-0.83334,229.19,0.97791,-0.063574,0.1991,24.174
> view matrix models
> #2,-0.37398,-0.15512,0.91437,127.25,-0.1003,-0.97337,-0.20615,235.17,0.922,-0.16881,0.34846,25.798
> view matrix models
> #2,-0.36316,0.70305,0.61142,18.255,-0.4655,-0.70536,0.53458,106.44,0.80711,-0.090483,0.58343,-13.922
> view matrix models
> #2,-0.28549,0.7025,0.65191,-4.6299,-0.67553,-0.63001,0.38307,162.28,0.67982,-0.33102,0.65442,43.323
> view matrix models
> #2,-0.27559,0.72471,0.63154,-6.8183,-0.68471,-0.60912,0.40018,156.59,0.6747,-0.32214,0.66408,40.664
> view matrix models
> #2,-0.33603,0.72696,0.59884,10.873,-0.52399,-0.67262,0.52251,113.73,0.78264,-0.1382,0.60694,-4.5855
> view matrix models
> #2,0.006546,0.996,-0.089118,28.99,-0.65005,0.071958,0.75647,-53.292,0.75986,0.05298,0.64793,-45.531
> view matrix models
> #2,0.38136,0.48812,-0.78505,193.67,-0.43747,0.84341,0.3119,-156.18,0.81436,0.22449,0.53518,-67.041
> view matrix models
> #2,0.43263,-0.27636,-0.85817,347.06,-0.088815,0.93417,-0.34561,-110.58,0.89719,0.22574,0.3796,-52.378
> view matrix models
> #2,0.39402,-0.56249,-0.72688,384.14,0.054447,0.80376,-0.59246,-63.832,0.91749,0.19386,0.34732,-43.683
> view matrix models
> #2,0.27725,-0.82618,-0.49047,411.05,0.18978,0.54751,-0.81499,4.1039,0.94187,0.13288,0.30859,-28.83
> view matrix models
> #2,0.26592,-0.84297,-0.46764,411.97,0.1989,0.52264,-0.82903,9.9721,0.94325,0.12744,0.30665,-27.653
> view matrix models
> #2,0.26428,-0.84531,-0.46434,412.09,0.20017,0.51905,-0.83098,10.813,0.94345,0.12666,0.30638,-27.485
> view matrix models
> #2,0.26057,-0.84543,-0.46621,413.19,0.1987,0.51951,-0.83104,11.017,0.94478,0.12391,0.30336,-26.609
> view matrix models
> #2,0.4122,-0.35548,-0.83888,362.57,-0.054749,0.90942,-0.41227,-99.102,0.90945,0.21586,0.3554,-48.018
> view matrix models
> #2,0.41272,-0.3514,-0.84034,361.96,-0.056649,0.9109,-0.40873,-99.726,0.9091,0.21629,0.35604,-48.16
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.41272,-0.3514,-0.84034,411.5,-0.056649,0.9109,-0.40873,-216.91,0.9091,0.21629,0.35604,-72.692
> view matrix models
> #2,0.41272,-0.3514,-0.84034,411.29,-0.056649,0.9109,-0.40873,-216.44,0.9091,0.21629,0.35604,-72.923
> view matrix models
> #2,0.41272,-0.3514,-0.84034,411.18,-0.056649,0.9109,-0.40873,-216.2,0.9091,0.21629,0.35604,-72.91
> view matrix models
> #2,0.41272,-0.3514,-0.84034,411.08,-0.056649,0.9109,-0.40873,-215.97,0.9091,0.21629,0.35604,-72.898
> view matrix models
> #2,0.41272,-0.3514,-0.84034,409.34,-0.056649,0.9109,-0.40873,-203.69,0.9091,0.21629,0.35604,-66.977
> view matrix models
> #2,0.41272,-0.3514,-0.84034,408.63,-0.056649,0.9109,-0.40873,-198.33,0.9091,0.21629,0.35604,-61.651
> volume #1 level 0.4185
> volume #1 level 1.028
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.3885,-0.45487,-0.80135,425.69,-0.030119,0.86293,-0.50442,-175.13,0.92096,0.22011,0.32155,-57.836
> view matrix models
> #2,0.37496,-0.53366,-0.75803,435.04,-0.0069014,0.81606,-0.57793,-155.9,0.92702,0.22193,0.3023,-55.541
> view matrix models
> #2,0.36109,-0.59771,-0.71579,441.8,0.011768,0.77043,-0.63741,-138.82,0.93246,0.22174,0.28523,-53.166
> view matrix models
> #2,0.32974,-0.69659,-0.63721,451.49,0.03804,0.68422,-0.72828,-109.07,0.94331,0.2159,0.25211,-47.55
> view matrix models
> #2,0.31236,-0.73611,-0.60048,455.24,0.047105,0.64333,-0.76414,-95.752,0.9488,0.2104,0.23562,-44.265
> view matrix models
> #2,0.28731,-0.7714,-0.5678,460.45,0.051969,0.60448,-0.79493,-83.02,0.95643,0.19888,0.21376,-39.157
> view matrix models
> #2,0.27622,-0.78294,-0.55741,462.77,0.05251,0.5914,-0.80466,-78.649,0.95966,0.19299,0.20447,-36.792
> view matrix models
> #2,0.28219,-0.77734,-0.56224,461.49,0.052528,0.5977,-0.8,-80.803,0.95792,0.19622,0.2095,-38.081
> view matrix models
> #2,0.19605,-0.71927,-0.6665,487.46,0.080163,0.68917,-0.72015,-119.76,0.97731,0.087757,0.19277,-17.393
> view matrix models
> #2,0.15922,-0.67381,-0.72155,496.63,0.099852,0.73812,-0.66724,-143.58,0.98218,0.034193,0.18481,-6.3274
> view matrix models
> #2,0.16039,-0.6708,-0.72409,496.32,0.10066,0.74088,-0.66405,-144.9,0.98191,0.033619,0.18635,-6.47
> view matrix models
> #2,0.24516,-0.76127,-0.60031,473.05,0.062962,0.6304,-0.77372,-94.389,0.96744,0.15189,0.20248,-29.897
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.24516,-0.76127,-0.60031,472.23,0.062962,0.6304,-0.77372,-113.15,0.96744,0.15189,0.20248,-25.907
> ui tool show "Side View"
> view matrix models
> #2,0.24516,-0.76127,-0.60031,477.66,0.062962,0.6304,-0.77372,-102.01,0.96744,0.15189,0.20248,-31.598
> view matrix models
> #2,0.24516,-0.76127,-0.60031,478.07,0.062962,0.6304,-0.77372,-101.16,0.96744,0.15189,0.20248,-32.005
> view matrix models
> #2,0.24516,-0.76127,-0.60031,479.39,0.062962,0.6304,-0.77372,-98.757,0.96744,0.15189,0.20248,-34.518
> view matrix models
> #2,0.24516,-0.76127,-0.60031,488.47,0.062962,0.6304,-0.77372,-5.2878,0.96744,0.15189,0.20248,-34.741
> hide sel surfaces
> show sel cartoons
> hide sel cartoons
> hide sel atoms
> show sel cartoons
> ui mousemode right "move picked models"
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.24516,-0.76127,-0.60031,485.85,0.062962,0.6304,-0.77372,-25.94,0.96744,0.15189,0.20248,-26.1
> view matrix models
> #2,0.24516,-0.76127,-0.60031,483.41,0.062962,0.6304,-0.77372,-92.041,0.96744,0.15189,0.20248,-31.569
> view matrix models
> #2,0.24516,-0.76127,-0.60031,483.02,0.062962,0.6304,-0.77372,-93.11,0.96744,0.15189,0.20248,-29.691
> view matrix models
> #2,0.24516,-0.76127,-0.60031,483.14,0.062962,0.6304,-0.77372,-91.711,0.96744,0.15189,0.20248,-29.988
> view matrix models
> #2,0.24516,-0.76127,-0.60031,481.92,0.062962,0.6304,-0.77372,-94.482,0.96744,0.15189,0.20248,-23.983
> view matrix models
> #2,0.24516,-0.76127,-0.60031,482.81,0.062962,0.6304,-0.77372,-91.349,0.96744,0.15189,0.20248,-28.008
> view matrix models
> #2,0.24516,-0.76127,-0.60031,482.95,0.062962,0.6304,-0.77372,-90.79,0.96744,0.15189,0.20248,-28.648
> view matrix models
> #2,0.13101,-0.71122,-0.69066,513.05,0.035758,0.6996,-0.71364,-110.86,0.99074,0.068801,0.11709,-0.12373
> view matrix models
> #2,0.38176,-0.74849,-0.54223,442.8,0.076624,0.61028,-0.78847,-86.593,0.92108,0.25946,0.29033,-57.976
> view matrix models
> #2,0.38561,-0.7292,-0.5653,442.91,0.059598,0.63109,-0.77342,-90.339,0.92073,0.26455,0.28681,-58.196
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.39062,-0.71511,-0.57968,442.08,0.057921,0.64755,-0.75982,-95.896,0.91873,0.26322,0.29437,-59.052
> view matrix models
> #2,0.13057,-0.38222,-0.9148,493.97,0.03459,0.92389,-0.38108,-219.92,0.99084,0.018114,0.13385,6.3328
> view matrix models
> #2,0.47972,-0.32476,-0.81511,396.21,0.090339,0.94232,-0.32228,-245.82,0.87276,0.080968,0.48139,-52.087
> view matrix models
> #2,0.51762,-0.18168,-0.8361,365.46,-0.35548,0.8432,-0.4033,-125.19,0.77827,0.50597,0.37187,-94.433
> view matrix models
> #2,0.44983,-0.039259,-0.89225,362.04,-0.39802,0.88553,-0.23963,-157.67,0.79952,0.46293,0.38271,-92.332
> view matrix models
> #2,0.43722,0.076764,-0.89607,342.79,-0.41499,0.90116,-0.12529,-180.1,0.79789,0.42664,0.42586,-93.557
> view matrix models
> #2,0.47272,0.26654,-0.83994,288.18,-0.43688,0.89866,0.039296,-208.05,0.76529,0.34838,0.54126,-95.059
> view matrix models
> #2,0.56635,0.30005,-0.7676,249.42,-0.42137,0.90586,0.0432,-213.19,0.7083,0.29898,0.63947,-94.059
> view matrix models
> #2,0.56367,0.23588,-0.7916,267.1,-0.23271,0.96489,0.12181,-276.32,0.79254,0.11555,0.59877,-66.672
> ui mousemode right rotate
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.073826,0.060183,-0.99545,435.31,-0.12595,0.99075,0.050558,-287.65,0.98929,0.12165,0.080723,-2.8528
> view matrix models
> #2,0.1603,-0.29624,-0.94156,476.96,0.043921,0.9551,-0.29302,-245.19,0.98609,0.0056179,0.16611,3.262
> ui mousemode right rotate
> fitmap #2 inMap #1
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P698_J35_002_volume_map_sharp.mrc (#1) using 13508 atoms
average map value = 1.823, steps = 64
shifted from previous position = 8.91
rotated from previous position = 13.1 degrees
atoms outside contour = 4433, contour level = 1.0276
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P698_J35_002_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.36635641 -0.24119906 -0.89866900 394.42137289
-0.03200642 0.96197963 -0.27123928 107.61679538
0.92992395 0.12813343 0.34470749 -39.72189616
Axis 0.21205428 -0.97092502 0.11107467
Axis point 235.94465711 0.00000000 278.49329882
Rotation angle (degrees) 70.33489726
Shift along axis -25.26119614
> volume #1 level 1.463
> ui mousemode right select
> select clear
> close
> open C:/Users/asus/Desktop/cryosparc_P524_J204_map_sharp.mrc
Opened cryosparc_P524_J204_map_sharp.mrc as #1, grid size 360,360,360, pixel
1.08, shown at level 0.157, step 2, values float32
> volume #1 level 0.4417
> select #1
2 models selected
> transparency sel 50
> transparency #1.1 30
> open C:/Users/asus/Desktop/20211214_prc2_P524_J153_dock_C36_complex-
> coot-0_real_space_refined.pdb
Chain information for 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
M | No description available
N | No description available
P | No description available
Q | No description available
Z | No description available
> select clear
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> hide sel atoms
> show sel cartoons
> select clear
> fitmap #2 inMap #1
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map cryosparc_P524_J204_map_sharp.mrc
(#1) using 13508 atoms
average map value = 0.9221, steps = 48
shifted from previous position = 0.232
rotated from previous position = 0.395 degrees
atoms outside contour = 3543, contour level = 0.44174
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P524_J204_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.99999229 0.00039543 -0.00390582 0.82718211
-0.00037325 0.99998382 0.00567604 -1.24758890
0.00390800 -0.00567454 0.99997626 0.35590097
Axis -0.82241407 -0.56615644 -0.05569540
Axis point 0.00000000 61.86246847 219.35498610
Rotation angle (degrees) 0.39538783
Shift along axis 0.00622223
> select #1
2 models selected
> lighting soft
> select clear
> volume #1 level 0.4845
> close
> open C:/Users/asus/Desktop/cryosparc_P524_J153_008_volume_map_sharp.mrc
Opened cryosparc_P524_J153_008_volume_map_sharp.mrc as #1, grid size
360,360,360, pixel 1.08, shown at level 0.119, step 2, values float32
> volume #1 level 0.2256
> open C:/Users/asus/Desktop/20211214_prc2_P524_J153_dock_C36_complex-
> coot-0_real_space_refined.pdb
Chain information for 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
M | No description available
N | No description available
P | No description available
Q | No description available
Z | No description available
> select #1
2 models selected
> transparency #1.1 30
> lighting soft
> ~select #1
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> hide sel atoms
> show sel cartoons
> fitmap #2 inMap #1
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P524_J153_008_volume_map_sharp.mrc (#1) using 13508 atoms
average map value = 0.7959, steps = 40
shifted from previous position = 0.00602
rotated from previous position = 0.0214 degrees
atoms outside contour = 538, contour level = 0.22557
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P524_J153_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.99999999 -0.00011460 -0.00001809 0.02870191
0.00011459 0.99999993 -0.00035589 0.05378806
0.00001813 0.00035589 0.99999994 -0.07421812
Axis 0.95075547 -0.04837313 0.30614388
Axis point 0.00000000 210.25969054 151.36161460
Rotation angle (degrees) 0.02144722
Shift along axis 0.00196517
> volume #1 level 0.2644
> select clear
> volume #1 level 0.245
> select #1
2 models selected
> surface dust #1 size 10.8
> select clear
> volume #1 level 0.2936
> select #1
2 models selected
> select clear
> open C:/Users/asus/Desktop/cryosparc_P524_J196_008_volume_map_sharp.mrc
Opened cryosparc_P524_J196_008_volume_map_sharp.mrc as #3, grid size
360,360,360, pixel 1.08, shown at level 0.126, step 2, values float32
> volume #3 level 0.2527
> select #3
2 models selected
> transparency sel 50
> surface dust #3 size 10.8
> hide #!1 models
> select clear
> color #3 #55aaff80 models
> color #3 #bdffd280 models
> color #3 #d0ffdd80 models
> color #3 #dcffe780 models
> color #3 #e4ffed80 models
> lighting soft
> volume #3 level 0.3056
> volume #3 level 0.3267
> volume #3 level 0.4114
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #3 level 0.4643
> volume #3 level 0.4008
> volume #3 level 0.2527
> fitmap #2 inMap #1 search 100 radius 5
Found 93 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (100 of 100).
Average map values and times found:
0.7959 (8), 0.2826 (1), 0.2732 (1), 0.2732 (1), 0.2726 (1), 0.2709 (1), 0.2699
(1), 0.2681 (1), 0.2645 (1), 0.2644 (1), 0.2621 (1), 0.262 (1), 0.2618 (1),
0.261 (1), 0.258 (1), 0.2544 (1), 0.2535 (1), 0.2507 (1), 0.2481 (1), 0.2453
(1), 0.2359 (1), 0.2325 (1), 0.2323 (1), 0.2318 (1), 0.2308 (1), 0.2303 (1),
0.2303 (1), 0.2287 (1), 0.2255 (1), 0.2252 (1), 0.224 (1), 0.2216 (1), 0.2177
(1), 0.217 (1), 0.2161 (1), 0.2154 (1), 0.215 (1), 0.212 (1), 0.2106 (1),
0.2099 (1), 0.2095 (1), 0.2086 (1), 0.2068 (1), 0.2063 (1), 0.206 (1), 0.2055
(1), 0.2051 (1), 0.2034 (1), 0.2034 (1), 0.2033 (1), 0.2021 (1), 0.2014 (1),
0.2007 (1), 0.1996 (1), 0.1986 (1), 0.1974 (1), 0.1972 (1), 0.1967 (1), 0.1952
(1), 0.1952 (1), 0.1951 (1), 0.1943 (1), 0.1933 (1), 0.1919 (1), 0.1912 (1),
0.191 (1), 0.1899 (1), 0.1896 (1), 0.1873 (1), 0.1871 (1), 0.1866 (1), 0.1862
(1), 0.1845 (1), 0.1835 (1), 0.1833 (1), 0.1813 (1), 0.1808 (1), 0.1769 (1),
0.1712 (1), 0.1708 (1), 0.1667 (1), 0.1663 (1), 0.1629 (1), 0.1617 (1), 0.161
(1), 0.1604 (1), 0.1577 (1), 0.1533 (1), 0.1491 (1), 0.1484 (1), 0.1422 (1),
0.1388 (1), 0.1144 (1)
Best fit found:
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P524_J153_008_volume_map_sharp.mrc (#1) using 13508 atoms
average map value = 0.7959, steps = 580
shifted from previous position = 3.14
rotated from previous position = 83.4 degrees
atoms outside contour = 1319, contour level = 0.29358
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P524_J153_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.99999998 -0.00010514 -0.00001229 0.02695409
0.00010513 0.99999988 -0.00035373 0.05787822
0.00001233 0.00035375 0.99999993 -0.07124453
Axis 0.95802693 -0.03334270 0.28473262
Axis point 0.00000000 204.33701280 163.91866491
Rotation angle (degrees) 0.02115574
Shift along axis 0.00360729
Found 93 fits.
> cootmode_wire #0
Unknown command: cootmode_wire #0
> volume #!3 style mesh
> volume #!3 style surface
> hide cartoons
> show atoms
> style stick
Changed 13508 atom styles
> color byhetero
> close
> open C:/Users/asus/Desktop/cryosparc_P698_J51_004_volume_map_sharp.mrc
Opened cryosparc_P698_J51_004_volume_map_sharp.mrc as #1, grid size
440,440,440, pixel 1.08, shown at level 0.0751, step 2, values float32
> volume #1 level 0.1108
> volume #1 level 0.125
> surface dust #1 size 10.8
> volume #1 level 0.1714
> select #1
2 models selected
> transparency #1.1 30
> lighting soft
> open C:/Users/asus/Desktop/20211214_prc2_P524_J153_dock_C36_complex-
> coot-0_real_space_refined.pdb
Chain information for 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
M | No description available
N | No description available
P | No description available
Q | No description available
Z | No description available
Drag select of 1 cryosparc_P698_J51_004_volume_map_sharp.mrc , 3248 atoms, 1
pseudobonds, 19 bonds
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> ui mousemode right "move picked models"
> view matrix models #2,1,0,0,29.49,0,1,0,47.727,0,0,1,32.948
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.6638,-0.74243,-0.090363,256.65,0.52178,0.54627,-0.65524,165.49,0.53583,0.3878,0.74999,-96.139
> view matrix models
> #2,0.15107,-0.90073,0.40726,287.51,0.65244,-0.21865,-0.72561,303.13,0.74263,0.37533,0.55464,-94.796
> view matrix models
> #2,-0.31225,-0.11947,0.94246,118.56,0.45371,-0.89036,0.037454,320.76,0.83465,0.4393,0.33222,-80.851
> view matrix models
> #2,-0.32455,-0.12368,0.93775,122.68,0.44421,-0.89521,0.035671,323.89,0.83507,0.42813,0.34548,-81.389
> view matrix models
> #2,-0.34474,0.74955,0.56509,30.563,-0.0038054,-0.6031,0.79765,202.2,0.93869,0.27284,0.21077,-44.407
> view matrix models
> #2,0.082416,0.92308,-0.37568,101.12,-0.31327,0.38185,0.86951,55.888,0.94608,0.046027,0.32064,-23.488
> ui mousemode right "move picked models"
> view matrix models
> #2,0.082416,0.92308,-0.37568,115.13,-0.31327,0.38185,0.86951,37.23,0.94608,0.046027,0.32064,-22.666
> view matrix models
> #2,0.082416,0.92308,-0.37568,57.679,-0.31327,0.38185,0.86951,-67.291,0.94608,0.046027,0.32064,4.6227
> view matrix models
> #2,0.082416,0.92308,-0.37568,39.296,-0.31327,0.38185,0.86951,-82.305,0.94608,0.046027,0.32064,6.7901
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.22545,0.91938,-0.32236,1.8892,-0.19482,0.36674,0.9097,-110.15,0.95458,-0.14229,0.26179,53.473
> view matrix models
> #2,-0.1959,0.83758,-0.50999,136.18,-0.55134,0.33601,0.76363,-6.5249,0.81096,0.43077,0.39597,-56.993
> view matrix models
> #2,-0.0011465,0.91147,-0.41137,64.73,-0.3836,0.3795,0.84192,-62.829,0.9235,0.15876,0.3492,-16.464
> view matrix models
> #2,-0.19074,0.7101,-0.67777,193.28,-0.79051,0.29823,0.53493,92.258,0.58199,0.63782,0.50446,-74.701
> view matrix models
> #2,-0.48657,0.61512,-0.62039,257.36,-0.7314,0.10156,0.67434,91.49,0.47781,0.78187,0.40048,-62.041
> view matrix models
> #2,-0.41415,0.77047,-0.48461,186.25,-0.51735,0.23879,0.82178,-5.6885,0.74888,0.59106,0.29971,-57.136
> view matrix models
> #2,-0.47179,0.6667,-0.577,235.87,-0.67199,0.15179,0.72484,60.256,0.57083,0.72971,0.3764,-65.033
> ui mousemode right "move picked models"
> view matrix models
> #2,-0.47179,0.6667,-0.577,333.72,-0.67199,0.15179,0.72484,186.44,0.57083,0.72971,0.3764,-89.871
> view matrix models
> #2,-0.47179,0.6667,-0.577,326.35,-0.67199,0.15179,0.72484,197.69,0.57083,0.72971,0.3764,-94.202
> fitmap #2 inMap #1 search 50 radius 5
Found 47 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).
Average map values and times found:
0.2673 (2), 0.2637 (1), 0.237 (1), 0.2362 (1), 0.2306 (1), 0.2288 (1), 0.2257
(1), 0.2227 (2), 0.2226 (1), 0.2208 (2), 0.2201 (1), 0.2197 (1), 0.2165 (1),
0.2158 (1), 0.2144 (1), 0.2143 (1), 0.2125 (1), 0.2123 (1), 0.2116 (1), 0.2112
(1), 0.2103 (1), 0.2102 (1), 0.2096 (1), 0.208 (1), 0.2074 (1), 0.2066 (1),
0.2063 (1), 0.2055 (1), 0.2047 (1), 0.204 (1), 0.2036 (1), 0.2035 (1), 0.2012
(1), 0.199 (1), 0.1982 (1), 0.1977 (1), 0.1968 (1), 0.1912 (1), 0.1898 (1),
0.1883 (1), 0.1851 (1), 0.1835 (1), 0.1828 (1), 0.1643 (1), 0.162 (1), 0.1571
(1), 0.1542 (1)
Best fit found:
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P698_J51_004_volume_map_sharp.mrc (#1) using 13508 atoms
average map value = 0.2673, steps = 464
shifted from previous position = 14.4
rotated from previous position = 60.4 degrees
atoms outside contour = 5168, contour level = 0.17135
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P698_J51_004_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.44614200 0.79370648 0.41350605 83.60191730
0.37238104 0.58477325 -0.72067508 200.34812939
-0.81381182 -0.16754161 -0.55645315 532.51941651
Axis 0.39212751 0.87007046 -0.29868613
Axis point 126.35772807 -0.00000000 285.28831727
Rotation angle (degrees) 135.14637724
Shift along axis 48.04343945
Found 47 fits.
> ui mousemode right select
> select clear
> select #1
2 models selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> select #1
2 models selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> ~select #2
Nothing selected
> ui mousemode right "move picked models"
> view matrix models
> #2,-0.44614,0.79371,0.41351,191.02,0.37238,0.58477,-0.72068,298.11,-0.81381,-0.16754,-0.55645,527.39
> open C:/Users/asus/Desktop/cryosparc_P524_J196_008_volume_map_sharp.mrc
Opened cryosparc_P524_J196_008_volume_map_sharp.mrc as #3, grid size
360,360,360, pixel 1.08, shown at level 0.126, step 2, values float32
> view matrix models #3,1,0,0,-51.412,0,1,0,-64.023,0,0,1,115.19
> volume #3 level 0.2633
> surface dust #1 size 10.8
> surface dust #3 size 10.8
> view matrix models #3,1,0,0,-40.215,0,1,0,-50.089,0,0,1,89.549
> ui mousemode right "rotate selected models"
> select #3
2 models selected
> view matrix models
> #3,0.57757,-0.51674,0.63198,16.259,0.7911,0.5453,-0.27714,-58.324,-0.20141,0.66003,0.72374,54.329
> view matrix models
> #3,-0.1321,0.32364,0.93691,-71.423,0.81933,-0.49633,0.28697,27.339,0.55789,0.80555,-0.19961,62.995
> view matrix models
> #3,-0.9378,-0.34405,0.046468,387.63,0.1994,-0.42421,0.88334,14.236,-0.2842,0.83766,0.46643,86.371
> view matrix models
> #3,-0.094472,-0.44836,-0.88885,431.11,-0.22951,-0.85898,0.45769,264.48,-0.96871,0.24724,-0.021754,427.99
> view matrix models
> #3,-0.15056,0.77832,-0.60955,148.62,0.26746,-0.56151,-0.78305,356.31,-0.95173,-0.28092,-0.12363,547.37
> view matrix models
> #3,-0.65975,0.61038,0.43836,71.972,0.24337,0.72544,-0.64383,83.613,-0.71098,-0.31808,-0.62716,607.83
> view matrix models
> #3,-0.63429,0.53765,0.55553,58.135,0.15106,0.79092,-0.59299,78.515,-0.75819,-0.2922,-0.58289,603.1
> ~select #3
Nothing selected
> select #1
2 models selected
> view matrix models
> #1,0.90095,0.4326,0.033964,-89.678,-0.43138,0.88445,0.17792,87.328,0.046929,-0.17495,0.98346,35.317
> view matrix models
> #1,0.13133,0.93185,0.33825,-101.88,-0.91283,-0.019405,0.40788,365.43,0.38665,-0.36233,0.84807,32.951
> view matrix models
> #1,-0.69938,0.26156,0.66517,178.48,-0.16205,-0.96443,0.20884,465.84,0.69613,0.038269,0.71689,-105.92
> view matrix models
> #1,-0.54309,-0.55118,0.63345,346.49,0.67032,-0.73892,-0.068243,281.45,0.50568,0.38755,0.77077,-158.73
> view matrix models
> #1,0.36751,-0.85416,0.3679,269.39,0.92992,0.34339,-0.13168,-26.711,-0.013853,0.39051,0.92049,-73.133
> view matrix models
> #1,0.11662,-0.84842,0.51632,292.13,0.96135,0.22698,0.15584,-72.073,-0.24941,0.47819,0.8421,-21.538
> view matrix models
> #1,0.87206,-0.4059,0.27341,65.145,0.45049,0.88407,-0.12441,-47.983,-0.19121,0.23166,0.95382,-1.0529
> view matrix models
> #1,0.97596,0.013152,0.21754,-47.742,-0.003657,0.99903,-0.043991,11.227,-0.21791,0.042138,0.97506,46.21
> view matrix models
> #1,0.92424,-0.25171,0.28709,12.473,0.29431,0.94867,-0.11575,-29.323,-0.24322,0.19147,0.95089,21.461
> ~select #1
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #2,-0.56919,0.50385,0.64974,224.27,0.30992,0.86342,-0.39806,191.92,-0.76156,-0.025198,-0.6476,507.7
> ~select #2
Nothing selected
> select #3
2 models selected
> view matrix models
> #3,-0.7113,0.43549,0.55173,93.43,0.11119,0.84477,-0.52345,61.974,-0.69404,-0.31098,-0.6493,607.58
> ~select #3
Nothing selected
> select #1
2 models selected
> view matrix models
> #1,0.20691,-0.79828,0.56563,247.61,0.97188,0.10126,-0.2126,40.887,0.11244,0.59372,0.79678,-123.26
> view matrix models
> #1,-0.586,-0.3479,0.73183,284.51,0.55663,-0.82916,0.051546,302.16,0.58887,0.43756,0.67954,-169.17
> view matrix models
> #1,-0.48429,0.70602,0.51672,54.907,-0.64177,-0.68807,0.33865,480.47,0.59464,-0.16761,0.78633,-48.401
> view matrix models
> #1,0.36144,0.89893,0.24755,-126.51,-0.92074,0.30226,0.24675,326.42,0.14699,-0.31711,0.93693,57.24
> view matrix models
> #1,0.77747,0.46264,0.42604,-158.62,-0.49565,0.8677,-0.037746,156.05,-0.38714,-0.18182,0.90392,156.26
> view matrix models
> #1,0.73686,-0.29694,0.60735,-6.8014,0.44457,0.88964,-0.10441,-52.565,-0.50931,0.34695,0.78755,83.299
> view matrix models
> #1,0.32445,-0.67838,0.6592,169.64,0.89065,0.45378,0.028619,-81.296,-0.31855,0.57783,0.75143,-8.7195
> view matrix models
> #1,-0.52224,-0.57289,0.63172,347.3,0.82519,-0.52644,0.20476,130.99,0.21525,0.62822,0.74766,-144.21
> view matrix models
> #1,-0.81306,0.33925,0.47312,230.34,-0.2257,-0.93279,0.28099,456.34,0.53665,0.12168,0.83499,-116.27
> view matrix models
> #1,-0.29344,0.68039,0.67153,-18.947,-0.7972,-0.56185,0.22091,513.16,0.52761,-0.47052,0.70728,58.85
> view matrix models
> #1,0.40952,0.76048,0.50396,-163.22,-0.90667,0.27794,0.31735,312.78,0.10127,-0.58688,0.80332,164.08
> view matrix models
> #1,0.90771,0.25661,0.33197,-117.27,-0.34209,0.91073,0.2314,47.865,-0.24295,-0.32361,0.91447,154.68
> view matrix models
> #1,0.92213,-0.172,0.34656,-20.068,0.15641,0.98501,0.072694,-49.498,-0.35386,-0.012828,0.93521,100.34
> ui mousemode right "move picked models"
> view matrix models
> #1,0.92213,-0.172,0.34656,-50.917,0.15641,0.98501,0.072694,-52.467,-0.35386,-0.012828,0.93521,49.988
> ~select #1
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #2,-0.56919,0.50385,0.64974,165.15,0.30992,0.86342,-0.39806,191.5,-0.76156,-0.025198,-0.6476,402.79
> view matrix models
> #2,-0.56919,0.50385,0.64974,175.75,0.30992,0.86342,-0.39806,197.06,-0.76156,-0.025198,-0.6476,412.84
> select #3
2 models selected
> view matrix models
> #3,-0.7113,0.43549,0.55173,39.63,0.11119,0.84477,-0.52345,25.014,-0.69404,-0.31098,-0.6493,570.51
> view matrix models
> #3,-0.7113,0.43549,0.55173,47.749,0.11119,0.84477,-0.52345,35.319,-0.69404,-0.31098,-0.6493,568.56
> view matrix models
> #3,-0.7113,0.43549,0.55173,43.566,0.11119,0.84477,-0.52345,25.745,-0.69404,-0.31098,-0.6493,576.37
> open C:/Users/asus/Desktop/cryosparc_P698_J50_005_volume_map_sharp.mrc
Opened cryosparc_P698_J50_005_volume_map_sharp.mrc as #4, grid size
440,440,440, pixel 1.08, shown at level 0.124, step 2, values float32
QWindowsWindow::setGeometry: Unable to set geometry 2560x1446-2560+34 (frame:
2582x1502-2571-11) on QWidgetWindow/"MainWindowClassWindow" on
"\\\\.\DISPLAY2". Resulting geometry: 2560x1346-2560+34 (frame:
2582x1402-2571-11) margins: 11, 45, 11, 11 minimum size: 477x723 MINMAXINFO
maxSize=0,0 maxpos=0,0 mintrack=976,1502 maxtrack=0,0)
> volume #4 level 0.2227
> surface dust #3 size 10.8
> ~select #3
Nothing selected
> select #4
2 models selected
> surface dust #4 size 10.8
> view matrix models #4,1,0,0,75.951,0,1,0,35.585,0,0,1,78.821
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.46698,0.17471,-0.86683,364.25,0.62006,0.6342,0.46186,-127.71,0.63044,-0.75317,0.18783,316.36
> view matrix models
> #4,-0.56262,-0.56315,-0.60525,738.32,0.072877,0.69548,-0.71484,267.03,0.8235,-0.44629,-0.35025,319.05
> view matrix models
> #4,-0.63408,-0.57813,0.51352,492.99,-0.23302,-0.49037,-0.83979,676.22,0.73732,-0.65215,0.17622,267.52
> view matrix models
> #4,-0.89272,-0.39992,-0.20766,680.27,0.44303,-0.6947,-0.56667,502.75,0.082362,-0.59788,0.79734,261.93
> view matrix models
> #4,-0.054401,-0.93232,-0.35751,653.54,0.95573,-0.15231,0.25176,45.483,-0.28918,-0.32799,0.89933,256.53
> view matrix models
> #4,0.50142,-0.82042,0.27474,341.55,0.79329,0.5627,0.23251,-95.979,-0.34536,0.10136,0.93298,150.96
> view matrix models
> #4,0.88162,0.17502,0.4383,-45.353,-0.31332,0.91156,0.26623,69.83,-0.35294,-0.37205,0.8585,292.85
> view matrix models
> #4,-0.28958,0.62172,0.72774,49.723,-0.85343,-0.51196,0.097777,606.68,0.43336,-0.59276,0.67885,205.07
> view matrix models
> #4,-0.45081,0.67446,0.5847,108.6,-0.87448,-0.46509,-0.13774,655.64,0.17904,-0.57341,0.79947,232.03
> view matrix models
> #4,-0.85644,-0.19535,0.47787,455.59,-0.5036,0.51982,-0.69006,444.05,-0.1136,-0.83164,-0.54357,688.21
> view matrix models
> #4,-0.83311,-0.31298,-0.45603,702.69,-0.22617,0.94519,-0.23551,159.76,0.50474,-0.093067,-0.85824,424.69
> view matrix models
> #4,-0.49231,-0.4052,-0.77035,720.02,-0.5779,0.81399,-0.058836,235.53,0.65089,0.41622,-0.6349,205.05
> view matrix models
> #4,-0.51303,0.66261,-0.54566,395.51,0.68837,0.69735,0.1996,-97.919,0.51278,-0.27322,-0.81389,458.78
> view matrix models
> #4,0.74043,0.48923,-0.46088,121.11,0.51427,-0.85387,-0.080184,411.12,-0.43276,-0.17765,-0.88383,676.3
> view matrix models
> #4,0.72066,0.60474,-0.33903,66.98,0.58749,-0.79233,-0.16452,397.82,-0.36812,-0.080619,-0.92628,645.9
> view matrix models
> #4,0.78936,0.56221,-0.24664,39.595,0.57256,-0.81913,-0.034754,377.42,-0.22157,-0.11378,-0.96848,629.56
> transparency #4.1 30
> lighting soft
> volume #4 color #d0fffcb3
> ~select #4
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #2,-0.67496,0.42605,0.60242,220.65,0.16494,0.88291,-0.43963,229.45,-0.71918,-0.19737,-0.6662,441.87
> ui mousemode right "move picked models"
> view matrix models
> #2,-0.67496,0.42605,0.60242,262.96,0.16494,0.88291,-0.43963,168.41,-0.71918,-0.19737,-0.6662,616.84
> fitmap #2 inMap #4 search 50 radius 5
Found 46 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).
Average map values and times found:
0.344 (3), 0.2581 (1), 0.2533 (1), 0.2509 (3), 0.2279 (1), 0.2273 (1), 0.2231
(1), 0.222 (1), 0.2215 (1), 0.2186 (1), 0.2171 (1), 0.2135 (1), 0.2133 (1),
0.2133 (1), 0.2115 (1), 0.2091 (1), 0.207 (1), 0.2062 (1), 0.2059 (1), 0.2055
(1), 0.2013 (1), 0.2012 (1), 0.1991 (1), 0.1981 (1), 0.1944 (1), 0.1927 (1),
0.1902 (1), 0.1898 (1), 0.1873 (1), 0.1861 (1), 0.1854 (1), 0.1844 (1), 0.1833
(1), 0.1824 (1), 0.1812 (1), 0.1806 (1), 0.1796 (1), 0.1692 (1), 0.1669 (1),
0.1644 (1), 0.1642 (1), 0.1582 (1), 0.1534 (1), 0.1455 (1), 0.1329 (1), 0.1315
(1)
Best fit found:
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P698_J50_005_volume_map_sharp.mrc (#4) using 13508 atoms
average map value = 0.344, steps = 564
shifted from previous position = 45.8
rotated from previous position = 71.2 degrees
atoms outside contour = 4345, contour level = 0.22267
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P698_J50_005_volume_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
-0.24688279 0.95780053 0.14719676 69.83299098
-0.37372620 -0.23425681 0.89746996 174.56109576
0.89407914 0.16655859 0.41578916 -47.84262613
Axis -0.43181753 -0.44125310 -0.78665706
Axis point 98.54293927 86.72917639 0.00000000
Rotation angle (degrees) 122.18638882
Shift along axis -69.54499445
Found 46 fits.
> ui mousemode right select
> select clear
> volume #4 level 0.15
> ui mousemode right "move picked models"
> view matrix models
> #2,-0.62551,0.58326,0.51821,216.29,0.1337,0.73449,-0.66531,314.72,-0.76867,-0.34688,-0.53742,418.98
> view matrix models
> #2,-0.62551,0.58326,0.51821,-24.546,0.1337,0.73449,-0.66531,201.75,-0.76867,-0.34688,-0.53742,597.68
> view matrix models
> #2,-0.62551,0.58326,0.51821,-41.231,0.1337,0.73449,-0.66531,94.253,-0.76867,-0.34688,-0.53742,622.69
> view matrix models
> #2,-0.62551,0.58326,0.51821,-16.341,0.1337,0.73449,-0.66531,45.668,-0.76867,-0.34688,-0.53742,595.19
> view matrix models
> #2,-0.62551,0.58326,0.51821,0.25079,0.1337,0.73449,-0.66531,45.047,-0.76867,-0.34688,-0.53742,578.05
> view matrix models
> #2,-0.62551,0.58326,0.51821,12.687,0.1337,0.73449,-0.66531,64.427,-0.76867,-0.34688,-0.53742,570.92
> view matrix models
> #2,-0.62551,0.58326,0.51821,11.174,0.1337,0.73449,-0.66531,61.295,-0.76867,-0.34688,-0.53742,572.84
> view matrix models
> #3,-0.7113,0.43549,0.55173,43.968,0.11119,0.84477,-0.52345,26.122,-0.69404,-0.31098,-0.6493,576.48
> ui mousemode right translate
> fitmap #2 inMap #3 search 50 radius 5
Found 48 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).
Average map values and times found:
0.7957 (3), 0.2752 (1), 0.2694 (1), 0.2603 (1), 0.2586 (1), 0.2478 (1), 0.247
(1), 0.236 (1), 0.2281 (1), 0.2244 (1), 0.2236 (1), 0.2198 (1), 0.2184 (1),
0.2182 (1), 0.2181 (1), 0.2179 (1), 0.2149 (1), 0.2123 (1), 0.2066 (1), 0.2063
(1), 0.2053 (1), 0.2041 (1), 0.2038 (1), 0.1964 (1), 0.1952 (1), 0.1934 (1),
0.1906 (1), 0.1855 (1), 0.1854 (1), 0.1845 (1), 0.184 (1), 0.1836 (1), 0.1813
(1), 0.1803 (1), 0.1802 (1), 0.1791 (1), 0.1782 (1), 0.173 (1), 0.1692 (1),
0.1629 (1), 0.1615 (1), 0.161 (1), 0.1521 (1), 0.1469 (1), 0.1467 (1), 0.1379
(1), 0.1364 (1), 0.1273 (1)
Best fit found:
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P524_J196_008_volume_map_sharp.mrc (#3) using 13508 atoms
average map value = 0.7957, steps = 296
shifted from previous position = 11.1
rotated from previous position = 42.9 degrees
atoms outside contour = 1175, contour level = 0.26325
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P524_J196_008_volume_map_sharp.mrc (#3) coordinates:
Matrix rotation and translation
0.99985680 0.00544810 -0.01601885 2.27513073
-0.00533166 0.99995906 0.00730352 -0.72074613
0.01605802 -0.00721715 0.99984496 -1.60146868
Axis -0.39433034 -0.87109504 -0.29274053
Axis point 97.50312411 0.00000000 146.06788582
Rotation angle (degrees) 1.05497840
Shift along axis 0.19950009
Found 48 fits.
> select #4
2 models selected
> volume #4 level 0.1779
> ui mousemode right "move picked models"
> ~select #4
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #2,-0.70466,0.42762,0.56622,269.23,0.098265,0.84912,-0.51898,197.27,-0.70271,-0.31007,-0.64036,654.75
> view matrix models
> #4,0.78936,0.56221,-0.24664,65.715,0.57256,-0.81913,-0.034754,352.17,-0.22157,-0.11378,-0.96848,647.53
> view matrix models
> #2,-0.70466,0.42762,0.56622,267.46,0.098265,0.84912,-0.51898,195.68,-0.70271,-0.31007,-0.64036,662.05
> view matrix models
> #2,-0.70466,0.42762,0.56622,292.01,0.098265,0.84912,-0.51898,266.54,-0.70271,-0.31007,-0.64036,484.39
> view matrix models
> #2,-0.70466,0.42762,0.56622,120.64,0.098265,0.84912,-0.51898,4.3448,-0.70271,-0.31007,-0.64036,622.45
> view matrix models
> #3,-0.7113,0.43549,0.55173,17.493,0.11119,0.84477,-0.52345,-0.23867,-0.69404,-0.31098,-0.6493,530.76
> view matrix models
> #3,-0.7113,0.43549,0.55173,16.877,0.11119,0.84477,-0.52345,-0.94166,-0.69404,-0.31098,-0.6493,530.12
> view matrix models
> #3,-0.7113,0.43549,0.55173,28.014,0.11119,0.84477,-0.52345,-5.4271,-0.69404,-0.31098,-0.6493,623.18
> view matrix models
> #3,-0.7113,0.43549,0.55173,22.924,0.11119,0.84477,-0.52345,-12.076,-0.69404,-0.31098,-0.6493,621.88
> view matrix models
> #2,-0.70466,0.42762,0.56622,254.98,0.098265,0.84912,-0.51898,216.6,-0.70271,-0.31007,-0.64036,482.4
> view matrix models
> #2,-0.70466,0.42762,0.56622,267.62,0.098265,0.84912,-0.51898,237.55,-0.70271,-0.31007,-0.64036,464.65
> view matrix models
> #2,-0.70466,0.42762,0.56622,270.66,0.098265,0.84912,-0.51898,198.68,-0.70271,-0.31007,-0.64036,668.43
> transparency (#!2 & sel) 0
> volume #4 step 1
> transparency (#!2 & sel) 0
> volume #4 level 0.1554
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!3 models
> hide #!4 models
> show #!4 models
> fitmap #2 inMap #3 search 50 radius 5
Found 0 unique fits from 50 random placements having fraction of points inside
contour >= 0.100 (0 of 50).
Found 0 fits.
> fitmap #2 inMap #4 search 50 radius 5
Found 47 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).
Average map values and times found:
0.344 (3), 0.2581 (2), 0.2509 (1), 0.2382 (1), 0.2382 (1), 0.2375 (1), 0.2348
(1), 0.2317 (1), 0.2289 (1), 0.2285 (1), 0.2272 (1), 0.2271 (1), 0.2227 (1),
0.221 (1), 0.2191 (1), 0.2186 (1), 0.2182 (1), 0.2135 (1), 0.2124 (1), 0.2059
(1), 0.2017 (1), 0.1964 (1), 0.1928 (1), 0.191 (1), 0.1894 (1), 0.1889 (1),
0.1876 (1), 0.1858 (1), 0.1856 (1), 0.1848 (1), 0.184 (1), 0.1826 (1), 0.1824
(1), 0.1766 (1), 0.1731 (1), 0.1728 (1), 0.1718 (1), 0.1679 (1), 0.1677 (1),
0.1657 (1), 0.165 (1), 0.1642 (1), 0.1574 (1), 0.1514 (1), 0.146 (1), 0.1454
(1), 0.1276 (1)
Best fit found:
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P698_J50_005_volume_map_sharp.mrc (#4) using 13508 atoms
average map value = 0.344, steps = 448
shifted from previous position = 13.3
rotated from previous position = 76.1 degrees
atoms outside contour = 3173, contour level = 0.15539
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P698_J50_005_volume_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
-0.24681210 0.95786437 0.14689982 69.86302248
-0.37385946 -0.23397262 0.89748863 174.52924056
0.89404295 0.16659114 0.41585394 -47.85704067
Axis -0.43174196 -0.44133828 -0.78665075
Axis point 98.56204672 86.70301251 -0.00000000
Rotation angle (degrees) 122.17218344
Shift along axis -69.54245630
Found 47 fits.
> volume #4 level 0.2118
> show sel cartoons
> hide sel surfaces
> hide sel atoms
> ~select #2
Nothing selected
> transparency #2,4 0
> view matrix models
> #4,0.78936,0.56221,-0.24664,-10.035,0.57256,-0.81913,-0.034754,330.19,-0.22157,-0.11378,-0.96848,579.33
> undo
> ui mousemode right translate
> volume #4 level 0.302
> volume #4 level 0.4485
> volume #4 level 0.4316
> volume #4 level 0.4936
> hide #!4 models
> show #!1 models
> select #1
2 models selected
> ui mousemode right "move picked models"
> view matrix models
> #1,0.92213,-0.172,0.34656,16.665,0.15641,0.98501,0.072694,-80.821,-0.35386,-0.012828,0.93521,231.91
> view matrix models
> #1,0.92213,-0.172,0.34656,-32.8,0.15641,0.98501,0.072694,-117.6,-0.35386,-0.012828,0.93521,174.41
> ~select #1
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #2,-0.62552,0.58347,0.51797,136.44,0.13385,0.7343,-0.6655,124.83,-0.76864,-0.34695,-0.53742,622.36
> ui mousemode right select
> select clear
> open C:/Users/asus/Desktop/cryosparc_P2_J284_006_volume_map_sharp.mrc
Opened cryosparc_P2_J284_006_volume_map_sharp.mrc as #5, grid size
300,300,300, pixel 1.08, shown at level 0.184, step 2, values float32
QWindowsWindow::setGeometry: Unable to set geometry 2560x1596-2560+34 (frame:
2582x1652-2571-11) on QWidgetWindow/"MainWindowClassWindow" on
"\\\\.\DISPLAY2". Resulting geometry: 2560x1346-2560+34 (frame:
2582x1402-2571-11) margins: 11, 45, 11, 11 minimum size: 477x798 MINMAXINFO
maxSize=0,0 maxpos=0,0 mintrack=976,1652 maxtrack=0,0)
> select #5
2 models selected
> ui mousemode right "move picked models"
> view matrix models #5,1,0,0,248.85,0,1,0,-92.825,0,0,1,55.875
> volume #5 level 0.3125
> surface dust #5 size 10.8
> ~select #5
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #1,0.92213,-0.172,0.34656,-154.49,0.15641,0.98501,0.072694,-21.577,-0.35386,-0.012828,0.93521,228.31
> view matrix models
> #2,-0.62552,0.58347,0.51797,218.5,0.13385,0.7343,-0.6655,75.557,-0.76864,-0.34695,-0.53742,610.84
> view matrix models #5,1,0,0,244.3,0,1,0,-78.081,0,0,1,75.784
> view matrix models
> #2,-0.62552,0.58347,0.51797,300.89,0.13385,0.7343,-0.6655,12.804,-0.76864,-0.34695,-0.53742,577.97
> view matrix models #5,1,0,0,257.44,0,1,0,-84.489,0,0,1,76.316
> ~select #2
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> hide #!1 models
> ui mousemode right translate
> ui mousemode right "move picked models"
> view matrix models #5,1,0,0,180.53,0,1,0,-96.921,0,0,1,89.699
> view matrix models #5,1,0,0,219.64,0,1,0,-88.587,0,0,1,73.5
> ~select #2
Nothing selected
> ui mousemode right "move picked models"
> view matrix models #5,1,0,0,241.12,0,1,0,-91.313,0,0,1,98.699
> ui mousemode right "rotate selected models"
> ui mousemode right "move picked models"
> view matrix models
> #2,-0.62552,0.58347,0.51797,305.08,0.13385,0.7343,-0.6655,35.794,-0.76864,-0.34695,-0.53742,582.98
> ui mousemode right "rotate selected models"
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #2,-0.5055,0.12372,0.85391,304.37,0.11297,0.99064,-0.076656,-126.48,-0.8554,0.057717,-0.51475,516.88
> view matrix models
> #2,-0.38572,0.80595,0.44906,229.8,0.43037,0.5877,-0.68512,11.216,-0.81609,-0.071004,-0.57355,545.89
> view matrix models
> #2,-0.082833,0.9449,-0.3167,296.7,0.47435,-0.2421,-0.84639,195.16,-0.87643,-0.22034,-0.42816,557.5
> view matrix models
> #2,0.14615,0.51812,-0.84273,439.6,0.27851,-0.83897,-0.4675,272.96,-0.94925,-0.16638,-0.26692,529.06
> view matrix models
> #2,0.15645,-0.23667,-0.95891,606.57,-0.0050213,-0.97104,0.23885,212.79,-0.98767,-0.032553,-0.15311,487.99
> view matrix models
> #2,-0.03597,-0.86665,-0.49763,673.77,-0.29909,-0.46579,0.83282,53.721,-0.95355,0.17879,-0.24245,458.3
> view matrix models
> #2,-0.23209,-0.63011,-0.74101,713.86,-0.26031,-0.69378,0.67149,122.34,-0.93722,0.34874,-0.0030094,374.86
> fitmap #2 inMap #5 search 50 radius 5
Found 50 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).
Average map values and times found:
0.2348 (1), 0.2302 (1), 0.2178 (1), 0.2167 (1), 0.2113 (1), 0.2067 (1), 0.2054
(1), 0.1993 (1), 0.1938 (1), 0.1927 (1), 0.1894 (1), 0.1887 (1), 0.1884 (1),
0.1829 (1), 0.1827 (1), 0.1801 (1), 0.1792 (1), 0.1788 (1), 0.1769 (1), 0.1764
(1), 0.1758 (1), 0.1731 (1), 0.1731 (1), 0.1726 (1), 0.1719 (1), 0.1637 (1),
0.1615 (1), 0.1604 (1), 0.1601 (1), 0.1572 (1), 0.1564 (1), 0.1533 (1), 0.1519
(1), 0.1516 (1), 0.1504 (1), 0.1497 (1), 0.1495 (1), 0.1468 (1), 0.1468 (1),
0.146 (1), 0.1439 (1), 0.1436 (1), 0.1349 (1), 0.1345 (1), 0.1331 (1), 0.1311
(1), 0.1265 (1), 0.1264 (1), 0.1221 (1), 0.1209 (1)
Best fit found:
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P2_J284_006_volume_map_sharp.mrc (#5) using 13508 atoms
average map value = 0.2348, steps = 136
shifted from previous position = 9.06
rotated from previous position = 12.3 degrees
atoms outside contour = 9485, contour level = 0.31248
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P2_J284_006_volume_map_sharp.mrc (#5) coordinates:
Matrix rotation and translation
0.18027224 0.91070530 -0.37164209 23.71960167
-0.60783440 0.40019873 0.68584123 66.94015334
0.77332996 0.10225865 0.62570274 -138.33896542
Axis -0.29335417 -0.57555236 -0.76333663
Axis point 112.20090741 55.58338870 0.00000000
Rotation angle (degrees) 84.08304697
Shift along axis 60.11339249
Found 50 fits.
> ui mousemode right "move picked models"
> view matrix models
> #2,0.18027,0.91071,-0.37164,264.82,-0.60783,0.4002,0.68584,-26.489,0.77333,0.10226,0.6257,-36.382
> ~select #2
Nothing selected
> select #5
2 models selected
> transparency #5.1 30
> view matrix models
> #2,0.18027,0.91071,-0.37164,337.48,-0.60783,0.4002,0.68584,-66.76,0.77333,0.10226,0.6257,-56.492
> ui mousemode right "rotate selected models"
> ~select #5
Nothing selected
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #2,-0.42314,0.72209,-0.5473,524.35,-0.86373,-0.50395,0.0028872,292.41,-0.27372,0.47394,0.83693,30.373
> view matrix models
> #2,-0.69801,0.10433,-0.70845,728.37,0.016221,-0.98677,-0.16131,249.72,-0.7159,-0.12408,0.68708,260.39
> view matrix models
> #2,-0.2328,0.42971,-0.87244,608.86,0.69917,-0.54961,-0.45726,93.051,-0.676,-0.71643,-0.17249,537.63
> view matrix models
> #2,-0.39824,0.91285,-0.089998,392.06,0.65727,0.21554,-0.72217,5.676,-0.63984,-0.34675,-0.68583,561
> view matrix models
> #2,-0.45581,0.84531,0.27872,343.06,0.5818,0.51994,-0.62544,-57.883,-0.6736,-0.12292,-0.7288,532.71
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.45581,0.84531,0.27872,261.06,0.5818,0.51994,-0.62544,-68.241,-0.6736,-0.12292,-0.7288,533.32
> view matrix models
> #2,-0.45581,0.84531,0.27872,232.03,0.5818,0.51994,-0.62544,-30.348,-0.6736,-0.12292,-0.7288,552.53
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.48961,0.049832,0.87052,274.97,0.18785,0.98095,0.049501,-177.78,-0.85147,0.18776,-0.48964,479.14
> view matrix models
> #2,-0.042906,-0.88467,0.46423,450.57,0.021025,0.46376,0.88571,-211.6,-0.99886,0.047763,-0.0012975,437.64
> view matrix models
> #2,0.028574,-0.99682,-0.07438,565.32,-0.027462,-0.075166,0.99679,-120.15,-0.99921,-0.02644,-0.029522,457.65
> view matrix models
> #2,0.053046,-0.98533,-0.16219,575.82,-0.029136,-0.16388,0.98605,-100.55,-0.99817,-0.04758,-0.037402,463.1
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> view matrix models
> #2,0.053046,-0.98533,-0.16219,610.57,-0.029136,-0.16388,0.98605,-80.555,-0.99817,-0.04758,-0.037402,466.64
> view matrix models
> #2,0.053046,-0.98533,-0.16219,615.96,-0.029136,-0.16388,0.98605,-87.958,-0.99817,-0.04758,-0.037402,470.14
> fitmap #2 inMap #5 search 50 radius 5
Found 50 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).
Average map values and times found:
0.2216 (1), 0.2125 (1), 0.2109 (1), 0.2052 (1), 0.1952 (1), 0.1944 (1), 0.1937
(1), 0.1904 (1), 0.1899 (1), 0.1808 (1), 0.1793 (1), 0.1788 (1), 0.1786 (1),
0.178 (1), 0.1772 (1), 0.1708 (1), 0.1694 (1), 0.1677 (1), 0.1675 (1), 0.1664
(1), 0.1657 (1), 0.163 (1), 0.1608 (1), 0.1608 (1), 0.1605 (1), 0.1572 (1),
0.1566 (1), 0.1552 (1), 0.1546 (1), 0.1537 (1), 0.1527 (1), 0.1509 (1), 0.1507
(1), 0.1505 (1), 0.1502 (1), 0.15 (1), 0.1499 (1), 0.1492 (1), 0.1413 (1),
0.1403 (1), 0.1395 (1), 0.1395 (1), 0.1363 (1), 0.1351 (1), 0.1308 (1), 0.1253
(1), 0.1166 (1), 0.1162 (1), 0.1118 (1), 0.1083 (1)
Best fit found:
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P2_J284_006_volume_map_sharp.mrc (#5) using 13508 atoms
average map value = 0.2216, steps = 108
shifted from previous position = 3.95
rotated from previous position = 8.59 degrees
atoms outside contour = 9676, contour level = 0.31248
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P2_J284_006_volume_map_sharp.mrc (#5) coordinates:
Matrix rotation and translation
0.01917552 0.96180876 -0.27304989 24.44219082
-0.42225293 0.25533984 0.86977237 20.13722091
0.90627519 0.09861774 0.41102283 -117.86081288
Axis -0.39043357 -0.59708921 -0.70074682
Axis point 79.50362988 30.89093281 0.00000000
Rotation angle (degrees) 99.04620439
Shift along axis 61.02382045
Found 50 fits.
> ~select #2
Nothing selected
> view matrix models #5,1,0,0,137.98,0,1,0,-173.76,0,0,1,109.04
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> select #2
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> view matrix models
> #2,-0.76852,0.63679,-0.062148,437.49,0.44561,0.60242,0.66221,-263.38,0.45913,0.48123,-0.74673,222.02
> view matrix models
> #2,-0.59698,0.48038,0.64253,295.18,0.3842,0.87428,-0.29668,-114.1,-0.70427,0.06975,-0.70649,516.46
> view matrix models
> #2,-0.55045,-0.44659,0.70538,453,-0.13284,0.88099,0.45411,-165.17,-0.82423,0.15626,-0.54427,490.56
> view matrix models
> #2,-0.5618,0.53262,0.63301,280.23,0.2578,0.83979,-0.4778,-47.315,-0.78608,-0.10524,-0.6091,546.66
> view matrix models
> #2,-0.39571,0.89881,0.18858,265.72,0.43742,0.36501,-0.82185,78.249,-0.80751,-0.24273,-0.5376,563.17
> view matrix models
> #2,-0.33779,0.94061,-0.034007,290.67,0.49467,0.14668,-0.85661,116.38,-0.80075,-0.30618,-0.51483,569.63
> ui mousemode right "move picked models"
> ~select #2
Nothing selected
> view matrix models #5,1,0,0,229.47,0,1,0,-87.034,0,0,1,90.834
> fitmap #2 inMap #5 search 50 radius 5
Found 50 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).
Average map values and times found:
0.2435 (1), 0.2147 (1), 0.2133 (1), 0.2057 (1), 0.205 (1), 0.2003 (1), 0.1998
(1), 0.199 (1), 0.1969 (1), 0.1954 (1), 0.1939 (1), 0.1938 (1), 0.1891 (1),
0.1855 (1), 0.1843 (1), 0.184 (1), 0.1835 (1), 0.1828 (1), 0.182 (1), 0.179
(1), 0.1789 (1), 0.1775 (1), 0.1767 (1), 0.1758 (1), 0.1733 (1), 0.1727 (1),
0.1719 (1), 0.1717 (1), 0.1669 (1), 0.1645 (1), 0.1614 (1), 0.1569 (1), 0.1541
(1), 0.1504 (1), 0.1489 (1), 0.146 (1), 0.1437 (1), 0.1397 (1), 0.1394 (1),
0.1394 (1), 0.1375 (1), 0.1372 (1), 0.1324 (1), 0.1318 (1), 0.1315 (1), 0.1288
(1), 0.1222 (1), 0.1186 (1), 0.1122 (1), 0.1072 (1)
Best fit found:
Fit molecule 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) to map
cryosparc_P2_J284_006_volume_map_sharp.mrc (#5) using 13508 atoms
average map value = 0.2435, steps = 356
shifted from previous position = 14.2
rotated from previous position = 27.2 degrees
atoms outside contour = 9314, contour level = 0.31248
Position of 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb (#2) relative to
cryosparc_P2_J284_006_volume_map_sharp.mrc (#5) coordinates:
Matrix rotation and translation
-0.00649607 0.86146626 -0.50777332 96.16480214
0.34169519 -0.47530727 -0.81075727 347.46632017
-0.93978836 -0.17877039 -0.29127120 432.02429059
Axis 0.68299706 0.46688469 -0.56172386
Axis point -0.00000000 64.79180016 319.17695054
Rotation angle (degrees) 152.44130041
Shift along axis -14.77137064
Found 50 fits.
> hide #!5 models
> show #!4 models
> view matrix models
> #4,0.78936,0.56221,-0.24664,52.641,0.57256,-0.81913,-0.034754,49.356,-0.22157,-0.11378,-0.96848,560.88
> show #!3 models
> view matrix models
> #3,-0.7113,0.43549,0.55173,27.431,0.11119,0.84477,-0.52345,107.08,-0.69404,-0.31098,-0.6493,634.44
> view matrix models
> #3,-0.7113,0.43549,0.55173,27.102,0.11119,0.84477,-0.52345,80.391,-0.69404,-0.31098,-0.6493,627.62
> view matrix models
> #4,0.78936,0.56221,-0.24664,55.16,0.57256,-0.81913,-0.034754,-50.412,-0.22157,-0.11378,-0.96848,553.35
> view matrix models
> #2,-0.0064961,0.86147,-0.50777,327.55,0.3417,-0.47531,-0.81076,236.15,-0.93979,-0.17877,-0.29127,527.25
> view matrix models
> #4,0.78936,0.56221,-0.24664,265.59,0.57256,-0.81913,-0.034754,69.063,-0.22157,-0.11378,-0.96848,517.49
> view matrix models
> #3,-0.7113,0.43549,0.55173,90.401,0.11119,0.84477,-0.52345,116.32,-0.69404,-0.31098,-0.6493,624.78
> view matrix models
> #3,-0.7113,0.43549,0.55173,224.69,0.11119,0.84477,-0.52345,45.821,-0.69404,-0.31098,-0.6493,598.44
> ui mousemode right "rotate selected models"
> select #3
2 models selected
> view matrix models
> #3,-0.11268,0.93575,-0.33419,187.81,0.28864,-0.291,-0.91214,309.04,-0.95078,-0.19924,-0.2373,544.59
> ~select #3
Nothing selected
> select #4
2 models selected
> view matrix models
> #4,-0.1669,0.89323,-0.41746,451.02,0.98594,0.15476,-0.063028,-273.55,0.0083096,-0.42211,-0.90651,526.66
> view matrix models
> #4,-0.83267,0.33492,-0.441,759.95,0.44594,0.87771,-0.17542,-302.61,0.32832,-0.34273,-0.8802,423.11
> view matrix models
> #4,-0.90372,0.34737,-0.25025,728.64,0.40706,0.87828,-0.25086,-275.53,0.13265,-0.32858,-0.93512,479.54
> ~select #4
Nothing selected
> show #!5 models
> ui mousemode right "move picked models"
> view matrix models #5,1,0,0,18.551,0,1,0,51.345,0,0,1,126.39
> view matrix models #5,1,0,0,36.242,0,1,0,40.835,0,0,1,124.93
> view matrix models
> #3,-0.11268,0.93575,-0.33419,210.01,0.28864,-0.291,-0.91214,293.83,-0.95078,-0.19924,-0.2373,539.96
> view matrix models
> #4,-0.90372,0.34737,-0.25025,708.92,0.40706,0.87828,-0.25086,-264.28,0.13265,-0.32858,-0.93512,480.52
> ui mousemode right "rotate selected models"
> select #5
2 models selected
> view matrix models
> #5,0.77097,0.42623,0.47321,-76.033,-0.62351,0.35378,0.69719,132.49,0.12975,-0.83257,0.53851,318.53
> view matrix models
> #5,-0.21846,0.57225,0.79044,2.3145,-0.74391,-0.6219,0.24463,387.51,0.63156,-0.53458,0.56156,186.86
> view matrix models
> #5,-0.56698,0.29307,0.76983,106.55,-0.38858,-0.91921,0.063743,411.09,0.72632,-0.263,0.63505,114.86
> view matrix models
> #5,-0.25077,0.51839,0.81755,11.928,-0.5691,-0.76213,0.30868,373.23,0.78309,-0.38786,0.48614,151.03
> view matrix models
> #5,-0.36561,0.75787,0.54033,34.948,-0.47156,-0.65133,0.59448,293.1,0.80248,-0.037453,0.59551,71.804
> view matrix models
> #5,-0.37062,0.74708,0.55182,35.661,-0.44737,-0.66426,0.59884,290.78,0.81394,-0.024929,0.58041,70.381
> view matrix models
> #5,-0.32916,0.68779,0.64699,23.619,-0.47542,-0.71271,0.51578,316.73,0.81586,-0.13782,0.56158,91.966
> view matrix models
> #5,0.34922,0.86172,0.36808,-65.815,-0.71416,-0.0095491,0.69992,206.77,0.60665,-0.50729,0.61207,177.99
> view matrix models
> #5,0.33335,0.75638,0.56283,-77.424,-0.82786,-0.050833,0.55863,254.34,0.45115,-0.65216,0.60923,226.85
> view matrix models
> #5,0.32589,0.75807,0.56491,-76.883,-0.82859,-0.058699,0.55678,256.07,0.45523,-0.64953,0.609,225.81
> view matrix models
> #5,0.32293,0.74861,0.57906,-77.141,-0.83641,-0.06056,0.54474,259.55,0.44287,-0.66024,0.60659,229.92
> view matrix models
> #5,0.58004,0.63679,0.508,-87.03,-0.75696,0.19096,0.62494,192.19,0.30095,-0.74702,0.59279,268.76
> ~select #5
Nothing selected
> select #5
2 models selected
> transparency #5.1 0
> ~select #5
Nothing selected
> volume #4 level 0.3471
> ui mousemode right "contour level"
> volume #3 level 0.2279
> ui mousemode right "translate selected models"
> close
> open C:\Users\asus\Desktop\20211214_prc2_P524_J153_dock_C36_complex-
> coot-0_real_space_refined.pdb format pdb
Chain information for 20211214_prc2_P524_J153_dock_C36_complex-
coot-0_real_space_refined.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
M | No description available
N | No description available
P | No description available
Q | No description available
Z | No description available
> open C:/Users/asus/Desktop/cryosparc_P524_J153_008_volume_map_sharp.mrc
Opened cryosparc_P524_J153_008_volume_map_sharp.mrc as #2, grid size
360,360,360, pixel 1.08, shown at level 0.119, step 2, values float32
> volume #2 level 0.245
> volume #2 level 0.2547
> ui mousemode right "contour level"
> volume #2 level 0.1979
> surface dust #2 size 10.8
> select #2
2 models selected
> transparency #2.1 30
> volume sel style surface
> lighting soft
> color #2 #d5fff9 models transparency 0
> color #2 #ddfff5 models transparency 0
> color #2 #d0e0ff models transparency 0
> color #2 #c4dcff models transparency 0
> color #2 #cde5ff models transparency 0
> color #2 #d4efff models transparency 0
> color #2 #d8eeff models transparency 0
> transparency #2.1 30
> ~select #2
Nothing selected
> select #1
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> hide sel atoms
> show sel cartoons
> ~select #1
Nothing selected
> color #2 #faffd8b3 models
> color #2 #fcffe5b3 models
> color #2 #f7ffebb3 models
> color #2 #fbfff6b3 models
> color #2 #f9f3ffb3 models
> volume #2 level 0.3061
> save "C:/Users/asus/Desktop/J153 fit.pdb"
> select #1
13508 atoms, 13815 bonds, 10 pseudobonds, 1737 residues, 2 models selected
> select #2
2 models selected
> save "C:/Users/asus/Desktop/Fit J153 map .mrc" models #2
> save "C:/Users/asus/Desktop/fit J153 model.pdb"
> close
> open "C:\Users\asus\Desktop\Fit J153 map .mrc" format mrc
Opened Fit J153 map .mrc as #1, grid size 360,360,360, pixel 1.08, shown at
level 0.119, step 2, values float32
> close
> open "C:\Users\asus\Desktop\fit J153 model.pdb" format pdb
Chain information for fit J153 model.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
M | No description available
N | No description available
P | No description available
Q | No description available
Z | No description available
> close
> open "C:\Users\asus\Desktop\Fit J153 map .mrc" format mrc
Opened Fit J153 map .mrc as #1, grid size 360,360,360, pixel 1.08, shown at
level 0.119, step 2, values float32
> close
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.13587 Core Profile Forward-Compatible Context 20.4.2 26.20.15029.27016
OpenGL renderer: AMD Radeon RX 5700 XT
OpenGL vendor: ATI Technologies Inc.
Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7B89
OS: Microsoft Windows 10 企业版 (Build 19041)
Memory: 17,128,079,360
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 3700X 8-Core Processor
OSLanguage: zh-CN
Locale: ('zh_CN', 'cp936')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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