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Opened 3 years ago
Closed 3 years ago
#6792 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 1.3rc202111110135 (2021-11-11 01:35:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00002f48 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007924 (most recent call first):
File "Windows fatal exception: code 0x8001010e
D:Windows fatal exception: code 0x8001010e\p
rogWindows fatal exception: code 0xram\chimera8001010e
X 1.3\ChimeraX 1Windows fatal exception: .code 0x38001010er
c20Windows fatal exception: 2code 0x18001010e1
111Windows fatal exception: 0code 0x18001010e3
5\bWindows fatal exception: icode 0xn\l8001010ei
b\mWindows fatal exception: ucode 0xl8001010et
iprWindows fatal exception: ocode 0xc8001010ee
ssiWindows fatal exception: ncode 0xg8001010e\
pooWindows fatal exception: lcode 0x.8001010ep
y", line 528 in _handle_tasks
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\thWindows fatal exception: rcode 0xe8001010ea
dingWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 973Windows fatal exception: code 0x8001010e in
_code 0xWindows fatal exception: 8001010ecode 0x
b8001010eoWindows fatal exception: ocode 0x
8001010e
tWindows fatal exception: Windows fatal exception: code 0xcode 0xs8001010e8001010e
tWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010er8001010e
a
Windows fatal exception: pWindows fatal exception: _code 0xcode 0xi8001010en8001010en
e
rWindows fatal exception: Windows fatal exception: code 0xcode 0x
8001010e File
8001010e"
Windows fatal exception: Dcode 0xWindows fatal exception: 8001010ecode 0x
:8001010eWindows fatal exception:
code 0xWindows fatal exception: 8001010ecode 0x
\8001010eWindows fatal exception:
code 0xp8001010eWindows fatal exception: rcode 0xo8001010e
g
Windows fatal exception: rcode 0xa8001010em
\cWindows fatal exception: hcode 0xi8001010em
eraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0xWindows fatal exception: 000030b4code 0x (most recent call first):
8001010e File
"DWindows fatal exception: :code 0x\8001010ep
roWindows fatal exception: gcode 0xr8001010ea
m\Windows fatal exception: ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x38001010e\
ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: rcode 0xc8001010e2
02Windows fatal exception: 1code 0x18001010e1
11Windows fatal exception: 0code 0x18001010e3
5\bin\lib\multiprocessing\connection.py", line Windows fatal exception: 816code 0x in 8001010e_
exWindows fatal exception: code 0xha8001010eu
stWindows fatal exception: icode 0xv8001010ee
_wWindows fatal exception: acode 0xi8001010et
Windows fatal exception: File code 0x"8001010eD
:\Windows fatal exception: pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e\
chWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X 1.3rc202111110135\bin\lib\multiprocessiWindows fatal exception: ncode 0xg8001010e\
coWindows fatal exception: ncode 0xn8001010ee
ctiWindows fatal exception: ocode 0xn8001010e.
pyWindows fatal exception: "code 0x, line 8001010e884
in Windows fatal exception: wcode 0xa8001010ei
t
Windows fatal exception: File code 0x"8001010eD
:\Windows fatal exception: pcode 0xr8001010eo
grWindows fatal exception: code 0xa8001010em
\cWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eC
himeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChWindows fatal exception: code 0xi8001010em
eraXWindows fatal exception: code 0x18001010e.
3rcWindows fatal exception: 2code 0x08001010e2
11Windows fatal exception: 1code 0x18001010e1
01Windows fatal exception: 3code 0x58001010e\
biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xt8001010eh
reWindows fatal exception: acode 0xd8001010ei
ngWindows fatal exception: .pcode 0xy8001010e"
, line 930Windows fatal exception: code 0x in 8001010e_
boWindows fatal exception: ocode 0xt8001010es
trap
Thread 0x00007554 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002588 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\cWindows fatal exception: hcode 0xi8001010em
eraWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
rcWindows fatal exception: 2code 0x08001010e2
11Windows fatal exception: 1code 0x18001010e1
013Windows fatal exception: 5code 0x\8001010eb
inWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: tcode 0xh8001010er
eaWindows fatal exception: dcode 0xWindows fatal exception: code 0x8001010e8001010e
iWindows fatal exception: ncode 0xg8001010e.
pyWindows fatal exception: "code 0x, line 8001010e910
in rWindows fatal exception: ucode 0xn8001010e
File "Windows fatal exception: Dcode 0x:8001010e\
prWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: \code 0xc8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010eWindows fatal exception:
code 0x38001010eWindows fatal exception: \
code 0xCWindows fatal exception: h8001010ei
mcode 0xWindows fatal exception: e8001010ecode 0xr8001010ea
XWindows fatal exception: code 0x18001010e.
3rWindows fatal exception: ccode 0x28001010e0
21Windows fatal exception: 1code 0x18001010e1
10Windows fatal exception: 1code 0x38001010e5
\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010et
hrWindows fatal exception: ecode 0xa8001010edWindows fatal exception:
code 0xWindows fatal exception: icode 0xn8001010e8001010eg
.Windows fatal exception: pcode 0xWindows fatal exception: 8001010ecode 0x
8001010ey
", line Windows fatal exception: 973code 0x in 8001010e_
boWindows fatal exception: ocode 0xt8001010es
trWindows fatal exception: acode 0xp8001010e_
iWindows fatal exception: ncode 0xn8001010ee
r
Windows fatal exception: File code 0x"8001010eD
:\Windows fatal exception: pcode 0xr8001010eWindows fatal exception:
code 0xo8001010eWindows fatal exception:
code 0xg8001010eWindows fatal exception: rcode 0xa8001010em
\
cWindows fatal exception: Windows fatal exception: hcode 0xi8001010emcode 0x
e8001010eWindows fatal exception: r
code 0xa8001010eX
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e18001010e.
3
Windows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X 1Windows fatal exception: .code 0x38001010er
c2Windows fatal exception: 0code 0xWindows fatal exception: code 0x28001010e8001010e1
11
Windows fatal exception: 1Windows fatal exception: code 0xcode 0x8001010e18001010e
Windows fatal exception: 0Windows fatal exception: 1code 0xcode 0x8001010e8001010e
3Windows fatal exception: 5code 0x\8001010eb
inWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: tcode 0xh8001010er
eaWindows fatal exception: dcode 0xi8001010en
g.Windows fatal exception: pcode 0xy8001010e"
, line Windows fatal exception: 930code 0x in 8001010e_
boWindows fatal exception: ocode 0xts8001010et
raWindows fatal exception: pcode 0x
8001010e
Thread 0x000026ec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007764 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b88 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000079a8 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003968 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005c08 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007c50 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007d7c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007654 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005eec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002394 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000045d0 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00006640 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007f3c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003530 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1348 in SaveRegsToMRC
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1432 in WriteAllRegionsMRCFile
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 87 in _run_code
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002f48 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007924 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000030b4 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 884 in wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007554 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002588 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000026ec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007764 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b88 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000079a8 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003968 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005c08 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007c50 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007d7c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007654 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005eec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002394 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000045d0 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00006640 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007f3c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003530 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1348 in SaveRegsToMRC
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1432 in WriteAllRegionsMRCFile
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 87 in _run_code
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002f48 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007924 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000030b4 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 884 in wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007554 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002588 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000026ec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007764 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b88 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000079a8 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003968 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005c08 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007c50 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007d7c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007654 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005eec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002394 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000045d0 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00006640 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007f3c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003530 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1348 in SaveRegsToMRC
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1432 in WriteAllRegionsMRCFile
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 87 in _run_code
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002f48 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007924 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000030b4 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 884 in wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007554 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002588 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000026ec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007764 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b88 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000079a8 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003968 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005c08 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007c50 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007d7c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007654 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005eec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002394 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000045d0 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00006640 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007f3c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003530 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1348 in SaveRegsToMRC
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1432 in WriteAllRegionsMRCFile
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 87 in _run_code
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002f48 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007924 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000030b4 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 884 in wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007554 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002588 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000026ec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007764 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b88 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000079a8 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003968 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005c08 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007c50 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007d7c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007654 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005eec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002394 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000045d0 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00006640 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007f3c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003530 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1348 in SaveRegsToMRC
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\segger\segment_dialog.py", line 1432 in WriteAllRegionsMRCFile
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 87 in _run_code
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002f48 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007924 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000030b4 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\connection.py", line 884 in wait
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007554 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002588 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000026ec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007764 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b88 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000079a8 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003968 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005c08 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007c50 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007d7c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007654 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005eec (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002394 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000045d0 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00006640 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00007f3c (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\multiprocessing\pool.py", line 114 in worker
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 910 in run
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 973 in _bootstrap_inner
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003530 (most recent call first):
File "D:\program\chimeraX 1.3\ChimeraX 1.3rc202111110135\bin\lib\site-packages\chimerax\core\updateloop.py", line 141 in _redraw_timer_callback
Windows fatal exception: access violation
===== Log before crash start =====
> volume #1 level 0.04011
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20210408GAS2GAR/remove bat particles python scripts/MDFF for
> 044/combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb"
Chain information for combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb
---
Chain | Description
2.2/A | No description available
2.1/B | No description available
2.1/C | No description available
> view orient
> ui mousemode right select
> select #2
8031 atoms, 8198 bonds, 4 pseudobonds, 942 residues, 4 models selected
> ~select #2
Nothing selected
> ui mousemode right "translate selected models"
> select #2
8031 atoms, 8198 bonds, 4 pseudobonds, 942 residues, 4 models selected
> view matrix models #2,1,0,0,32.389,0,1,0,56.814,0,0,1,-3.1051
> view matrix models #2,1,0,0,34.843,0,1,0,58.194,0,0,1,40.171
> view matrix models #2,1,0,0,43.921,0,1,0,48.681,0,0,1,41.88
> ui tool show "Fit to Segments"
> ui tool show "Fit in Map"
Fit molecule combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#2.1) to map
MT_25_r1.mrc (#1) using 6849 atoms
average map value = 0.1159, steps = 56
shifted from previous position = 5.94
rotated from previous position = 0.807 degrees
atoms outside contour = 148, contour level = 0.040106
Position of combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#2.1)
relative to MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99991990 -0.01223080 -0.00325573 3.28289771
0.01225065 0.99990605 0.00614958 -10.72082700
0.00318021 -0.00618897 0.99997579 1.13776013
Axis -0.43815383 -0.22854668 0.86936047
Axis point 840.36006721 334.58940507 0.00000000
Rotation angle (degrees) 0.80675981
Shift along axis 2.00091890
Fit molecule combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#2.1) to map
MT_25_r1.mrc (#1) using 6849 atoms
average map value = 0.1159, steps = 44
shifted from previous position = 0.0229
rotated from previous position = 0.025 degrees
atoms outside contour = 146, contour level = 0.040106
Position of combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#2.1)
relative to MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99992257 -0.01202458 -0.00320244 3.20164108
0.01204530 0.99990613 0.00653031 -10.78030251
0.00312362 -0.00656838 0.99997355 1.31857611
Axis -0.46574950 -0.22493533 0.85585133
Axis point 859.12466429 340.60212988 0.00000000
Rotation angle (degrees) 0.80571686
Shift along axis 2.06221325
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.9966,-0.040727,0.071599,39.9,0.032473,0.99308,0.11289,7.599,-0.075701,-0.11018,0.99102,113.45
> view matrix models
> #2,0.99781,0.0097351,0.065477,20.415,-0.019504,0.98845,0.15026,13.686,-0.063259,-0.15121,0.98648,128.22
Fit molecule combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#2.1) to map
MT_25_r1.mrc (#1) using 6849 atoms
average map value = 0.1159, steps = 64
shifted from previous position = 1.18
rotated from previous position = 9.49 degrees
atoms outside contour = 148, contour level = 0.040106
Position of combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#2.1)
relative to MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99732674 -0.03160149 -0.06588411 31.48790596
0.02174242 0.98914599 -0.14531854 37.08069927
0.06976129 0.14349759 0.98718884 -78.52480314
Axis 0.89275248 -0.41929020 0.16489005
Axis point 0.00000000 565.68806596 211.80673120
Rotation angle (degrees) 9.30883497
Shift along axis -0.38462643
> transparency 50
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20210408GAS2GAR/remove bat particles python scripts/MDFF for
> 044/combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb"
Chain information for combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb
---
Chain | Description
3.2/A | No description available
3.1/B | No description available
3.1/C | No description available
> ~select #2
Nothing selected
> select #3
8031 atoms, 8198 bonds, 4 pseudobonds, 942 residues, 4 models selected
> view matrix models
> #3,0.99763,0.056442,0.03925,-34.711,-0.059668,0.99446,0.086565,-6.011,-0.034147,-0.088702,0.99547,49.446
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.99763,0.056442,0.03925,-0.5975,-0.059668,0.99446,0.086565,-4.9912,-0.034147,-0.088702,0.99547,168.44
> view matrix models
> #3,0.99763,0.056442,0.03925,12.1,-0.059668,0.99446,0.086565,40.3,-0.034147,-0.088702,0.99547,165.89
> view matrix models
> #3,0.99763,0.056442,0.03925,4.7283,-0.059668,0.99446,0.086565,38.506,-0.034147,-0.088702,0.99547,179.32
Fit molecule combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#3.1) to map
MT_25_r1.mrc (#1) using 6849 atoms
average map value = 0.1085, steps = 52
shifted from previous position = 5.28
rotated from previous position = 6.32 degrees
atoms outside contour = 171, contour level = 0.040106
Position of combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#3.1)
relative to MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99716805 -0.06472966 -0.03828777 42.09356883
0.06143980 0.99476771 -0.08162322 7.99592596
0.04337088 0.07903967 0.99592756 -49.30507441
Axis 0.73029017 -0.37117784 0.57350090
Axis point 0.00000000 623.01697646 55.73275575
Rotation angle (degrees) 6.31527829
Shift along axis -0.50389579
> transparency 0
> volume showOutlineBox true
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.99854,0.035789,0.040564,12.496,-0.044988,0.96581,0.25532,-4.5186,-0.030039,-0.25677,0.96601,257.8
> transparency 50
> transparency 0
> volume showOutlineBox false
> view matrix models
> #3,0.99821,0.043437,0.041092,9.1054,-0.050356,0.98126,0.186,11.43,-0.032242,-0.18774,0.98169,224.86
Fit molecule combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#3.1) to map
MT_25_r1.mrc (#1) using 6849 atoms
average map value = 0.1085, steps = 68
shifted from previous position = 0.831
rotated from previous position = 5.79 degrees
atoms outside contour = 167, contour level = 0.040106
Position of combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#3.1)
relative to MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99781759 -0.05547421 -0.03581431 37.58573767
0.04812121 0.98232905 -0.18087006 47.48520389
0.04521506 0.17875190 0.98285470 -88.19505990
Axis 0.93916331 -0.21161058 0.27054249
Axis point 0.00000000 516.00017528 213.75116320
Rotation angle (degrees) 11.03792435
Shift along axis 1.39026283
Fit molecule combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#3.1) to map
MT_25_r1.mrc (#1) using 6849 atoms
average map value = 0.1085, steps = 48
shifted from previous position = 0.0561
rotated from previous position = 0.0273 degrees
atoms outside contour = 171, contour level = 0.040106
Position of combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#3.1)
relative to MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99784614 -0.05521781 -0.03541279 37.40366382
0.04794138 0.98234062 -0.18085500 47.53041088
0.04477384 0.17876772 0.98287202 -88.06683453
Axis 0.93988835 -0.20957094 0.26961068
Axis point 0.00000000 515.34033477 214.17050876
Rotation angle (degrees) 11.02932609
Shift along axis 1.45051567
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20210408GAS2GAR/remove bat particles python scripts/MDFF for
> 044/combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb"
Chain information for combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb
---
Chain | Description
4.2/A | No description available
4.1/B | No description available
4.1/C | No description available
> ~select #3
Nothing selected
> select #4
8031 atoms, 8198 bonds, 4 pseudobonds, 942 residues, 4 models selected
> view matrix models
> #4,0.99571,0.004623,0.092453,-29.006,0.0041562,0.99551,-0.094541,29.386,-0.092475,0.094519,0.99122,-9.7936
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.99571,0.004623,0.092453,-41.634,0.0041562,0.99551,-0.094541,85.346,-0.092475,0.094519,0.99122,-12.774
> view matrix models
> #4,0.99571,0.004623,0.092453,-2.277,0.0041562,0.99551,-0.094541,67.363,-0.092475,0.094519,0.99122,-52.203
> view matrix models
> #4,0.99571,0.004623,0.092453,20.244,0.0041562,0.99551,-0.094541,77.688,-0.092475,0.094519,0.99122,-51.453
> view matrix models
> #4,0.99571,0.004623,0.092453,7.2508,0.0041562,0.99551,-0.094541,83.518,-0.092475,0.094519,0.99122,-57.003
> view matrix models
> #4,0.99571,0.004623,0.092453,7.6518,0.0041562,0.99551,-0.094541,83.782,-0.092475,0.094519,0.99122,-54.044
> view matrix models
> #4,0.99571,0.004623,0.092453,7.5187,0.0041562,0.99551,-0.094541,84.266,-0.092475,0.094519,0.99122,-52.189
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.99982,0.01597,0.01027,25.651,-0.01493,0.99542,-0.094447,89.886,-0.011732,0.094276,0.99548,-76.531
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.99982,0.01597,0.01027,32.429,-0.01493,0.99542,-0.094447,85.333,-0.011732,0.094276,0.99548,-79.794
> view matrix models
> #4,0.99982,0.01597,0.01027,28.654,-0.01493,0.99542,-0.094447,83.708,-0.011732,0.094276,0.99548,-83.99
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.98996,-0.13038,0.054574,79.87,0.12982,0.99144,0.013642,9.1807,-0.055886,-0.0064202,0.99842,-28.834
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.98996,-0.13038,0.054574,80.736,0.12982,0.99144,0.013642,8.855,-0.055886,-0.0064202,0.99842,-24.307
> view matrix models
> #4,0.98996,-0.13038,0.054574,83.444,0.12982,0.99144,0.013642,8.0799,-0.055886,-0.0064202,0.99842,-23.236
> volume #1 level 0.07009
Fit molecule combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#4.1) to map
MT_25_r1.mrc (#1) using 6849 atoms
average map value = 0.1098, steps = 56
shifted from previous position = 4.89
rotated from previous position = 7.2 degrees
atoms outside contour = 892, contour level = 0.07009
Position of combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#4.1)
relative to MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99211614 0.11078790 -0.05857988 -28.86355008
-0.11096492 0.99382430 0.00023264 31.99801003
0.05824388 0.00626951 0.99828270 -19.93337840
Axis 0.02407852 -0.46596038 -0.88447790
Axis point 281.23035246 280.98292500 0.00000000
Rotation angle (degrees) 7.20143224
Shift along axis 2.02583602
Fit molecule combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#4.2) to map
MT_25_r1.mrc (#1) using 1182 atoms
average map value = 0.1098, steps = 112
shifted from previous position = 28.2
rotated from previous position = 78.8 degrees
atoms outside contour = 123, contour level = 0.07009
Position of combine_1v5r_tubulin_new_deletion_tail_ChimeraX.pdb (#4.2)
relative to MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.24919502 -0.50601696 0.82574129 210.66722882
0.12176062 0.86224363 0.49164038 -135.82756729
-0.96076854 -0.02197156 0.27647976 509.95053511
Axis -0.26177723 0.91054656 0.31996506
Axis point 429.96708401 0.00000000 140.78662588
Rotation angle (degrees) 78.81607008
Shift along axis -15.65885493
> volume #1 level 0.07609
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20210408GAS2GAR/remove bat particles python scripts/MDFF for 044/phenix
> realspace refine/last_frame_remove_HOT_real_space_refined_002.pdb"
Chain information for last_frame_remove_HOT_real_space_refined_002.pdb #5
---
Chain | Description
A | No description available
B | No description available
C | No description available
> ~select #4
Nothing selected
> select #5
7434 atoms, 7601 bonds, 942 residues, 1 model selected
> close #4
> close #2
> close #3
> view matrix models #5,1,0,0,12.295,0,1,0,47.983,0,0,1,-3.0976
> view matrix models #5,1,0,0,36.063,0,1,0,41.943,0,0,1,34.237
> view matrix models #5,1,0,0,33.047,0,1,0,45.353,0,0,1,45.798
> view matrix models #5,1,0,0,-2.5962,0,1,0,70.144,0,0,1,34.098
> view orient
> view matrix models #5,1,0,0,38.463,0,1,0,46.196,0,0,1,39.54
Fit molecule last_frame_remove_HOT_real_space_refined_002.pdb (#5) to map
MT_25_r1.mrc (#1) using 7434 atoms
average map value = 0.1163, steps = 68
shifted from previous position = 4.15
rotated from previous position = 0.864 degrees
atoms outside contour = 1028, contour level = 0.076087
Position of last_frame_remove_HOT_real_space_refined_002.pdb (#5) relative to
MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99991040 -0.01323040 -0.00203851 47.21183910
0.01324423 0.99988831 0.00692552 37.43096987
0.00194665 -0.00695190 0.99997394 43.64011752
Axis -0.46019127 -0.13215251 0.87792921
Axis point -2908.67940911 3993.00227968 0.00000000
Rotation angle (degrees) 0.86393196
Shift along axis 11.63986092
> transparency 50
> transparency 0
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20210408GAS2GAR/remove bat particles python scripts/MDFF for 044/phenix
> realspace refine/last_frame_remove_HOT_real_space_refined_002.pdb"
Chain information for last_frame_remove_HOT_real_space_refined_002.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20210408GAS2GAR/remove bat particles python scripts/MDFF for 044/phenix
> realspace refine/last_frame_remove_HOT_real_space_refined_002.pdb"
Chain information for last_frame_remove_HOT_real_space_refined_002.pdb #3
---
Chain | Description
A | No description available
B | No description available
C | No description available
> ~select #5
Nothing selected
> select #2
7434 atoms, 7601 bonds, 942 residues, 1 model selected
> view matrix models #2,1,0,0,-3.9964,0,1,0,27.858,0,0,1,-4.8921
> view matrix models #2,1,0,0,-27.562,0,1,0,15.338,0,0,1,-56.847
> transparency 50
> view matrix models #2,1,0,0,17.39,0,1,0,-0.39672,0,0,1,-60.006
> view matrix models #2,1,0,0,36.287,0,1,0,43.013,0,0,1,-53.948
> view matrix models #2,1,0,0,36.709,0,1,0,44.478,0,0,1,-40.925
> view matrix models #2,1,0,0,38.129,0,1,0,41.546,0,0,1,-42.12
> transparency 0
Fit molecule last_frame_remove_HOT_real_space_refined_002.pdb (#2) to map
MT_25_r1.mrc (#1) using 7434 atoms
average map value = 0.1101, steps = 64
shifted from previous position = 3.11
rotated from previous position = 1.24 degrees
atoms outside contour = 1191, contour level = 0.076087
Position of last_frame_remove_HOT_real_space_refined_002.pdb (#2) relative to
MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99978773 -0.02040682 -0.00283678 49.69299844
0.02042580 0.99976805 0.00682875 35.35381210
0.00269677 -0.00688524 0.99997266 -41.32641156
Axis -0.31578626 -0.12741859 0.94023590
Axis point -1345.02305769 1535.27865125 0.00000000
Rotation angle (degrees) 1.24422010
Shift along axis -59.05367447
> ~select #2
Nothing selected
> select #3
7434 atoms, 7601 bonds, 942 residues, 1 model selected
> view matrix models #3,1,0,0,-67.608,0,1,0,49.472,0,0,1,9.5067
> view matrix models #3,1,0,0,-103.71,0,1,0,3.9698,0,0,1,-51.24
> view orient
> view matrix models #3,1,0,0,50.198,0,1,0,45.408,0,0,1,-64.968
> view matrix models #3,1,0,0,67.596,0,1,0,57.931,0,0,1,89.069
> view matrix models #3,1,0,0,53.814,0,1,0,62.069,0,0,1,126.59
> view matrix models #3,1,0,0,40.833,0,1,0,44.589,0,0,1,124.02
Fit molecule last_frame_remove_HOT_real_space_refined_002.pdb (#3) to map
MT_25_r1.mrc (#1) using 7434 atoms
average map value = 0.1091, steps = 52
shifted from previous position = 2.47
rotated from previous position = 0.599 degrees
atoms outside contour = 1224, contour level = 0.076087
Position of last_frame_remove_HOT_real_space_refined_002.pdb (#3) relative to
MT_25_r1.mrc (#1) coordinates:
Matrix rotation and translation
0.99997329 -0.00684284 -0.00256806 45.44909275
0.00686184 0.99994861 0.00746231 39.17902021
0.00251686 -0.00747973 0.99996886 128.39461684
Axis -0.71482444 -0.24326148 0.65562937
Axis point 0.00000000 13497.33381418 -6531.68450841
Rotation angle (degrees) 0.59884026
Shift along axis 42.16041331
> transparency 50
> hide #!1 models
> ~select #3
Nothing selected
> show #!1 models
> hide #!1 models
> ui tool show "Segment Map"
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20220426/test2/pf.mrc"
Opened pf.mrc as #4, grid size 256,256,256, pixel 2.66, shown at level
0.00749, step 1, values float32
> volume #4 color #98986a
> surface dust #4 size 26.6
> volume #4 level 0.01756
> transparency #4.1 50
> volume #4 level 0.04325
> volume #4 level 0.04123
Segmenting pf.mrc, density threshold 0.041234
Showing 5 region surfaces
1196 watershed regions, grouped to 5 regions
Showing pf.seg - 5 regions, 5 surfaces
> select #6
6 models selected
> close #6
> volume #4 level 0.07649
> volume #4 level 0.06642
> volume #4 level 0.06591
> volume #4 level 0.0644
> volume #4 level 0.06289
> volume #4 level 0.05634
> volume #4 level 0.05181
> volume #4 level 0.0508
> volume #4 level 0.0503
> volume #4 level 0.04929
> volume #4 level 0.04778
> volume #4 level 0.04677
> volume #4 level 0.04577
> volume #4 level 0.04526
> volume #4 level 0.04325
> volume #4 level 0.04174
> volume #4 level 0.03972
> volume #4 level 0.0362
> volume #4 level 0.03569
> volume #4 level 0.03167
> volume #4 level 0.03015
> volume #4 level 0.02965
> volume #4 level 0.02915
> volume #4 level 0.02764
> volume #4 level 0.02814
> volume #4 level 0.03066
> volume #4 level 0.03116
> volume #4 level 0.03167
> volume #4 level 0.03267
> volume #4 level 0.03368
> transparency #1.1 0
> volume #1 level 0.04381
> transparency #1.1 50
> transparency #1.1 0
> transparency #1.1 50
> transparency #1.1 0
> transparency #1.1 50
> transparency #1.1 0
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20220426/test2/MT_16_r1.mrc"
Opened MT_16_r1.mrc as #6, grid size 256,256,256, pixel 2.66, shown at level
0.105, step 1, values float32
> volume #6 level 0.049
> close #6
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20220426/test2/MT_6_r1.mrc"
Opened MT_6_r1.mrc as #6, grid size 256,256,256, pixel 2.66, shown at level
0.107, step 1, values float32
> volume #6 level 0.03578
> close #6
> close #4
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20220426/third cycle/pf.mrc"
Opened pf.mrc as #4, grid size 256,256,256, pixel 2.66, shown at level
0.00248, step 1, values float32
> volume #4 color #b07bb0
> open "D:/MAC computer data/MACdata/CryoEM structure method for
> MT/20220426/third cycle/MT_23_r1.mrc"
Opened MT_23_r1.mrc as #6, grid size 256,256,256, pixel 2.66, shown at level
0.127, step 1, values float32
> volume #6 level 0.0784
> volume #6 color #c88c8c
> surface dust #4 size 26.6
> surface dust #6 size 26.6
> volume #4 level 0.01455
> volume #4 level 0.02614
> volume #4 level 0.04883
> transparency #6.1 50
Segmenting MT_25_r1.mrc, density threshold 0.043810
Only showing 60 of 79 regions.
Showing 60 of 79 region surfaces
13253 watershed regions, grouped to 79 regions
Showing MT_25_r1.seg - 79 regions, 60 surfaces
> select #7
61 models selected
> close #7
Segmenting MT_23_r1.mrc, density threshold 0.078405
Only showing 60 of 91 regions.
Showing 60 of 91 region surfaces
9841 watershed regions, grouped to 91 regions
Showing MT_23_r1.seg - 91 regions, 60 surfaces
> view orient
> ui mousemode right select
Drag select of 13022, 18342 of 24320 triangles, 12999, 13003, 13044, 13005,
13039, 6512 of 18256 triangles, 13040, 13004, 17782 of 17896 triangles, 13002,
13028, 12527 of 17748 triangles, 13031, 13035, 13064, 13057, 5396 of 18000
triangles, 13055, 13051, 13063, 12996, 13010, 13045, 13008, 13015, 1075 of
17900 triangles, 13006, 5134 of 17952 triangles, 13056, 13019, 13023, 13061,
2381 of 18256 triangles, 13037, 13052, 13041, 13060, 18696 of 18720 triangles,
13024, 13020, 3944 of 18232 triangles, 13014, 11594 of 18612 triangles, 13046,
9489 of 18604 triangles, 13026, 13043, 13062, 13038, 13016
Deleted 40 regions
Drag select of 13000, 13021, 8575 of 17732 triangles, 13012, 13011, 12947 of
18916 triangles, 13001, 10671 of 17816 triangles, 13047, 13033, 17342 of 18436
triangles, 13017, 13053, 13065, 13029, 13059, 809 of 18392 triangles, 13036,
142 of 18676 triangles, 13058, 13042, 13030, 13025, 12997, 4 residues
Drag select of 13012, 8570 of 18812 triangles, 13047, 245 of 17752 triangles,
13017, 4585 of 18176 triangles, 13053, 11067 of 18540 triangles, 13065, 13029,
13058, 4557 of 18016 triangles, 13042, 13030, 2934 of 17952 triangles, 13025,
18107 of 18308 triangles, 12997, 4846 of 18260 triangles
Deleted 11 regions
Drag select of 13021
Deleted 1 regions
Drag select of 13000, 1479 of 21064 triangles, 13033, 6035 of 18436 triangles
Deleted 2 regions
Drag select of 13011, 9986 of 18916 triangles, 13001, 4881 of 17816 triangles
Deleted 2 regions
Drag select of 13059, 13007, 13036, 13013, 621 atoms, 2811 residues, 549 bonds
Grouped 4 regions
> select #7
2 models selected
> ~select #7
Nothing selected
> color #7 #b8b8b8 transparency 0
> color #7 #ffaa7f transparency 0
No map chosen to save
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3rc202111110135 (2021-11-11)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 NVIDIA 512.13
OpenGL renderer: NVIDIA GeForce RTX 3060 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: XPS 8940
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 16,825,819,136
MaxProcessMemory: 137,438,953,344
CPU: 16 Intel(R) Core(TM) i7-10700 CPU @ 2.90GHz
OSLanguage: ja-JP
Locale: ('en_US', 'cp932')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.1.5
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111110135
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.5.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.2
ParmEd: 3.2.0
parso: 0.8.2
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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1.3rc