Opened 3 years ago

Closed 3 years ago

#6713 closed defect (can't reproduce)

Crash when starting RealSense camera, stack overflow getting VR saved settings

Reported by: goddard@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: VR Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.22000
ChimeraX Version: 1.4.dev202204260114 (2022-04-26 01:14:38 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.

Windows fatal exception: stack overflow

Thread 0x00004574 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004e1c (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003bbc (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001c70 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000d6c (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002fcc (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004adc (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a64 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000d68 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000d58 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000d64 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000d60 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004658 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004398 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004634 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000468c (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004644 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004628 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004b18 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000467c (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004b40 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004624 (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000462c (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\threading.py", line 930 in _bootstrap

Current thread 0x0000293c (most recent call first):
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\ast.py", line 50 in parse
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\ast.py", line 62 in literal_eval
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\configfile.py", line 491 in convert_from_string
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\configfile.py", line 339 in __getattr__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\settings.py", line 171 in __getattr__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\configfile.py", line 302 in __init__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\settings.py", line 159 in __init__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1260 in _saved_settings
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1220 in _initial_room_position
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1215 in _create_camera_model
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1171 in __init__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 623 in enable_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 232 in vr_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
  File "C:\Users\goddard\AppData\Local\UCSF\ChimeraX\1.4\site-packages\chimerax\realsense\depth_video.py", line 173 in _update_image
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 134 in invoke
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 217 in _activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 186 in activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 354 in activate_trigger
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 271 in check_for_drawing_change
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 620 in drawing_bounds
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 688 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 278 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1216 in _create_camera_model
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1171 in __init__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 623 in enable_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 232 in vr_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
  File "C:\Users\goddard\AppData\Local\UCSF\ChimeraX\1.4\site-packages\chimerax\realsense\depth_video.py", line 173 in _update_image
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 134 in invoke
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 217 in _activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 186 in activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 354 in activate_trigger
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 271 in check_for_drawing_change
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 620 in drawing_bounds
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 688 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 278 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1216 in _create_camera_model
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1171 in __init__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 623 in enable_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 232 in vr_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
  File "C:\Users\goddard\AppData\Local\UCSF\ChimeraX\1.4\site-packages\chimerax\realsense\depth_video.py", line 173 in _update_image
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 134 in invoke
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 217 in _activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 186 in activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 354 in activate_trigger
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 271 in check_for_drawing_change
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 620 in drawing_bounds
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 688 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 278 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1216 in _create_camera_model
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1171 in __init__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 623 in enable_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 232 in vr_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
  File "C:\Users\goddard\AppData\Local\UCSF\ChimeraX\1.4\site-packages\chimerax\realsense\depth_video.py", line 173 in _update_image
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 134 in invoke
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 217 in _activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 186 in activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 354 in activate_trigger
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 271 in check_for_drawing_change
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 620 in drawing_bounds
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 688 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 278 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1216 in _create_camera_model
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1171 in __init__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 623 in enable_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 232 in vr_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
  File "C:\Users\goddard\AppData\Local\UCSF\ChimeraX\1.4\site-packages\chimerax\realsense\depth_video.py", line 173 in _update_image
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 134 in invoke
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 217 in _activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 186 in activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 354 in activate_trigger
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 271 in check_for_drawing_change
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 620 in drawing_bounds
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 688 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 278 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1216 in _create_camera_model
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1171 in __init__
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 623 in enable_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 232 in vr_room_camera
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897 in run
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
  File "C:\Users\goddard\AppData\Local\UCSF\ChimeraX\1.4\site-packages\chimerax\realsense\depth_video.py", line 173 in _update_image
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 134 in invoke
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 217 in _activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 186 in activate
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\triggerset.py", line 354 in activate_trigger
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 271 in check_for_drawing_change
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\graphics\view.py", line 620 in drawing_bounds
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 688 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\core\models.py", line 278 in add
  File "C:\Program Files\ChimeraX-Mar-26-2022\bin\lib\site-packages\chimerax\vive\vr.py", line 1216 in _create_camera_model
  ...
===== Log before crash start =====
UCSF ChimeraX version: 1.4.dev202204260114 (2022-04-26)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 1ivo format mmcif fromDatabase pdb

1ivo title:  
Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor
Extracellular Domains. [more info...]  
  
Chain information for 1ivo #1  
---  
Chain | Description | UniProt  
A B | Epidermal Growth Factor Receptor | EGFR_HUMAN  
C D | Epidermal growth factor | EGF_HUMAN  
  
Non-standard residues in 1ivo #1  
---  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose  
  

> vr true

started SteamVR rendering  

> color bychain

> open 7mn5

Summary of feedback from opening 7mn5 fetched from pdb  
---  
notes | Fetching compressed mmCIF 7mn5 from
http://files.rcsb.org/download/7mn5.cif  
Fetching CCD BMA from http://ligand-expo.rcsb.org/reports/B/BMA/BMA.cif  
Fetching CCD MAN from http://ligand-expo.rcsb.org/reports/M/MAN/MAN.cif  
  
7mn5 title:  
Structure of the HER2/HER3/NRG1b Heterodimer Extracellular Domain [more
info...]  
  
Chain information for 7mn5 #2  
---  
Chain | Description | UniProt  
A | Receptor tyrosine-protein kinase erbB-3 | ERBB3_HUMAN  
B | Receptor tyrosine-protein kinase erbB-2,Maltose/maltodextrin-binding
periplasmic protein | MALE_ECOLI  
H | Isoform 6 of Pro-neuregulin-1, membrane-bound isoform | NRG1-6_HUMAN  
  
Non-standard residues in 7mn5 #2  
---  
BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose)  
MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose)  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> hide #1 models

> color #!2 bychain

> show #!2 atoms

> color #!2 byhetero

> color #!2 bypolymer

> open 7mn6

Summary of feedback from opening 7mn6 fetched from pdb  
---  
note | Fetching compressed mmCIF 7mn6 from
http://files.rcsb.org/download/7mn6.cif  
  
7mn6 title:  
Structure of the HER2 S310F/HER3/NRG1b Heterodimer Extracellular Domain [more
info...]  
  
Chain information for 7mn6 #3  
---  
Chain | Description | UniProt  
A | Receptor tyrosine-protein kinase erbB-3 | ERBB3_HUMAN  
B | Receptor tyrosine-protein kinase erbB-2,Maltose/maltodextrin-binding
periplasmic protein | MALE_ECOLI  
H | Isoform 6 of Pro-neuregulin-1, membrane-bound isoform | NRG1-6_HUMAN  
  
Non-standard residues in 7mn6 #3  
---  
BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose)  
MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose)  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> open 7mn8

Summary of feedback from opening 7mn8 fetched from pdb  
---  
note | Fetching compressed mmCIF 7mn8 from
http://files.rcsb.org/download/7mn8.cif  
  
7mn8 title:  
Structure of the HER2/HER3/NRG1b Heterodimer Extracellular Domain bound to
Trastuzumab Fab [more info...]  
  
Chain information for 7mn8 #4  
---  
Chain | Description | UniProt  
A | Receptor tyrosine-protein kinase erbB-3 | ERBB3_HUMAN  
B | Receptor tyrosine-protein kinase erbB-2,Maltose/maltodextrin-binding
periplasmic protein | MALE_ECOLI  
C | Trastuzumab Fab Light Chain |  
D | Trastuzumab Fab Heavy Chain |  
H | Isoform 6 of Pro-neuregulin-1, membrane-bound isoform | NRG1-6_HUMAN  
  
Non-standard residues in 7mn8 #4  
---  
BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose)  
MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose)  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> hide #!4 models

> hide #!3 models

> color #!2 byhetero

> hide #!2 models

> show #!3 models

> color #!3 bypolymer

> color #!3 byhetero

> show #!3 atoms

> color #!3 bychain

> color #!3 byhetero

> color :310 red

> color :310 lime

> color #!3 bychain

> color #!3 byhetero

> color /B :310 lime

> hide #!3 models

> show #!4 models

> color #!4 bypolymer

> color #!4 bychain

> show #!4 cartoons

> hide #!4 atoms

> show #!4 atoms

> style #!4 stick

Changed 12947 atom styles  

> color #!4 byhetero

> color /B :310 lime

> vr false

> save C:\Users\goddard/Desktop/her.cxs

> vr true

started SteamVR rendering  

> hide #!4 models

> show #!2 models

> hide #!2 models

> show #!3 models

> realsense true

RealSense camera model #5  

> windowsize 960 540

> vr roomCamera true fieldOfView 69.4 tracker true

> ui windowfill toggle

> show #!3 surfaces

> lighting soft

> ui windowfill toggle

> lighting flat

> lighting full

> lighting soft

> lighting simple

> hide #!3 models

> show #!3 models

> hide #!3 models

> hide #5 models

> show #5 models

> show #!3 models

> close

> realsense true

> vr roomCamera true fieldOfView 69.4


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4.dev202204260114 (2022-04-26)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 511.65
OpenGL renderer: NVIDIA GeForce RTX 3090/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.cp1252
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: windows

Manufacturer: HP
Model: OMEN 30L Desktop GT13-0xxx
OS: Microsoft Windows 11 Pro (Build 22000)
Memory: 68,576,903,168
MaxProcessMemory: 137,438,953,344
CPU: 20 Intel(R) Core(TM) i9-10850K CPU @ 3.60GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.38.2
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.3
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4.dev202204260114
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-RealSense: 1.8
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.16.5
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.2
    funcparserlib: 1.0.0a1
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.8
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    pyrealsense2: 2.50.0.3812
    python-dateutil: 2.8.2
    pytz: 2022.1
    pywin32: 303
    pyzmq: 22.3.0
    qtconsole: 5.3.0
    QtPy: 2.0.1
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Tom Goddard, 3 years ago

Component: Unassigned → VR
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash when starting RealSense camera

Zach and I were trying VR in the vizvault on the Windows 11 machine minsky and Zach closed the session then tried starting the RealSense camera with "real on" and it crashed. Probably something weird with RealSense.

comment:2 by Tom Goddard, 3 years ago

Resolution: → can't reproduce
Status: assigned → closed
Summary: Crash when starting RealSense camera → Crash when starting RealSense camera, stack overflow getting VR saved settings

Very strange that it gave a stack overflow in Python core ast module in literal_eval() reading some short VR settings strings (room camera position probably).

I don't think this is worth investigating unless we see it again.

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