![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#6721 closed defect (duplicate)
Crash in garbage collection during new object allocation
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [90300]
Path: /Users/USER/Desktop/ChimeraX-1.0.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.0.0 (1.0.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [90300]
User ID: 503
Date/Time: 2022-04-27 13:54:29.638 +0100
OS Version: Mac OS X 10.13.6 (17G14042)
Report Version: 12
Anonymous UUID: 98C07AF5-F27E-2B70-D3E7-0F94C7F480CB
Time Awake Since Boot: 20000000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 0000000105e47000-0000000105e48000 [ 4K] r-x/r-x SM=COW /Users/USER/Desktop/ChimeraX-1.0.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff7eb5db66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff7ed28080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff7ea6b6fe raise + 26
3 libsystem_platform.dylib 0x00007fff7ed1bf5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x0000000105ebc990 tupletraverse + 64
6 org.python.python 0x0000000105fa2933 collect + 2083
7 org.python.python 0x0000000105fa30de _PyObject_GC_Alloc + 286
8 org.python.python 0x0000000105fa31b4 _PyObject_GC_New + 20
9 org.python.python 0x0000000105ebcb5c tuple_iter + 60
10 org.python.python 0x0000000105e5c068 PyObject_GetIter + 24
11 org.python.python 0x0000000105f42daf _PyEval_EvalFrameDefault + 24015
12 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
13 org.python.python 0x0000000105e71377 _PyFunction_FastCallDict + 455
14 org.python.python 0x0000000105e736fb object_vacall + 619
15 org.python.python 0x0000000105e737ed _PyObject_CallMethodIdObjArgs + 173
16 org.python.python 0x0000000105f670c1 PyImport_ImportModuleLevelObject + 2017
17 org.python.python 0x0000000105f41f5e _PyEval_EvalFrameDefault + 20350
18 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
19 org.python.python 0x0000000105e71377 _PyFunction_FastCallDict + 455
20 org.python.python 0x0000000105e72883 _PyObject_Call_Prepend + 131
21 org.python.python 0x0000000105ec5e3f slot_tp_init + 175
22 org.python.python 0x0000000105ec1534 type_call + 292
23 org.python.python 0x0000000105e716df _PyObject_FastCallKeywords + 575
24 org.python.python 0x0000000105f46b5d call_function + 765
25 org.python.python 0x0000000105f4383e _PyEval_EvalFrameDefault + 26718
26 org.python.python 0x0000000105e808c8 gen_send_ex + 248
27 org.python.python 0x0000000105e5bf58 PySequence_Tuple + 248
28 org.python.python 0x0000000105ebcc79 tuple_new + 153
29 org.python.python 0x0000000105ec143c type_call + 44
30 org.python.python 0x0000000105e716df _PyObject_FastCallKeywords + 575
31 org.python.python 0x0000000105f46b5d call_function + 765
32 org.python.python 0x0000000105f4383e _PyEval_EvalFrameDefault + 26718
33 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
34 org.python.python 0x0000000105f46b64 call_function + 772
35 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
36 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
37 org.python.python 0x0000000105e7277d _PyObject_FastCall_Prepend + 141
38 org.python.python 0x0000000105ecbfe4 slot_mp_subscript + 196
39 org.python.python 0x0000000105f3e506 _PyEval_EvalFrameDefault + 5414
40 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
41 org.python.python 0x0000000105f46b64 call_function + 772
42 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
43 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
44 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
45 org.python.python 0x0000000105f46b64 call_function + 772
46 org.python.python 0x0000000105f3d554 _PyEval_EvalFrameDefault + 1396
47 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
48 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
49 org.python.python 0x0000000105f46b64 call_function + 772
50 org.python.python 0x0000000105f3d554 _PyEval_EvalFrameDefault + 1396
51 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
52 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
53 org.python.python 0x0000000105f46b64 call_function + 772
54 org.python.python 0x0000000105f437a7 _PyEval_EvalFrameDefault + 26567
55 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
56 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
57 org.python.python 0x0000000105f46b64 call_function + 772
58 org.python.python 0x0000000105f3d554 _PyEval_EvalFrameDefault + 1396
59 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
60 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
61 org.python.python 0x0000000105f46b64 call_function + 772
62 org.python.python 0x0000000105f437a7 _PyEval_EvalFrameDefault + 26567
63 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
64 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
65 org.python.python 0x0000000105f46b64 call_function + 772
66 org.python.python 0x0000000105f3d554 _PyEval_EvalFrameDefault + 1396
67 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
68 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
69 org.python.python 0x0000000105f46b64 call_function + 772
70 org.python.python 0x0000000105f3d554 _PyEval_EvalFrameDefault + 1396
71 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
72 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
73 org.python.python 0x0000000105f46b64 call_function + 772
74 org.python.python 0x0000000105f3d554 _PyEval_EvalFrameDefault + 1396
75 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
76 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
77 org.python.python 0x0000000105f46b64 call_function + 772
78 org.python.python 0x0000000105f3d554 _PyEval_EvalFrameDefault + 1396
79 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
80 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
81 org.python.python 0x0000000105f46b64 call_function + 772
82 org.python.python 0x0000000105f3d554 _PyEval_EvalFrameDefault + 1396
83 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
84 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
85 org.python.python 0x0000000105f46b64 call_function + 772
86 org.python.python 0x0000000105f4383e _PyEval_EvalFrameDefault + 26718
87 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
88 org.python.python 0x0000000105f46b64 call_function + 772
89 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
90 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
91 org.python.python 0x0000000105f46b64 call_function + 772
92 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
93 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
94 org.python.python 0x0000000105f46b64 call_function + 772
95 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
96 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
97 org.python.python 0x0000000105e72883 _PyObject_Call_Prepend + 131
98 org.python.python 0x0000000105e719d8 PyObject_Call + 136
99 QtCore.so 0x00000001144b5f17 PyQtSlot::call(_object*, _object*) const + 39
100 QtCore.so 0x00000001144b5e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
101 QtCore.so 0x00000001144b6925 PyQtSlotProxy::unislot(void**) + 85
102 QtCore.so 0x00000001144b689a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
103 QtCore 0x0000000113fab2dd QMetaObject::activate(QObject*, int, int, void**) + 1773
104 QtCore 0x0000000113fb3392 QTimer::timerEvent(QTimerEvent*) + 98
105 QtCore.so 0x00000001143ac028 sipQTimer::timerEvent(QTimerEvent*) + 120
106 QtCore 0x0000000113fa3c56 QObject::event(QEvent*) + 102
107 QtCore.so 0x00000001143abe9b sipQTimer::event(QEvent*) + 187
108 QtWidgets 0x00000001130b970d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
109 QtWidgets 0x00000001130bab12 QApplication::notify(QObject*, QEvent*) + 594
110 QtWidgets.so 0x0000000112c793ca sipQApplication::notify(QObject*, QEvent*) + 234
111 QtCore 0x0000000113f7a4c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
112 QtCore 0x0000000113fd3adf QTimerInfoList::activateTimers() + 991
113 libqcocoa.dylib 0x000000011dadf032 0x11daaa000 + 217138
114 com.apple.CoreFoundation 0x00007fff56acd691 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
115 com.apple.CoreFoundation 0x00007fff56b87c8c __CFRunLoopDoSource0 + 108
116 com.apple.CoreFoundation 0x00007fff56ab00f0 __CFRunLoopDoSources0 + 208
117 com.apple.CoreFoundation 0x00007fff56aaf56d __CFRunLoopRun + 1293
118 com.apple.CoreFoundation 0x00007fff56aaedd3 CFRunLoopRunSpecific + 483
119 com.apple.HIToolbox 0x00007fff55d99d96 RunCurrentEventLoopInMode + 286
120 com.apple.HIToolbox 0x00007fff55d99b06 ReceiveNextEventCommon + 613
121 com.apple.HIToolbox 0x00007fff55d99884 _BlockUntilNextEventMatchingListInModeWithFilter + 64
122 com.apple.AppKit 0x00007fff54046a3b _DPSNextEvent + 2085
123 com.apple.AppKit 0x00007fff547dce34 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044
124 com.apple.AppKit 0x00007fff5403b84d -[NSApplication run] + 764
125 libqcocoa.dylib 0x000000011dadfde3 0x11daaa000 + 220643
126 QtCore 0x0000000113f75adf QEventLoop::exec(QFlags) + 431
127 QtCore 0x0000000113f7aad2 QCoreApplication::exec() + 130
128 QtWidgets.so 0x0000000112d687d2 meth_QApplication_exec_(_object*, _object*) + 82
129 org.python.python 0x0000000105e72392 _PyMethodDef_RawFastCallKeywords + 226
130 org.python.python 0x0000000105e718b9 _PyCFunction_FastCallKeywords + 41
131 org.python.python 0x0000000105f46af0 call_function + 656
132 org.python.python 0x0000000105f437a7 _PyEval_EvalFrameDefault + 26567
133 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
134 org.python.python 0x0000000105f46b64 call_function + 772
135 org.python.python 0x0000000105f437a7 _PyEval_EvalFrameDefault + 26567
136 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
137 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
138 org.python.python 0x0000000105f46b64 call_function + 772
139 org.python.python 0x0000000105f4383e _PyEval_EvalFrameDefault + 26718
140 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
141 org.python.python 0x0000000105f3cf40 PyEval_EvalCode + 48
142 org.python.python 0x0000000105f3a4d7 builtin_exec + 583
143 org.python.python 0x0000000105e72545 _PyMethodDef_RawFastCallKeywords + 661
144 org.python.python 0x0000000105e718b9 _PyCFunction_FastCallKeywords + 41
145 org.python.python 0x0000000105f46af0 call_function + 656
146 org.python.python 0x0000000105f4383e _PyEval_EvalFrameDefault + 26718
147 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
148 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
149 org.python.python 0x0000000105f46b64 call_function + 772
150 org.python.python 0x0000000105f4383e _PyEval_EvalFrameDefault + 26718
151 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
152 org.python.python 0x0000000105e71377 _PyFunction_FastCallDict + 455
153 org.python.python 0x0000000105fa1a83 pymain_run_module + 147
154 org.python.python 0x0000000105fa0b6c pymain_main + 5900
155 org.python.python 0x0000000105f9f453 Py_Main + 51
156 edu.ucsf.cgl.ChimeraX 0x0000000105e47dc8 main + 120
157 libdyld.dylib 0x00007fff7ea0d015 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff7eb5da16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ed26589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.7.dylib 0x000000010792dc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff7eb5da16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ed26589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.7.dylib 0x000000010792dc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff7eb5da16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ed26589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.7.dylib 0x000000010792dc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56ab0405 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff56aaf757 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56aaedd3 CFRunLoopRunSpecific + 483
5 com.apple.AppKit 0x00007fff54183fc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c1af 0x114aa1000 + 35303855
4 QtWebEngineCore 0x0000000116bfffdd 0x114aa1000 + 34992093
5 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
6 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff7eb5ebea kevent + 10
1 QtWebEngineCore 0x0000000116f0d929 0x114aa1000 + 38193449
2 QtWebEngineCore 0x0000000116f0ac3d 0x114aa1000 + 38181949
3 QtWebEngineCore 0x0000000116cc1c5c 0x114aa1000 + 35785820
4 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
5 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
6 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
7 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff7eb5ebea kevent + 10
1 QtWebEngineCore 0x0000000116f0d929 0x114aa1000 + 38193449
2 QtWebEngineCore 0x0000000116f0ac3d 0x114aa1000 + 38181949
3 QtWebEngineCore 0x0000000116cc1c44 0x114aa1000 + 35785796
4 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
5 QtWebEngineCore 0x0000000116c6a9f4 0x114aa1000 + 35428852
6 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 8:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c3a1 0x114aa1000 + 35304353
4 QtWebEngineCore 0x0000000116c63ca8 0x114aa1000 + 35400872
5 QtWebEngineCore 0x0000000116c645db 0x114aa1000 + 35403227
6 QtWebEngineCore 0x0000000116c64244 0x114aa1000 + 35402308
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 9:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c3a1 0x114aa1000 + 35304353
4 QtWebEngineCore 0x0000000116c63ca8 0x114aa1000 + 35400872
5 QtWebEngineCore 0x0000000116c645db 0x114aa1000 + 35403227
6 QtWebEngineCore 0x0000000116c641b4 0x114aa1000 + 35402164
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 10:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c3a1 0x114aa1000 + 35304353
4 QtWebEngineCore 0x0000000116c63ca8 0x114aa1000 + 35400872
5 QtWebEngineCore 0x0000000116c645db 0x114aa1000 + 35403227
6 QtWebEngineCore 0x0000000116c641b4 0x114aa1000 + 35402164
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 11:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff7eb5ebea kevent + 10
1 QtWebEngineCore 0x0000000116f0d929 0x114aa1000 + 38193449
2 QtWebEngineCore 0x0000000116f0ac3d 0x114aa1000 + 38181949
3 QtWebEngineCore 0x0000000116cc1c44 0x114aa1000 + 35785796
4 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
5 QtWebEngineCore 0x000000011658efa4 0x114aa1000 + 28237732
6 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 12:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c1af 0x114aa1000 + 35303855
4 QtWebEngineCore 0x0000000116c63c9a 0x114aa1000 + 35400858
5 QtWebEngineCore 0x0000000116c6433f 0x114aa1000 + 35402559
6 QtWebEngineCore 0x0000000116c641e4 0x114aa1000 + 35402212
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 13:: CompositorTileWorker1/71427
0 libsystem_kernel.dylib 0x00007fff7eb5da16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ed26589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x0000000116cb9f28 0x114aa1000 + 35753768
3 QtWebEngineCore 0x0000000117c42628 0x114aa1000 + 52041256
4 QtWebEngineCore 0x0000000116c7a614 0x114aa1000 + 35493396
5 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
6 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 14:: AudioThread
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c1af 0x114aa1000 + 35303855
4 QtWebEngineCore 0x0000000116bfffdd 0x114aa1000 + 34992093
5 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
6 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c1af 0x114aa1000 + 35303855
4 QtWebEngineCore 0x0000000116bfffdd 0x114aa1000 + 34992093
5 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
6 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 16:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116bfffd2 0x114aa1000 + 34992082
4 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
5 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
6 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
7 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 17:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff7eb5ebea kevent + 10
1 QtWebEngineCore 0x0000000116f0d929 0x114aa1000 + 38193449
2 QtWebEngineCore 0x0000000116f0ac3d 0x114aa1000 + 38181949
3 QtWebEngineCore 0x0000000116cc1c5c 0x114aa1000 + 35785820
4 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
5 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
6 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
7 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 18:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c1af 0x114aa1000 + 35303855
4 QtWebEngineCore 0x0000000116c63c9a 0x114aa1000 + 35400858
5 QtWebEngineCore 0x0000000116c645db 0x114aa1000 + 35403227
6 QtWebEngineCore 0x0000000116c642a4 0x114aa1000 + 35402404
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c1af 0x114aa1000 + 35303855
4 QtWebEngineCore 0x0000000116bfffdd 0x114aa1000 + 34992093
5 QtWebEngineCore 0x0000000116c29005 0x114aa1000 + 35160069
6 QtWebEngineCore 0x0000000116c7b93c 0x114aa1000 + 35498300
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 20:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c3a1 0x114aa1000 + 35304353
4 QtWebEngineCore 0x0000000116c63ca8 0x114aa1000 + 35400872
5 QtWebEngineCore 0x0000000116c645db 0x114aa1000 + 35403227
6 QtWebEngineCore 0x0000000116c64244 0x114aa1000 + 35402308
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 21:
0 libsystem_pthread.dylib 0x00007fff7ed24bdc start_wqthread + 0
1 ??? 0x0000000100000038 0 + 4294967352
Thread 22:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff7eb541fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7eb53714 mach_msg + 60
2 QtWebEngineCore 0x0000000116c4c2ad 0x114aa1000 + 35304109
3 QtWebEngineCore 0x0000000116c4c3a1 0x114aa1000 + 35304353
4 QtWebEngineCore 0x0000000116c63ca8 0x114aa1000 + 35400872
5 QtWebEngineCore 0x0000000116c645db 0x114aa1000 + 35403227
6 QtWebEngineCore 0x0000000116c64244 0x114aa1000 + 35402308
7 QtWebEngineCore 0x0000000116cbb697 0x114aa1000 + 35759767
8 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 23:
0 libsystem_kernel.dylib 0x00007fff7eb5da16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ed26589 _pthread_cond_wait + 732
2 org.python.python 0x0000000105f8b04f PyThread_acquire_lock_timed + 351
3 org.python.python 0x0000000105fd695f acquire_timed + 111
4 org.python.python 0x0000000105fd66dc lock_PyThread_acquire_lock + 44
5 org.python.python 0x0000000105e72582 _PyMethodDef_RawFastCallKeywords + 722
6 org.python.python 0x0000000105e78581 _PyMethodDescr_FastCallKeywords + 81
7 org.python.python 0x0000000105f46b8e call_function + 814
8 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
9 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
10 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
11 org.python.python 0x0000000105f46b64 call_function + 772
12 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
13 org.python.python 0x0000000105f479bc _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000105e71879 _PyFunction_FastCallKeywords + 217
15 org.python.python 0x0000000105f46b64 call_function + 772
16 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
18 org.python.python 0x0000000105f46b64 call_function + 772
19 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
20 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
21 org.python.python 0x0000000105f46b64 call_function + 772
22 org.python.python 0x0000000105f4378a _PyEval_EvalFrameDefault + 26538
23 org.python.python 0x0000000105e71d61 function_code_fastcall + 177
24 org.python.python 0x0000000105e72883 _PyObject_Call_Prepend + 131
25 org.python.python 0x0000000105e719d8 PyObject_Call + 136
26 org.python.python 0x0000000105fd7207 t_bootstrap + 71
27 org.python.python 0x0000000105f8acb9 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff7ed25661 _pthread_body + 340
29 libsystem_pthread.dylib 0x00007fff7ed2550d _pthread_start + 377
30 libsystem_pthread.dylib 0x00007fff7ed24bf9 thread_start + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fffb7440380 rcx: 0x00000001062dda48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00000001062dda80 rsp: 0x00000001062dda48
r8: 0x00000001062ddf48 r9: 0x000000012b861050 r10: 0x00007fffb74403c8 r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x00000001733a2990 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff7eb5db66 rfl: 0x0000000000000286 cr2: 0x0000000113d45008
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff7ed34000 - 0x7fff7ed3bff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib
0x7fff7ed3c000 - 0x7fff7ed50ff7 libsystem_trace.dylib (829.70.2) /usr/lib/system/libsystem_trace.dylib
0x7fff7ed52000 - 0x7fff7ed57ff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff7ed58000 - 0x7fff7ed85fff libxpc.dylib (1205.70.16) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 16587
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 841177563
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=654.3M resident=0K(0%) swapped_out_or_unallocated=654.3M(100%)
Writable regions: Total=6.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=6.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 3
Activity Tracing 256K 2
CG backing stores 48.6M 6
CG image 176K 14
CoreAnimation 128K 12
CoreGraphics 8K 2
CoreImage 44K 6
CoreUI image data 5392K 35
CoreUI image file 180K 4
Foundation 4K 2
Kernel Alloc Once 8K 2
MALLOC 5.3G 942
MALLOC guard page 48K 12
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
OpenGL GLSL 512K 7
PROTECTED_MEMORY 4K 2
STACK GUARD 92K 24
Stack 151.7M 27
Stack Guard 56.0M 2
VM_ALLOCATE 475.2M 408
VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated)
__DATA 42.2M 447
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 218.1M 137
__TEXT 436.1M 425
__UNICODE 560K 2
mapped file 69.3M 35
shared memory 684K 15
=========== ======= =======
TOTAL 6.8G 2553
TOTAL, minus reserved VM space 6.7G 2553
Log:
UCSF ChimeraX version: 1.0 (2020-06-04)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/nturner/Desktop/ScMIND_CENP-
> QU/ScMIND_CENPQU_e9eec_unrelaxed_rank_1_model_5.pdb
Chain information for ScMIND_CENPQU_e9eec_unrelaxed_rank_1_model_5.pdb #1
---
Chain | Description
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
OpenGL version: 4.1 ATI-1.68.25
OpenGL renderer: AMD Radeon Pro 575 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac18,3
Processor Name: Intel Core i5
Processor Speed: 3.5 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 16 GB
Boot ROM Version: 428.0.0.0.0
SMC Version (system): 2.41f1
Software:
System Software Overview:
System Version: macOS 10.13.6 (17G14042)
Kernel Version: Darwin 17.7.0
Time since boot: 237 days 1:22
Graphics/Displays:
Radeon Pro 575:
Chipset Model: Radeon Pro 575
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Dynamic, Max): 4096 MB
Vendor: AMD (0x1002)
Device ID: 0x67df
Revision ID: 0x00c4
ROM Revision: 113-D000AA-931
VBIOS Version: 113-D0001A1P-025
EFI Driver Version: 01.00.931
Metal: Supported, feature set macOS GPUFamily1 v3
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: 5120 x 2880 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection during new object allocation |
comment:2 by , 3 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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