hide dust shortcut: local variable 'maps' referenced before assignment

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.4 (2021-05-14 07:23:00 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.4 (2021-05-14)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

Error installing 'ChimeraX-UI==1.2.1'  

Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Collecting ChimeraX-AddH==2.1.3  
Downloading
https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxaddh/releases/2.1.3/ChimeraX_AddH-2.1.3-py3-none-
any.whl (30 kB)  
Requirement already satisfied: ChimeraX-HKCage==1.3 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (1.3)  
Requirement already satisfied: ChimeraX-ISOLDE==1.2.2 in
/Users/kimoloyola/Library/Application Support/ChimeraX/1.2/site-packages
(1.2.2)  
Requirement already satisfied: ChimeraX-Maestro==1.8.1 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (1.8.1)  
Collecting SEQCROW==1.3.2  
Downloading
https://cxtoolshed.rbvi.ucsf.edu/media/seqcrow/releases/1.3.2/SEQCROW-1.3.2-py3-none-
any.whl (2.6 MB)  
Collecting ChimeraX-UI==1.2.1  
Downloading
https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxui/releases/1.2.1/ChimeraX_UI-1.2.1-py3-none-
any.whl (1.1 MB)  
Requirement already satisfied: ChimeraX-Hbonds~=2.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-AddH==2.1.3) (2.1)  
Requirement already satisfied: ChimeraX-AtomSearch~=2.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-AddH==2.1.3) (2.0)  
Requirement already satisfied: ChimeraX-Core~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-AddH==2.1.3) (1.2.4)  
Requirement already satisfied: ChimeraX-Atomic~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-AddH==2.1.3) (1.13.3)  
Requirement already satisfied: ChimeraX-mmCIF~=2.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-AddH==2.1.3) (2.3)  
Requirement already satisfied: ChimeraX-Geometry~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-AddH==2.1.3) (1.1)  
Requirement already satisfied: ChimeraX-Markers~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-HKCage==1.3) (1.0)  
Requirement already satisfied: ChimeraX-AtomicLibrary~=3.1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-ISOLDE==1.2.2) (3.1.3)  
Requirement already satisfied: ChimeraX-Clipper~=0.16.0 in
/Users/kimoloyola/Library/Application Support/ChimeraX/1.2/site-packages (from
ChimeraX-ISOLDE==1.2.2) (0.16.1)  
Requirement already satisfied: ChimeraX-Arrays~=1.0.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-ISOLDE==1.2.2) (1.0)  
Requirement already satisfied: ChimeraX-DataFormats~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-Maestro==1.8.1) (1.1)  
Requirement already satisfied: ChimeraX-OpenCommand~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-Maestro==1.8.1) (1.5)  
Requirement already satisfied: ChimeraX-MouseModes~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-UI==1.2.1) (1.1)  
Requirement already satisfied: ChimeraX-Graphics~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-UI==1.2.1) (1.0)  
Requirement already satisfied: Send2Trash in
/Users/kimoloyola/Library/Application Support/ChimeraX/1.2/site-packages (from
SEQCROW==1.3.2) (1.8.0)  
Requirement already satisfied: psutil in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from SEQCROW==1.3.2) (5.7.2)  
Requirement already satisfied: scipy in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from SEQCROW==1.3.2) (1.5.2)  
Requirement already satisfied: ChimeraX-ConnectStructure~=2.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-Atomic~=1.0->ChimeraX-AddH==2.1.3) (2.0)  
Requirement already satisfied: ChimeraX-PDB~=2.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-Atomic~=1.0->ChimeraX-AddH==2.1.3) (2.4.1)  
Requirement already satisfied: ChimeraX-Nucleotides~=2.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-Atomic~=1.0->ChimeraX-AddH==2.1.3) (2.0.1)  
Requirement already satisfied: ChimeraX-AtomSearchLibrary~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-AtomSearch~=2.0->ChimeraX-AddH==2.1.3) (1.0)  
Requirement already satisfied: ChimeraX-IO~=1.0 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-DataFormats~=1.0->ChimeraX-Maestro==1.8.1) (1.0.1)  
Requirement already satisfied: ChimeraX-SaveCommand~=1.4 in
/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages (from ChimeraX-DataFormats~=1.0->ChimeraX-Maestro==1.8.1) (1.4)  
INFO: pip is looking at multiple versions of chimerax-graphics to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-geometry to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-dataformats to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-core to determine which
version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-connectstructure to
determine which version is compatible with other requirements. This could take
a while.  
INFO: pip is looking at multiple versions of chimerax-clipper to determine
which version is compatible with other requirements. This could take a while.  
Collecting ChimeraX-Clipper~=0.16.0  
Downloading
https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxclipper/releases/0.16.0/ChimeraX_Clipper-0.16.0-cp38-cp38-macosx_10_16_x86_64.whl
(37.5 MB)  
INFO: pip is looking at multiple versions of chimerax-atomsearchlibrary to
determine which version is compatible with other requirements. This could take
a while.  
INFO: pip is looking at multiple versions of chimerax-atomsearch to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-atomiclibrary to
determine which version is compatible with other requirements. This could take
a while.  
INFO: pip is looking at multiple versions of chimerax-atomic to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-arrays to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of seqcrow to determine which
version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-ui to determine which
version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-maestro to determine
which version is compatible with other requirements. This could take a while.  
Collecting ChimeraX-Maestro==1.8.1  
Downloading
https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxmaestro/releases/1.8.1/ChimeraX_Maestro-1.8.1-py3-none-
any.whl (7.7 kB)  
INFO: pip is looking at multiple versions of chimerax-isolde to determine
which version is compatible with other requirements. This could take a while.  
Collecting ChimeraX-ISOLDE==1.2.2  
Downloading
https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxisolde/releases/1.2.2/ChimeraX_ISOLDE-1.2.2-cp38-cp38-macosx_10_13_x86_64.whl
(57.1 MB)  
INFO: pip is looking at multiple versions of chimerax-graphics to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-geometry to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-dataformats to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-core to determine which
version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-connectstructure to
determine which version is compatible with other requirements. This could take
a while.  
INFO: pip is looking at multiple versions of chimerax-clipper to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-hkcage to determine
which version is compatible with other requirements. This could take a while.  
Collecting ChimeraX-HKCage==1.3  
Downloading
https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxhkcage/releases/1.3/ChimeraX_HKCage-1.3-py3-none-
any.whl (8.4 kB)  
INFO: This is taking longer than usual. You might need to provide the
dependency resolver with stricter constraints to reduce runtime. If you want
to abort this run, you can press Ctrl + C to do so. To improve how pip
performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking  
INFO: This is taking longer than usual. You might need to provide the
dependency resolver with stricter constraints to reduce runtime. If you want
to abort this run, you can press Ctrl + C to do so. To improve how pip
performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking  
INFO: This is taking longer than usual. You might need to provide the
dependency resolver with stricter constraints to reduce runtime. If you want
to abort this run, you can press Ctrl + C to do so. To improve how pip
performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking  
INFO: This is taking longer than usual. You might need to provide the
dependency resolver with stricter constraints to reduce runtime. If you want
to abort this run, you can press Ctrl + C to do so. To improve how pip
performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking  
INFO: This is taking longer than usual. You might need to provide the
dependency resolver with stricter constraints to reduce runtime. If you want
to abort this run, you can press Ctrl + C to do so. To improve how pip
performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking  
INFO: This is taking longer than usual. You might need to provide the
dependency resolver with stricter constraints to reduce runtime. If you want
to abort this run, you can press Ctrl + C to do so. To improve how pip
performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking  
INFO: pip is looking at multiple versions of chimerax-atomsearchlibrary to
determine which version is compatible with other requirements. This could take
a while.  
INFO: pip is looking at multiple versions of chimerax-atomsearch to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-atomiclibrary to
determine which version is compatible with other requirements. This could take
a while.  
INFO: pip is looking at multiple versions of chimerax-atomic to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-arrays to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of seqcrow to determine which
version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-ui to determine which
version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of chimerax-maestro to determine
which version is compatible with other requirements. This could take a while.  
INFO: pip is looking at multiple versions of <Python from Requires-Python> to
determine which version is compatible with other requirements. This could take
a while.  
INFO: pip is looking at multiple versions of chimerax-addh to determine which
version is compatible with other requirements. This could take a while.  
  
The conflict is caused by:  
The user requested ChimeraX-UI==1.2.1  
chimerax-hbonds 2.1 depends on ChimeraX-UI~=1.3  
  
To fix this you could try to:  
1\. loosen the range of package versions you've specified  
2\. remove package versions to allow pip attempt to solve the dependency
conflict  
  
  

ERROR: Cannot install ChimeraX-UI==1.2.1 and chimerax-hbonds==2.1 because
these package versions have conflicting dependencies.  
ERROR: ResolutionImpossible: for help visit
https://pip.pypa.io/en/latest/user_guide/#fixing-conflicting-dependencies  
WARNING: You are using pip version 21.0.1; however, version 22.0.4 is
available.  
You should consider upgrading via the
'/Applications/ChimeraX-1.2.4.app/Contents/MacOS/ChimeraX -m pip install
--upgrade pip' command.  
  

> open
> /Users/kimoloyola/SANDBOX/DOCKING/COMPLEXES/Fentanyl_Binder_Complex_5TZO.pdb
> format pdb

Fentanyl_Binder_Complex_5TZO.pdb title:  
Computationally designed fentanyl binder - FEN49*-complex [more info...]  
  
Chain information for Fentanyl_Binder_Complex_5TZO.pdb #1  
---  
Chain | Description  
A B C | ENDO-1,4-β-xylanase A  
  
Non-standard residues in Fentanyl_Binder_Complex_5TZO.pdb #1  
---  
7V7 — N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide  
CL — chloride ion  
K — potassium ion  
  

> select clear

> select clear

> close all

> open /Users/kimoloyola/SANDBOX/DOCKING/SARS-CoV-2/SARS-CoV-2_Spike-
> Protein_OPEN.pdb format pdb

SARS-CoV-2_Spike-Protein_OPEN.pdb title:  
Sars-cov-2 spike ectodomain structure (open state) [more info...]  
  
Chain information for SARS-CoV-2_Spike-Protein_OPEN.pdb #1  
---  
Chain | Description  
A B C | spike glycoprotein  
  
Non-standard residues in SARS-CoV-2_Spike-Protein_OPEN.pdb #1  
---  
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose  
  

Color zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic
models, 0 maps.  

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/toolbar/tool.py", line 202, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/toolshed/info.py", line 379, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/toolshed/__init__.py", line 1285, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/shortcuts/__init__.py", line 52, in run_provider  
shortcuts.run_provider(session, name)  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/shortcuts/shortcuts.py", line 1333, in run_provider  
keyboard_shortcuts(session).try_shortcut(name)  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/shortcuts/shortcuts.py", line 389, in try_shortcut  
self.run_shortcut(keys)  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/shortcuts/shortcuts.py", line 407, in run_shortcut  
sc.run(self.session, status = self._enabled)  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/shortcuts/shortcuts.py", line 326, in run  
f(s)  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/shortcuts/shortcuts.py", line 869, in hide_dust  
for map in maps:  
UnboundLocalError: local variable 'maps' referenced before assignment  
  
UnboundLocalError: local variable 'maps' referenced before assignment  
  
File
"/Applications/ChimeraX-1.2.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/shortcuts/shortcuts.py", line 869, in hide_dust  
for map in maps:  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-18.2.10
OpenGL renderer: Intel Iris Pro OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro11,4
      Processor Name: Quad-Core Intel Core i7
      Processor Speed: 2.2 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 428.40.10.0.0
      OS Loader Version: 540.40.4~45
      SMC Version (system): 2.29f24

Software:

    System Software Overview:

      System Version: macOS 12.0.1 (21A559)
      Kernel Version: Darwin 21.1.0
      Time since boot: 3 days 3:56

Graphics/Displays:

    Intel Iris Pro:

      Chipset Model: Intel Iris Pro
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x0d26
      Revision ID: 0x0008
      Metal Family: Supported, Metal GPUFamily macOS 1
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2880 x 1800 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.4.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.3
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-Clipper: 0.16.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.4
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.2.2
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.4
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.7
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.0
    matplotlib: 3.3.2
    matplotlib-inline: 0.1.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    Send2Trash: 1.8.0
    SEQCROW: 1.3
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0