Opened 3 years ago

Closed 3 years ago

#6755 closed defect (can't reproduce)

Unknown crash

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Depiction Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
  "uptime" : 100000,
  "procLaunch" : "2022-05-02 15:02:53.3929 +0900",
  "procRole" : "Background",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookAir8,1",
  "procStartAbsTime" : 102861551380530,
  "coalitionID" : 11368,
  "osVersion" : {
    "train" : "macOS 12.3.1",
    "build" : "21E258",
    "releaseType" : "User"
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  "captureTime" : "2022-05-02 15:52:19.7542 +0900",
  "incident" : "8C508501-3B2C-462E-9914-04C6150A69A4",
  "bug_type" : "309",
  "pid" : 25802,
  "procExitAbsTime" : 105827834631843,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/private\/var\/folders\/*\/ChimeraX-1.3.app\/Contents\/MacOS\/ChimeraX",
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "985E353E-69F3-4257-FE3F-AFE52E49781E",
  "wakeTime" : 20227,
  "bridgeVersion" : {"build":"19P4243","train":"6.4"},
  "sleepWakeUUID" : "F0D9E1D4-66AD-41D1-9690-9C19312D0ECB",
  "sip" : "enabled",
  "vmRegionInfo" : "0x103e78160 is in 0x103ca8000-0x103f0d000;  bytes after start: 1900896  bytes before end: 609951\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      ColorSync                   103ca4000-103ca8000    [   16K] r--\/r-- SM=COW  \n--->  mapped file                 103ca8000-103f0d000    [ 2452K] r-x\/rwx SM=COW  ...t_id=92d62de5\n      mapped file                 103f0d000-103f47000    [  232K] rw-\/rwx SM=COW  ...t_id=8fbc65e5",
  "isCorpse" : 1,
  "exception" : {"codes":"0x000000000000000a, 0x0000000103e78160","rawCodes":[10,4360470880],"type":"EXC_BAD_ACCESS","signal":"SIGILL","subtype":"KERN_MEMORY_ERROR at 0x0000000103e78160"},
  "termination" : {"flags":0,"code":4,"namespace":"SIGNAL","indicator":"Illegal instruction: 4","byProc":"ChimeraX","byPid":25802},
  "vmregioninfo" : "0x103e78160 is in 0x103ca8000-0x103f0d000;  bytes after start: 1900896  bytes before end: 609951\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      ColorSync                   103ca4000-103ca8000    [   16K] r--\/r-- SM=COW  \n--->  mapped file                 103ca8000-103f0d000    [ 2452K] r-x\/rwx SM=COW  ...t_id=92d62de5\n      mapped file                 103f0d000-103f47000    [  232K] rw-\/rwx SM=COW  ...t_id=8fbc65e5",
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===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/inouechuumu/書類管理/実験データ管理/分子微生物科学研究室/I-TASSER/42-F6-hm502/S682207_results/model1.pdb

Chain information for model1.pdb #1  
---  
Chain | Description  
A | No description available  
  

> rainbow

> open /Users/inouechuumu/Downloads/threading1.pdb

Summary of feedback from opening /Users/inouechuumu/Downloads/threading1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
Rank :1 Template name:7abw_B  
  
Ignored bad PDB record found on line 2  
REMARK :Column 1 - 30 present Atom & Residue records of query sequence.  
  
Ignored bad PDB record found on line 3  
REMARK :Column 31 - 54 present XYZ coordinates of query sequence obtained
after threading alignment.  
  
Ignored bad PDB record found on line 4  
REMARK :Column 55 - 59 present residue number in Template  
  
Ignored bad PDB record found on line 5  
REMARK :Column 60 - 59 present residue name of Template  
  
355 messages similar to the above omitted  
  

> open /Users/inouechuumu/Downloads/threading1.pdb

Summary of feedback from opening /Users/inouechuumu/Downloads/threading1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
Rank :1 Template name:7abw_B  
  
Ignored bad PDB record found on line 2  
REMARK :Column 1 - 30 present Atom & Residue records of query sequence.  
  
Ignored bad PDB record found on line 3  
REMARK :Column 31 - 54 present XYZ coordinates of query sequence obtained
after threading alignment.  
  
Ignored bad PDB record found on line 4  
REMARK :Column 55 - 59 present residue number in Template  
  
Ignored bad PDB record found on line 5  
REMARK :Column 60 - 59 present residue name of Template  
  
355 messages similar to the above omitted  
  

> open /Users/inouechuumu/Downloads/threading1.pdb

Summary of feedback from opening /Users/inouechuumu/Downloads/threading1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
Rank :1 Template name:7abw_B  
  
Ignored bad PDB record found on line 2  
REMARK :Column 1 - 30 present Atom & Residue records of query sequence.  
  
Ignored bad PDB record found on line 3  
REMARK :Column 31 - 54 present XYZ coordinates of query sequence obtained
after threading alignment.  
  
Ignored bad PDB record found on line 4  
REMARK :Column 55 - 59 present residue number in Template  
  
Ignored bad PDB record found on line 5  
REMARK :Column 60 - 59 present residue name of Template  
  
355 messages similar to the above omitted  
  

> open /Users/inouechuumu/Downloads/threading1.pdb

Summary of feedback from opening /Users/inouechuumu/Downloads/threading1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
Rank :1 Template name:7abw_B  
  
Ignored bad PDB record found on line 2  
REMARK :Column 1 - 30 present Atom & Residue records of query sequence.  
  
Ignored bad PDB record found on line 3  
REMARK :Column 31 - 54 present XYZ coordinates of query sequence obtained
after threading alignment.  
  
Ignored bad PDB record found on line 4  
REMARK :Column 55 - 59 present residue number in Template  
  
Ignored bad PDB record found on line 5  
REMARK :Column 60 - 59 present residue name of Template  
  
355 messages similar to the above omitted  
  

> open /Users/inouechuumu/Downloads/threading1.pdb

Summary of feedback from opening /Users/inouechuumu/Downloads/threading1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
Rank :1 Template name:7abw_B  
  
Ignored bad PDB record found on line 2  
REMARK :Column 1 - 30 present Atom & Residue records of query sequence.  
  
Ignored bad PDB record found on line 3  
REMARK :Column 31 - 54 present XYZ coordinates of query sequence obtained
after threading alignment.  
  
Ignored bad PDB record found on line 4  
REMARK :Column 55 - 59 present residue number in Template  
  
Ignored bad PDB record found on line 5  
REMARK :Column 60 - 59 present residue name of Template  
  
355 messages similar to the above omitted  
  

> open /Users/inouechuumu/Downloads/threading1.pdb

Summary of feedback from opening /Users/inouechuumu/Downloads/threading1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
Rank :1 Template name:7abw_B  
  
Ignored bad PDB record found on line 2  
REMARK :Column 1 - 30 present Atom & Residue records of query sequence.  
  
Ignored bad PDB record found on line 3  
REMARK :Column 31 - 54 present XYZ coordinates of query sequence obtained
after threading alignment.  
  
Ignored bad PDB record found on line 4  
REMARK :Column 55 - 59 present residue number in Template  
  
Ignored bad PDB record found on line 5  
REMARK :Column 60 - 59 present residue name of Template  
  
355 messages similar to the above omitted  
  

> open /Users/inouechuumu/Downloads/threading1.pdb

Summary of feedback from opening /Users/inouechuumu/Downloads/threading1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
Rank :1 Template name:7abw_B  
  
Ignored bad PDB record found on line 2  
REMARK :Column 1 - 30 present Atom & Residue records of query sequence.  
  
Ignored bad PDB record found on line 3  
REMARK :Column 31 - 54 present XYZ coordinates of query sequence obtained
after threading alignment.  
  
Ignored bad PDB record found on line 4  
REMARK :Column 55 - 59 present residue number in Template  
  
Ignored bad PDB record found on line 5  
REMARK :Column 60 - 59 present residue name of Template  
  
355 messages similar to the above omitted  
  

> select #1

8456 atoms, 8552 bonds, 529 residues, 1 model selected  

> ~select #1

Nothing selected  

> hide #1 models

> open /Users/inouechuumu/Downloads/threading1.pdb

Summary of feedback from opening /Users/inouechuumu/Downloads/threading1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
Rank :1 Template name:7abw_B  
  
Ignored bad PDB record found on line 2  
REMARK :Column 1 - 30 present Atom & Residue records of query sequence.  
  
Ignored bad PDB record found on line 3  
REMARK :Column 31 - 54 present XYZ coordinates of query sequence obtained
after threading alignment.  
  
Ignored bad PDB record found on line 4  
REMARK :Column 55 - 59 present residue number in Template  
  
Ignored bad PDB record found on line 5  
REMARK :Column 60 - 59 present residue name of Template  
  
355 messages similar to the above omitted  
  

> open /Users/inouechuumu/Downloads/7abw.pdb

7abw.pdb title:  
Crystal structure of siderophore reductase foxb [more info...]  
  
Chain information for 7abw.pdb #2  
---  
Chain | Description  
A | peptidase  
B | peptidase  
  
Non-standard residues in 7abw.pdb #2  
---  
DMU — decyl-β-D-maltopyranoside (decylmaltoside)  
HEM — protoporphyrin IX containing Fe (HEME)  
PE5 — 3,6,9,12,15,18,21,24-octaoxahexacosan-1-ol
(2-(2-{2-[2-(2-{2-[2-(2-ethoxy-
ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethanol;
polyethyleneglycol PEG400)  
ZN — zinc ion  
  

> show #1 models

> ui tool show Matchmaker

> matchmaker #!2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker model1.pdb, chain A (#1) with 7abw.pdb, chain B (#2), sequence
alignment score = 169.6  
RMSD between 6 pruned atom pairs is 1.301 angstroms; (across all 320 pairs:
47.160)  
  

> color #1 #fffb00 transparency 0

> color bynucleotide

Alignment identifier is 1/A  
Alignment identifier is 2/A  
Alignment identifier is 2/B  
Destroying pre-existing alignment with identifier 1/A  
Alignment identifier is 1/A  
Destroying pre-existing alignment with identifier 2/A  
Alignment identifier is 2/A  
Destroying pre-existing alignment with identifier 2/B  
Alignment identifier is 2/B  

> select #1/A:54-55

34 atoms, 35 bonds, 2 residues, 1 model selected  

> select #1/A:54-65

185 atoms, 189 bonds, 12 residues, 1 model selected  

> select
> #1/A:10-15,35-51,100-106,108-115,134-145,158-171,193-214,218-224,247-249,256-266,268-274,327-339,348-351,358-378,385-415,422-445,453-484,488-511,523-527

4266 atoms, 4288 bonds, 268 residues, 1 model selected  

> select #2/A:92

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select #2/A:92-101

77 atoms, 77 bonds, 10 residues, 1 model selected  

> select #2/A:141

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #2/A:141-219

486 atoms, 505 bonds, 1 pseudobond, 61 residues, 2 models selected  

> select #2/A:161-226

381 atoms, 394 bonds, 1 pseudobond, 48 residues, 2 models selected  

> select #2/A:161-234

443 atoms, 458 bonds, 1 pseudobond, 56 residues, 2 models selected  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 INTEL-18.5.8
OpenGL renderer: Intel(R) UHD Graphics 617
OpenGL vendor: Intel Inc.Hardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: MacBookAir8,1
      Processor Name: Dual-Core Intel Core i5
      Processor Speed: 1.6 GHz
      Number of Processors: 1
      Total Number of Cores: 2
      L2 Cache (per Core): 256 KB
      L3 Cache: 4 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1731.100.130.0.0 (iBridge: 19.16.14243.0.0,0)
      OS Loader Version: 540.100.7~23

Software:

    System Software Overview:

      System Version: macOS 12.3.1 (21E258)
      Kernel Version: Darwin 21.4.0
      Time since boot: 5 days 12:21

Graphics/Displays:

    Intel UHD Graphics 617:

      Chipset Model: Intel UHD Graphics 617
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x87c0
      Revision ID: 0x0002
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.5.30
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.0
    ParmEd: 3.2.0
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0

Change History (2)

comment:1 by pett, 3 years ago

Cc: Tom Goddard added
Component: Unassigned → Depiction
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Unknown crash

comment:2 by pett, 3 years ago

Resolution: → can't reproduce
Status: accepted → closed
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