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Opened 3 years ago
Closed 3 years ago
#6761 closed defect (can't reproduce)
Crash hiding cartoons
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 1.4.dev202201190733 (2022-01-19 07:33:48 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010d
Current thread 0x0000f790 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202201190733\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202201190733\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202201190733\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202201190733\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202201190733\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.4.dev202201190733 (2022-01-19)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:/Users/jboze/OneDrive/Área de
> Trabalho/McMaster/2022/Manuscripts/H08/17A wo membrane_right conformers.pdb"
Chain information for 17A wo membrane_right conformers.pdb #1
---
Chain | Description
A | No description available
> select ::name="PRO"
189 atoms, 191 bonds, 27 residues, 1 model selected
> show sel target ab
> ui tool show "Selection Inspector"
Alignment identifier is 1/A
> select clear
> select /A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> ui tool show "Selection Inspector"
> setattr sel r ring_display true
Assigning ring_display attribute to 1 item
> setattr sel r ring_display false
Assigning ring_display attribute to 1 item
> select /A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:32-34
22 atoms, 22 bonds, 3 residues, 1 model selected
> select /A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> open "C:/Users/jboze/OneDrive/Área de
> Trabalho/McMaster/2022/Manuscripts/H08/17B wo membrane_right conformers.pdb"
Chain information for 17B wo membrane_right conformers.pdb #2
---
Chain | Description
A | No description available
Alignment identifier is 1/A
> select #2
4463 atoms, 4564 bonds, 566 residues, 1 model selected
Alignment identifier is 2/A
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33-34
14 atoms, 14 bonds, 2 residues, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> ui tool show "Selection Inspector"
> open C:/Users/jboze/Downloads/AF-P52429-F1-model_v2.pdb
> select #3
4473 atoms, 4574 bonds, 567 residues, 1 model selected
Alignment identifier is 3/A
> select #3/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #3/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1
4463 atoms, 4564 bonds, 566 residues, 1 model selected
> select #1/A#2/A
8926 atoms, 9128 bonds, 1132 residues, 2 models selected
> select clear
Alignment identifier is 1
Alignment identifier is 3/A
> select #3/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #3/A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> ui tool show "Selection Inspector"
> select #3/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #3/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> ui tool show "Selection Inspector"
> select #1/A:33 #2/A:33
14 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:33 #2/A:33
14 atoms, 14 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [33] RMSD: 4.513
> ui tool show "Selection Inspector"
> select #1
4463 atoms, 4564 bonds, 566 residues, 1 model selected
Alignment identifier is 1/A
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> ui tool show "Selection Inspector"
> select #2
4463 atoms, 4564 bonds, 566 residues, 1 model selected
Alignment identifier is 2/A
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
Alignment identifier is 2/A
> select #3
4473 atoms, 4574 bonds, 567 residues, 1 model selected
Alignment identifier is 3/A
> select #3/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #3/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2
4463 atoms, 4564 bonds, 566 residues, 1 model selected
> hide #3 models
Alignment identifier is 2/A
> select ::name="PRO"
567 atoms, 573 bonds, 81 residues, 3 models selected
> show (#1-2 & sel) target ab
Alignment identifier is 1
Alignment identifier is 3/A
> select #3/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #3/A:32-34
22 atoms, 22 bonds, 3 residues, 1 model selected
> select #1/A:32 #2/A:32
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:32-34 #2/A:32-34
44 atoms, 44 bonds, 6 residues, 2 models selected
1 [ID: 1] region 2 chains [32-34] RMSD: 4.221
> show sel target ab
> hide #2 models
> hide #1 models
> show #2 models
> hide #2 models
> show #1 models
> ui tool show Clashes
> clashes ignoreHiddenModels true
1 clashes
> show #2 models
> hide #1 models
Alignment identifier is 1
> select #1/A:32 #2/A:32
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:32 #2/A:32
16 atoms, 14 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [32] RMSD: 4.652
> ui tool show "Selection Inspector"
> select #1/A:33 #2/A:33
14 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:33 #2/A:33
14 atoms, 14 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [33] RMSD: 4.513
> ui tool show "Selection Inspector"
> select #1/A:32 #2/A:32
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:32 #2/A:32
16 atoms, 14 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [32] RMSD: 4.652
> select #1/A:33 #2/A:33
14 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:33 #2/A:33
14 atoms, 14 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [33] RMSD: 4.513
> select #1/A:32 #2/A:32
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:32-33 #2/A:32-33
30 atoms, 30 bonds, 4 residues, 2 models selected
1 [ID: 1] region 2 chains [32-33] RMSD: 4.583
> select #1/A:34 #2/A:34
14 atoms, 12 bonds, 2 residues, 2 models selected
> select #1/A:34 #2/A:34
14 atoms, 12 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [34] RMSD: 3.383
> select #1
4463 atoms, 4564 bonds, 1 pseudobond, 566 residues, 2 models selected
> ~select #4
4463 atoms, 4564 bonds, 566 residues, 1 model selected
Alignment identifier is 1/A
> select #1/A:31-32
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:31-32
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:35
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/A:35-36
19 atoms, 19 bonds, 2 residues, 1 model selected
> select #1/A:36
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:36
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:37
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:37
7 atoms, 6 bonds, 1 residue, 1 model selected
> hide #2 models
> show #1 models
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2
4463 atoms, 4564 bonds, 566 residues, 1 model selected
Alignment identifier is 2/A
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> select #2/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1
4463 atoms, 4564 bonds, 1 pseudobond, 566 residues, 2 models selected
Alignment identifier is 1/A
> select #1/A:31-32
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:31-32
16 atoms, 15 bonds, 2 residues, 1 model selected
> select
> #1/A:13-55,99-102,167-169,180-185,189-197,206-212,233-243,246-248,257-259,261-266,280-295,299-301,315-319,332-340,378-392,394-397,400-413,423-426,485-492
1399 atoms, 1412 bonds, 173 residues, 1 model selected
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2
4463 atoms, 4564 bonds, 566 residues, 1 model selected
Alignment identifier is 2/A
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:35
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #2/A:35
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #2/A:37
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:37
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:35
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #2/A:35
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #2/A:36
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:36
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:36-37
15 atoms, 14 bonds, 2 residues, 1 model selected
> select #2/A:36-41
52 atoms, 54 bonds, 6 residues, 1 model selected
> select #1
4463 atoms, 4564 bonds, 1 pseudobond, 566 residues, 2 models selected
Alignment identifier is 1/A
> select #1/A:34-35
18 atoms, 18 bonds, 2 residues, 1 model selected
> select #1/A:34-35
18 atoms, 18 bonds, 2 residues, 1 model selected
> select #1/A:35
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/A:35
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:32-33
15 atoms, 15 bonds, 2 residues, 1 model selected
> ui tool show "Selection Inspector"
> color =sel #aa0000 bonds
> setattr =sel b halfbond false
Assigning halfbond attribute to 15 items
> select #1/A:33
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:33-34
14 atoms, 14 bonds, 2 residues, 1 model selected
> cartoon hide sel
> show sel target ab
> hide (sel-residues & (protein|nucleic)) target a
> cartoon hide sel-residues
> show (sel-residues & backbone) target ab
> select #1/A:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:34-35
18 atoms, 18 bonds, 2 residues, 1 model selected
> ui tool show "Selection Inspector"
> color =sel #aa0000 bonds
> setattr =sel b halfbond false
Assigning halfbond attribute to 18 items
> show sel target ab
> hide (sel-residues & (protein|nucleic)) target a
> cartoon hide sel-residues
> show (sel-residues & backbone) target ab
> hide (sel-residues & (protein|nucleic)) target a
> cartoon hide sel-residues
> show (sel-residues & ((protein&@ca)|(nucleic&@p))) target ab
> show (sel-residues & sidechain) target ab
> select #1/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:32-35
33 atoms, 34 bonds, 1 pseudobond, 4 residues, 2 models selected
> hide (#!1 & sel-residues & (protein|nucleic)) target a
> cartoon hide (#!1 & sel-residues)
> show (#!1 & sel-residues & backbone) target ab
> show #2 models
> select #2
4463 atoms, 4564 bonds, 566 residues, 1 model selected
Alignment identifier is 2/A
> select #2/A:32
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:32-35
33 atoms, 34 bonds, 4 residues, 1 model selected
> ui tool show "Selection Inspector"
> color =sel #aa0000 bonds
> cartoon hide sel
> hide (sel-residues & (protein|nucleic)) target a
> cartoon hide sel-residues
> show (sel-residues & backbone) target ab
> select #1
4463 atoms, 4564 bonds, 1 pseudobond, 566 residues, 2 models selected
> select #2
4463 atoms, 4564 bonds, 566 residues, 1 model selected
> select #4
1 pseudobond, 1 model selected
> ~select #4
Nothing selected
> select #1/A#2/A
8926 atoms, 9128 bonds, 1 pseudobond, 1132 residues, 3 models selected
Alignment identifier is 1
> select #1/A:32 #2/A:32
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:32-35 #2/A:32-35
66 atoms, 68 bonds, 8 residues, 2 models selected
1 [ID: 1] region 2 chains [32-35] RMSD: 3.904
> select #1/A:1 #2/A:1
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:1-31 #2/A:1-31
468 atoms, 480 bonds, 62 residues, 2 models selected
1 [ID: 1] region 2 chains [1-31] RMSD: 7.497
> cartoon hide sel
> select #1/A:36 #2/A:36
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:36-224 #2/A:36-224
3086 atoms, 3154 bonds, 1 pseudobond, 378 residues, 3 models selected
1 [ID: 1] region 2 chains [36-224] RMSD: 16.588
> hide (#1-2 & sel) target a
> cartoon hide (#1-2 & sel)
===== Log before crash end =====
Log:
You can double click a model's Name or ID in the model panel to edit those
fields
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4.dev202201190733\bin\lib\site-
packages\chimerax\core\tasks.py", line 197, in _run_thread
self.run(*args, **kw)
File "C:\Program Files\ChimeraX 1.4.dev202201190733\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1516, in run
self.result = self.api.newer_versions(**params, async_req=not blocking)
AttributeError: 'DefaultApi' object has no attribute 'newer_versions'
Exception in thread 1:
AttributeError: 'DefaultApi' object has no attribute 'newer_versions'
File "C:\Program Files\ChimeraX 1.4.dev202201190733\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1516, in run
self.result = self.api.newer_versions(**params, async_req=not blocking)
See log for complete Python traceback.
UCSF ChimeraX version: 1.4.dev202201190733 (2022-01-19)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 27.20.100.9749
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel
Locale: en_CA.cp1252
Qt version: PyQt5 5.15.2, Qt 5.15.2
Qt platform: windows
Manufacturer: Dell Inc.
Model: Inspiron 5502
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 8,299,257,856
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i7-1165G7 @ 2.80GHz
OSLanguage: en-US
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.10
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.32.2
ChimeraX-AtomicLibrary: 5.0
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202201190733
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.1
ChimeraX-ModelPanel: 1.3.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.7.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.16
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.5.1
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.3
filelock: 3.4.2
fonttools: 4.28.5
funcparserlib: 1.0.0a0
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.26
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.0.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.4
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 9.0.0
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.24
psutil: 5.9.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 303
pyzmq: 22.3.0
qtconsole: 5.2.2
QtPy: 2.0.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
Send2Trash: 1.8.0
SEQCROW: 1.3.2
setuptools: 59.8.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.8
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Depiction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash hiding cartoons |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Maybe graphics driver crash. Python traceback shows it is Qt event loop.