![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Oct 23, 2024:
- 9:31 PM Ticket #16177 (Crash in garbage collection) created by
- […]
- 9:18 PM Ticket #16176 (Error in glBufferData) created by
- […]
- 6:06 PM Ticket #16175 (Cannot create profile) created by
- […]
- 3:41 PM Training edited by
- (diff)
- 2:37 PM phenix-10-24-24 edited by
- (diff)
- 2:36 PM phenix-10-24-24 edited by
- (diff)
- 2:34 PM phenix-10-24-24 edited by
- (diff)
- 2:33 PM phenix-10-24-24 edited by
- (diff)
- 2:16 PM phenix-10-24-24 edited by
- (diff)
- 2:11 PM phenix-10-24-24 edited by
- (diff)
- 1:59 PM Ticket #16174 (ISOLDE: sim start: Error compiling kernel) created by
- […]
- 1:57 PM phenix-10-24-24 edited by
- (diff)
- 1:50 PM phenix-10-24-24 edited by
- (diff)
- 1:45 PM phenix-10-24-24 edited by
- (diff)
- 1:33 PM phenix-10-24-24 edited by
- (diff)
- 1:23 PM phenix-10-24-24 created by
- 1:22 PM Features edited by
- (diff)
- 12:56 PM Ticket #16171 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:36 PM Ticket #16173 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by
- […]
- 12:25 PM Ticket #16172 (ISOLDE: structure contains 'LP' (lone pair) element) created by
- […]
- 11:58 AM Ticket #16171 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) created by
- […]
- 11:11 AM Ticket #16170 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by
- duplicate: Duplicate of #15753
- 11:09 AM Ticket #16169 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by
- duplicate: Duplicate of #15753
- 10:33 AM Ticket #16167 (Map settings: numpy array comparison) closed by
- fixed: Fixed. Very obscure error caused by using volume tilted slab mouse …
- 9:56 AM Ticket #16166 (Crash on Mac waking from sleep) closed by
- duplicate: This crash in the Qt 6.6 window toolkit happens when unplugging or …
- 9:40 AM Ticket #16170 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by
- […]
- 9:37 AM Ticket #16169 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by
- […]
- 8:59 AM Ticket #16168 (Crash in event loop) closed by
- can't reproduce
- 8:59 AM ChangeLog edited by
- (diff)
- 8:51 AM ChangeLog edited by
- (diff)
- 8:51 AM Ticket #16165 (swapaa: DunbrackRotamerLibrary' object has no attribute 'display_name') closed by
- duplicate: Hi Samira, Thanks for reporting this problem. It has been fixed in …
- 7:58 AM Ticket #16168 (Crash in event loop) created by
- […]
- 4:39 AM Ticket #16167 (Map settings: numpy array comparison) created by
- […]
- 2:43 AM Ticket #16166 (Crash on Mac waking from sleep) created by
- […]
- 2:02 AM Ticket #16165 (swapaa: DunbrackRotamerLibrary' object has no attribute 'display_name') created by
- […]
Oct 22, 2024:
- 5:54 PM Ticket #9825 (Quest VR is not smooth) closed by
- nonchimerax: This appeared to be a problem with Meta Quest AirLink.
- 5:48 PM Ticket #14820 (glBindBuffer: invalid operation) closed by
- can't reproduce: No response from reporter.
- 5:45 PM Ticket #15103 (map.volume._update_drawings: KeyError) closed by
- can't reproduce: This is the only report of this error in many years using …
- 5:42 PM Ticket #15186 (Crash changing Mac display configuration) closed by
- fixed: This crash appears to be fixed by Qt 6.7 which has been in the …
- 5:40 PM Ticket #15229 (Crash attaching file for bug report) closed by
- can't reproduce: Probable Qt bug.
- 5:38 PM Ticket #15358 (Too easy to delete labels with mouse mode; also no undo) closed by
- not a bug
- 5:37 PM Ticket #15413 (Crash when waking from sleep, Mac M2, ...) closed by
- fixed: This crash appears to be fixed by Qt 6.7 which has been used by the …
- 5:36 PM Ticket #15591 (Add Foldseek structure similarity search) closed by
- fixed: This has been added as the Similar Structures tools.
- 5:34 PM Ticket #15734 (Blast of esmfold database fails, database deleted on server) closed by
- fixed
- 5:28 PM Ticket #15869 (Alphafold interfaces: PAE not opened) closed by
- fixed
- 5:27 PM Ticket #16056 (Crash moving window between screens) closed by
- fixed: Qt version 6.7 used in the ChimeraX daily builds appears to have fixed …
- 5:26 PM Ticket #15877 (Graphics crash, macOS 14.5, Mac M1 Max) closed by
- nonchimerax: Apple M1 graphics driver crash.
- 5:25 PM Ticket #16069 (Crash moving window between screens) closed by
- fixed: It appears Qt 6.7 in the ChimeraX daily build has fixed most instances …
- 5:23 PM Ticket #16161 (Re: [chimerax-users] Mercator projection of MRC voluem coloured by ...) closed by
- not a bug: Handled on ChimeraX mailing list.
- 5:20 PM Ticket #16163 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 5:18 PM Ticket #16162 ('XR' object has no attribute '_eye_view_states') closed by
- duplicate: This error was with a June 2024 version of ChimeraX ChimeraX …
- 4:56 PM Ticket #16164 (ui view fourup: volume_viewer is None) created by
- […]
- 1:34 PM Ticket #16163 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) created by
- […]
- 1:26 PM Ticket #16162 ('XR' object has no attribute '_eye_view_states') created by
- […]
- 12:24 PM Ticket #16159 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:19 PM Ticket #16161 (Re: [chimerax-users] Mercator projection of MRC voluem coloured by ...) created by
- […] [[Image(...)]] [[Image(...)]]
- 11:43 AM Ticket #16160 (Mercator projection of MRC voluem coloured by attribute) closed by
- not a bug: Seems like a chimerax-users question, so redirected it there.
- 11:00 AM Ticket #16157 (ModelArchive PAE temp files: Permission denied) closed by
- nonchimerax: ChimeraX creates a temporary file when it downloads the Model Archive …
- 10:51 AM Ticket #16160 (Mercator projection of MRC voluem coloured by attribute) created by
- […]
- 10:45 AM Ticket #16159 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) created by
- […]
- 10:31 AM Dev2024-10-28 created by
- 10:30 AM Dev2024-10-21 edited by
- (diff)
- 10:29 AM 2024-10-24 created by
- 10:27 AM DeveloperMeetings edited by
- (diff)
- 10:23 AM Ticket #16158 (ISOLDE: Clipper distribution was not found) created by
- […]
- 10:01 AM Ticket #16156 (ui view fourup: ZeroDivisionError) closed by
- duplicate
- 9:49 AM Ticket #16155 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:27 AM Ticket #16096 (Convenient conservation selection) closed by
- fixed: Now implemented in the sequence viewer's context menu under …
- 5:51 AM Ticket #16157 (ModelArchive PAE temp files: Permission denied) created by
- […]
- 4:51 AM Ticket #16156 (ui view fourup: ZeroDivisionError) created by
- […]
- 12:47 AM Ticket #16154 (GitHub Actions mac universal2 build missing arm64 numpy) closed by
- fixed: Fixed. Added the complaining items, which had no arm64 equivalents …
- 12:43 AM Ticket #16155 (Crash on Mac waking from sleep) created by
- […]
Oct 21, 2024:
- 5:05 PM Ticket #16154 (GitHub Actions mac universal2 build missing arm64 numpy) created by
- 3:42 PM Dev2024-10-21 edited by
- (diff)
- 3:31 PM Dev2024-10-21 edited by
- (diff)
- 3:02 PM Dev2024-10-21 edited by
- (diff)
- 2:20 PM Dev2024-10-21 created by
- 2:20 PM DeveloperMeetings edited by
- (diff)
- 1:57 PM Dev2024-10-14 edited by
- (diff)
- 1:29 PM Dev2024-10-14 edited by
- (diff)
- 1:20 PM Ticket #16153 (Similar Structures tool: tried to search Alphafold DB using BLAST) closed by
- fixed: Fixed. Oops. Apparently I never retested similar structures blast …
- 1:05 PM Ticket #16151 (Acer 27" SpatialLabs View Pro Stereoscopic 3D Monitor openxr error) closed by
- fixed: I put in a fix for this error. Give the ChimeraX daily build dated …
- 12:50 PM Ticket #16153 (Similar Structures tool: tried to search Alphafold DB using BLAST) created by
- […]
- 12:13 PM Ticket #16152 ('sym' problems) created by
- […] sym-bug.cxc
- 11:44 AM Ticket #16146 (Crash on Mac waking from sleep) closed by
- duplicate: This ChimeraX crash is caused by a bug in the Qt 6.6 window toolkit …
- 11:37 AM Ticket #16144 (Graphics crash, macOS 14.5, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:35 AM Ticket #16142 (Foldseek: permission error writing temp file) closed by
- nonchimerax: I guess some defective virus scan software has locked the temporary …
- 11:25 AM Ticket #16141 (Crash in QWebEngine after alphafold predict) closed by
- duplicate: Yep, 4th report of same crash by same user (same uuid, same machine, …
- 10:29 AM Ticket #16150 (AddCharge: Hydrogen bonded to non-heavy atom) closed by
- not a bug: Bad CONECT records
- 10:24 AM Ticket #16148 ('MarkedHistogram' object has no attribute '_min_val') closed by
- duplicate: Duplicate of #15759
- 10:08 AM Ticket #16147 (AddCharge: Hydrogen not bonded to exactly one other atom) closed by
- not a bug: Either mangled CONECT records or badly incomplete structure
- 9:54 AM Ticket #16143 (Follow up to: SEQCROW: trouble reading .out files) closed by
- not a bug
- 9:10 AM Ticket #16151 (Acer 27" SpatialLabs View Pro Stereoscopic 3D Monitor openxr error) created by
- […]
- 6:37 AM Ticket #16150 (AddCharge: Hydrogen bonded to non-heavy atom) created by
- […]
- 6:14 AM Ticket #16149 (ISOLDE: 5-bond carbon) created by
- […]
- 2:59 AM Ticket #16148 ('MarkedHistogram' object has no attribute '_min_val') created by
- […]
- 12:31 AM Ticket #16147 (AddCharge: Hydrogen not bonded to exactly one other atom) created by
- […]
Oct 20, 2024:
- 6:21 AM Ticket #16146 (Crash on Mac waking from sleep) created by
- […]
- 4:21 AM Ticket #16145 (Session restore: index out of range evaluating header) created by
- […]
- 1:46 AM Ticket #16144 (Graphics crash, macOS 14.5, Intel Iris Plus Graphics 645) created by
- […]
Oct 19, 2024:
Oct 18, 2024:
- 10:27 PM Ticket #16142 (Foldseek: permission error writing temp file) created by
- […]
- 9:36 PM Ticket #16141 (Crash in QWebEngine after alphafold predict) created by
- […]
- 5:08 PM Ticket #16140 (Crash in event loop) closed by
- can't reproduce: Possibly remote display
- 5:06 PM Ticket #16139 (RE: Server down) closed by
- not a bug: This was Kimberly's followup to #16138, not a true bug report.
- 5:06 PM Ticket #16136 (Tethers invisible behind transparent surface) closed by
- not a bug
- 5:04 PM Ticket #16138 (Server down) closed by
- not a bug: Hi Marcel, As Kimberly noted, our servers have been down for …
- 5:01 PM Ticket #16137 (Issue with download page) closed by
- not a bug: Hi Sabrina, Our servers have been down this week for maintenance. …
- 4:51 PM Ticket #16134 (Crash on Mac waking from sleep) closed by
- duplicate
- 4:46 PM Ticket #16133 (Crash in garbage collection) closed by
- duplicate: Hi Siqiong, Thanks for reporting this problem. These garbage …
- 4:41 PM Ticket #16132 (SEQCROW: trouble reading .out files) closed by
- duplicate: The Chinese characters in the Subject line are causing new tickets to …
- 12:38 PM Ticket #16140 (Crash in event loop) created by
- […]
- 12:05 PM Ticket #16139 (RE: Server down) created by
- […]
- 12:05 PM Ticket #16138 (Server down) created by
- […]
- 12:05 PM Ticket #16137 (Issue with download page) created by
- […]
- 12:05 PM Ticket #16136 (Tethers invisible behind transparent surface) created by
- […] …
Oct 14, 2024:
- 1:27 PM Ticket #16130 (glBufferData: out of memory) closed by
- limitation: Graphics ran out of memory. Your 16 Gbyte mask is too large to render …
- 11:56 AM Ticket #16122 (Crash in QWebEngine after alphafold predict) closed by
- duplicate: Yes, same user reporting same problem for 3rd time.
- 11:45 AM Ticket #16135 (Trouble installing on Ubuntu 24.04) created by
- […]
- 10:49 AM Ticket #16134 (Crash on Mac waking from sleep) created by
- […]
- 10:25 AM Ticket #15536 (ui view fourup: division by zero) closed by
- fixed: This should be fixed in any recent daily build.
- 10:00 AM Ticket #16052 (Weird graphics) closed by
- fixed: Glad to hear it is fixed. Thank you for letting us know.
- 1:16 AM Ticket #16133 (Crash in garbage collection) created by
- […]
Oct 13, 2024:
- 10:33 PM Ticket #16128 (MolecularDynamicsViewer: list index out of range) closed by
- limitation: Hi Sebastien, This error indicated that your PDB isn't a correct …
- 7:03 PM Ticket #16132 (SEQCROW: trouble reading .out files) created by
- […] C3H6O-right.out diclofenac.out …
- 6:48 PM Ticket #16131 (SEQCROW: trouble reading .out files) created by
- […]
- 4:19 PM Ticket #16123 (Crash in Qt redraw after screen disconnect) closed by
- can't reproduce
- 3:47 PM Ticket #16121 (Crash in garbage collection) closed by
- duplicate
- 3:32 PM Ticket #16118 (Permission denied replacing commands file) closed by
- can't reproduce
- 2:49 PM Ticket #16116 (Crash on Mac waking from sleep) closed by
- duplicate
- 2:21 PM Ticket #16115 (Permission denied replacing commands file) closed by
- can't reproduce
- 2:11 PM Ticket #16114 (Permission denied replacing commands file) closed by
- can't reproduce
- 1:38 PM Ticket #16113 (Select..Contacts not completely working) closed by
- duplicate: Hi Anthony, Thanks for reporting this problem. It was fixed about …
- 10:55 AM Ticket #16130 (glBufferData: out of memory) created by
- […]
Oct 12, 2024:
- 7:43 PM Ticket #16129 (Session restore: LZ4F_decompress failed) created by
- […]
- 2:20 AM Ticket #16128 (MolecularDynamicsViewer: list index out of range) created by
- […]
- 1:41 AM Ticket #16127 (QSpiApplication::keyEventError and various other errors) created by
- […]
- 1:38 AM Ticket #16126 (Unknown problem) created by
- […] 28C02F33@00B3C12F.81350A67.png
- 1:12 AM Ticket #16125 (SEQCROW: ORCA .out: not enough values to unpack) created by
- […] diclofenac.out
Oct 11, 2024:
- 9:51 PM Ticket #16124 (SEQCROW: AaronTools: boron not in radii_dict) created by
- […]
- 9:21 PM Ticket #16123 (Crash in Qt redraw after screen disconnect) created by
- […]
- 4:39 PM Ticket #16122 (Crash in QWebEngine after alphafold predict) created by
- […]
- 12:39 PM Ticket #15709 (BLAST Protein failing: 'NoneType' object has no attribute 'keys') closed by
- fixed: This has been fixed for a while.
- 12:39 PM Ticket #15704 (BLAST databases missing) closed by
- fixed: This has been fixed for a while.
- 11:37 AM Ticket #16121 (Crash in garbage collection) created by
- […]
- 11:08 AM Ticket #16120 (Can't plot Model Archive pairwise scores if structure has non-polymer ...) created by
- From: Gerardo Tauriello Subject: Re: [chimerax-users] [EXTERN] Re: …
- 10:52 AM Ticket #16119 (Opening modelcif pae gives "IndexError: list index out of range") closed by
- fixed: Fixed. The mmcif table reader returns an empty list when no pairwise …
- 10:49 AM Ticket #16119 (Opening modelcif pae gives "IndexError: list index out of range") created by
- […]
- 10:49 AM Ticket #7250 (Cloud builds) closed by
- fixed: We now produce nightly builds of all platforms. Further bugs should be …
- 10:16 AM StartDaily edited by
- (diff)
- 10:14 AM StartDaily edited by
- (diff)
- 7:45 AM Ticket #16118 (Permission denied replacing commands file) created by
- […]
- 6:26 AM Ticket #16116 (Crash on Mac waking from sleep) created by
- […]
- 5:42 AM Ticket #16115 (Permission denied replacing commands file) created by
- […]
- 5:31 AM Ticket #16114 (Permission denied replacing commands file) created by
- […]
- 3:32 AM Ticket #16113 (Select..Contacts not completely working) created by
- […]
- 2:24 AM Ticket #16112 ("seq align" sequence names may need to be more specific in some ...) created by
- […]
Oct 10, 2024:
- 10:57 PM Ticket #16111 (Bug report submission says it failed but actually succeeds) created by
- I tried to report the same bug 3 times about 3 minutes apart using …
- 10:50 PM Ticket #16110 (AlphaFold PAE plot not updating to reflect new PAE values) closed by
- duplicate
- 10:49 PM Ticket #16109 (AlphaFold PAE plot not updating to reflect new PAE values) closed by
- duplicate: Duplicate of #16108
- 10:46 PM Ticket #16108 (AlphaFold PAE plot not updating to reflect new PAE values) closed by
- fixed: Fixed. Made alphafold pae command properly update the matrix values …
- 10:43 PM Ticket #16110 (AlphaFold PAE plot not updating to reflect new PAE values) created by
- […]
- 10:42 PM Ticket #16109 (AlphaFold PAE plot not updating to reflect new PAE values) created by
- […]
- 10:41 PM Ticket #16108 (AlphaFold PAE plot not updating to reflect new PAE values) created by
- […]
- 6:19 PM Ticket #16107 (Unknown problem) created by
- […] 3B86D635@F87BFD7D.157D0867.png
- 3:30 PM Ticket #16097 (Problem restoring sequence regions) closed by
- can't reproduce
- 2:38 PM Ticket #16106 (measure symmetry helix placements wrong) closed by
- fixed
- 2:32 PM Ticket #16106 (measure symmetry helix placements wrong) created by
- […]
- 1:58 PM NIAID2024 edited by
- (diff)
- 1:54 PM Ticket #16104 (AlphaFold Error Plot: IndexError: list index out of range) closed by
- duplicate: This was fixed 5 months ago (bug #15143). Get ChimeraX 1.8 to avoid …
- 1:50 PM NIAID2024 edited by
- (diff)
- 1:47 PM NIAID2024 edited by
- (diff)
- 12:59 PM Ticket #16105 (Crash in event loop) closed by
- can't reproduce
- 12:50 PM Ticket #16102 (Crash in garbage collection) closed by
- duplicate: Hi Anthony, Thanks for reporting this problem. It is fixed in the …
- 12:44 PM Ticket #996 (Issue reading PDB files) closed by
- fixed
- 12:07 PM Ticket #16101 (Segger: bounding_grid() missing 1 required positional argument: 'cube') closed by
- fixed: Fixed. My addition of the cube option to the molmap command changed …
- 11:52 AM Ticket #16100 (Blast Protein failure) closed by
- limitation: Opal web services discontinued
- 11:47 AM 2024-10-10 edited by
- (diff)
- 11:47 AM 2024-10-10 edited by
- (diff)
- 11:22 AM Ticket #16105 (Crash in event loop) created by
- […]
- 10:51 AM Ticket #16098 (Crash in garbage collection) closed by
- duplicate
- 10:24 AM Ticket #10397 (traceback opening Segmentations tool after opening SEG-only DICOM) closed by
- fixed: This should be …
- 9:35 AM Ticket #16104 (AlphaFold Error Plot: IndexError: list index out of range) created by
- […]
- 9:35 AM Ticket #16103 (Crash during/after "clipper associate") created by
- […]
- 7:33 AM Ticket #16102 (Crash in garbage collection) created by
- […]
- 6:52 AM Ticket #16101 (Segger: bounding_grid() missing 1 required positional argument: 'cube') created by
- […]
Oct 9, 2024:
- 8:39 PM Ticket #16100 (Blast Protein failure) created by
- […]
- 6:08 PM Ticket #16068 (Crash involving morph) closed by
- fixed: The code that composes chains from polymeric segments joined by …
- 5:10 PM Ticket #15772 (Missing the required parameter `arch` when calling `check_for_updates`) closed by
- fixed: Since this ticket hasn't received any updates and I haven't been …
- 5:09 PM Ticket #15650 (ChimeraX 1.7 PyPy package import error: ModuleNotFoundError: No module ...) closed by
- fixed: A new PyPi package went up some time ago.
- 5:09 PM Ticket #15649 (ChimeraX 1.7 PyPi package import error: ModuleNotFoundError: No module ...) closed by
- fixed: A new PyPi package went up some time ago.
- 3:52 PM Ticket #16098 (Crash in garbage collection) created by
- […]
- 1:47 PM Ticket #16097 (Problem restoring sequence regions) created by
- […]
- 10:03 AM Ticket #16094 (volume level: OSError: [Errno 89] Operation canceled) closed by
- nonchimerax: ChimeraX is trying to read an MRC map the user opened from an …
- 9:52 AM Ticket #16091 (Crash in QWebEngine after alphafold predict) closed by
- can't reproduce: Seems to be a QWebEngine problem. Crash was in thread 26 where it …
- 9:40 AM Ticket #16089 (Movie recording: No space left on device) closed by
- limitation: User ran out of disk space recording a movie.
- 9:38 AM Ticket #16086 (glBufferData: out of memory) closed by
- can't reproduce: OpenGL out of memory error allocating a 40 Mbyte buffer to show …
- 9:25 AM Ticket #16093 (AddCharge: Hydrogen bonded to atom that should not have hydrogens) closed by
- can't reproduce: Would need the structure to see how this happened.
- 9:11 AM Ticket #16090 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:05 AM Ticket #16085 (Crash in garbage collection) closed by
- duplicate
- 5:59 AM Ticket #16096 (Convenient conservation selection) created by
- […]
- 5:08 AM Ticket #16095 (SEQCROW: trouble reading .out files) created by
- […] VCD.out
- 3:17 AM Ticket #16094 (volume level: OSError: [Errno 89] Operation canceled) created by
- […]
Oct 8, 2024:
- 11:20 PM Ticket #16093 (AddCharge: Hydrogen bonded to atom that should not have hydrogens) created by
- […]
- 9:19 PM Ticket #16092 (SEQCROW: self.start_time is None) created by
- […]
- 7:29 PM Ticket #15825 (Add a PDB and AlphaFold database sequence search using RCSB mmseqs2) closed by
- fixed: Done. Added as part of the new Similar Structures tool, and the new …
- 7:11 PM Ticket #16091 (Crash in QWebEngine after alphafold predict) created by
- […]
- 6:37 PM Ticket #16090 (Crash on Mac waking from sleep) created by
- […]
- 6:34 PM Ticket #16089 (Movie recording: No space left on device) created by
- […]
- 6:02 PM Ticket #16088 (Fetch model archive structures and plot PAE values) closed by
- fixed: Done. I added the code to ChimeraX changing it in a few small ways. …
- 5:51 PM Ticket #16088 (Fetch model archive structures and plot PAE values) created by
- Gerardo contributed code to fetch Model Archive structures and plot …
- 12:37 PM Ticket #16087 (PAE value reported by mouse hover is wrong) closed by
- fixed: Fixed. Swapped row and column in reporting PAE value on mouse hover.
- 12:32 PM Ticket #16087 (PAE value reported by mouse hover is wrong) created by
- […]
- 11:46 AM Dev2024-10-14 created by
- 11:45 AM 2024-10-10 created by
- 11:44 AM 2024-10-3 edited by
- (diff)
- 11:43 AM DeveloperMeetings edited by
- (diff)
- 11:09 AM Ticket #16086 (glBufferData: out of memory) created by
- […]
- 11:06 AM Ticket #16085 (Crash in garbage collection) created by
- […]
- 9:35 AM Ticket #16084 (Crash in event loop) closed by
- can't reproduce
- 2:36 AM Ticket #16084 (Crash in event loop) created by
- […]
Oct 7, 2024:
- 8:55 PM Ticket #16083 (Crash on Mac unplugging external display) closed by
- fixed: As described in the previous 2 comments it appears this crash has been …
- 8:54 PM Ticket #15982 (Crash disconnecting hdmi projector, Mac, Qt 6.7.2) closed by
- can't reproduce: Further attempts to reproduce this crash in ticket #16083 failed. The …
- 5:51 PM Ticket #16083 (Crash on Mac unplugging external display) created by
- […]
- 5:49 PM Ticket #16081 (kvfinder error with multiple structures) closed by
- fixed
- 4:12 PM Dev2024-10-7 edited by
- (diff)
- 4:11 PM Dev2024-10-7 edited by
- (diff)
- 3:56 PM Dev2024-10-7 edited by
- (diff)
- 3:09 PM Dev2024-10-7 edited by
- (diff)
- 2:46 PM Ticket #16082 (Driver crash creating dozen of alignments) closed by
- can't reproduce: It's not that easy to accidentally open dozens of alignments anymore.
- 2:44 PM Ticket #16082 (Driver crash creating dozen of alignments) created by
- […]
- 2:41 PM Ticket #16079 (Crash on Mac waking from sleep) closed by
- duplicate: This crash is caused by a bug in the Mac Qt window toolkit used by …
- 2:41 PM Ticket #16081 (kvfinder error with multiple structures) created by
- […]
- 2:30 PM Ticket #16074 (Add command to measure molecular weight of specified molecules) closed by
- fixed: Added "measure weight" command, takes atom specifier and reports the …
- 2:27 PM Ticket #16051 (MolecularDynamicsViewer) closed by
- fixed
- 2:19 PM Ticket #16080 (SEQCROW: substitute: residue names must be 4 characters or less) created by
- […]
- 2:15 PM Ticket #16077 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties.
- 2:11 PM Ticket #16079 (Crash on Mac waking from sleep) created by
- […]
- 2:10 PM Ticket #16078 (toolshed install: Non-existent wheel file) created by
- […]
- 2:02 PM Ticket #16077 (Crash on Mac waking from sleep) created by
- […]
- 2:01 PM Ticket #16023 (ChimeraX download problem) closed by
- nonchimerax: Due to database problems, this comment from Sophie did not make it …
- 1:59 PM Ticket #16076 (ArtiaX: arrays used as indices must be of integer (or boolean) type) closed by
- duplicate
- 1:55 PM Ticket #16076 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by
- […]
- 1:55 PM Ticket #16075 (QWebEngine crash) closed by
- can't reproduce: Due to database problems, the previous comments showing up on this …
- 1:49 PM Ticket #16075 (QWebEngine crash) created by
- […]
- 12:07 PM Ticket #16074 (Add command to measure molecular weight of specified molecules) created by
- Jan asked for a command to measure the molecular weight of a specified …
- 12:05 PM Ticket #16071 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties adding …
- 11:58 AM Ticket #16073 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Oct 5, 2024:
Oct 4, 2024:
- 4:15 PM ChangeLog edited by
- (diff)
- 10:48 AM Ticket #16071 (Crash on Mac waking from sleep) created by
- […]
Oct 3, 2024:
- 6:08 PM Ticket #16070 (SEQCROW: read Gaussian: 'NoneType' object has no attribute 'group') created by
- […]
- 4:58 PM Ticket #15804 (Log cannot restore session state) closed by
- fixed: Added code to protect against empty log file contents.
- 4:25 PM Ticket #2689 (Add bundle_info.xml tag for documentation file locations) closed by
- fixed: The documentation update is the fix. The files need to be installed …
- 4:19 PM Ticket #15971 (nuc slab positions miscalculated?) closed by
- fixed: Fixed. Use alternate implementation of Plane class.
- 3:20 PM Ticket #16069 (Crash moving window between screens) created by
- […]
- 2:15 PM 2024-10-3 edited by
- (diff)
- 1:22 PM Ticket #16065 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt crash in displayConfigFinalizedProc.
- 1:21 PM Ticket #16057 (Crash on Mac waking from sleep after screen disconnected) closed by
- duplicate: Mac Qt crash in _NSViewHierarchyDidChangeBackingProperties.
- 1:15 PM Ticket #16068 (Crash involving morph) reopened by
- Conferring with Tom Goddard, we can produce a crash -- so re-opening.
- 1:08 PM Ticket #16068 (Crash involving morph) closed by
- duplicate: Works in ChimeraX daily build. I think the crash is because of the …
- 10:31 AM Ticket #16067 (Crash involving morph) closed by
- duplicate: More info provided by #16068
- 9:00 AM Ticket #16066 (reading AlphaFold JSON as MOLE: KeyError: 'Channels') closed by
- duplicate
- 8:56 AM Ticket #16064 (ViewDockX: JavaScriptConsoleMessageLevel.WarningMessageLevel) closed by
- can't reproduce: Want to rewrite entirely anyway.
- 8:54 AM Ticket #16063 (Test) closed by
- not a bug
- 8:52 AM Ticket #16060 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 8:51 AM Ticket #16059 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 8:50 AM Ticket #16058 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate: Hi Elena, Thanks for reporting this problem. It has been fixed, and …
- 8:47 AM Ticket #15980 (Render by Attribute: 'MarkedHistogram' object has no attribute '_min_val') closed by
- fixed
- 5:46 AM Ticket #16068 (Crash involving morph) created by
- […] F roTq both delB hideHOH selRes.cxs
- 5:29 AM Ticket #16067 (Crash involving morph) created by
- […]
- 4:47 AM Ticket #16066 (reading AlphaFold JSON as MOLE: KeyError: 'Channels') created by
- […]
- 3:34 AM Ticket #16065 (Crash on Mac waking from sleep) created by
- […]
Oct 2, 2024:
- 6:23 PM Ticket #16064 (ViewDockX: JavaScriptConsoleMessageLevel.WarningMessageLevel) created by
- […]
- 5:37 PM Ticket #16063 (Test) created by
- […]
- 2:23 PM Ticket #15811 (Session save: No bundle information for chimerax.core.tasks.Tasks) closed by
- fixed: I just tried saving a session in my developer build and it worked …
- 2:21 PM Ticket #16062 (ChimeraX bug report submission) created by
- […]
- 11:18 AM Ticket #16061 (Support chains in "color byattribute") created by
- Per summary. Still seems iffy adding chains to the tool interface, …
- 11:09 AM Ticket #16060 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 11:09 AM Ticket #16059 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 11:09 AM Ticket #16058 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 10:42 AM Ticket #16055 (Crash moving window between screens) closed by
- duplicate: Qt crash in _NSViewHierarchyDidChangeBackingProperties.
- 10:08 AM Ticket #16057 (Crash on Mac waking from sleep after screen disconnected) created by
- […]
- 10:01 AM Ticket #16056 (Crash moving window between screens) created by
- […]
- 9:42 AM Ticket #16055 (Crash moving window between screens) created by
- […]
- 12:33 AM Ticket #16054 (mmcif.get_cif_tables() raises TypeError if table does not exist) closed by
- fixed: Fixed code and function documentation.
- 12:06 AM Ticket #16053 (Opening mmCIF file spams log with URLS to each non-standard chemical ...) closed by
- fixed: Removed debugging print.
Oct 1, 2024:
- 7:24 PM Ticket #16054 (mmcif.get_cif_tables() raises TypeError if table does not exist) created by
- […]
- 7:20 PM Ticket #16053 (Opening mmCIF file spams log with URLS to each non-standard chemical ...) created by
- […]
- 11:21 AM Ticket #16048 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt crash in displayConfigFinalizedProc probably connecting or …
- 11:12 AM Dev2024-10-7 created by
- 11:11 AM DeveloperMeetings edited by
- (diff)
- 9:38 AM Ticket #16052 (Weird graphics) created by
- […] 3.png
- 9:15 AM Ticket #16051 (MolecularDynamicsViewer) created by
- […]
- 8:38 AM Ticket #16050 (no OpenCL or compatible CUDA drivers) created by
- […]
- 8:33 AM Ticket #16049 (Could not make graphics context current) created by
- […]
- 1:13 AM Ticket #16048 (Crash on Mac waking from sleep) created by
- […]
Sep 30, 2024:
- 9:38 PM Ticket #16027 (alphafold match failure with UniProt ID) closed by
- fixed: Fixed. If you are not connected to the internet and you try to lookup …
- 7:18 PM Ticket #16047 (GLTF output gets wrong color for instanced ribbons) closed by
- fixed: Fixed. When GLTF output was saved with no instancing the copies of …
- 6:08 PM Ticket #16034 (GLTF: Cannot center nodes because a node has both a mesh and children) closed by
- fixed: Fixed. Code now allows output GLTF with nodes centered when a …
- 6:01 PM Ticket #16047 (GLTF output gets wrong color for instanced ribbons) created by
- […]
- 5:00 PM Ticket #16030 (Could not make graphics context current after various Qt context errors) closed by
- duplicate: Duplicate of #16028
- 4:59 PM Ticket #16028 (Crash in swap_buffers after various Qt context problems) closed by
- can't reproduce: OpenGL not functioning. Possible remote display problem.
- 4:31 PM Dev2024-9-30 edited by
- (diff)
- 4:31 PM 2024-10-3 created by
- 4:29 PM Dev2024-9-30 edited by
- (diff)
- 4:15 PM Dev2024-9-30 edited by
- (diff)
- 4:10 PM Dev2024-9-30 created by
- 4:09 PM DeveloperMeetings edited by
- (diff)
- 2:19 PM Ticket #16043 (Inadequate OpenGL: Could not make opengl context current) closed by
- limitation: User's OpenGL driver only offered version 3.0.
- 2:18 PM Ticket #16046 (OpenCommands script crashes ChimeraX) created by
- […]
- 2:18 PM Ticket #16039 (glClear: invalid framebuffer operation) closed by
- can't reproduce: I don't see what could be causing glClear() to fail when drawing the …
- 2:09 PM Ticket #16038 (Crash on Mac waking from sleep) closed by
- duplicate: Qt crash in displayConfigFinalizedProc connecting or disconnecting an …
- 2:06 PM Ticket #16033 ("cartoon style modeStrand plank": NameError: name 'ribbons_drawing' is ...) closed by
- not a bug: Not sure how the reporter found the "modeStrand" option of the cartoon …
- 1:54 PM Ticket #10270 (need way to set full sequence of a chain) closed by
- fixed: The "sequence update" command, added on Jun 13th, does the second part …
- 12:39 PM ChangeLog edited by
- (diff)
- 12:00 PM Dev2024-9-23 edited by
- (diff)
- 11:48 AM Dev2024-9-23 edited by
- (diff)
- 11:43 AM Ticket #16045 (Crash in swap_buffers) closed by
- can't reproduce: version 1.3
- 11:23 AM Ticket #16042 (Crash in garbage collection) closed by
- duplicate
- 11:07 AM Ticket #16045 (Crash in swap_buffers) created by
- […]
- 10:55 AM Ticket #16037 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce
- 10:54 AM Ticket #16036 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:43 AM Ticket #16044 (Unknown crash) created by
- […]
- 9:54 AM Ticket #16043 (Inadequate OpenGL: Could not make opengl context current) created by
- […]
- 5:43 AM Ticket #16042 (Crash in garbage collection) created by
- […]
Sep 29, 2024:
- 8:20 PM Ticket #16041 ("close #": v.session is None) created by
- […]
- 7:41 PM Ticket #16040 (SEQCROW 2D Builder: urlopen error [Errno 11001] getaddrinfo failed) created by
- […]
- 6:23 PM Ticket #16039 (glClear: invalid framebuffer operation) created by
- […]
- 11:17 AM Ticket #16038 (Crash on Mac waking from sleep) created by
- […]
Sep 28, 2024:
Sep 27, 2024:
- 4:26 PM Ticket #16036 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:05 PM Ticket #16035 (Schol-AR gives "no session file found") created by
- […] Screenshot 2024-09-24 at 3.58.05 PM.png
- 1:40 PM Ticket #16034 (GLTF: Cannot center nodes because a node has both a mesh and children) created by
- As we discussed yesterday, I updated the NIH3D Workflows to …
- 12:52 PM Ticket #16033 ("cartoon style modeStrand plank": NameError: name 'ribbons_drawing' is ...) created by
- […]
- 11:55 AM Ticket #16032 (Crash opening large number of models) closed by
- can't reproduce: Yeah, I was able to open those 2000+ files without any issue on my Mac …
- 11:40 AM Ticket #16031 (Crash running modal dialog) closed by
- can't reproduce
- 11:36 AM Ticket #16029 (Crash while deleting atoms) closed by
- can't reproduce
- 6:03 AM Ticket #16032 (Crash opening large number of models) created by
- […]
- 3:23 AM Ticket #16031 (Crash running modal dialog) created by
- […]
Sep 26, 2024:
- 8:49 PM Ticket #16030 (Could not make graphics context current after various Qt context errors) created by
- […]
- 8:09 PM Ticket #16029 (Crash while deleting atoms) created by
- […]
- 7:43 PM Ticket #16028 (Crash in swap_buffers after various Qt context problems) created by
- […]
- 2:26 PM NIAID2024 edited by
- (diff)
- 2:23 PM NIAID2024 edited by
- (diff)
- 2:21 PM NIAID2024 edited by
- (diff)
- 1:56 PM Ticket #16027 (alphafold match failure with UniProt ID) created by
- […]
- 1:56 PM NIAID2024 edited by
- (diff)
- 1:54 PM NIAID2024 edited by
- (diff)
- 1:03 PM Ticket #16020 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt window toolkit crash in …
- 1:01 PM Ticket #16021 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt window toolkit crashed in …
- 12:58 PM Ticket #16025 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple's Intel Mac graphics driver crashed running ChimeraX. …
- 11:48 AM Dev2024-9-23 edited by
- (diff)
- 10:28 AM Ticket #16024 (Bad interaction of colors with "Background" target) closed by
- duplicate
- 10:26 AM Ticket #16022 (Bad interaction of colors with "Background" target) closed by
- duplicate: Hi Kelly, Thanks for reporting this problem. It was fixed about two …
- 7:57 AM Ticket #16026 (Problems in opening Chimera X 1.8) created by
- […]
- 1:55 AM Ticket #16025 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) created by
- […]
Sep 25, 2024:
- 11:02 PM Ticket #16024 (Bad interaction of colors with "Background" target) created by
- […]
- 6:12 PM Ticket #16023 (ChimeraX download problem) created by
- Hi, I've been trying to download ChimeraX on my personal computer …
- 4:51 PM Ticket #16022 (Bad interaction of colors with "Background" target) created by
- […]
- 3:09 PM Ticket #16019 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt in _NSViewHierarchyDidChangeBackingProperties probably …
- 3:07 PM Ticket #16017 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt in _NSViewHierarchyDidChangeBackingProperties probably …
- 2:29 PM Ticket #16021 (Crash on Mac waking from sleep) created by
- […]
- 10:40 AM Ticket #16020 (Crash on Mac waking from sleep) created by
- […]
- 10:23 AM Ticket #16013 (MOLE JSON treated as AlphaFold) closed by
- not a bug: Sorry about that change. AlphaFold PAE json files are much more …
- 9:05 AM Ticket #16016 (Crash in event loop) closed by
- can't reproduce
- 9:04 AM Ticket #16015 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:03 AM Ticket #16014 (Crash in garbage collection) closed by
- duplicate
- 8:52 AM NIAID2024 edited by
- (diff)
- 7:33 AM Ticket #16019 (Crash on Mac waking from sleep) created by
- […]
- 6:56 AM Ticket #16018 (ChimeraX does not start) created by
- […]
- 2:44 AM Ticket #16017 (Crash on Mac waking from sleep) created by
- […]
- 12:13 AM Ticket #16016 (Crash in event loop) created by
- […]
Sep 24, 2024:
- 6:54 PM Ticket #16015 (MemoryError opening mmCIF files) created by
- […]
- 5:53 PM Ticket #16014 (Crash in garbage collection) created by
- […]
- 4:55 PM WikiStart edited by
- (diff)
- 4:54 PM StartDaily edited by
- (diff)
- 4:53 PM StartDaily edited by
- (diff)
- 4:51 PM Ticket #16013 (MOLE JSON treated as AlphaFold) created by
- […]
- 4:00 PM Ticket #16012 (ChimeraX bug report submission) created by
- […] Screenshot 2024-09-24 at 3.58.05 PM.png
- 3:58 PM Ticket #16009 (Qt fatal error: Failed to initialize graphics backend for OpenG) closed by
- can't reproduce
- 3:57 PM Ticket #16008 (test) closed by
- not a bug
- 3:55 PM Ticket #16007 (test) closed by
- not a bug
- 3:55 PM Ticket #16011 (using Schol-AR tool, failure to create an augmentation for my project) created by
- […] [[Image(...)]]
- 3:55 PM Ticket #16010 (QTextHtmlParser::applyAttributes: Unknown color name '{link}') created by
- […] [[Image(...)]] […]
- 3:49 PM Ticket #16009 (Qt fatal error: Failed to initialize graphics backend for OpenG) created by
- […]
- 2:16 PM Ticket #16008 (test) created by
- […]
- 2:14 PM Ticket #16007 (test) created by
- […]
- 12:02 PM Ticket #16001 (Selection history holding reference to dead PseudobondGroup) closed by
- fixed: Fixed. Selection demotion and promotion for pseudobonds failed to …
- 11:40 AM Ticket #16005 (Graphics crash, macOS 14.6.1, Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:38 AM Ticket #16003 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt crash in displayConfigFinalizedProc connecting or disconnecting …
- 11:30 AM Ticket #15988 (Tried to add model but parent does not exist) closed by
- nonchimerax: ChimeraX could not open your session file. Probably you denied …
- 10:33 AM Ticket #16002 (Crash reading .cif file) closed by
- can't reproduce: Need the data to reproduce.
- 9:12 AM Ticket #16004 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 8:55 AM Ticket #16006 (Remote control crash) created by
- […]
- 8:49 AM Ticket #15999 (Crash in garbage collection) closed by
- duplicate
- 7:00 AM Ticket #16005 (Graphics crash, macOS 14.6.1, Iris Plus Graphics 655) created by
- […]
- 5:48 AM Ticket #16004 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Sep 23, 2024:
- 5:49 PM Ticket #16003 (Crash on Mac waking from sleep) created by
- […]
- 3:47 PM Ticket #16002 (Crash reading .cif file) created by
- […]
- 1:41 PM Ticket #16001 (Selection history holding reference to dead PseudobondGroup) created by
- […]
- 1:31 PM Ticket #7054 (Deiconifying ChimeraX after help viewer deleted gives error) closed by
- fixed: 1.4 had this behavior, but starting with 1.5 the behavior is gone. In …
- 1:10 PM Ticket #16000 (RFE: Remote display on a compute cluster) created by
- […] im hitting the size limit of what datasets i can process and …
- 12:55 PM Ticket #15999 (Crash in garbage collection) created by
- […]
- 12:19 PM Ticket #15997 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties …
- 12:18 PM Ticket #15996 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties …
- 12:16 PM Ticket #15995 (Open TIFF stack: not a TIFF file) closed by
- can't reproduce: User opened prv2023_tomo2_corrected_segm_try2_thr1_flip_cut.tiff that …
- 11:23 AM Ticket #15998 (Cannot update file history) created by
- […] ChimeraX Save Issue.txt
- 10:37 AM Ticket #15994 (Crash in garbage collection) closed by
- duplicate
- 10:36 AM Ticket #15993 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:34 AM Ticket #15992 (Could not instantiate StructureSeq.structure) closed by
- duplicate: Very similar to #15991
- 10:23 AM Ticket #15989 (Crash saving PNG) closed by
- can't reproduce
- 9:35 AM Ticket #15997 (Crash on Mac waking from sleep) created by
- […]
- 7:42 AM Ticket #15996 (Crash on Mac waking from sleep) created by
- […]
- 7:11 AM Ticket #15995 (Open TIFF stack: not a TIFF file) created by
- […]
- 6:39 AM Ticket #15994 (Crash in garbage collection) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
