Opened 8 years ago
Closed 13 months ago
#996 closed defect (fixed)
Issue reading PDB files
Reported by: | Owned by: | Eric Pettersen | |
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Priority: | normal | Milestone: | |
Component: | Input/Output | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description (last modified by )
Dear Developers I noticed that while ChimeraX can correctly import PDB files from RCSB, when trying to read PDB files locally, like those generated by MODELLER or other common programs it gives warnings and doesn’t open them. A work around is for example saving the same PDB in CIF using pymol and then ChimeraX can open it correctly. Best, Carlo _______ Department of Biosciences University of Milano Via Celoria 26 - 20133 Milano, Italy www: sites.unimi.it/camilloni <http://sites.unimi.it/camilloni> www: bioscienze.bio <http://bioscienzebio.unimi.it/>
Attachments (4)
Change History (9)
comment:1 by , 8 years ago
Component: | Unassigned → Input/Output |
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Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
comment:2 by , 8 years ago
Status: | accepted → feedback |
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follow-up: 3 comment:3 by , 8 years ago
Hi Eric Sorry for the late reply. This is a PDB file and a screenshot on Ubuntu 17.10. The same currently works well on my macbook. Cheers, Carlo _______ Department of Biosciences University of Milano Via Celoria 26 - 20133 Milano, Italy www: sites.unimi.it/camilloni <http://sites.unimi.it/camilloni> www: bioscienze.bio <http://bioscienzebio.unimi.it/>
comment:4 by , 8 years ago
Using the latest daily build of ChimeraX on Ubuntu 16.04, I can open the file you attached without any errors, and it successfully displays the structure. Maybe you need to get a newer version of ChimeraX? I'm not certain that will help because I don't recall any older versions having the problems you're having... Nonetheless, it's best to work with the latest version since that will help me debug the problem. Also, I opened the file by using the File->Open menu and browsing to it. How did you open it?
--Eric
comment:5 by , 13 months ago
Description: | modified (diff) |
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Resolution: | → fixed |
Status: | feedback → closed |
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Hi Carlo,
--Eric