![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 13 months ago
Closed 13 months ago
#16116 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.6-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 160000,
"procRole" : "Background",
"version" : 2,
"userID" : 504,
"deployVersion" : 210,
"modelCode" : "Mac13,1",
"coalitionID" : 14222,
"osVersion" : {
"train" : "macOS 14.6",
"build" : "23G80",
"releaseType" : "User"
},
"captureTime" : "2024-10-11 09:25:43.1911 -0400",
"codeSigningMonitor" : 1,
"incident" : "C1979533-5CA6-4290-B7C4-B07863D69716",
"pid" : 90698,
"translated" : true,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-10-09 18:25:00.1655 -0400",
"procStartAbsTime" : 2707486528799,
"procExitAbsTime" : 4059026810722,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "B6535E0C-F3FE-9719-EE42-ACCA382474C3",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 1,
"sleepWakeUUID" : "683A3FC2-5D4A-4885-BF73-C3A7E3F82870",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000002, 0x0000000000000000","rawCodes":[2,0],"type":"EXC_BREAKPOINT","signal":"SIGTRAP"},
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"os_fault" : {"process":"ChimeraX"},
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"name" : "HIToolbox"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703151239168,
"size" : 241656,
"uuid" : "861e8b79-f5c1-3677-8709-4aa33c77673c",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703151480832,
"size" : 49144,
"uuid" : "d70de43a-2804-340a-804c-5d316c1e013b",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703150645248,
"size" : 503796,
"uuid" : "69eca28c-bfb7-35bf-ad4f-1bece712d239",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 140703147065344,
"size" : 25769803776,
"uuid" : "25edf73b-f7d4-3fb7-8f45-5d510ef707ad"
},
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "9b334e5058b80479ab9d488c485f9e8a39bcd162",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "654439cdafbf5b61207873a9",
"factorPackIds" : {
},
"deploymentId" : 240000004
},
{
"rolloutId" : "64c17a9925d75a7281053d4c",
"factorPackIds" : {
"SIRI_AUDIO_DISABLE_MEDIA_ENTITY_SYNC" : "64d29746ad29a465b3bbeace"
},
"deploymentId" : 240000001
}
],
"experiments" : [
{
"treatmentId" : "c47ab4cc-c9c3-4b5d-a87c-e2433ce02597",
"experimentId" : "6639bc6ba73d460582162323",
"deploymentId" : 400000006
},
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
}
]
},
"reportNotes" : [
"PC register does not match crashing frame (0x0 vs 0x147CCE944)"
]
}
===== Log before crash start =====
Could not find tool "StarMap"
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_0.cif
Chain information for fold_n160_4na_ions_model_0.cif #1
---
Chain | Description
A B | .
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_1.cif
Chain information for fold_n160_4na_ions_model_1.cif #2
---
Chain | Description
A B | .
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_2.cif
Chain information for fold_n160_4na_ions_model_2.cif #3
---
Chain | Description
A B | .
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_3.cif
Chain information for fold_n160_4na_ions_model_3.cif #4
---
Chain | Description
A B | .
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_4.cif
Chain information for fold_n160_4na_ions_model_4.cif #5
---
Chain | Description
A B | .
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> open /Users/pod4001/Library/CloudStorage/OneDrive-
> WeillCornellMedicine/OCA2/OCA2_Phenix/RealSpaceRefine_160/real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb
Chain information for
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb
#6
---
Chain | Description
A | No description available
B | No description available
> ui tool show Matchmaker
> matchmaker #!6 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_n160_4na_ions_model_0.cif, chain A (#1) with
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6), sequence alignment score = 2061.6
RMSD between 413 pruned atom pairs is 0.745 angstroms; (across all 436 pairs:
3.039)
> open /Users/pod4001/Library/CloudStorage/OneDrive-
> WeillCornellMedicine/OCA2/OCA2_Phenix/RealSpaceRefine_171/real_space_refined_coot-1_ECDDel_real_space_refined_170-coot-0_real_space_refined_171.pdb
Chain information for
real_space_refined_coot-1_ECDDel_real_space_refined_170-coot-0_real_space_refined_171.pdb
#7
---
Chain | Description
A | No description available
B | No description available
> hide #!6 models
> ui tool show Matchmaker
> matchmaker #!7 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_n160_4na_ions_model_0.cif, chain A (#1) with
real_space_refined_coot-1_ECDDel_real_space_refined_170-coot-0_real_space_refined_171.pdb,
chain B (#7), sequence alignment score = 2624.4
RMSD between 372 pruned atom pairs is 0.789 angstroms; (across all 569 pairs:
4.353)
> show #!6 models
> set bgColor white
> set bgColor #ffffff00
> color #6 #81db88ff
> color #7 #ed918cff
> color #7 #ed8a95ff
> color #7 #ed809fff
> color #7 #ed6a9cff
> open /Users/pod4001/Downloads/1h7xCD_1gteA_0_1gteB_0.fiberdock.pdb
Summary of feedback from opening
/Users/pod4001/Downloads/1h7xCD_1gteA_0_1gteB_0.fiberdock.pdb
---
warnings | Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
7644 messages similar to the above omitted
Chain information for 1h7xCD_1gteA_0_1gteB_0.fiberdock.pdb #8
---
Chain | Description
A | No description available
B | No description available
> hide #!7 models
> hide #!6 models
> hide #1 models
> hide #!8 models
> show #1 models
> show #!6 models
> show #!7 models
> hide #!6 models
> show #!6 models
> hide #!7 models
> show #!7 models
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_0.cif
Chain information for fold_n160_4na_ions_2citric_acid_model_0.cif #9
---
Chain | Description
A B | .
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_1.cif
Chain information for fold_n160_4na_ions_2citric_acid_model_1.cif #10
---
Chain | Description
A B | .
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_2.cif
Chain information for fold_n160_4na_ions_2citric_acid_model_2.cif #11
---
Chain | Description
A B | .
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_3.cif
Chain information for fold_n160_4na_ions_2citric_acid_model_3.cif #12
---
Chain | Description
A B | .
> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_4.cif
Chain information for fold_n160_4na_ions_2citric_acid_model_4.cif #13
---
Chain | Description
A B | .
> hide #!7 models
> hide #!6 models
> hide #1 models
> hide #10 models
> hide #11 models
> hide #12 models
> hide #13 models
> show #!7 models
> show #!6 models
> show #1 models
> ui tool show Matchmaker
> matchmaker #9 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_n160_4na_ions_model_0.cif, chain B (#1) with
fold_n160_4na_ions_2citric_acid_model_0.cif, chain A (#9), sequence alignment
score = 3521.9
RMSD between 662 pruned atom pairs is 0.485 angstroms; (across all 679 pairs:
0.748)
> hide #!7 models
> hide #1 models
> ui tool show Matchmaker
> matchmaker #9 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with fold_n160_4na_ions_2citric_acid_model_0.cif, chain B (#9),
sequence alignment score = 2071.2
RMSD between 410 pruned atom pairs is 0.684 angstroms; (across all 436 pairs:
3.044)
> open /Users/pod4001/Library/CloudStorage/OneDrive-
> WeillCornellMedicine/OCA2/OCA2_Phenix/DockInMap_164/placed_model-coot-2.pdb
Chain information for placed_model-coot-2.pdb #14
---
Chain | Description
A | No description available
B | No description available
> ui tool show Matchmaker
> matchmaker #!14 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with placed_model-coot-2.pdb, chain A (#14), sequence alignment
score = 2295.9
RMSD between 447 pruned atom pairs is 0.189 angstroms; (across all 447 pairs:
0.189)
> hide #!14 models
> hide #9 models
> show #9 models
> show #!7 models
> hide #!7 models
> color #6 #ddc184ff
> save /Users/pod4001/Desktop/image36.png supersample 3
> color #6 #e0b879ff
> color #6 #e09f66ff
> color #6 #e09c43ff
> color #6 #e09134ff
> save /Users/pod4001/Desktop/image37.png supersample 3
> open /Users/pod4001/Downloads/AF-Q4LEV3-F1-model_v4.pdb
AF-Q4LEV3-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for OCA2 melanosomal transmembrane protein
(Q4LEV3) [more info...]
Chain information for AF-Q4LEV3-F1-model_v4.pdb #15
---
Chain | Description | UniProt
A | OCA2 melanosomal transmembrane protein | Q4LEV3_RAT 1-842
> hide #9 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> ui tool show Matchmaker
> matchmaker #15 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with AF-Q4LEV3-F1-model_v4.pdb, chain A (#15), sequence alignment
score = 1972.9
RMSD between 168 pruned atom pairs is 1.080 angstroms; (across all 436 pairs:
7.213)
> color #15 #31b75eff
> open /Users/pod4001/Downloads/oca2_dimers/oca2_dimer_in.pdb
Chain information for oca2_dimer_in.pdb #16
---
Chain | Description
A | No description available
> open /Users/pod4001/Downloads/oca2_dimers/oca2_dimer_out.pdb
Chain information for oca2_dimer_out.pdb #17
---
Chain | Description
A B | No description available
> hide #15 models
> hide #17 models
> ui tool show Matchmaker
> matchmaker #!16 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with oca2_dimer_in.pdb, chain A (#16), sequence alignment score =
2066.4
RMSD between 149 pruned atom pairs is 0.848 angstroms; (across all 436 pairs:
5.866)
> ui tool show Matchmaker
> matchmaker #17 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with oca2_dimer_out.pdb, chain A (#17), sequence alignment score
= 2031.2
RMSD between 338 pruned atom pairs is 1.048 angstroms; (across all 436 pairs:
1.891)
> show #17 models
> color #16 #b2bd66ff
> color #16 #b0ba65ff
> color #16 #6aba70ff
> color #16 #4f54baff
> hide #!16 models
> show #9 models
> show #!16 models
> hide #9 models
> hide #!16 models
> show #!16 models
> hide #17 models
> show #17 models
> hide #!16 models
> show #!16 models
> hide #17 models
> show #17 models
> hide #!16 models
> hide #17 models
> show #9 models
> ui tool show "Side View"
> ui mousemode right select
Drag select of 84 atoms, 211 residues, 63 bonds
> view sel
> select add #9
11475 atoms, 10952 bonds, 1468 residues, 2 models selected
> select add #6
17513 atoms, 17903 bonds, 4 pseudobonds, 2256 residues, 3 models selected
> select subtract #6
10700 atoms, 10938 bonds, 1364 residues, 1 model selected
> select subtract #9
Nothing selected
> save /Users/pod4001/Desktop/image38.png supersample 3
> select clear
Drag select of 64 atoms, 170 residues, 51 bonds
> view sel
> view
> view sel
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true
> lighting shadows false
> lighting flat
> lighting full
> lighting soft
> lighting simple
> ui mousemode right clip
> ui mousemode right select
> ui mousemode right tug
> ui mousemode right select
> view sel
===== Log before crash end =====
Log:
Could not find tool "StarMap"
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac
Model Identifier: Mac13,1
Model Number: Z14J0008GLL/A
Chip: Unknown
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 32 GB
System Firmware Version: 10151.140.19
OS Loader Version: 10151.140.19
Software:
System Software Overview:
System Version: macOS 14.6 (23G80)
Kernel Version: Darwin 23.6.0
Time since boot: 3 days, 23 hours, 36 minutes
Graphics/Displays:
Apple M1 Max:
Chipset Model: Apple M1 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 24
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Studio Display:
Display Type: Retina LCD
Resolution: 5120 x 2880 Retina
Display Serial Number: YCXY5CX3D4
Display Firmware Version: Version 17.0 (Build 21A329)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 13 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 13 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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