Timeline



Apr 23, 2024:

11:56 PM Ticket #15015 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:21 PM Ticket #14976 (Make blastprotein command load structures and alignment without GUI) closed by Zach Pearson
fixed: I've pushed the changes. YMMV, it was fast for an Alphafold version 2 …
8:30 PM Ticket #15014 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
7:47 PM Ticket #15013 (Dragging docked tool logs "Already setting window visible!") created by goddard@…
[…]
4:09 PM Ticket #15012 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
3:57 PM Ticket #15004 (ArtiaX dependency not installed) closed by Greg Couch
limitation: Any version number change should work. ChimeraX uses pip to install …
2:03 PM Ticket #15011 (Alt locs in 7b6w not coalesced) created by Elaine Meng
In 7b6w residue T0B, the alternate locations are separate atoms, …
1:38 PM Ticket #14993 (No models) closed by pett
fixed: Glad you got it working!
11:58 AM Ticket #15009 (MD Viewer: self.atomLocation[0]: list index out of range) closed by pett
not a bug: Not a multi-model PDB file
11:42 AM Ticket #15006 (Crash in event loop) closed by pett
can't reproduce
11:39 AM Ticket #15005 (Crash in garbage collection) closed by pett
duplicate
11:04 AM Ticket #15010 (Better assignment of BLAST results to sequences) created by Tom Goddard
From Tom's ticket, #14976: Besides these 3 new options I also want …
11:01 AM Dev2024-4-29 created by Tom Goddard
10:59 AM 2024-4-25 created by Tom Goddard
10:58 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:53 AM Ticket #15009 (MD Viewer: self.atomLocation[0]: list index out of range) created by chimerax-bug-report@…
[…]
9:51 AM Ticket #15008 (Clipper: 'NoneType' object has no attribute 'dim') created by rajnandani.kashyap@…
[…]
9:47 AM Ticket #15007 (Clipper: 'NoneType' object has no attribute 'dim') created by chimerax-bug-report@…
[…]

Apr 22, 2024:

9:53 PM Ticket #15006 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:50 PM Ticket #14982 (combine command: ValueError: Illegal chain ID character: 'Α') closed by pett
not a bug: This PDB file has unicode Greek capital letter A (0391) instead of …
5:03 PM Ticket #15005 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
4:23 PM Dev2024-4-22 edited by Tom Goddard
(diff)
4:15 PM Ticket #15004 (ArtiaX dependency not installed) created by johutchings@…
[…]
1:52 PM Ticket #14990 (Surface Color tool: list index out of range) closed by Tom Goddard
duplicate: User had colormap on volume surface with more than 8 colors and then …
1:38 PM Ticket #14989 (Crash changing volume level) closed by Tom Goddard
nonchimerax: This ChimeraX crashed happened in Apple's OpenGL graphics driver (in …
1:37 PM Ticket #15002 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
1:24 PM Ticket #15003 (PICKLUSTER: handle_scheme: KeyError: 'chain1') created by nicollesolangepb@…
[…]
12:49 PM Ticket #15002 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
12:29 PM Ticket #15000 (Crash saving atomic session state) closed by pett
duplicate: Duplicate of #14998
12:28 PM Ticket #14999 (Crash saving atomic session state) closed by pett
duplicate: More or less a duplicate of #14998
12:27 PM Ticket #15001 (Links to example files in Toolshed Building and Distributing bundles ...) created by deng.luo@…
Roden Luo points out that links to example code files are missing in …
12:26 PM Ticket #14998 (Crash saving atomic session state) closed by pett
can't reproduce: No good indication of the actual cause of the crash
12:14 PM Ticket #14997 (ISOLDE: ResidueStepper references dead Structure) closed by pett
duplicate: Duplicate of #14631
12:01 PM Ticket #14994 (Crash in check_for_changes) closed by pett
can't reproduce
11:52 AM Ticket #14991 (ISOLDE: crash in _set_global_k) closed by Tristan Croll
can't reproduce: Yeah - that's almost certainly obsolete.
11:03 AM Ticket #14988 (Cannot write into Modeller temporary folder) closed by pett
nonchimerax: Hi Robert, If you do not specify a specific folder for Modeller to …
10:51 AM Ticket #14987 (Crash in garbage collection) closed by pett
duplicate
10:49 AM Ticket #14986 (Crash in garbage collection) closed by pett
duplicate: Hi Whitney, Thanks for reporting this problem. We believe it is fixed …
10:46 AM Ticket #14985 (Infinite loop in OpenCommands) closed by pett
fixed: I'm guessing the commands that got run opened another file of the same …
9:34 AM Ticket #15000 (Crash saving atomic session state) created by chimerax-bug-report@…
[…]
9:31 AM Ticket #14999 (Crash saving atomic session state) created by chimerax-bug-report@…
[…]
9:30 AM Ticket #14998 (Crash saving atomic session state) created by chimerax-bug-report@…
[…]
9:20 AM Ticket #14997 (ISOLDE: ResidueStepper references dead Structure) created by chimerax-bug-report@…
[…]
9:16 AM Ticket #14996 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
1:59 AM Ticket #14995 (ArtiaX: cannot load Dynamo table: could not convert string to float) created by karin.mazmanian@…
[…]

Apr 21, 2024:

10:56 PM Ticket #14994 (Crash in check_for_changes) created by chimerax-bug-report@…
[…]
10:26 PM Ticket #14993 (No models) created by leodoned@…
[…]
9:23 PM Ticket #14992 (Crash in QWindowSystemInterface::handleFileOpenEvent) created by jitued@…
[…]
6:31 PM Ticket #14991 (ISOLDE: crash in _set_global_k) created by chimerax-bug-report@…
[…]
3:32 PM Ticket #14990 (Surface Color tool: list index out of range) created by chimerax-bug-report@…
[…]
12:44 AM Ticket #14989 (Crash changing volume level) created by ranz@…
[…]

Apr 20, 2024:

5:32 PM Ticket #14988 (Cannot write into Modeller temporary folder) created by robertperezmd@…
[…] TAPV-5F1B Chain A MSA.fasta
4:09 PM Ticket #14987 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:34 AM Ticket #14986 (Crash in garbage collection) created by ywyin@…
[…]
8:07 AM Ticket #14985 (Infinite loop in OpenCommands) created by chimerax-bug-report@…
[…]

Apr 19, 2024:

1:20 PM Ticket #14971 (surface dust not working in a multi-line script) closed by Tom Goddard
fixed: Fixed. The "wait 1" is no longer needed to get volume surfaces to be …
10:38 AM Ticket #14963 (Alphafold prediction send sequence to Google Colab returned: None) closed by Tom Goddard
can't reproduce: No reply from reporter.
10:37 AM Ticket #14984 (Crash in event loop. Linux. No useful details.) closed by Tom Goddard
can't reproduce
10:35 AM Ticket #14983 (Garbage collection crash) closed by Tom Goddard
duplicate
10:30 AM Ticket #14981 (Coulombic command: UnboundLocalError: local variable 'cmap' referenced ...) closed by Tom Goddard
fixed: Fixed probably long ago. Report is from ancient ChimeraX 1.1!
10:27 AM Ticket #14979 (Graphics crash, macOS 11.7.10, NVIDIA GeForce GT 750M) closed by Tom Goddard
nonchimerax
4:48 AM Ticket #14984 (Crash in event loop. Linux. No useful details.) created by chimerax-bug-report@…
[…]
2:06 AM Ticket #14983 (Garbage collection crash) created by chimerax-bug-report@…
[…]

Apr 18, 2024:

8:53 PM Ticket #14982 (combine command: ValueError: Illegal chain ID character: 'Α') created by chimerax-bug-report@…
[…]
8:51 PM Ticket #14981 (Coulombic command: UnboundLocalError: local variable 'cmap' referenced ...) created by chimerax-bug-report@…
[…]
7:29 PM Ticket #14980 (False "BLAST job failed" error on session restore) created by goddard@…
[…] braf_23.cxs
5:52 PM 2024-4-18 edited by Tom Goddard
(diff)
5:27 PM Ticket #14979 (Graphics crash, macOS 11.7.10, NVIDIA GeForce GT 750M) created by chimerax-bug-report@…
[…]
3:46 PM Ticket #14973 (Crash in event loop after RCSB fetch failed) closed by Tom Goddard
can't reproduce
3:43 PM Ticket #14972 (Crash in garbage collection while DockPrep deleting alt-locs) closed by Tom Goddard
duplicate
3:41 PM Ticket #14970 (Crash in QTabBar:paintEvent(). QPainter::begin: Paint device returned ...) closed by Tom Goddard
can't reproduce: Probable Qt bug. Crashed in Qt with more than 80 models open, two …
1:40 PM Ticket #14975 (Graphics crash, macOS 14.4, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
1:37 PM Ticket #14974 (Crash splitting molecule) closed by Tom Goddard
can't reproduce
1:16 PM Ticket #14978 (ChimeraX bug report submission) closed by Tom Goddard
not a bug
12:38 PM Ticket #14978 (ChimeraX bug report submission) created by goddard@…
[…]
12:30 PM Ticket #14977 (Toolshed updates: IndexError: tuple index out of range) created by goddard@…
[…]
12:21 PM Ticket #14976 (Make blastprotein command load structures and alignment without GUI) created by Tom Goddard
I'd like 3 new options to the blastprotein command blastprotein …
7:44 AM Ticket #14975 (Graphics crash, macOS 14.4, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
7:01 AM Ticket #14974 (Crash splitting molecule) created by gabriel.alves2@…
[…] 7jjo.pdb
2:49 AM Ticket #14973 (Crash in event loop after RCSB fetch failed) created by chimerax-bug-report@…
[…]
2:45 AM Ticket #14972 (Crash in garbage collection while DockPrep deleting alt-locs) created by chimerax-bug-report@…
[…]

Apr 17, 2024:

11:53 PM Ticket #14971 (surface dust not working in a multi-line script) created by esa-pekka.kumpula@…
[…]
11:40 PM Ticket #14970 (Crash in QTabBar:paintEvent(). QPainter::begin: Paint device returned ...) created by chimerax-bug-report@…
[…]
3:13 PM Ticket #14968 (Silhouettes artifacts when saving image) closed by Tom Goddard
nonchimerax: Unfortunately only Apple can fix the OpenGL graphics driver and they …
1:50 PM Ticket #14969 (Test) closed by pett
not a bug
1:42 PM Ticket #14969 (Test) created by pett
[…]
1:04 PM Ticket #14967 (Test) closed by pett
not a bug
11:48 AM Ticket #14968 (Silhouettes artifacts when saving image) created by mxe634@…
[…] [[Image(...)]] smime.p7s
11:45 AM Ticket #14967 (Test) created by pett
[…]
10:24 AM Ticket #14962 (Setting background color with RGB sliders not working) closed by pett
fixed: Well, "fixed", but because of some systems at UCSF being down the fix …

Apr 16, 2024:

11:24 AM Ticket #14966 (Make fitmap search use random placements within the target volume envelope) created by Tom Goddard
Roden Luo the developer of DiffFit points out that choosing the center …
11:11 AM Dev2024-4-22 created by Tom Goddard
11:10 AM 2024-4-11 edited by Tom Goddard
(diff)
11:09 AM 2024-4-18 created by Tom Goddard
11:07 AM DeveloperMeetings edited by Tom Goddard
(diff)
8:06 AM Ticket #7936 (ResidueStepper refers to dead Structure) closed by Tristan Croll
fixed: Sorry for the ridiculously long wait, but this will be fixed in the …
8:05 AM Ticket #8772 (isolde residue stepper referencing dead structure) closed by Tristan Croll
fixed: See #14894.
8:04 AM Ticket #8877 (ResidueStepper referencing dead structure) closed by Tristan Croll
fixed: Sorry it's taken such a long time, but this is now fixed. See #14894
8:03 AM Ticket #9523 (ISOLDE ResidueStepper holding reference to dead structure) closed by Tristan Croll
fixed: Sorry it's taken such a ridiculously long time, but this will be fixed …
8:03 AM Ticket #14538 (ISOLDE: ResidueStepper: self.positions is None) closed by Tristan Croll
fixed: See #14894.
8:02 AM Ticket #14599 (ISOLDE session save: ResidueStepper referenced closed AtomicStructure) closed by Tristan Croll
fixed: See #14894.
8:01 AM Ticket #14631 (ISOLDE: ResidueStepper references dead Structure) closed by Tristan Croll
fixed: Fixed (finally!). See #14894.
8:00 AM Ticket #14828 (ISOLDE: ResidueStepper holding reference to closed structure) closed by Tristan Croll
fixed: See #14894.
7:49 AM Ticket #14894 (ISOLDE: ResidueStepper holding reference to closed structure) closed by Tristan Croll
fixed: A neat solution, and works beautifully. After …

Apr 15, 2024:

4:02 PM Dev2024-4-15 edited by Tom Goddard
(diff)
3:27 PM Ticket #14661 (PDB-REDO: Unknown polymer entity) closed by Greg Couch
fixed: Fixed in daily release.
2:20 PM Ticket #14965 (Windowsize typo crashes ChimeraX.) closed by Tom Goddard
limitation: Thanks for reporting the problem. I tried "windowsize 850850" on Mac …
12:14 PM ChangeLog edited by Elaine Meng
(diff)

Apr 12, 2024:

6:09 PM Ticket #14965 (Windowsize typo crashes ChimeraX.) created by ecrofut@…
[…]
3:54 PM Ticket #14914 (Allow Quest passthrough video for PC VR) closed by Tom Goddard
fixed: Implemented passthrough. Uses new xr command option passthrough with …
12:20 PM Ticket #14933 (ChimeraX GLTF embedded in PowerPoint has bad lighting) closed by Tom Goddard
nonchimerax
11:52 AM Ticket #14964 (Update RealSense toolshed bundle for use with Python 3.11) closed by Tom Goddard
fixed: Added RealSense bundle to Toolshed compatible with current ChimeraX …
11:51 AM Ticket #14964 (Update RealSense toolshed bundle for use with Python 3.11) created by ceubanks@…
Subject: [chimerax-users] Download issue for Realsense plugin Date: …
8:13 AM Ticket #14963 (Alphafold prediction send sequence to Google Colab returned: None) created by danesh_moazed@…
Hi, I am trying to do structure predictions using AlphaFold in …
7:49 AM Ticket #14962 (Setting background color with RGB sliders not working) created by Ute.Roehrig@…
[…] Screenshot 2024-04-12 at 16.42.09.png

Apr 11, 2024:

4:37 PM Ticket #14841 (Qt6WebEngineCore) closed by pett
fixed
4:33 PM 2024-4-11 edited by pett
(diff)
3:26 PM 2024-4-11 edited by Tom Goddard
(diff)
3:26 PM 2024-4-11 edited by Tom Goddard
(diff)
2:54 PM Ticket #14959 (AlphaFold Prediction Requires Newer ChimeraX) closed by Tom Goddard
not a bug: You can either delete your previous ChimeraX or rename it when you …
2:25 PM Ticket #14961 (Angle tool allows decimal places to go to -1) closed by pett
duplicate: Hi Jason, Thanks for reporting this problem. It was reported a few …
2:23 PM Ticket #14960 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Dmitrii, Thanks for reporting this problem. This is a bug …
2:03 PM NIAID2024 edited by Elaine Meng
(diff)
2:01 PM NIAID2024 edited by Elaine Meng
(diff)
1:23 PM Ticket #14961 (Angle tool allows decimal places to go to -1) created by key@…
[…]
12:57 PM Ticket #14960 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by dmitrii.shiriaev@…
[…]
12:11 PM Ticket #14959 (AlphaFold Prediction Requires Newer ChimeraX) created by Pradip.Singh@…
[…]
12:02 PM Ticket #14956 (Crash in swap_buffers) closed by Tom Goddard
can't reproduce: Possible graphics driver bug, Mesa 22.3.5, RTX 4090 GPU.
10:28 AM Ticket #14958 (Crash in garbage collection) closed by pett
duplicate
10:26 AM Ticket #14957 (Crash in python_instances_of_class) closed by pett
duplicate
10:23 AM Ticket #14955 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
10:22 AM Ticket #14954 (Crash in garbage collection) closed by pett
duplicate
10:12 AM Ticket #14958 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:00 AM Ticket #14953 (Crash in garbage collection) closed by pett
duplicate
9:59 AM Ticket #14952 (Crash in garbage collection) closed by pett
duplicate: Hi Mark, Thanks for reporting this problem. We believe it is fixed in …
9:55 AM Ticket #14951 (Crash in garbage collection) closed by pett
can't reproduce: So there must be another garbage-collection-related bug, since this is …
9:36 AM Ticket #14957 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
6:01 AM Ticket #14956 (Crash in swap_buffers) created by chimerax-bug-report@…
[…]
2:17 AM Ticket #14955 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]

Apr 10, 2024:

11:41 PM Ticket #14954 (Crash in garbage collection) created by yakonfire@…
[…]
11:34 PM Ticket #14953 (Crash in garbage collection) created by yakonfire@…
[…]
11:00 PM Ticket #14952 (Crash in garbage collection) created by yakonfire@…
[…]
3:15 PM Ticket #14951 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
3:02 PM Ticket #14950 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate
3:00 PM Ticket #14949 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
can't reproduce
11:54 AM Ticket #14950 (Histogram widget: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]
11:30 AM Ticket #14949 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
11:19 AM Ticket #14942 (MOE docking results) closed by pett
fixed: Okay, tomorrow's build will support the MOE files you supplied in …
11:12 AM phenix-4-11-24 edited by pett
(diff)
10:37 AM Ticket #14947 (Crash changing display configuration, Mac, AMD and Intel graphics, 2 ...) closed by Tom Goddard
nonchimerax: Probable Qt bug, 2 displays on Mac, AMD graphics.
10:00 AM Ticket #14948 (available.categories is empty) created by chimerax-bug-report@…
[…]
9:14 AM Ticket #14945 (Crash in Chromium backend) closed by pett
can't reproduce
7:53 AM Ticket #14947 (Crash changing display configuration, Mac, AMD and Intel graphics, 2 ...) created by chimerax-bug-report@…
[…]
3:29 AM Ticket #14946 (ISOLDE: 'NoneType' object has no attribute 'triggers') created by chimerax-bug-report@…
[…]
12:53 AM Ticket #14945 (Crash in Chromium backend) created by chimerax-bug-report@…
[…]

Apr 9, 2024:

5:43 PM Ticket #14943 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
5:32 PM Ticket #14944 (Crash processing mouse event) closed by pett
can't reproduce
5:08 PM phenix-4-11-24 edited by pett
(diff)
2:07 PM phenix-4-11-24 edited by pett
(diff)
1:45 PM Ticket #14944 (Crash processing mouse event) created by chimerax-bug-report@…
[…]
1:21 PM phenix-4-11-24 edited by pett
(diff)
1:19 PM phenix-4-11-24 edited by pett
(diff)
11:52 AM phenix-4-11-24 created by pett
11:52 AM Features edited by pett
(diff)
11:36 AM Ticket #14880 (defattr Attribute File recipient value molecules or structures) closed by pett
fixed: Actually, the *code* already supports all the features I outlined, as …
10:49 AM Ticket #14941 (chimeraX silhouette look spotty) closed by Tom Goddard
nonchimerax: Unfortunately this is a known problem with one specific old Intel …
10:43 AM Ticket #14940 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:39 AM Ticket #14943 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by chimerax-bug-report@…
[…]
10:39 AM Ticket #14942 (MOE docking results) created by RKrishnan@…
Hi Eric, Thanks. I have attached a mol2 format file saved from moe …
10:27 AM Dev2024-4-15 created by Tom Goddard
10:26 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:25 AM 2024-4-4 edited by Tom Goddard
(diff)
10:22 AM 2024-4-11 created by Tom Goddard
10:21 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:30 AM Ticket #14941 (chimeraX silhouette look spotty) created by wchen@…
[…] Screenshot.png
9:08 AM Ticket #14939 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:06 AM Ticket #14940 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by chimerax-bug-report@…
[…]
9:03 AM Ticket #14938 (MemoryError opening mmCIF files) closed by pett
duplicate
5:34 AM Ticket #14939 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:09 AM Ticket #14938 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]

Apr 8, 2024:

5:41 PM Ticket #14930 (Problem reading .dx map: could not convert string to float: b'attribute') closed by Tom Goddard
can't reproduce: ChimeraX only handles 3d maps in OpenDX format (.dx). The file the …
5:13 PM Ticket #14935 (cpuinfo launches new ChimeraX) closed by Tom Goddard
fixed: Fixed. The PyTables version 3.9.2 in its leaf.py runs when it is …
5:01 PM Ticket #14926 (EMAN2 HDF5 file: cannot import name '_broken_hdf5_long_double' from ...) closed by Tom Goddard
fixed
4:44 PM Ticket #14937 (Crash in python_instances_of_class) closed by pett
duplicate
4:43 PM Ticket #14936 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') closed by pett
duplicate
4:41 PM Ticket #14932 (OpenGL error) closed by Greg Couch
wontfix
4:18 PM Dev2024-4-8 edited by Tom Goddard
(diff)
3:06 PM Dev2024-4-8 created by Tom Goddard
3:04 PM DeveloperMeetings edited by Tom Goddard
(diff)
2:41 PM Ticket #14937 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
2:34 PM Ticket #14936 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by chimerax-bug-report@…
[…]
2:14 PM Ticket #14935 (cpuinfo launches new ChimeraX) created by goddard@…
[…]
1:24 PM Ticket #14934 (Daily build "developer cannot be verified") created by goddard@…
[…]
1:13 PM Ticket #14927 (Graphics driver crash) closed by pett
can't reproduce
12:49 PM Ticket #14933 (ChimeraX GLTF embedded in PowerPoint has bad lighting) created by phil.cruz@…
From the March 28, 2024 NIAID ChimeraX meeting: Phil: ChimeraX gltf …
12:34 PM Ticket #14929 (Crash in garbage collection) closed by pett
duplicate
12:26 PM Ticket #14932 (OpenGL error) created by matus.marton@…
[…]
12:18 PM Ticket #14925 (Crash in garbage collection) closed by pett
duplicate: Hi Abhi, Thanks for reporting this problem. We believe it is fixed in …
12:15 PM Ticket #14924 (Crash in python_instances_of_class) closed by pett
duplicate
12:14 PM Ticket #14923 (Crash in garbage collection) closed by pett
duplicate
12:13 PM Ticket #14922 (Crash in python_instances_of_class) closed by pett
duplicate
12:11 PM Ticket #14921 (Crash in python_instances_of_class) closed by pett
duplicate
12:10 PM Ticket #14920 (Crash in garbage collection) closed by pett
duplicate
12:08 PM ChangeLog edited by Elaine Meng
(diff)
12:06 PM Ticket #14919 (Log volume level: local variable 'levels' referenced before assignment) closed by pett
duplicate: ChimeraX 0.94!
12:05 PM Ticket #14918 (Graphics driver crash) closed by pett
can't reproduce
11:58 AM Ticket #14913 (AlphaFold: File is not a zip file) closed by Tom Goddard
can't reproduce: Appears that the downloaded results.zip file may have been truncated. …
10:45 AM Ticket #14916 (KeyError: "No known data format 'mtz'") closed by pett
duplicate
10:44 AM Ticket #14915 (Crash setting volume level) closed by pett
limitation
10:26 AM Ticket #14931 (QGLXContext: Failed to create dummy context) created by chimerax-bug-report@…
[…]
9:21 AM Ticket #14930 (Problem reading .dx map: could not convert string to float: b'attribute') created by chimerax-bug-report@…
[…]
7:58 AM Ticket #14929 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:37 AM Ticket #14928 (Problem handling SEQCROW job error(?)) created by chimerax-bug-report@…
[…]

Apr 7, 2024:

10:40 PM Ticket #14927 (Graphics driver crash) created by chimerax-bug-report@…
[…]
11:16 AM Ticket #14926 (EMAN2 HDF5 file: cannot import name '_broken_hdf5_long_double' from ...) created by btn1@…
[…] threed_09.hdf
11:10 AM Ticket #14925 (Crash in garbage collection) created by abhinaba.das@…
[…]
9:47 AM Ticket #14924 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
9:30 AM Ticket #14923 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
9:24 AM Ticket #14922 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
9:18 AM Ticket #14921 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
7:12 AM Ticket #14920 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
6:54 AM Ticket #14919 (Log volume level: local variable 'levels' referenced before assignment) created by chimerax-bug-report@…
[…]
5:13 AM Ticket #14918 (Graphics driver crash) created by chimerax-bug-report@…
[…]
1:24 AM Ticket #14917 (Angle tool allows decimal places to go to -1) created by chimerax-bug-report@…
[…]

Apr 6, 2024:

4:54 AM Ticket #14916 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
4:19 AM Ticket #14915 (Crash setting volume level) created by chimerax-bug-report@…
[…]

Apr 5, 2024:

5:42 PM Ticket #14914 (Allow Quest passthrough video for PC VR) created by meghan.mccarthy@…
Want to be able to use passthrough video on Quest 3 headsets with …
5:35 PM Ticket #14913 (AlphaFold: File is not a zip file) created by chimerax-bug-report@…
[…]
4:17 PM Ticket #10436 (Make VR hand controller button deactivation mode) closed by Tom Goddard
fixed: Done. I added a VR "button lock" button mode. You can assign this …
3:36 PM Ticket #14601 (openvr.error_code.CompositorError_TextureUsesUnsupportedFormat) closed by Tom Goddard
can't reproduce: No response from reporter.
3:34 PM Ticket #6845 (Adjust VR controller button layout for different controllers) closed by Tom Goddard
wontfix: Meta Quest completely dominates the VR market so I think only their …
3:28 PM Ticket #9641 (VR glitches on Nvidia 4070 Ti graphics) closed by Tom Goddard
fixed: We tried disabling Async spacewarp at the NIH BioViz lab during our …
3:06 PM Ticket #14912 (SEQCROW failure computing buried volume) created by neryvillegas@…
[…] double_AlI.log
3:01 PM Ticket #14911 (Add H.265 video encoding to the movie encode command) created by Tom Goddard
The movie encode command currently use H.264 video codec by default. …
11:56 AM Ticket #14910 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by chimerax-bug-report@…
[…]
10:50 AM Ticket #14909 (xdg-open of html files on RHEL 9 invokes ChimeraX instead of web browser) created by Guillaume Gaullier <guillaume.gaullier@…>
Hello, I encountered an annoying behavior of ChimeraX on Rocky Linux …
6:06 AM Ticket #14908 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]

Apr 4, 2024:

7:32 PM Ticket #14907 (Clipper: 'SymmetryManager' object has no attribute 'spacegroup') created by tmckeith@…
[…]
6:31 PM Ticket #14901 (Problem getting matrix origin while saving map in session) closed by Tom Goddard
fixed: Fixed. Saving a flipped volume in a session was broken by a code …
5:25 PM Ticket #14906 (RFE: Start core tools before initializing bundles) closed by Zach Pearson
wontfix: That's a much better idea!
4:22 PM Ticket #14879 (Better handling of conflicting defattr registration) closed by pett
fixed: Re-registration by defattr now only warns instead of raising an error.
4:13 PM Ticket #14906 (RFE: Start core tools before initializing bundles) created by Zach Pearson
By 'core tools' I mean the toolbar, rapid access menu, log, model …
3:18 PM Ticket #14905 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
2:59 PM Ticket #14904 (KeyError: "No known data format 'mtz'") closed by pett
can't reproduce: The following daily build had this fixed.
2:56 PM Ticket #14902 (UnicodeDecodeError reading PDB file) closed by pett
can't reproduce: Already trying UTF-8/16/32; would need file to determine solution
2:38 PM Ticket #14900 (Crash in python_instances_of_class) closed by pett
duplicate
2:34 PM Ticket #14896 (Crash in closest_atom_by_template reading mmCIF) closed by Greg Couch
can't reproduce: Need test case.
2:32 PM Ticket #14898 (Crash deleting hydrogens) closed by pett
can't reproduce: Chuck's next ticket () seems more tractable to work with, so …
12:17 PM Ticket #14904 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
8:59 AM Ticket #14903 (ChimeraX 1.7.1 Alma8/Alma9 menus not working) created by vincent@…
[…]
7:28 AM Ticket #14902 (UnicodeDecodeError reading PDB file) created by chimerax-bug-report@…
[…]
1:14 AM Ticket #14901 (Problem getting matrix origin while saving map in session) created by linan_9095@…
[…]
12:20 AM Ticket #14900 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]

Apr 3, 2024:

11:01 PM Ticket #14899 (Crash deleting hydrogens) created by sindelar@…
[…]
10:54 PM Ticket #14898 (Crash deleting hydrogens) created by sindelar@…
[…]
5:35 PM Ticket #14872 (swapaa mousemode assigns -1 serial numbers) closed by Tom Goddard
wontfix: Given there seems to be no problem with atom serial numbers = -1 I'm …
5:09 PM Ticket #14897 (fitmap search is assuming local model positions are the same as scene ...) created by goddard@…
[…]
5:06 PM Ticket #14863 (fitmap search variable fitting results) closed by Tom Goddard
fixed: Ok, I added a "seed" option to the fitmap command used only if the …
3:07 PM Ticket #14896 (Crash in closest_atom_by_template reading mmCIF) created by chimerax-bug-report@…
[…]
2:38 PM Ticket #14895 (Port measure contactArea command from chimera) closed by Tom Goddard
fixed: Done. Same options and behavior as in Chimera except second surface …
2:36 PM Ticket #14895 (Port measure contactArea command from chimera) created by Tom Goddard
On Mar 31, 2024, at 7:59 PM, Krishnan Raman wrote: …
1:10 PM Ticket #14893 (error evaluating selector) closed by pett
can't reproduce: Tried a few things but couldn't reproduce the selector problem. I …
12:01 PM Ticket #14892 (Crash in garbage collection) closed by pett
duplicate
11:58 AM Ticket #14891 (KeyError: "No known data format 'mtz'") closed by pett
duplicate
11:55 AM Ticket #14890 (KeyError: "No known data format 'mtz'") closed by pett
duplicate
11:52 AM Ticket #14889 (KeyError: "No known data format 'mtz'") closed by pett
duplicate
11:49 AM Ticket #14888 (KeyError: "No known data format 'mtz'") closed by pett
duplicate
11:48 AM Ticket #14887 ('Sequence' object has no attribute 'structure') closed by pett
can't reproduce
11:44 AM Ticket #14886 ('Sequence' object has no attribute 'structure') closed by pett
can't reproduce: Going to be entirely different in the daily build now that Chains are …
11:29 AM Ticket #14883 (KeyError matching selected regions) closed by pett
duplicate
11:17 AM Ticket #14881 (Crash in garbage collection) closed by pett
duplicate
10:52 AM Ticket #14894 (ISOLDE: ResidueStepper holding reference to closed structure) created by chimerax-bug-report@…
[…]
10:35 AM Ticket #14878 (KeyError: "No known data format 'mtz'") closed by pett
duplicate
10:24 AM Ticket #14876 (KeyError: "No known data format 'mtz'") closed by pett
duplicate
10:17 AM Ticket #14893 (error evaluating selector) created by chimerax-bug-report@…
[…]
9:58 AM Ticket #14892 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
9:01 AM Ticket #14891 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
6:29 AM Ticket #14890 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
5:33 AM Ticket #14889 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
5:22 AM Ticket #14888 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
5:21 AM Ticket #14887 ('Sequence' object has no attribute 'structure') created by chimerax-bug-report@…
[…]
5:21 AM Ticket #14886 ('Sequence' object has no attribute 'structure') created by chimerax-bug-report@…
[…]
5:20 AM Ticket #14885 (ISOLDE: No compatible OpenCL platform is available) created by chimerax-bug-report@…
[…]
3:59 AM Ticket #14884 (ISOLDE: crash in "isolde sim") created by chimerax-bug-report@…
[…]
2:14 AM Ticket #14883 (KeyError matching selected regions) created by chimerax-bug-report@…
[…]
1:31 AM Ticket #14882 (Bundle ChimeraX-NMRSTAR has no module) created by chimerax-bug-report@…
[…]
12:29 AM Ticket #14881 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Apr 2, 2024:

9:45 PM Ticket #14880 (defattr Attribute File recipient value molecules or structures) created by ccaffalett@…
[…]
9:19 PM Ticket #14879 (Better handling of conflicting defattr registration) created by chimerax-bug-report@…
[…]
7:33 PM Ticket #14729 (map_series: model is None) closed by Tom Goddard
duplicate: User closed one volume of a series. I believe the ChimeraX volume …
7:30 PM Ticket #14773 (ArrayMemoryError copying buffer when restoring map) closed by Tom Goddard
limitation: Out of memory trying to allocate 892 Mbytes for a volume saved in a …
7:28 PM Ticket #14784 (glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: Drawing silhouettes, no back buffer. Probable graphics driver bug.
7:27 PM Ticket #14805 (Graphics crash, macOS 13.4, Intel Iris Plus Graphics 640) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
7:25 PM Ticket #14808 (Crash drawing scene) closed by Tom Goddard
can't reproduce: User opened a map of size 768,256,768 float32, about 500 Mbytes in …
7:21 PM Ticket #14811 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
7:19 PM Ticket #14816 (Framebuffer incomplete) closed by Tom Goddard
can't reproduce: Looks like a graphics driver bug.
7:17 PM Ticket #14822 (glClearColor: out of memory) closed by Tom Goddard
can't reproduce
6:49 PM Ticket #14878 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
3:23 PM Ticket #14877 (Medical imaging on toolshed) created by Zach Pearson
Our most recent NIAID contract asks us to explore putting ChimeraX's …
2:07 PM Ticket #14876 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
11:43 AM Ticket #14874 (Have PDB-Redo fetch of mtz automatically fetch and associate pdb-redo ...) created by goddard@…
[…]
11:20 AM 2024-4-4 created by Tom Goddard
11:19 AM Ticket #14873 (Some kind of crash giving a widget focus) closed by pett
can't reproduce
11:19 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:10 AM Ticket #14871 (Crash in event loop) closed by Tom Goddard
can't reproduce: Possibly the user sent an abort signal to ChimeraX.
11:07 AM Ticket #14868 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:57 AM Ticket #14873 (Some kind of crash giving a widget focus) created by chimerax-bug-report@…
[…]
10:47 AM Ticket #14867 (PDB-Redo fetch: open_mmcif() got an unexpected keyword argument ...) closed by pett
fixed: Usage no longer reports overSampling or structureFactors as legal …
9:26 AM Ticket #14869 (KeyError: "No known data format 'mtz'") closed by pett
duplicate: Duplicate of #14862
9:20 AM Ticket #14866 (Crash using open dialog) closed by pett
can't reproduce
9:19 AM Ticket #14865 (KeyError: "No known data format 'mtz'") closed by pett
duplicate: Duplicate of #14862
9:06 AM Ticket #14872 (swapaa mousemode assigns -1 serial numbers) created by Tristan Croll
[…]
8:59 AM Ticket #14871 (Crash in event loop) created by chimerax-bug-report@…
[…]
7:25 AM Ticket #14870 (New version check: BlockingIOError: [Errno 35] Resource temporarily ...) created by chimerax-bug-report@…
[…]
6:34 AM Ticket #14869 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
4:53 AM Ticket #14868 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by chimerax-bug-report@…
[…]
12:39 AM Ticket #14850 (perframe / clip front problem) closed by Tom Goddard
not a bug: I guess what you mean is that the clip plane is not positioned where …

Apr 1, 2024:

11:46 PM Ticket #14867 (PDB-Redo fetch: open_mmcif() got an unexpected keyword argument ...) created by goddard@…
[…]
11:33 PM Ticket #14866 (Crash using open dialog) created by chimerax-bug-report@…
[…]
8:21 PM Ticket #14815 (volume splitbyzone problems) closed by Tom Goddard
limitation: I see "volume splitbyzone #1" crashed, probably because it ran out of …
7:15 PM Ticket #14865 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
6:40 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) closed by pett
fixed: Now that Chain/StructureSeq doesn't demote itself to Sequence, there …
6:16 PM Ticket #14864 (RFE: dedicated Z-translation mouse mode) created by Elaine Meng
It is too difficult for some of us to use multiple modifier keys …
5:39 PM Ticket #14796 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) closed by Tom Goddard
duplicate: Duplicate of #14787
5:32 PM Ticket #14787 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) closed by Tom Goddard
nonchimerax: ChimeraX crashed in the Apple AMD graphics driver. Unfortunately the …
5:20 PM Ticket #14770 (Fitmap global search: shift/rotation initializations not always random) closed by Tom Goddard
duplicate: Duplicate of #14863
4:54 PM Ticket #14863 (fitmap search variable fitting results) created by deng.luo@…
Roden Luo reports that fitmap search sometimes produces variable …
4:47 PM Dev2024-4-1 created by Tom Goddard
4:33 PM DeveloperMeetings edited by Tom Goddard
(diff)
3:19 PM Ticket #14862 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
1:50 PM Ticket #14861 (Crash changing display configuration) closed by pett
can't reproduce
1:00 PM Ticket #14763 (glClear: invalid value) closed by Tom Goddard
nonchimerax: I agree with Eric that this looks like a graphics driver problem and …
12:29 PM Ticket #14861 (Crash changing display configuration) created by chimerax-bug-report@…
[…]
12:02 PM Ticket #14743 (Unreliable Z translation in mouse mode) closed by Tom Goddard
not a bug: The ctrl key must be pressed after the trackpad click on the Mac to …
11:14 AM Ticket #14860 (Crash giving window focus from mouse) closed by pett
can't reproduce
11:02 AM Ticket #14858 (Crash getting secondary structure IDs after deleting residues) closed by pett
can't reproduce: Hi Tim, Thanks for reporting this problem. The information you was …
10:48 AM Ticket #14860 (Crash giving window focus from mouse) created by chimerax-bug-report@…
[…]
10:46 AM Ticket #14857 (Crash in python_instances_of_class) closed by pett
duplicate
10:45 AM Ticket #14856 (Crash using open/save dialog) closed by pett
can't reproduce
10:39 AM Ticket #14854 (Crash in garbage collection) closed by pett
duplicate
10:34 AM Ticket #14852 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
duplicate: 1.3
10:32 AM Ticket #14851 (Crash in garbage collection) closed by pett
duplicate
10:16 AM Ticket #14847 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
10:14 AM Ticket #14846 (Crash in event loop) closed by pett
can't reproduce
1:57 AM Ticket #14859 (Crash handling color swatch favorite) created by 979472689@…
[…]
12:47 AM Ticket #14858 (Crash getting secondary structure IDs after deleting residues) created by tmckeith@…
[…]

Mar 31, 2024:

2:35 PM Ticket #14857 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
12:27 PM Ticket #14856 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
7:03 AM Ticket #14855 (Error fetching CCD) created by lee.yang@…
[…] SCR-20240331-kxzi.png
5:05 AM Ticket #14854 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Mar 29, 2024:

6:14 PM Ticket #14853 (No template for residue type) created by chimerax-bug-report@…
[…]
5:56 PM Ticket #14852 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
2:11 PM Ticket #14851 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
8:31 AM Ticket #14850 (perframe / clip front problem) created by jacquero@…
[…]
6:30 AM Ticket #14849 (ViewDockX issue) created by 294598870@…
[…] problem.png
4:48 AM Ticket #14848 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by rf2366@…
[…]
12:49 AM Ticket #14847 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]

Mar 28, 2024:

11:41 PM Ticket #14846 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:02 PM Ticket #10051 (Add PDB-REDO to fetch by id to get x-ray maps) closed by pett
fixed: Fetching the PDB-REDO MTZ maps as well will be tomorrow's daily build. …
5:27 PM Ticket #14845 (bundle metadata incorrect) closed by pett
limitation: Ah. Well, I am loathe to convert bundle_info.xml to pyproject.toml in …
5:08 PM Ticket #14845 (bundle metadata incorrect) created by pett
In mmcif/bundle_info.xml I want to define two fetchers For PDB-REDO, …
4:26 PM Ticket #14844 (Crash in python_instances_of_class) closed by pett
duplicate
4:09 PM Ticket #10175 (Toggling rapid access stops plane viewer redrawing) closed by Zach Pearson
fixed: Closing as we now use Qt 6.6.2 and I no longer observe the behavior.
2:05 PM NIAID2024 edited by Elaine Meng
(diff)
2:00 PM NIAID2024 edited by Elaine Meng
(diff)
12:13 PM NIAID2024 edited by Elaine Meng
(diff)
12:05 PM NIAID2024 edited by Elaine Meng
(diff)
11:20 AM Ticket #14844 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
10:33 AM Ticket #14800 (python_instances_of_class: 'Chain' object has no attribute '_c_pointer_ref') closed by pett
duplicate: This is another variant of the python_instances_of_class problem.
10:20 AM Ticket #14843 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Amit, Thanks for reporting this problem. This is a bug in the Qt …
10:17 AM Ticket #14842 (Crash destroying tool) closed by pett
can't reproduce
10:12 AM Ticket #14840 (Crash in create_profile) closed by pett
can't reproduce: 1.3
10:00 AM Ticket #14839 (Crash in garbage collection) closed by pett
duplicate
8:38 AM Ticket #14843 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by amit.amit@…
[…]
4:30 AM Ticket #14842 (Crash destroying tool) created by chimerax-bug-report@…
[…]
3:30 AM Ticket #14841 (Qt6WebEngineCore) created by dengjc21@…
[…]
2:14 AM Ticket #14840 (Crash in create_profile) created by chimerax-bug-report@…
[…]

Mar 27, 2024:

5:53 PM Ticket #14839 (Crash in garbage collection) created by shakeel.s@…
[…]
2:08 PM Ticket #14833 (Unknown problem) closed by pett
not a bug: Hi Kama, It is a bug that that message is displayed, but it's a …
11:12 AM Ticket #14838 (savepos) closed by pett
not a bug: Hi Kamil, "savepos" is a Chimera command, not a ChimeraX command. …
9:32 AM Ticket #14838 (savepos) created by kamil.sekulski@…
[…]
9:16 AM Ticket #14837 (Unknown crash) closed by pett
can't reproduce
9:07 AM Ticket #14835 (Crash in garbage collection) closed by pett
duplicate
9:05 AM Ticket #14834 (Access violation in python_instances_of_class) closed by pett
duplicate: Adding Tristan to ticket we already have open for this.
9:00 AM Ticket #14832 (Access violation in python_instances_of_class) closed by pett
duplicate
8:58 AM Ticket #14831 (Crash changing display configuration) closed by pett
can't reproduce
8:55 AM Ticket #14830 (Restoring new session in old ChimeraX) closed by pett
limitation: Hi Hanako, Session files are "forwards compatible" -- new versions of …
7:55 AM Ticket #14837 (Unknown crash) created by chimerax-bug-report@…
[…]
6:20 AM Ticket #14836 (Residue addition problem) created by Tristan Croll
[…]
5:07 AM Ticket #14835 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:51 AM Ticket #14834 (Access violation in python_instances_of_class) created by Tristan Croll
[…]
12:47 AM Ticket #14833 (Unknown problem) created by kamadak@…
[…]

Mar 26, 2024:

10:43 PM Ticket #14832 (Access violation in python_instances_of_class) created by chimerax-bug-report@…
[…]
8:42 PM Ticket #14831 (Crash changing display configuration) created by chimerax-bug-report@…
[…]
6:21 PM Ticket #14830 (Restoring new session in old ChimeraX) created by isdhnk@…
[…]
6:07 PM Ticket #14823 (Crash in python_instances_of_class while saving session) closed by pett
duplicate: Using #14783 as principal ticket for this problem.
6:06 PM Ticket #14790 (Crash in python_instances_of_class) closed by pett
duplicate: Using #14783 as principal ticket for this crash. Adding reporter to …
6:02 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) reopened by pett
4:44 PM Ticket #14829 (Problem opening pdb file) closed by pett
not a bug: Hi George, The first five columns of each line in your file are a …
4:37 PM Ticket #14827 (Crash in garbage collection) closed by pett
duplicate
4:28 PM Ticket #14829 (Problem opening pdb file) created by gtzotzos@…
[…] [[Image(...)]]
2:02 PM Ticket #14804 (Bad IDATM type assignment) closed by pett
fixed: Fix: …
12:15 PM Ticket #14828 (ISOLDE: ResidueStepper holding reference to closed structure) created by chimerax-bug-report@…
[…]
11:31 AM Ticket #14827 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:56 AM Ticket #14826 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:31 AM Ticket #14826 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
9:18 AM Ticket #14825 (Crash as display config changed) closed by pett
can't reproduce
9:08 AM Ticket #14821 (Qt setting frame origin y to NaN) closed by pett
can't reproduce
8:22 AM Ticket #14825 (Crash as display config changed) created by chimerax-bug-report@…
[…]
6:22 AM Ticket #14824 (altloc submodel problems) created by Tristan Croll
[…]
5:47 AM Ticket #14749 (Clipper: not compatible with ChimeraX 1.8) closed by Tristan Croll
fixed: OK, fixed for now (uploaded new Clipper/ISOLDE builds, requiring …
1:40 AM Ticket #14810 (Infinite recursion reading REDO mmCIF) closed by Greg Couch
fixed: Fixed. The switch to using the styling heuristic in the readcif …
12:24 AM Ticket #14823 (Crash in python_instances_of_class while saving session) created by chimerax-bug-report@…
[…]

Mar 25, 2024:

7:47 PM Ticket #14822 (glClearColor: out of memory) created by chimerax-bug-report@…
[…]
5:04 PM Ticket #14821 (Qt setting frame origin y to NaN) created by chimerax-bug-report@…
[…]
3:05 PM Ticket #14817 (Keyboard interrupt reading trajectory) closed by pett
not a bug: Hi Fernando, I'm guessing you used control-C because the …
2:57 PM Ticket #14814 (Crash in event loop) closed by pett
can't reproduce
2:44 PM Ticket #14813 (Antechamber failure) closed by pett
can't reproduce: Hi Maya, Thanks for reporting this problem. I could not reproduce …
2:22 PM Ticket #14812 (Crash in event loop) closed by pett
can't reproduce
2:05 PM Ticket #14809 (Charge failure) closed by pett
duplicate
9:40 AM Ticket #14820 (glBindBuffer: invalid operation) created by rhenriques08@…
[…]
9:09 AM Ticket #14819 (ARM ChimeraX has Intel Cython lib) created by Tristan Croll
[…]
7:15 AM Ticket #14818 (ChimeraX 1.8 Ubuntu 22.04 missing dependency) created by Tristan Croll
[…]
6:25 AM NIAID2024 edited by Elaine Meng
(diff)
1:51 AM Ticket #14817 (Keyboard interrupt reading trajectory) created by f.bruno@…
[…]

Mar 24, 2024:

8:02 PM Ticket #14816 (Framebuffer incomplete) created by chimerax-bug-report@…
[…]
6:52 PM Ticket #14815 (volume splitbyzone problems) created by rawalswasti@…
[…]
6:36 PM Ticket #14814 (Crash in event loop) created by rawalswasti@…
[…]
6:17 PM NIAID2024 created by Scooter Morris
6:05 PM Ticket #14813 (Antechamber failure) created by mayacheung@…
[…] compound9_ligand.mol
2:46 PM Ticket #14812 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:01 PM Ticket #14811 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
11:37 AM Ticket #14810 (Infinite recursion reading REDO mmCIF) created by francisco.murphy@…
[…]
5:58 AM Ticket #14809 (Charge failure) created by chimerax-bug-report@…
[…]
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