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#14787 closed defect (nonchimerax)
Graphics crash, macOS 10.15.7, Radeon Pro Vega 48
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
I had lots of maps opened. I was moving changing the map threshold in the Volume viewer.
Process: ChimeraX [68648]
Path: /Applications/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.7.1 (1.7.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [68648]
User ID: 501
Date/Time: 2024-03-20 11:50:43.558 +0000
OS Version: Mac OS X 10.15.7 (19H1824)
Report Version: 12
Anonymous UUID: 00793036-5073-2795-E567-3396AEE1EF13
Sleep/Wake UUID: 5D3A1E26-2621-45FA-82B9-F5892F570764
Time Awake Since Boot: 470000 seconds
Time Since Wake: 10000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000001
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff70ea332a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff70f5fe60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff70dba93e raise + 26
3 org.python.python 0x00000001041fe5d4 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff70f545fd _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 libsystem_c.dylib 0x00007fff70e2a808 abort + 120
7 libGPUSupportMercury.dylib 0x00007fff583910a5 gpusGenerateCrashLog.cold.1 + 95
8 libGPUSupportMercury.dylib 0x00007fff5838818f gpusGenerateCrashLog + 89
9 com.apple.AMDRadeonX5000GLDriver 0x000000012b9c29f2 gpusKillClientExt + 9
10 libGPUSupportMercury.dylib 0x00007fff583896a1 gpusSubmitDataBuffers + 490
11 com.apple.AMDRadeonX5000GLDriver 0x000000012b9fae1f glrATI_Hwl_SubmitPacketsWithToken + 101
12 GLEngine 0x00007fff41c92ac8 gleUnbindBufferObject + 58
13 GLEngine 0x00007fff41ca8451 gleUnbindDeleteHashNameAndObject + 63
14 GLEngine 0x00007fff41bf7ae0 glDeleteBuffers_Exec + 2161
15 libffi.dylib 0x00007fff6eafd905 ffi_call_unix64 + 85
16 libffi.dylib 0x00007fff6eafd244 ffi_call_int + 694
17 _ctypes.cpython-311-darwin.so 0x000000010c004336 _ctypes_callproc + 678
18 _ctypes.cpython-311-darwin.so 0x000000010bffe9eb PyCFuncPtr_call + 267
19 org.python.python 0x000000010402d36b _PyObject_Call + 107
20 org.python.python 0x00000001040b937a slot_tp_call + 394
21 wrapper.cpython-311-darwin.so 0x000000012efb3939 __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 729
22 latebind.cpython-311-darwin.so 0x000000012f115167 __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 199
23 org.python.python 0x000000010402c3b1 _PyObject_MakeTpCall + 129
24 org.python.python 0x000000010415a3e7 _PyEval_EvalFrameDefault + 60455
25 org.python.python 0x00000001041604d0 _PyEval_Vector + 128
26 org.python.python 0x000000010403071f method_vectorcall + 207
27 sip.cpython-311-darwin.so 0x000000010d7d0367 sip_api_call_procedure_method + 199
28 QtWidgets.abi3.so 0x000000011d669ad8 sipQGraphicsView::mouseMoveEvent(QMouseEvent*) + 104
29 QtWidgets 0x000000011dc19fff QWidget::event(QEvent*) + 431
30 QtWidgets 0x000000011dcb4d5b QFrame::event(QEvent*) + 43
31 QtWidgets 0x000000011df9f1ae QGraphicsView::viewportEvent(QEvent*) + 1294
32 QtWidgets.abi3.so 0x000000011d66af5f sipQGraphicsView::viewportEvent(QEvent*) + 191
33 QtCore 0x000000010d221ed5 QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*) + 229
34 QtWidgets 0x000000011dbc7a73 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 227
35 QtWidgets 0x000000011dbc9fc2 QApplication::notify(QObject*, QEvent*) + 6002
36 QtWidgets.abi3.so 0x000000011d6e41e6 sipQApplication::notify(QObject*, QEvent*) + 230
37 QtCore 0x000000010d221c3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
38 QtWidgets 0x000000011dbc8197 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 935
39 QtWidgets 0x000000011dc3080e 0x11dbbb000 + 481294
40 QtWidgets 0x000000011dc2f689 0x11dbbb000 + 476809
41 QtWidgets 0x000000011dbc7a87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
42 QtWidgets 0x000000011dbc8a43 QApplication::notify(QObject*, QEvent*) + 499
43 QtWidgets.abi3.so 0x000000011d6e41e6 sipQApplication::notify(QObject*, QEvent*) + 230
44 QtCore 0x000000010d221c3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
45 QtGui 0x000000011e2576dc QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 2332
46 QtGui 0x000000011e2af29c QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 444
47 libqcocoa.dylib 0x000000012ab9129b 0x12ab77000 + 107163
48 com.apple.CoreFoundation 0x00007fff37274682 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
49 com.apple.CoreFoundation 0x00007fff37274621 __CFRunLoopDoSource0 + 103
50 com.apple.CoreFoundation 0x00007fff3727443b __CFRunLoopDoSources0 + 209
51 com.apple.CoreFoundation 0x00007fff3727316a __CFRunLoopRun + 927
52 com.apple.CoreFoundation 0x00007fff3727276e CFRunLoopRunSpecific + 462
53 com.apple.HIToolbox 0x00007fff35e9eaad RunCurrentEventLoopInMode + 292
54 com.apple.HIToolbox 0x00007fff35e9e6e4 ReceiveNextEventCommon + 359
55 com.apple.HIToolbox 0x00007fff35e9e569 _BlockUntilNextEventMatchingListInModeWithFilter + 64
56 com.apple.AppKit 0x00007fff344e7659 _DPSNextEvent + 883
57 com.apple.AppKit 0x00007fff344e5ea0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
58 com.apple.AppKit 0x00007fff344d7bae -[NSApplication run] + 658
59 libqcocoa.dylib 0x000000012ab900ac 0x12ab77000 + 102572
60 QtCore 0x000000010d22b326 QEventLoop::exec(QFlags) + 486
61 QtCore 0x000000010d222235 QCoreApplication::exec() + 133
62 QtWidgets.abi3.so 0x000000011d7d0d9a meth_QApplication_exec(_object*, _object*) + 90
63 org.python.python 0x00000001040917ea cfunction_call + 90
64 org.python.python 0x000000010402c3b1 _PyObject_MakeTpCall + 129
65 org.python.python 0x000000010415a3e7 _PyEval_EvalFrameDefault + 60455
66 org.python.python 0x000000010414a47a PyEval_EvalCode + 282
67 org.python.python 0x0000000104144ce3 builtin_exec + 483
68 org.python.python 0x0000000104092144 cfunction_vectorcall_FASTCALL_KEYWORDS + 68
69 org.python.python 0x000000010415a2ef _PyEval_EvalFrameDefault + 60207
70 org.python.python 0x00000001041604d0 _PyEval_Vector + 128
71 org.python.python 0x00000001041f76fd pymain_run_module + 253
72 org.python.python 0x00000001041f71c1 Py_RunMain + 2225
73 org.python.python 0x00000001041f817b pymain_main + 43
74 org.python.python 0x00000001041f814a Py_Main + 42
75 edu.ucsf.cgl.ChimeraX 0x0000000103f77d9a main + 122
76 libdyld.dylib 0x00007fff70d5bcc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010590467f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010590467f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010590467f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 4:
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010590467f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 5:
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010590467f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 6:
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010590467f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 7:
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010590467f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 8:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff70ea5b86 kevent64 + 10
1 QtWebEngineCore 0x0000000122f73a2a 0x11f013000 + 66456106
2 QtWebEngineCore 0x0000000122f73927 0x11f013000 + 66455847
3 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
4 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
5 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
6 QtWebEngineCore 0x0000000122efa2ad 0x11f013000 + 65958573
7 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
8 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
9 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 9:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f067bf 0x11f013000 + 66009023
4 QtWebEngineCore 0x0000000122f0726c 0x11f013000 + 66011756
5 QtWebEngineCore 0x0000000122f06ddd 0x11f013000 + 66010589
6 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
7 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 10:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff70ea5b86 kevent64 + 10
1 QtWebEngineCore 0x0000000122f73a2a 0x11f013000 + 66456106
2 QtWebEngineCore 0x0000000122f73927 0x11f013000 + 66455847
3 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
4 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
5 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
6 QtWebEngineCore 0x0000000121e383a2 0x11f013000 + 48386978
7 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
8 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
9 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f41bef 0x11f013000 + 66251759
4 QtWebEngineCore 0x0000000122e771c9 0x11f013000 + 65421769
5 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
6 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
7 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
8 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
9 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
10 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 12:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000122f39d1b 0x11f013000 + 66219291
3 QtWebEngineCore 0x000000012500792d 0x11f013000 + 100616493
4 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
5 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 13:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f41bef 0x11f013000 + 66251759
4 QtWebEngineCore 0x0000000122e771c9 0x11f013000 + 65421769
5 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
6 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
7 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
8 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
9 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
10 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 14:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff70ea5b86 kevent64 + 10
1 QtWebEngineCore 0x0000000122f73a2a 0x11f013000 + 66456106
2 QtWebEngineCore 0x0000000122f73927 0x11f013000 + 66455847
3 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
4 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
5 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
6 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
7 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
8 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f41bef 0x11f013000 + 66251759
4 QtWebEngineCore 0x0000000122e771c9 0x11f013000 + 65421769
5 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
6 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
7 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
8 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
9 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
10 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 16:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f41bef 0x11f013000 + 66251759
4 QtWebEngineCore 0x0000000122e771c9 0x11f013000 + 65421769
5 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
6 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
7 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
8 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
9 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
10 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 17:: NetworkService
0 libsystem_kernel.dylib 0x00007fff70ea5b86 kevent64 + 10
1 QtWebEngineCore 0x0000000122f73a2a 0x11f013000 + 66456106
2 QtWebEngineCore 0x0000000122f73927 0x11f013000 + 66455847
3 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
4 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
5 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
6 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
7 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
8 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f41bef 0x11f013000 + 66251759
4 QtWebEngineCore 0x0000000122e771c9 0x11f013000 + 65421769
5 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
6 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
7 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
8 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
9 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
10 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 19:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f067bf 0x11f013000 + 66009023
4 QtWebEngineCore 0x0000000122f0726c 0x11f013000 + 66011756
5 QtWebEngineCore 0x0000000122f06ecd 0x11f013000 + 66010829
6 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
7 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f41bef 0x11f013000 + 66251759
4 QtWebEngineCore 0x0000000122e771c9 0x11f013000 + 65421769
5 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
6 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
7 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
8 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
9 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
10 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 21:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff37274825 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff372732f2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff3727276e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff34688ea4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 22:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f41bef 0x11f013000 + 66251759
4 QtWebEngineCore 0x0000000122e771c9 0x11f013000 + 65421769
5 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
6 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
7 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
8 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
9 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
10 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 23:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f067bf 0x11f013000 + 66009023
4 QtWebEngineCore 0x0000000122f06f9a 0x11f013000 + 66011034
5 QtWebEngineCore 0x0000000122f06e0d 0x11f013000 + 66010637
6 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
7 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 24:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f41bef 0x11f013000 + 66251759
4 QtWebEngineCore 0x0000000122e771c9 0x11f013000 + 65421769
5 QtWebEngineCore 0x0000000122ef0a5c 0x11f013000 + 65919580
6 QtWebEngineCore 0x0000000122ea8998 0x11f013000 + 65624472
7 QtWebEngineCore 0x0000000122f12eb8 0x11f013000 + 66059960
8 QtWebEngineCore 0x0000000122f1304a 0x11f013000 + 66060362
9 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
10 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 25:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 QtCore 0x000000010d3b68eb 0x10d1b4000 + 2107627
3 QtCore 0x000000010d3b685e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x000000011e624e0d QFileInfoGatherer::run() + 125
5 QtCore 0x000000010d3ac663 0x10d1b4000 + 2066019
6 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 26:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff70e9cdea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70e9d160 mach_msg + 60
2 QtWebEngineCore 0x0000000122f41e26 0x11f013000 + 66252326
3 QtWebEngineCore 0x0000000122f067bf 0x11f013000 + 66009023
4 QtWebEngineCore 0x0000000122f0726c 0x11f013000 + 66011756
5 QtWebEngineCore 0x0000000122f06e6d 0x11f013000 + 66010733
6 QtWebEngineCore 0x0000000122f3a908 0x11f013000 + 66222344
7 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 27:
0 libsystem_pthread.dylib 0x00007fff70f5bb68 start_wqthread + 0
Thread 28:
0 libsystem_kernel.dylib 0x00007fff70e9f872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff70f60425 _pthread_cond_wait + 698
2 org.python.python 0x00000001041e4214 PyThread_acquire_lock_timed + 340
3 org.python.python 0x0000000104267d9e acquire_timed + 318
4 org.python.python 0x0000000104267fdc lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010403db07 method_vectorcall_VARARGS_KEYWORDS + 167
6 org.python.python 0x000000010415a2ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x00000001041604d0 _PyEval_Vector + 128
8 org.python.python 0x0000000104030816 method_vectorcall + 454
9 org.python.python 0x0000000104268b26 thread_run + 230
10 org.python.python 0x00000001041e3ea4 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff70f60109 _pthread_start + 148
12 libsystem_pthread.dylib 0x00007fff70f5bb8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010da24dc0 rcx: 0x00007ffb680679e8 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007ffb68067a10 rsp: 0x00007ffb680679e8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x000000010da24dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000001 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff70ea332a rfl: 0x0000000000000246 cr2: 0x000000010436a720
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x104d12000 - 0x104d19ffb +select.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/select.cpython-311-darwin.so
0x104e26000 - 0x104e29fff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x104e36000 - 0x104f49fff +libarrays.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x104f76000 - 0x104f7dffb +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x104f8a000 - 0x10543dfe3 +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x1055b6000 - 0x1092d4667 +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x109596000 - 0x109bd8fef +libgfortran.5.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x109c13000 - 0x109c60fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x109c6a000 - 0x109c7aff7 +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x10bd8c000 - 0x10bda7ffb +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
0x10bebc000 - 0x10bebfff3 +_contextvars.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_contextvars.cpython-311-darwin.so
0x10becc000 - 0x10bedffff +_multiarray_tests.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_tests.cpython-311-darwin.so
0x10bff8000 - 0x10c00bfff +_ctypes.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_ctypes.cpython-311-darwin.so
0x10c024000 - 0x10c043ff3 +_umath_linalg.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-darwin.so
0x10c15c000 - 0x10c16fff3 +_pocketfft_internal.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/fft/_pocketfft_internal.cpython-311-darwin.so
0x10c17c000 - 0x10c1efff3 +mtrand.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/mtrand.cpython-311-darwin.so
0x10c254000 - 0x10c273ff3 +bit_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/bit_generator.cpython-311-darwin.so
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0x10c2e8000 - 0x10c2efffb +_hashlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_hashlib.cpython-311-darwin.so
0x10c300000 - 0x10c527e87 +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/libcrypto.1.1.dylib
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0x10c5dc000 - 0x10c62fffb +_bounded_integers.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_bounded_integers.cpython-311-darwin.so
0x10c660000 - 0x10c66ffff +_mt19937.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_mt19937.cpython-311-darwin.so
0x10c684000 - 0x10c68fff7 +_philox.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_philox.cpython-311-darwin.so
0x10c6a4000 - 0x10c6b3ff3 +_pcg64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_pcg64.cpython-311-darwin.so
0x10c6c8000 - 0x10c6cfff7 +_sfc64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_sfc64.cpython-311-darwin.so
0x10c6e0000 - 0x10c76fffb +_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_generator.cpython-311-darwin.so
0x10c8dc000 - 0x10c8dfff7 +_opcode.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_opcode.cpython-311-darwin.so
0x10c9ec000 - 0x10ca0fffb +_geometry.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/geometry/_geometry.cpython-311-darwin.so
0x10ce28000 - 0x10cfabffb +QtCore.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtCore.abi3.so
0x10d1b4000 - 0x10d6b7927 +QtCore (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x10d7c8000 - 0x10d7dfff3 +sip.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/sip.cpython-311-darwin.so
0x10d8f8000 - 0x10d907ffb +QtWebEngineWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebEngineWidgets.abi3.so
0x10d91c000 - 0x10d92fffb +QtWebEngineWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineWidgets.framework/Versions/A/QtWebEngineWidgets
0x10d959000 - 0x10d9eb267 dyld (750.7) /usr/lib/dyld
0x11d5ab000 - 0x11d856ff3 +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWidgets.abi3.so
0x11dbbb000 - 0x11e076fff +QtWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets
0x11e1d3000 - 0x11e87afe7 +QtGui (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtGui.framework/Versions/A/QtGui
0x11e9a7000 - 0x11ea32ff3 +QtDBus (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
0x11ea57000 - 0x11ebbefff +QtGui.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtGui.abi3.so
0x11ef97000 - 0x11efe2fff +QtPrintSupport (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtPrintSupport.framework/Versions/A/QtPrintSupport
0x11f013000 - 0x128d7af87 +QtWebEngineCore (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineCore.framework/Versions/A/QtWebEngineCore
0x129a0f000 - 0x129df2ff7 +QtQuick (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQuick.framework/Versions/A/QtQuick
0x129f53000 - 0x129fbafff +QtOpenGL (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtOpenGL.framework/Versions/A/QtOpenGL
0x129feb000 - 0x12a072ffb +QtQmlModels (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQmlModels.framework/Versions/A/QtQmlModels
0x12a0a3000 - 0x12a0d6ff3 +QtWebChannel (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebChannel.framework/Versions/A/QtWebChannel
0x12a0ef000 - 0x12a4d2fff +QtQml (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQml.framework/Versions/A/QtQml
0x12a58f000 - 0x12a6c2ff7 +QtNetwork (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtNetwork.framework/Versions/A/QtNetwork
0x12a713000 - 0x12a78aff3 +QtPositioning (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtPositioning.framework/Versions/A/QtPositioning
0x12a7af000 - 0x12a7c2fff +QtQuickWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQuickWidgets.framework/Versions/A/QtQuickWidgets
0x12a7db000 - 0x12a7e2ff7 +QtWebChannel.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebChannel.abi3.so
0x12a7f3000 - 0x12a862fff +QtNetwork.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtNetwork.abi3.so
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0x7fff70e4e000 - 0x7fff70e9bff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff70e9c000 - 0x7fff70ec8ff7 libsystem_kernel.dylib (6153.141.59) /usr/lib/system/libsystem_kernel.dylib
0x7fff70ec9000 - 0x7fff70f10fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff70f11000 - 0x7fff70f38fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff70f39000 - 0x7fff70f46ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff70f47000 - 0x7fff70f50ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff70f51000 - 0x7fff70f59fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff70f5a000 - 0x7fff70f64fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff70f65000 - 0x7fff70f69ff3 libsystem_sandbox.dylib (1217.141.8) /usr/lib/system/libsystem_sandbox.dylib
0x7fff70f6a000 - 0x7fff70f6cfff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff70f6d000 - 0x7fff70f74ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff70f75000 - 0x7fff70f8bff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff70f8d000 - 0x7fff70f92ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff70f93000 - 0x7fff70fc8ffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 254
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 362313
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=28.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=28.8G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 1280K 10
Activity Tracing 256K 1
CG backing stores 1760K 2
CG image 656K 46
CoreAnimation 4324K 91
CoreGraphics 8K 1
CoreImage 36K 5
CoreUI image data 4188K 37
Foundation 24K 2
Kernel Alloc Once 8K 1
MALLOC 26.2G 5285
MALLOC guard page 48K 10
MALLOC_MEDIUM (reserved) 1.5G 16 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 3
OpenGL GLSL 384K 4
STACK GUARD 112K 28
Stack 165.2M 29
Stack Guard 56.0M 1
VM_ALLOCATE 478.6M 421
VM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated)
__DATA 76.1M 610
__DATA_CONST 148K 7
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 421.5M 260
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 636.6M 583
__UNICODE 564K 1
mapped file 444.3M 80
shared memory 2860K 27
=========== ======= =======
TOTAL 30.5G 7568
TOTAL, minus reserved VM space 28.5G 7568
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/luca/Downloads/cryosparc_P39_J460_mask.mrc
Opened cryosparc_P39_J460_mask.mrc as #1, grid size 256,256,256, pixel 1.06,
shown at level 1, step 1, values float32
> open /Users/luca/Downloads/cryosparc_P39_J451_mask.mrc
Opened cryosparc_P39_J451_mask.mrc as #2, grid size 256,256,256, pixel 1.06,
shown at level 1, step 1, values float32
> volume #1 level 0.4154
> volume #2 level 0.4315
> view #1-2 clip false
> volume #1 level 0.9376
> volume #1 level 1
> volume #1 level 0.998
> volume #2 level 0.9899
> volume #2 level 0.9839
> volume #1 level 0.9899
> open "/Users/luca/Downloads/cryosparc_P39_J424_class_00_00102_volume
> (1).mrc" format mrc
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc as #3, grid size
256,256,256, pixel 1.06, shown at level 0.0765, step 1, values float32
> volume #3 level 0.07727
> volume #3 level 0.04577
> hide #!2 models
> hide #!3 models
> show #!3 models
> hide #!1 models
> close #3
> open "/Users/luca/Downloads/cryosparc_P39_J424_class_00_00102_volume
> (1).mrc"
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc as #3, grid size
256,256,256, pixel 1.06, shown at level 0.0765, step 1, values float32
> volume #3 level 0.04649
> ui tool show "Map Eraser"
> volume copy #3 subregion 177,156,75,231,210,129
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc copy as #5, grid size
55,55,55, pixel 1.06, shown at step 1, values float32
> volume copy #5 subregion 1,0,0,54,53,53
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc copy as #6, grid size
54,54,54, pixel 1.06, shown at step 1, values float32
> volume copy #6 subregion 0,0,0,53,53,53
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc copy as #7, grid size
54,54,54, pixel 1.06, shown at step 1, values float32
> volume copy #7 subregion 0,0,0,53,53,53
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc copy as #8, grid size
54,54,54, pixel 1.06, shown at step 1, values float32
> close #5-8
> show #!3 models
> volume erase #3 center 162.52,169.04,51.645 radius 27.53
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc copy as #5, grid size
256,256,256, pixel 1.06, shown at step 1, values float32
> volume erase #5 center 182.06,160.3,73.736 radius 27.53
> volume erase #5 center 188.15,134.75,74.832 radius 27.53
> volume erase #5 center 154.3,120.5,70.817 radius 27.53
> volume erase #5 center 183.8,124.74,93.305 radius 27.53
> volume erase #5 center 161.58,139.12,80.875 radius 27.53
> volume erase #5 center 157.84,104.6,95.245 radius 27.53
> volume erase #5 center 134.76,121.94,77.878 radius 27.53
> volume erase #5 center 119.47,152.52,77.216 radius 27.53
> volume erase #5 center 110.04,106.48,97.513 radius 27.53
> volume erase #5 center 98.263,157.51,104.36 radius 27.53
> volume erase #5 center 135.48,179.68,109.62 radius 27.53
> volume erase #5 center 117.28,170.26,147.75 radius 24.818
> volume erase #5 center 97.271,143.22,117.64 radius 24.818
> volume erase #5 center 104.47,159.77,131.33 radius 24.818
> volume erase #5 center 137.42,174.49,136.15 radius 11.527
> volume erase #5 center 134.54,164.76,127.22 radius 11.527
> volume erase #5 center 125.74,150.26,97.255 radius 27.53
> volume erase #5 center 150.84,103.62,116.74 radius 15.325
> volume erase #5 center 134.77,98.575,113.44 radius 15.325
> volume erase #5 center 148.59,128.86,99.615 radius 10.171
> volume erase #5 center 135.3,118.79,102.06 radius 10.171
> volume erase #5 center 116.35,104.24,124.92 radius 10.171
> volume erase #5 center 110.51,151.5,163.04 radius 10.171
> volume erase #5 center 139.08,177.8,153.9 radius 10.171
> volume erase #5 center 151.32,140.36,101.1 radius 10.171
> volume erase #5 center 130.87,155.51,119.01 radius 10.171
> volume erase #5 center 156.47,132.15,103.51 radius 10.171
> volume erase #5 center 107.24,126.32,117.11 radius 10.171
> volume erase #5 center 111.78,129.11,108.41 radius 10.171
> volume erase #5 center 103,142.18,142.56 radius 10.171
> volume erase #5 center 119.15,150.52,122.88 radius 10.171
> volume erase #5 center 110.7,148.43,154.93 radius 10.171
> volume erase #5 center 172.05,129.79,110.43 radius 10.171
> volume erase #5 center 181.55,183.07,59.848 radius 10.171
> volume erase #5 center 194.67,143.59,139.15 radius 10.171
> close #5
> show #!3 models
> hide #4 models
> volume gaussian #3 sDev 2
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc gaussian as #5, grid
size 256,256,256, pixel 1.06, shown at step 1, values float32
> volume #5 level 0.03868
> show #4 models
> volume erase #5 center 179.56,145.79,64.092 radius 45.16
> volume erase #5 center 182.95,106.79,81.348 radius 45.16
> volume erase #5 center 119.4,98.302,75.219 radius 45.16
> volume erase #5 center 112.49,136.29,70.656 radius 45.16
> volume erase #5 center 128.48,195.26,94.932 radius 45.16
> volume erase #5 center 84.097,121.07,205.16 radius 45.16
> undo
> close #5
> volume gaussian #3 sDev 2
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc gaussian as #5, grid
size 256,256,256, pixel 1.06, shown at step 1, values float32
> volume #5 level 0.03038
> volume erase #5 center 71.836,141.5,201 radius 45.16
> volume erase #5 center 84.487,138.01,230.11 radius 45.16
> volume erase #5 center 65.396,93.692,211.63 radius 45.16
> volume erase #5 center 94.198,65.181,223.4 radius 45.16
> volume erase #5 center 111.39,53.598,215.74 radius 45.16
> volume erase #5 center 126.59,44.898,204.81 radius 45.16
> volume erase #5 center 152.07,68.605,226.84 radius 45.16
> volume erase #5 center 110.69,98.35,241.91 radius 45.16
> volume erase #5 center 140.38,99.536,150.6 radius 18.986
> volume erase #5 center 168.23,122.81,152.04 radius 20.342
> volume erase #5 center 155.24,91.337,161.06 radius 20.342
> volume gaussian #3 sDev 2
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc gaussian as #6, grid
size 256,256,256, pixel 1.06, shown at step 1, values float32
> hide #!6 models
> close #6
> volume erase #5 center 187.19,91.855,151.39 radius 16.274
> volume erase #5 center 187.58,132.59,172.73 radius 16.274
> volume erase #5 center 124.18,75.987,176.44 radius 16.274
> volume erase #5 center 130.89,80.155,177.9 radius 16.274
> volume erase #5 center 140.85,89.327,180.69 radius 16.274
> volume erase #5 center 153.1,100.34,178.76 radius 16.274
> volume erase #5 center 167.1,117.14,181.61 radius 16.274
> volume erase #5 center 179.14,133.73,171.53 radius 16.274
> volume erase #5 center 178.91,126.99,194.97 radius 16.274
> volume erase #5 center 170.92,114.15,195.94 radius 16.274
> volume erase #5 center 162.66,101.16,196.4 radius 16.274
> volume erase #5 center 156.38,91.525,196.3 radius 16.274
> volume erase #5 center 126.87,83.154,201.7 radius 16.274
> volume erase #5 center 141.63,92.777,205.54 radius 16.274
> volume erase #5 center 149.99,99.668,205.39 radius 16.274
> volume erase #5 center 141.29,110.18,217.25 radius 16.274
> volume erase #5 center 159.39,130.77,209.45 radius 16.274
> volume erase #5 center 175.41,129.63,196.09 radius 16.274
> volume erase #5 center 177.81,138.33,158.81 radius 16.274
> volume erase #5 center 160.61,110.06,163.3 radius 16.274
> volume erase #5 center 140.39,176.72,110.53 radius 20.342
> volume erase #5 center 119.94,154.64,87.732 radius 20.342
> volume erase #5 center 127.63,127.99,65.915 radius 20.342
> volume erase #5 center 164.29,173.1,46.563 radius 34.311
> volume erase #5 center 187.15,163.66,68.424 radius 34.311
> volume erase #5 center 149.28,144.62,27.717 radius 34.311
> volume erase #5 center 156.26,158.56,55.408 radius 34.311
> volume erase #5 center 201.98,132.38,56.399 radius 34.311
> volume erase #5 center 160.39,110.78,46.569 radius 34.311
> volume erase #5 center 202.38,143.53,82.779 radius 19.664
> volume erase #5 center 183.36,157.82,88.926 radius 19.664
> volume erase #5 center 172.48,135.92,61.796 radius 19.664
> volume erase #5 center 96.06,157.36,87.345 radius 19.664
> volume erase #5 center 129.09,171.07,97.48 radius 19.664
> volume erase #5 center 171.06,84.806,71.406 radius 19.664
> volume erase #5 center 133.02,108.53,64.987 radius 10.578
> volume erase #5 center 133.64,90.876,167.46 radius 10.578
> volume erase #5 center 122.75,190.96,121.09 radius 10.578
> volume erase #5 center 115.78,184.82,116.33 radius 10.578
> volume erase #5 center 108.49,165.62,97.955 radius 10.578
> volume erase #5 center 86.107,111.26,177.49 radius 10.578
> volume erase #5 center 82.341,97.273,172.67 radius 10.578
> close #4
> save /Users/luca/Downloads/J424_maskbase.mrc models #5
> volume #5 level 0.01584
> volume #5 level 0.05
> open /Users/luca/Downloads/cryosparc_P39_J468_mask.mrc
Opened cryosparc_P39_J468_mask.mrc as #4, grid size 256,256,256, pixel 1.06,
shown at level 1, step 1, values float32
> volume #4 level 0.9959
> show #!1 models
> hide #!1 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> transparency #4.1 50
> show #!5 models
> volume #4 level 0.9712
> show #!2 models
> hide #!5 models
> show #!1 models
> hide #!1 models
> show #!1 models
> volume #2 level 0.9942
> volume #1 level 0.9961
> volume #4 level 0.9979
> volume #2 level 1
> volume #1 level 1
> volume #4 level 1
> show #!5 models
> hide #!5 models
> hide #!2 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> volume #4 level 1
> open /Users/luca/Downloads/cryosparc_P39_J469_004_volume_map.mrc
Opened cryosparc_P39_J469_004_volume_map.mrc as #6, grid size 416,416,416,
pixel 0.652, shown at level 0.03, step 2, values float32
> hide #!4 models
> volume #6 step 1
> volume gaussian #6 sDev 2
Opened cryosparc_P39_J469_004_volume_map.mrc gaussian as #7, grid size
416,416,416, pixel 0.652, shown at step 1, values float32
> volume #7 level 0.01883
> volume gaussian #6 sDev 1.5
Opened cryosparc_P39_J469_004_volume_map.mrc gaussian as #8, grid size
416,416,416, pixel 0.652, shown at step 1, values float32
> volume #8 level 0.01898
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!8 models
> show #!8 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!8 models
> close #7-8
> close #6
> volume gaussian #3 sDev2
Expected a keyword
> volume gaussian #3 sDev 2
Opened cryosparc_P39_J424_class_00_00102_volume (1).mrc gaussian as #6, grid
size 256,256,256, pixel 1.06, shown at step 1, values float32
> volume #6 level 0.05031
> copy
Unknown command: copy
> ui tool show "Map Eraser"
> volume erase #6 center 133.4,101.51,186.84 radius 23.733
> volume erase #6 center 150.15,124.39,188.5 radius 23.733
> volume erase #6 center 147.59,157.57,180.25 radius 23.733
> volume erase #6 center 165.91,127.94,158.32 radius 20.766
> volume erase #6 center 142.67,103.71,159.6 radius 20.766
> volume erase #6 center 178.64,121.3,182.43 radius 20.766
> volume erase #6 center 171.16,142.07,179.35 radius 20.766
> volume erase #6 center 154.65,93.232,187.93 radius 20.766
> volume erase #6 center 132.76,99.193,210.18 radius 20.766
> volume erase #6 center 68.921,135.96,218.97 radius 20.766
> volume erase #6 center 79.938,137.43,178.87 radius 20.766
> volume erase #6 center 75.359,146.56,194.89 radius 20.766
> volume erase #6 center 66.315,132.37,207.15 radius 20.766
> volume erase #6 center 91.396,103.41,197.81 radius 27.886
> volume erase #6 center 115.38,130.17,196.37 radius 27.886
> volume erase #6 center 117.5,83.696,201.59 radius 27.886
> volume erase #6 center 179.53,154.56,77.942 radius 27.886
> volume erase #6 center 175.93,122.13,89.865 radius 27.886
> volume erase #6 center 159.71,111.55,74.058 radius 27.886
> volume erase #6 center 129.89,127.98,68.508 radius 27.886
> volume erase #6 center 150.88,100.7,102.37 radius 27.886
> volume erase #6 center 108.65,112.58,96.424 radius 27.886
> volume erase #6 center 136.95,172.93,113.89 radius 18.986
> volume erase #6 center 118.45,151.24,91.503 radius 18.986
> volume erase #6 center 152.66,141.04,81.526 radius 18.986
> volume erase #6 center 102.07,158.43,87.733 radius 18.986
> volume erase #6 center 123.52,99.651,112.89 radius 18.986
> volume erase #6 center 131.59,102.75,78.382 radius 18.986
> volume erase #6 center 149.45,115.73,82.413 radius 18.986
> volume erase #6 center 141.24,134.36,90.521 radius 18.986
> volume erase #6 center 102.79,147.27,118.83 radius 18.986
> volume erase #6 center 105.36,162.7,122.61 radius 18.986
> volume erase #6 center 123.08,179.09,137.67 radius 18.986
> volume erase #6 center 115.72,184.36,155.21 radius 18.986
> volume erase #6 center 126.61,168.52,106.83 radius 18.986
> volume erase #6 center 92.483,141.6,98.226 radius 18.986
> volume erase #6 center 119.83,142.46,94.067 radius 18.986
> volume erase #6 center 98.366,173.85,144.98 radius 18.986
> volume erase #6 center 85.694,143.92,133.77 radius 18.986
> volume erase #6 center 97.618,170.03,166.88 radius 18.986
> volume erase #6 center 157.85,126.77,93.184 radius 18.986
> volume erase #6 center 151.33,146.35,90.806 radius 18.986
> volume erase #6 center 122.89,160.83,185.7 radius 18.986
> volume erase #6 center 134.01,177.85,180.8 radius 18.986
> volume erase #6 center 134.47,118.7,91.82 radius 18.986
> volume erase #6 center 104.82,171.58,128.69 radius 18.986
> volume erase #6 center 121.35,176.28,121.22 radius 18.986
> volume erase #6 center 171.97,142.41,171.96 radius 18.986
> volume erase #6 center 155.19,131.99,170.98 radius 10.086
> volume erase #6 center 150.96,118.45,166.66 radius 10.086
> volume erase #6 center 110.53,109.95,185.03 radius 10.086
> volume erase #6 center 111.43,104.35,186.04 radius 10.086
> volume erase #6 center 148.29,111.11,125.87 radius 10.086
> hide #!6 models
> show #!6 models
> save /Users/luca/Downloads/J424_maskbase_small.mrc models #6
> open /Users/luca/Downloads/cryosparc_P39_J471_mask.mrc
Opened cryosparc_P39_J471_mask.mrc as #8, grid size 256,256,256, pixel 1.06,
shown at level 1, step 1, values float32
> volume #8 level 1
> show #!4 models
> open /Users/luca/Downloads/cryosparc_P39_J472_004_volume_map.mrc
Opened cryosparc_P39_J472_004_volume_map.mrc as #9, grid size 416,416,416,
pixel 0.652, shown at level 0.0274, step 2, values float32
> hide #7 models
> hide #!8 models
> hide #!4 models
> volume #9 step 1
> hide #!6 models
> surface dust #9 size 6.52
> show #!6 models
> hide #!9 models
> show #!8 models
> hide #!6 models
> transparency #8.1 50
> show #!9 models
> show #!3 models
> hide #!9 models
> open /Users/luca/Downloads/cryosparc_P39_J490__mask_solvent.mrc
Opened cryosparc_P39_J490__mask_solvent.mrc as #7, grid size 96,96,96, pixel
2.83, shown at level 1, step 1, values float32
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-3.10.23
OpenGL renderer: AMD Radeon Pro Vega 48 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac19,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 3.6 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
Boot ROM Version: 1731.100.125.0.0
SMC Version (system): 2.46f13
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H1824)
Kernel Version: Darwin 19.6.0
Time since boot: 13 days 17:23
Graphics/Displays:
Radeon Pro Vega 48:
Chipset Model: Radeon Pro Vega 48
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x6869
Revision ID: 0x0000
ROM Revision: 113-D0650E-072
VBIOS Version: 113-D05001A1XG-011
Option ROM Version: 113-D05001A1XG-011
EFI Driver Version: 01.01.072
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: 5120 x 2880 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (4)
comment:1 by , 20 months ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 20 months ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 10.15.7, Radeon Pro Vega 48 |
ChimeraX crashed in the Apple AMD graphics driver. Unfortunately the Apple AMD OpenGL drivers are not very stable. There is nothing we can do to fix this, and Apple is unlikely to fix it since all their current machines use Apple Silicon GPUs. The OpenGL drivers on Apple Silicon GPUs have been very stable with almost no crashes reported in a few years of use.
Also note that your macOS 10.15.7 will not be supported by the next ChimeraX 1.8 release in a few months because the Qt window toolkit has dropped support for such old macOS versions. macOS 11 or newer will be required (current version is macOS 14).
comment:3 by , 20 months ago
Also I see in the report ChimeraX was using 30 Gbytes of memory. Apple's AMD graphics drivers are especially prone to crash when a lot of graphics memory is used.
comment:4 by , 20 months ago
Sorry for the delayed reply to this bug report. I was on vacation the last 3 weeks.
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Reported by Luca Pellegrini