![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 19 months ago
Last modified 19 months ago
#14859 feedback defect
Crash handling color swatch favorite
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.6.5-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Thread 0x00000002bb953000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x00000001046f3d40 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif (total: 52)
Process: ChimeraX [36978]
Path: /Applications/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.7.1 (1.7.1.0)
Code Type: ARM-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [36978]
User ID: 501
Date/Time: 2024-04-01 16:56:30.433 +0800
OS Version: macOS 11.6.5 (20G527)
Report Version: 12
Anonymous UUID: 6C883C49-24DD-93BA-4520-625972E99245
Sleep/Wake UUID: 09CFB173-1205-4259-9BAE-FF0B1F7E010C
Time Awake Since Boot: 370000 seconds
Time Since Wake: 4200 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
Assertion failed: (backingScaleFactor > 0.f), function drawnFocusRingBitmapForTime, file /System/Volumes/Data/SWE/macOS/BuildRoots/a0c6c82cc8/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-2022.60.130/AppKit.subproj/NSAutomaticFocusRing.m, line 306.
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x000000019e304e28 __pthread_kill + 8
1 libsystem_pthread.dylib 0x000000019e33743c pthread_kill + 292
2 libsystem_c.dylib 0x000000019e216e10 raise + 32
3 org.python.python 0x00000001049963c4 faulthandler_fatal_error + 392
4 libsystem_platform.dylib 0x000000019e382c44 _sigtramp + 56
5 libsystem_pthread.dylib 0x000000019e33743c pthread_kill + 292
6 libsystem_c.dylib 0x000000019e27f454 abort + 124
7 libsystem_c.dylib 0x000000019e27e8d4 __assert_rtn + 292
8 com.apple.AppKit 0x00000001a0de49c8 +[_NSAutomaticFocusRing showForView:forceRect:isAccessibilityRequest:] + 4140
9 com.apple.AppKit 0x00000001a1627a64 -[NSColorPanelFavoriteSwatch setSelected:] + 144
10 com.apple.UIFoundation 0x00000001a1a1ca80 __93-[_NSCollectionViewCore _dequeueReusableViewOfKind:withIdentifier:forIndexPath:viewCategory:]_block_invoke.902 + 100
11 com.apple.UIFoundation 0x00000001a196b0fc +[_NSUIAnimator performWithoutAnimation:] + 108
12 com.apple.UIFoundation 0x00000001a196a700 -[_NSCollectionViewCore _dequeueReusableViewOfKind:withIdentifier:forIndexPath:viewCategory:] + 1652
13 com.apple.UIFoundation 0x00000001a1969fd4 -[_NSCollectionViewCore dequeueReusableItemWithReuseIdentifier:forIndexPath:] + 92
14 com.apple.AppKit 0x00000001a0e33554 -[NSCollectionView makeItemWithIdentifier:forIndexPath:] + 96
15 com.apple.AppKit 0x00000001a16289c4 -[NSColorPanelFavoritesList collectionView:itemForRepresentedObjectAtIndexPath:] + 56
16 com.apple.AppKit 0x00000001a0e33440 -[_NSCollectionViewDataSourceAdapter collectionView:itemForRepresentedObjectAtIndexPath:] + 456
17 com.apple.UIFoundation 0x00000001a1969c30 -[_NSCollectionViewCore _createPreparedCellForItemAtIndexPath:withLayoutAttributes:applyAttributes:isFocused:notify:] + 120
18 com.apple.UIFoundation 0x00000001a19559a4 -[_NSCollectionViewCore _updateVisibleCellsNow:] + 3912
19 com.apple.UIFoundation 0x00000001a194ccd4 -[_NSCollectionViewCore _layoutItems] + 252
20 com.apple.UIFoundation 0x00000001a1a1b890 -[_NSCollectionViewCore _itemAtIndexPath:includePrefetchedCells:] + 228
21 com.apple.UIFoundation 0x00000001a1a15b08 __74-[_NSCollectionViewCore _selectItemsAtIndexPaths:animated:notifyDelegate:]_block_invoke + 40
22 com.apple.CoreFoundation 0x000000019e467588 __NSSET_IS_CALLING_OUT_TO_A_BLOCK__ + 24
23 com.apple.CoreFoundation 0x000000019e4aab90 -[__NSSingleObjectSetI enumerateObjectsWithOptions:usingBlock:] + 112
24 com.apple.UIFoundation 0x00000001a1a15a7c -[_NSCollectionViewCore _selectItemsAtIndexPaths:animated:notifyDelegate:] + 392
25 com.apple.AppKit 0x00000001a15adacc -[NSCollectionView _selectItemsAtIndexPaths:scrollPosition:notifyDelegate:] + 160
26 com.apple.AppKit 0x00000001a15ae3cc -[NSCollectionView setSelectionIndexPaths:] + 268
27 com.apple.AppKit 0x00000001a16291ac -[NSColorPanelFavoritesList _favoritesDidChange:] + 412
28 com.apple.CoreFoundation 0x000000019e429fb8 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 28
29 com.apple.CoreFoundation 0x000000019e4cbf0c ___CFXRegistrationPost_block_invoke + 52
30 com.apple.CoreFoundation 0x000000019e4cbe78 _CFXRegistrationPost + 456
31 com.apple.CoreFoundation 0x000000019e3f8a88 _CFXNotificationPost + 720
32 com.apple.Foundation 0x000000019f1843d0 -[NSNotificationCenter postNotificationName:object:userInfo:] + 64
33 com.apple.AppKit 0x00000001a16e7a74 -[NSFavoriteColorsStore setColorEntries:] + 192
34 com.apple.AppKit 0x00000001a16e8100 -[NSFavoriteColorsStore updatingFromBacking:] + 44
35 com.apple.AppKit 0x00000001a16e8194 -[NSFavoriteColorsStore updateColorsFromBacking] + 132
36 com.apple.CoreFoundation 0x000000019e429fb8 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 28
37 com.apple.CoreFoundation 0x000000019e4cbf0c ___CFXRegistrationPost_block_invoke + 52
38 com.apple.CoreFoundation 0x000000019e4cbe78 _CFXRegistrationPost + 456
39 com.apple.CoreFoundation 0x000000019e3f8a88 _CFXNotificationPost + 720
40 com.apple.Foundation 0x000000019f1843d0 -[NSNotificationCenter postNotificationName:object:userInfo:] + 64
41 com.apple.AppKit 0x00000001a16e7a74 -[NSFavoriteColorsStore setColorEntries:] + 192
42 com.apple.AppKit 0x00000001a16ea150 -[NSGridFavoriteStoreTransposer writeColorsToBacking:] + 696
43 com.apple.AppKit 0x00000001a16e7a48 -[NSFavoriteColorsStore setColorEntries:] + 148
44 com.apple.AppKit 0x00000001a16e7ddc -[NSFavoriteColorsStore insertColor:atIndex:] + 124
45 com.apple.AppKit 0x00000001a1628df4 -[NSColorPanelFavoritesList collectionView:acceptDrop:indexPath:dropOperation:] + 352
46 com.apple.AppKit 0x00000001a14c9310 -[_NSCollectionViewDropReceiver performDragOperation:] + 688
47 com.apple.AppKit 0x00000001a0f62940 NSCoreDragReceiveMessageProc + 476
48 com.apple.HIServices 0x00000001a366bb50 CallReceiveMessageCollectionWithMessage + 112
49 com.apple.HIServices 0x00000001a3665a08 DoMultipartDropMessage + 104
50 com.apple.HIServices 0x00000001a36657c4 DoDropMessage + 56
51 com.apple.HIServices 0x00000001a3664370 DragInApplication + 940
52 com.apple.HIServices 0x00000001a3662e64 CoreDragStartDragging + 556
53 com.apple.AppKit 0x00000001a0f5fe40 -[NSCoreDragManager _dragUntilMouseUp:accepted:] + 1060
54 com.apple.AppKit 0x00000001a11bce9c _handleBeginDraggingSession + 108
55 com.apple.CoreFoundation 0x000000019e434938 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 36
56 com.apple.CoreFoundation 0x000000019e434784 __CFRunLoopDoObservers + 572
57 com.apple.CoreFoundation 0x000000019e433200 CFRunLoopRunSpecific + 512
58 com.apple.Foundation 0x000000019f1de648 -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 232
59 com.apple.Foundation 0x000000019f26b744 -[NSRunLoop(NSRunLoop) runUntilDate:] + 124
60 com.apple.AppKit 0x00000001a1108d94 +[NSColorPanel _dragColor:withEvent:fromView:source:] + 400
61 com.apple.AppKit 0x00000001a0e375e0 -[NSWindow(NSEventRouting) _handleMouseDownEvent:isDelayedEvent:] + 4384
62 com.apple.AppKit 0x00000001a0da7f90 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 2444
63 com.apple.AppKit 0x00000001a0da7398 -[NSWindow(NSEventRouting) sendEvent:] + 352
64 com.apple.AppKit 0x00000001a0da6270 -[NSApplication(NSEvent) sendEvent:] + 2568
65 libqcocoa.dylib 0x000000014400aca4 0x144000000 + 44196
66 com.apple.AppKit 0x00000001a10733f4 -[NSApplication _handleEvent:] + 76
67 com.apple.AppKit 0x00000001a0c15ac0 -[NSApplication run] + 636
68 libqcocoa.dylib 0x000000014401722c 0x144000000 + 94764
69 QtCore 0x000000013406f39c QEventLoop::exec(QFlags) + 544
70 QtCore 0x00000001340663f4 QCoreApplication::exec() + 128
71 QtWidgets.abi3.so 0x000000013477e2b4 meth_QApplication_exec(_object*, _object*) + 96
72 org.python.python 0x000000010483da64 cfunction_call + 96
73 org.python.python 0x00000001047d9700 _PyObject_MakeTpCall + 128
74 org.python.python 0x00000001048fcc88 _PyEval_EvalFrameDefault + 53048
75 org.python.python 0x00000001048eeac4 PyEval_EvalCode + 276
76 org.python.python 0x00000001048e9320 builtin_exec + 428
77 org.python.python 0x000000010483e450 cfunction_vectorcall_FASTCALL_KEYWORDS + 80
78 org.python.python 0x00000001048fcba0 _PyEval_EvalFrameDefault + 52816
79 org.python.python 0x00000001049026ec _PyEval_Vector + 156
80 org.python.python 0x000000010498f5e0 pymain_run_module + 256
81 org.python.python 0x000000010498f080 Py_RunMain + 1784
82 org.python.python 0x0000000104990230 pymain_main + 52
83 org.python.python 0x00000001049901f0 Py_Main + 36
84 edu.ucsf.cgl.ChimeraX 0x00000001045afd54 main + 128
85 libdyld.dylib 0x000000019e355430 start + 4
Thread 1:
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010653425c blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 2:
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010653425c blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 3:
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010653425c blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 4:
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010653425c blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 5:
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010653425c blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 6:
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010653425c blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 7:
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010653425c blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 8:
0 libsystem_pthread.dylib 0x000000019e3325cc start_wqthread + 0
Thread 9:
0 libsystem_pthread.dylib 0x000000019e3325cc start_wqthread + 0
Thread 10:
0 libsystem_pthread.dylib 0x000000019e3325cc start_wqthread + 0
Thread 11:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x000000019e307ea8 kevent64 + 8
1 QtWebEngineCore 0x00000002836197c8 0x280000000 + 56727496
2 QtWebEngineCore 0x00000002836196f8 0x280000000 + 56727288
3 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
4 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
5 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
6 QtWebEngineCore 0x00000002835aa1a8 0x280000000 + 56271272
7 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
8 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
9 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 12:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835b566c 0x280000000 + 56317548
4 QtWebEngineCore 0x00000002835b60f4 0x280000000 + 56320244
5 QtWebEngineCore 0x00000002835b5d20 0x280000000 + 56319264
6 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
7 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 13:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835b566c 0x280000000 + 56317548
4 QtWebEngineCore 0x00000002835b60f4 0x280000000 + 56320244
5 QtWebEngineCore 0x00000002835b5c9c 0x280000000 + 56319132
6 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
7 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 14:: Chrome_IOThread
0 libsystem_kernel.dylib 0x000000019e307ea8 kevent64 + 8
1 QtWebEngineCore 0x00000002836197c8 0x280000000 + 56727496
2 QtWebEngineCore 0x00000002836196f8 0x280000000 + 56727288
3 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
4 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
5 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
6 QtWebEngineCore 0x00000002826b5c04 0x280000000 + 40590340
7 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
8 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
9 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835ed3b0 0x280000000 + 56546224
4 QtWebEngineCore 0x00000002835375a0 0x280000000 + 55801248
5 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
6 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
7 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
8 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
9 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
10 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 16:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835b566c 0x280000000 + 56317548
4 QtWebEngineCore 0x00000002835b60f4 0x280000000 + 56320244
5 QtWebEngineCore 0x00000002835b5d20 0x280000000 + 56319264
6 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
7 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 17:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 QtWebEngineCore 0x00000002835e6048 0x280000000 + 56516680
3 QtWebEngineCore 0x000000028519afe4 0x280000000 + 85569508
4 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
5 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 18:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835ed3b0 0x280000000 + 56546224
4 QtWebEngineCore 0x00000002835375a0 0x280000000 + 55801248
5 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
6 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
7 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
8 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
9 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
10 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 19:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x000000019e307ea8 kevent64 + 8
1 QtWebEngineCore 0x00000002836197c8 0x280000000 + 56727496
2 QtWebEngineCore 0x00000002836196f8 0x280000000 + 56727288
3 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
4 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
5 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
6 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
7 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
8 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
9 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835ed3b0 0x280000000 + 56546224
4 QtWebEngineCore 0x00000002835375a0 0x280000000 + 55801248
5 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
6 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
7 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
8 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
9 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
10 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 21:: VizCompositorThread
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835ed3b0 0x280000000 + 56546224
4 QtWebEngineCore 0x00000002835375a0 0x280000000 + 55801248
5 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
6 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
7 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
8 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
9 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
10 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 22:: NetworkService
0 libsystem_kernel.dylib 0x000000019e307ea8 kevent64 + 8
1 QtWebEngineCore 0x00000002836197c8 0x280000000 + 56727496
2 QtWebEngineCore 0x00000002836196f8 0x280000000 + 56727288
3 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
4 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
5 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
6 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
7 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
8 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
9 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 23:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835ed3b0 0x280000000 + 56546224
4 QtWebEngineCore 0x00000002835375a0 0x280000000 + 55801248
5 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
6 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
7 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
8 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
9 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
10 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 24:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835b566c 0x280000000 + 56317548
4 QtWebEngineCore 0x00000002835b60f4 0x280000000 + 56320244
5 QtWebEngineCore 0x00000002835b5d78 0x280000000 + 56319352
6 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
7 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 25:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835ed3b0 0x280000000 + 56546224
4 QtWebEngineCore 0x00000002835375a0 0x280000000 + 55801248
5 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
6 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
7 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
8 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
9 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
10 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 26:
0 libsystem_pthread.dylib 0x000000019e3325cc start_wqthread + 0
Thread 27:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835b566c 0x280000000 + 56317548
4 QtWebEngineCore 0x00000002835b60f4 0x280000000 + 56320244
5 QtWebEngineCore 0x00000002835b5c9c 0x280000000 + 56319132
6 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
7 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 28:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 com.apple.CoreFoundation 0x000000019e4359c0 __CFRunLoopServiceMachPort + 372
3 com.apple.CoreFoundation 0x000000019e433e8c __CFRunLoopRun + 1212
4 com.apple.CoreFoundation 0x000000019e433258 CFRunLoopRunSpecific + 600
5 com.apple.AppKit 0x00000001a0da3f80 _NSEventThread + 196
6 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
7 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 29:: MemoryInfra
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835ed3b0 0x280000000 + 56546224
4 QtWebEngineCore 0x00000002835375a0 0x280000000 + 55801248
5 QtWebEngineCore 0x00000002835a0f6c 0x280000000 + 56233836
6 QtWebEngineCore 0x00000002835644bc 0x280000000 + 55985340
7 QtWebEngineCore 0x00000002835c0d88 0x280000000 + 56364424
8 QtWebEngineCore 0x00000002835c0f10 0x280000000 + 56364816
9 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
10 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 30:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x000000019e2fcd94 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019e2fd144 mach_msg + 76
2 QtWebEngineCore 0x00000002835ed5e4 0x280000000 + 56546788
3 QtWebEngineCore 0x00000002835b566c 0x280000000 + 56317548
4 QtWebEngineCore 0x00000002835b5e84 0x280000000 + 56319620
5 QtWebEngineCore 0x00000002835b5cc8 0x280000000 + 56319176
6 QtWebEngineCore 0x00000002835e6be4 0x280000000 + 56519652
7 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 31:
0 libsystem_pthread.dylib 0x000000019e3325cc start_wqthread + 0
Thread 32:
0 libsystem_pthread.dylib 0x000000019e3325cc start_wqthread + 0
Thread 33:
0 libsystem_pthread.dylib 0x000000019e3325cc start_wqthread + 0
Thread 34:
0 libsystem_pthread.dylib 0x000000019e3325cc start_wqthread + 0
Thread 35:
0 libsystem_kernel.dylib 0x000000019e300508 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019e337dac _pthread_cond_wait + 1248
2 org.python.python 0x000000010497be00 PyThread_acquire_lock_timed + 336
3 org.python.python 0x00000001049fea10 acquire_timed + 312
4 org.python.python 0x00000001049fec58 lock_PyThread_acquire_lock + 56
5 org.python.python 0x00000001047ea9f4 method_vectorcall_VARARGS_KEYWORDS + 148
6 org.python.python 0x00000001048fcba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x00000001049026ec _PyEval_Vector + 156
8 org.python.python 0x00000001047ddab8 method_vectorcall + 388
9 org.python.python 0x00000001049ff878 thread_run + 200
10 org.python.python 0x000000010497ba44 pythread_wrapper + 48
11 libsystem_pthread.dylib 0x000000019e337878 _pthread_start + 320
12 libsystem_pthread.dylib 0x000000019e3325e0 thread_start + 8
Thread 0 crashed with ARM Thread State (64-bit):
x0: 0x0000000000000000 x1: 0x0000000000000000 x2: 0x0000000000000001 x3: 0x0000000148047a98
x4: 0x0000000000000063 x5: 0x0000000000000070 x6: 0x4051400000000000 x7: 0x0000000000000000
x8: 0x094c5dd030649c58 x9: 0x094c5dd1340ba118 x10: 0x0000000000001bba x11: 0x0000000214e5fb5e
x12: 0x0000000214e5fb5e x13: 0x0000000000000004 x14: 0x0000000000000881 x15: 0x000000008000001f
x16: 0x0000000000000148 x17: 0x000000020c996e90 x18: 0x000000016eca05ec x19: 0x0000000000000006
x20: 0x00000001046f3d40 x21: 0x0000000000000103 x22: 0x00000001046f3e20 x23: 0x0000000000000001
x24: 0x0000000104b5c630 x25: 0x00000001f66f94d1 x26: 0x0000000000000000 x27: 0x0000000000000000
x28: 0x00006000013df480 fp: 0x0000000148047ae0 lr: 0x000000019e33743c
sp: 0x0000000148047ac0 pc: 0x000000019e304e28 cpsr: 0x40000000
far: 0x000000014cc30000 esr: 0x56000080
Binary Images:
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0x1055b0000 - 0x1055b3fff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x1055c4000 - 0x1055cbfff +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x1055dc000 - 0x1055ebfff +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x105700000 - 0x10576ffff +libarrays.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10579c000 - 0x1057e7fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
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0x1063c8000 - 0x1077bbfff +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x1079a4000 - 0x107cfffff +libgfortran.5.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x107e34000 - 0x107e4bfff +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
0x107f60000 - 0x107f63fff +_contextvars.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_contextvars.cpython-311-darwin.so
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0x125510000 - 0x12558ffff +QtDBus (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
0x1255b4000 - 0x1255c3fff +QtWebEngineWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebEngineWidgets.abi3.so
0x1255dc000 - 0x1255e3fff +QtWebChannel.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebChannel.abi3.so
0x134000000 - 0x13445ffff +QtCore (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x13451c000 - 0x134803fff +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWidgets.abi3.so
0x134b68000 - 0x134fb7fff +QtWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets
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0x1bf82f000 - 0x1c041afff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x1c041b000 - 0x1c0516fff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x1c0517000 - 0x1c052efff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x1c05b3000 - 0x1c07d2fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x1c107b000 - 0x1c107ffff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x1c299f000 - 0x1c29a2fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x1c462f000 - 0x1c466afff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x1c4eb4000 - 0x1c4ecffff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x1cdd4a000 - 0x1cdde8fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x1cdfe6000 - 0x1cdfe9fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x1d050b000 - 0x1d0545fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x1d1b8b000 - 0x1d1b8efff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x1d9b6b000 - 0x1d9b7afff libSimplifiedChineseConverter.dylib (90) /System/Library/CoreServices/Encodings/libSimplifiedChineseConverter.dylib
0x1ddf9f000 - 0x1ddfa3fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x1e01f1000 - 0x1e01f7fff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x1e01f8000 - 0x1e01fdfff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x1e01fe000 - 0x1e020dfff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x1e020e000 - 0x1e0210fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x1e0211000 - 0x1e0219fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x1e021a000 - 0x1e0252fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x1e0253000 - 0x1e028bfff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x1e028c000 - 0x1e03f8fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x1e03f9000 - 0x1e0403fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x1e0404000 - 0x1e056efff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x1e056f000 - 0x1e0593fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x1e0594000 - 0x1e05f3fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x1e1072000 - 0x1e1079fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x1e107a000 - 0x1e1160fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x1e3642000 - 0x1e364dfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x1e9866000 - 0x1e9871fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x1e9a8b000 - 0x1e9aa4fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x1f144a000 - 0x1f1451fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
0x280000000 - 0x2889f3fff +QtWebEngineCore (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineCore.framework/Versions/A/QtWebEngineCore
0x295dd0000 - 0x295ddbfff +nones_formathandler.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/OpenGL_accelerate/nones_formathandler.cpython-311-darwin.so
0x29c4c8000 - 0x29c4cbfff +_graphics.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/_graphics.cpython-311-darwin.so
0x29d34c000 - 0x29d36ffff +_pdbio.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/pdb/_pdbio.cpython-311-darwin.so
0x29d394000 - 0x29d3a7fff +_ribbons.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/_ribbons.cpython-311-darwin.so
0x2a0f24000 - 0x2a0f83fff +mmcif.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mmcif/mmcif.cpython-311-darwin.so
0x2a1200000 - 0x2a1263fff +_mmcif.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mmcif/_mmcif.cpython-311-darwin.so
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=2.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.8G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 3280K 7
CG image 1408K 22
CoreAnimation 4096K 68
CoreGraphics 32K 2
CoreUI image data 5184K 37
Foundation 16K 1
Kernel Alloc Once 32K 1
MALLOC 1.0G 131
MALLOC guard page 192K 10
MALLOC_MEDIUM (reserved) 888.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 64K 2
OpenGL GLSL 384K 4
STACK GUARD 560K 35
Stack 176.8M 36
Stack Guard 56.0M 1
VM_ALLOCATE 227.0M 177
VM_ALLOCATE (reserved) 160.0M 3 reserved VM address space (unallocated)
__AUTH 1026K 265
__AUTH_CONST 15.2M 457
__DATA 19.7M 599
__DATA_CONST 25.5M 599
__DATA_DIRTY 1814K 214
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 520.1M 151
__OBJC_CONST 3302K 255
__OBJC_RO 75.1M 1
__OBJC_RW 2576K 1
__TEXT 569.6M 620
__UNICODE 588K 1
mapped file 267.9M 52
shared memory 3376K 27
=========== ======= =======
TOTAL 4.3G 3792
TOTAL, minus reserved VM space 2.9G 3792
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/hechuchu/Downloads/6gov.pdb format pdb
6gov.pdb title:
Structure of the RNA polymerase λ-based antitermination complex [more info...]
Chain information for 6gov.pdb #1
---
Chain | Description | UniProt
A | transcription termination/antitermination protein nusa | NUSA_ECO57 1-495
B | antitermination factor NUSB | NUSB_ECO57 1-139
E | 30S ribosomal protein S10 | RS10_ECO57 1-103
G | transcription termination/antitermination protein nusg | NUSG_ECO57 1-181
K | DNA (I) |
L | DNA (II) |
N | antitermination protein N | REGN_LAMBD 1-107
R | RNA (transcription bubble) |
U V | DNA-directed RNA polymerase subunit α | RPOA_ECO57 1-329
W | DNA-directed RNA polymerase subunit ω | RPOZ_ECO57 1-91
X | DNA-directed RNA polymerase subunit β | RPOB_ECO57 1-1342
Y | DNA-directed RNA polymerase subunit β' | RPOC_ECO57 1-1407
Non-standard residues in 6gov.pdb #1
---
MG — magnesium ion
ZN — zinc ion
> hide cartoons
> show cartoons
> show atoms
> hide atoms
> select /X:1-1341
10575 atoms, 10744 bonds, 1341 residues, 1 model selected
> ui tool show "Selection Inspector"
> color sel #7f85b2 target r
> color sel #6b98b2 target r
> color sel #72b0b2 target r
> color sel #679eb2 target r
> color sel #8298b2 target r
> color sel #618db2 target r
> color sel #90a3b2 target r
> color sel #628db2 target r
> color sel #6490b6 target r
> color sel #80b7e8 target r
> color sel #88c4f7 target r
> color sel #89c5f9 target r
> color sel #8ac6fb target r
> color sel #8bc8fd target r
> color sel #8ccaff target r
> color sel #8cc9fe target r
> color sel #8bc8fd target r
> color sel #8bc7fc target r
> color sel #82bbed target r
> color sel #7db3e2 target r
> color sel #7bb1df target r
> color sel #78addb target r
> color sel #78acda target r
> color sel #77acd9 target r
> color sel #72a4cf target r
> color sel #71a3ce target r
> color sel #71a2cd target r
> color sel #70a1cc target r
> color sel #6997bf target r
> color sel #6693b9 target r
> color sel #6592b8 target r
> color sel #6692b9 target r
> color sel #6693ba target r
> color sel #6794bc target r
> color sel #6896be target r
> color sel #6997bf target r
> color sel #6a98c0 target r
> color sel #6b9ac3 target r
> color sel #6d9cc6 target r
> color sel #6d9dc6 target r
> color sel #6fa0ca target r
> color sel #70a0cb target r
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 7459.101.3
OS Loader Version: 6723.140.2
Software:
System Software Overview:
System Version: macOS 11.6.5 (20G527)
Kernel Version: Darwin 20.6.0
Time since boot: 36 days 12:22
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (3)
comment:1 by , 19 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash handling color swatch favorite |
comment:2 by , 19 months ago
| Status: | accepted → feedback |
|---|
comment:3 by , 19 months ago
We've seen this crash before but not much in recent years. It might be a macOS bug that is present in the old macOS 11, but not in newer versions of macOS.
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Hi,
--Eric