![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
May 11, 2021:
- 5:36 PM 2021-4-29 edited by
- (diff)
- 5:33 PM Dev2021-5-13 created by
- 5:29 PM Dev2021-4-29 edited by
- (diff)
- 5:28 PM 2021-5-13 edited by
- (diff)
- 5:27 PM 2021-5-13 created by
- 5:25 PM DeveloperMeetings edited by
- (diff)
- 3:48 PM Ticket #4626 (Already-installed bundle raising error) created by
- […]
- 10:25 AM Ticket #4625 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
- 10:18 AM Ticket #4624 (Graphics crash, macOS 10.14.6, Intel Iris Pro 6200) closed by
- nonchimerax: ChimeraX crashed in Apple's Intel graphics driver. Unfortunately …
- 10:10 AM Ticket #4621 (Graphics crash, macOS 10.15.7, Intel Iris Plus 645) closed by
- nonchimerax: Crash in Apple Intel graphics driver. ChimeraX 1.2 using lots of …
- 10:07 AM Ticket #4620 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 3) closed by
- duplicate: Duplicate of #4619. Same user. Previous report with ChimeraX 1.3, …
- 10:00 AM Ticket #4619 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 2) closed by
- nonchimerax: Typical Apple graphics driver crash. Volume threshold was just …
- 9:52 AM Ticket #4625 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 8:50 AM Ticket #4622 (save dialog: 'SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate: Hi Roksana, Thanks for reporting this problem. ChimeraX was trying …
- 6:22 AM Ticket #4624 (Graphics crash, macOS 10.14.6, Intel Iris Pro 6200) created by
- […]
- 2:57 AM Ticket #4623 (ISOLDE: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
May 10, 2021:
- 11:25 PM Ticket #4622 (save dialog: 'SaveModelOptionWidget' object has no attribute '_name') created by
- […]
- 10:33 PM Ticket #4621 (Graphics crash, macOS 10.15.7, Intel Iris Plus 645) created by
- […]
- 7:29 PM Ticket #4583 (wrapped C/C++ object of type QScreen has been deleted) closed by
- fixed: Fixed. Creating context now uses the screen the window is on if the …
- 6:12 PM Ticket #4620 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 3) created by
- […]
- 5:53 PM Ticket #4619 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 2) created by
- […]
- 5:46 PM Ticket #4616 (Crash creating context for status bar) closed by
- can't reproduce: Looks like the same reporter, same machine and same crash as #4136, …
- 3:26 PM Ticket #4590 (AttributeError: '_Term' object has no attribute '_add_implied_hack') closed by
- fixed
- 3:25 PM Ticket #4613 (splitbyzone) closed by
- fixed: Fixed. The split part of the map far from the atoms should not be …
- 3:01 PM Ticket #4618 (Graphics crash, macOS 11.2.3, Radeon Pro 580) closed by
- nonchimerax: This ChimeraX crash was in Apple's graphics driver. In fact it was …
- 1:52 PM Ticket #4591 (Selection Inspector cannot change ss_type) closed by
- fixed: The 'setattr' command needed to use integer values, not strings.
- 11:52 AM Ticket #4614 (Toolshed error in "already installed" error message) closed by
- duplicate
- 11:51 AM Ticket #4612 (splitbyzone) closed by
- duplicate: Essentially duplicate or predecessor of #4613
- 11:42 AM Ticket #4611 (Toolshed error in "already installed" error message) closed by
- duplicate: Hi Bharti, You were trying to install a bundle that was already …
- 11:19 AM Ticket #4599 (Graphics crash, macOS 11.2.3, Intel Iris Plus 645) closed by
- nonchimerax: Mac Intel graphics driver crash.
- 11:17 AM Ticket #4598 (Probable graphics crash) closed by
- can't reproduce: The ChimeraX crash you reported did not give us enough info to debug …
- 11:10 AM Ticket #4588 (balloon help/picking: numpy.linalg.LinAlgError: Singular matrix) closed by
- not a bug: They opened a 3 channel tif map then closed #1.3 leaving two channels. …
- 4:18 AM Ticket #4618 (Graphics crash, macOS 11.2.3, Radeon Pro 580) created by
- […]
- 3:57 AM Ticket #4617 (Specifier for picked atom may need to use serial number in some situations) created by
- […]
May 9, 2021:
- 10:22 PM Ticket #4616 (Crash creating context for status bar) created by
- […]
- 7:53 PM Ticket #4615 (Crash showing rapid access) created by
- […]
May 8, 2021:
- 5:37 PM Ticket #4614 (Toolshed error in "already installed" error message) created by
- […]
- 2:14 PM Ticket #4613 (splitbyzone) created by
- […]
- 1:50 PM Ticket #4612 (splitbyzone) created by
- […]
May 7, 2021:
- 10:25 PM Ticket #4607 (_name_completion() can return None) closed by
-
fixed: Reproducible with command
color ylb. Added test case. - 6:09 PM Ticket #4608 (No error for "ui tool show" of non-existent tool) closed by
- fixed: For some inexplicable reason, failing to find a tool to show was …
- 5:57 PM Ticket #4592 (Impossible to change residue angles with Selection Inspector) closed by
- fixed: Both problems (labeling and typing new values) fixed.
- 4:44 PM Ticket #4611 (Toolshed error in "already installed" error message) created by
- […]
- 4:28 PM Ticket #4609 (Problem fetching Modeller scores) closed by
- duplicate: Hi, Thanks for reporting this problem. It has been fixed and the fix …
- 4:13 PM Ticket #4595 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- fixed: Fix available in next daily build and 1.2.2 release candidate
- 4:13 PM Ticket #4594 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- fixed
- 4:12 PM Ticket #4584 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- fixed: Fix available in next daily build and 1.2.2 release candidate
- 4:03 PM Ticket #4610 ("Show in sequence viewer" error when no hits) created by
- […]
- 3:53 PM Ticket #4609 (Problem fetching Modeller scores) created by
- […]
- 3:16 PM Ticket #4608 (No error for "ui tool show" of non-existent tool) created by
- per summary, e.g. "Match Maker"
- 1:29 PM Ticket #4607 (_name_completion() can return None) created by
- […]
- 10:57 AM Ticket #4605 (Cannot restore session: _pickle.UnpicklingError: invalid load key) closed by
- fixed: You need to use a newer version of ChimeraX to restore that session. …
- 9:03 AM Ticket #4606 (Dual display crash showing tool tip popup) closed by
- duplicate
- 5:43 AM Ticket #4606 (Dual display crash showing tool tip popup) created by
- […]
May 6, 2021:
- 4:07 PM Ticket #4605 (Cannot restore session: _pickle.UnpicklingError: invalid load key) created by
- […]
- 3:58 PM Ticket #4604 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by
- duplicate: Hi Uma, Thanks for reporting this problem. It has been fixed for …
- 2:09 PM NTTData edited by
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- 2:09 PM NTTData edited by
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- 2:00 PM NTTData edited by
- (diff)
- 1:54 PM NTTData edited by
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- 1:51 PM NTTData edited by
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- 1:48 PM NTTData edited by
- (diff)
- 1:31 PM NTTData edited by
- (diff)
- 1:18 PM NTTData edited by
- (diff)
- 12:58 PM Ticket #4604 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by
- […]
- 11:24 AM Ticket #4603 (Using Chimera atom spec syntax) closed by
- not a bug
- 11:16 AM Ticket #4328 (ISOLDE: 'OpenMM_Thread_Handler' object has no attribute '_c_pointer') closed by
- fixed
- 11:16 AM Ticket #3971 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') closed by
- fixed: Finally tracked down and squished. Will be fixed in the next release.
- 11:16 AM Ticket #3717 (ISOLDE: 'OpenMM_Thread_Handler' object has no attribute '_c_pointer') closed by
- fixed: Finally tracked down and squished. Will be fixed in the next release.
- 11:15 AM Ticket #3562 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') closed by
- fixed: Finally tracked down and squished. Will be fixed in the next release.
- 11:15 AM Ticket #3520 (Some kind of graphics crash running ISOLDE) closed by
- fixed: Sorry for the necropost - just cleaning up some ancient history (this …
- 11:13 AM Ticket #3466 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') closed by
- fixed: Finally tracked down and squished. Will be fixed in the next release.
- 11:12 AM Ticket #3065 (ISOLDE simulation stopped: 'OpenMM_Thread_Handler' object has no ...) closed by
- fixed: Finally tracked down and squished. Will be fixed in the next release.
- 11:11 AM Ticket #4593 (ISOLDE: 'OpenMM_Thread_Handler' object has no attribute '_c_pointer') closed by
- fixed: I finally tracked down how this long-standing bug is triggered. It …
- 11:02 AM Ticket #4602 (Blast results problem) closed by
- duplicate: Hi Muniswamy, Thanks for reporting this problem. It is fixed in the …
- 10:48 AM Ticket #4601 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
- 10:47 AM Ticket #4600 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
- 10:33 AM Ticket #4596 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate: Duplicate of #4595
- 9:43 AM Ticket #4603 (Using Chimera atom spec syntax) created by
- […]
- 7:51 AM Ticket #4602 (Blast results problem) created by
- […]
- 4:12 AM Ticket #4601 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 4:11 AM Ticket #4600 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 1:48 AM Ticket #4599 (Graphics crash, macOS 11.2.3, Intel Iris Plus 645) created by
- […]
May 5, 2021:
- 6:08 PM Ticket #4598 (Probable graphics crash) created by
- […]
- 12:55 PM Ticket #4597 (Crash adding second residue inside a break) created by
- […]
- 7:58 AM Ticket #4596 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 7:53 AM Ticket #4595 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 5:51 AM Ticket #4594 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 1:46 AM Ticket #4593 (ISOLDE: 'OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by
- […]
May 4, 2021:
- 12:54 PM Ticket #4592 (Impossible to change residue angles with Selection Inspector) created by
- Besides all the chi angles being labeled chi1, it is impossible to …
- 12:49 PM Ticket #4591 (Selection Inspector cannot change ss_type) created by
- open 1zik select /A272 atoms, 257 bonds, 46 residues, 1 model selected …
- 12:44 PM Ticket #4590 (AttributeError: '_Term' object has no attribute '_add_implied_hack') created by
- […]
- 8:37 AM Ticket #4589 (PDB secondary structure info lost) created by
- Non-alpha helix types and strand ordering and sheet membership from …
- 6:57 AM Ticket #4588 (balloon help/picking: numpy.linalg.LinAlgError: Singular matrix) created by
- […]
- 4:06 AM Ticket #4587 (Python shell: ERROR:tornado.general:Uncaught exception in zmqstream ...) created by
- […]
May 3, 2021:
- 5:26 PM Ticket #4544 (Can't open PDB file with exotic characters for output on Windows) closed by
- fixed: Used various wchar_t routines on Windows.
- 10:53 AM Ticket #4585 (First distance not labeled) closed by
- fixed: Hi Tony, thanks for reporting this problem. I've fixed it in the …
May 2, 2021:
Apr 30, 2021:
- 2:03 PM Ticket #4585 (First distance not labeled) created by
- […]
- 1:39 PM Ticket #4584 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 1:36 PM Ticket #4583 (wrapped C/C++ object of type QScreen has been deleted) created by
- […]
- 1:23 PM Ticket #4582 (Error in toolshed error message) closed by
- duplicate: Hi Greg, This is an error in code that was trying to tell you that a …
- 1:21 PM Ticket #4581 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate: I believe this has already been fixed.
- 11:56 AM Ticket #4578 (second "vr true" failed: ...) closed by
- duplicate: This was fixed 5 weeks ago, so get the ChimeraX 1.2 release candidate …
- 11:31 AM Ticket #4573 (Main graphics restricted to smaller monitor size) closed by
- duplicate: Same bug was reported before #3675 and supposedly it is fixed in the …
- 8:39 AM Ticket #4582 (Error in toolshed error message) created by
- […]
- 6:46 AM Ticket #4581 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 3:41 AM Ticket #4580 (MatchMaker: radio button calls back to dead dialog) created by
- […]
Apr 29, 2021:
- 9:17 AM Ticket #4579 (Crash reading PDB file) closed by
- can't reproduce: Not nearly enough info to reproduce.
- 5:46 AM Ticket #4579 (Crash reading PDB file) created by
- […]
- 1:53 AM Ticket #4578 (second "vr true" failed: ...) created by
- […]
Apr 28, 2021:
- 8:02 PM ChangeLog edited by
- (diff)
- 4:10 PM Ticket #4577 ("color halfbond" doesn't respect target) created by
- color sel target p halfbond f affects both selected bonds and pseudobonds
- 10:53 AM Ticket #4576 (Trashed stack on Big Sur) closed by
- can't reproduce
- 10:51 AM Ticket #4576 (Trashed stack on Big Sur) created by
- […]
- 10:36 AM Ticket #4575 (Cannot save settings: No space left on device) closed by
- nonchimerax
- 9:50 AM Ticket #4572 (ChimeraX window all white) closed by
- nonchimerax: Hi Daniele, Our expert on this is on vacation for a week, but here is …
- 9:28 AM Ticket #4570 (Crash with trashed stack on Big Sur) closed by
- can't reproduce
- 6:25 AM Ticket #4575 (Cannot save settings: No space left on device) created by
- […]
- 5:05 AM Ticket #4574 (Crash on Big Sur due to invalid address) created by
- […]
Apr 27, 2021:
- 6:14 PM Ticket #4573 (Main graphics restricted to smaller monitor size) created by
- […] ChimeraX Screenshot.png
- 12:56 PM Ticket #4572 (ChimeraX window all white) created by
- […] Cattura.PNG
- 10:39 AM Ticket #4569 (RFE: better defaults for "color electrostatic" colormap) closed by
- fixed: Fixed. Made default range -10,10 for color electrostatic. Also made …
- 7:59 AM Ticket #4571 (GUI 'cd') created by
- […]
- 7:48 AM Ticket #4570 (Crash with trashed stack on Big Sur) created by
- […]
Apr 26, 2021:
- 5:00 PM Ticket #4569 (RFE: better defaults for "color electrostatic" colormap) created by
- Currently default is the same as "color sample", to map red-white-blue …
- 2:04 PM ChangeLog edited by
- (diff)
- 2:04 PM ChangeLog edited by
- (diff)
- 2:03 PM Dev2021-4-29 created by
- 2:00 PM 2021-4-29 created by
- 1:55 PM DeveloperMeetings edited by
- (diff)
- 1:29 PM Ticket #4556 (Open and save commands ignore log option: run("open 1a0m", log=False)) closed by
- fixed: Since open and save do parsing in two "passes", they are in charge of …
- 12:04 PM Ticket #4568 (data given to restore_snapshot is None) created by
- […]
- 11:55 AM Ticket #4561 (syntax error submitting Modeller scoring request) closed by
- fixed: Modeller scoring server moved to https
- 11:05 AM Ticket #4567 (Microsoft OneDrive changes Desktop location so ~/Desktop does not ...) created by
- […]
- 10:59 AM Ticket #4566 (Cap colors not matching) created by
- […] clip_cap_bug.jpg
- 9:43 AM Ticket #4565 (subprocess.run being called with a BundleInfo instance argumen) closed by
- duplicate: Hi Miles, Thanks for reporting this problem. It is fixed in the …
- 9:39 AM Ticket #4564 (RMSD command) closed by
- duplicate: Asked and answered on the chimera-users list
- 9:38 AM Ticket #4563 (Error in toolshed error message) closed by
- duplicate
- 9:32 AM Ticket #4565 (subprocess.run being called with a BundleInfo instance argumen) created by
- […]
- 9:27 AM Ticket #4559 (Toolshed using internal UI API) closed by
- duplicate: Hi Volodymyr, This problem occurred as the Updates tool was closing …
- 9:21 AM Ticket #4557 (Permission denied saving settings) closed by
- can't reproduce
- 8:22 AM Ticket #4564 (RMSD command) created by
- […]
- 6:01 AM Ticket #4563 (Error in toolshed error message) created by
- […]
- 2:33 AM Ticket #4562 (Clipper not found) created by
- […]
Apr 25, 2021:
- 10:50 PM Ticket #4561 (syntax error submitting Modeller scoring request) created by
- […]
- 6:28 AM Ticket #4560 (selected_atoms not current) created by
- […]
- 4:56 AM Ticket #4559 (Toolshed using internal UI API) created by
- […]
- 4:34 AM Ticket #4558 (Saved mmCIF files of edited structures sometime problematic) created by
- […] problem_session.cxs
Apr 24, 2021:
Apr 23, 2021:
- 7:01 PM Ticket #4556 (Open and save commands ignore log option: run("open 1a0m", log=False)) created by
- […]
- 4:13 PM Ticket #4554 (Error when no surfaces) closed by
- fixed: Fixed. Added error message when no surfaces specified when coloring …
- 12:55 PM Ticket #4555 (ISOLDE/Clipper: Spgr_descr: No such HM symbol) created by
- […]
- 6:50 AM Ticket #4553 (Windows fatal exception: access violation) closed by
- can't reproduce
- 5:55 AM Ticket #4554 (Error when no surfaces) created by
- […]
Apr 22, 2021:
- 7:21 PM Ticket #4553 (Windows fatal exception: access violation) created by
- […]
- 5:21 PM 2021-4-22 edited by
- (diff)
- 3:20 PM NTTData edited by
- (diff)
- 3:18 PM NeteSOW edited by
- (diff)
- 3:18 PM NeteSOW edited by
- (diff)
- 3:14 PM NTTData edited by
- (diff)
- 3:13 PM NTTData edited by
- (diff)
- 3:08 PM NTTData created by
- 3:04 PM Funding edited by
- (diff)
- 2:56 PM NeteSOW edited by
- (diff)
- 2:44 PM Funding edited by
- (diff)
- 10:40 AM Ticket #4550 (Crash showing rapid access) closed by
- can't reproduce: Well, "Windows fatal exception: access violation" could be almost …
- 10:19 AM Ticket #4546 (Coulombic keyword typo) closed by
- fixed: Changed declaration to dist_dep
- 10:13 AM Ticket #4545 (No addcharge command) closed by
- fixed: There is no addcharge command yet, so commented it out of bundle_info.xml
- 9:47 AM 2021-4-22 edited by
- (diff)
- 9:44 AM 2021-4-22 edited by
- (diff)
- 1:11 AM Ticket #4552 (Help viewer: self.tabs.currentWidget() is None) created by
- […]
- 12:06 AM Ticket #4551 (Weird shadows during 'fly') created by
- […] weird_lighting_during_fly.mp4
Apr 21, 2021:
- 10:13 PM Ticket #4550 (Crash showing rapid access) created by
- […]
- 10:56 AM Ticket #4549 (Updates tool launched before main window ready?) created by
- […]
- 8:02 AM Ticket #4548 (ISOLDE: Unparameterised residue detected) created by
- […]
- 12:36 AM Ticket #4509 (Toolshed reporting obsolete command) closed by
- fixed: Changed message to show which versions of a bundle to install, This …
Apr 20, 2021:
- 10:39 PM Ticket #4547 (Duplicate manager initialization) created by
- […]
- 8:29 PM Ticket #4546 (Coulombic keyword typo) created by
- […]
- 7:59 PM Ticket #4545 (No addcharge command) created by
- […]
- 7:03 PM 2021-4-22 edited by
- (diff)
- 7:02 PM 2021-4-22 edited by
- (diff)
- 7:01 PM 2021-4-22 edited by
- (diff)
- 6:54 PM 2021-4-22 edited by
- (diff)
- 4:44 PM Ticket #4544 (Can't open PDB file with exotic characters for output on Windows) created by
- […]
- 4:37 PM 2021-4-22 edited by
- (diff)
- 4:35 PM Ticket #4436 (VR: socket error: Unable to write) closed by
- fixed: I added the ssh option for joining to the Meeting panel under options …
- 12:18 PM Ticket #1927 (coil not same as protein nonhelix nonstrand?) closed by
- not a bug: the thin segments separate individual strands and helices; if the …
- 11:55 AM Ticket #2290 (Basic Actions: showing ribbons unintuitive) closed by
- not a bug
- 11:25 AM 2021-4-22 created by
- 11:22 AM DeveloperMeetings edited by
- (diff)
- 11:16 AM Ticket #3586 (Automatic log compacting) closed by
- fixed: Some simple-minded compaction will be in tomorrow's daily build (i.e. …
- 9:25 AM Ticket #2115 (Erratic shell tab completion) closed by
- fixed: Seemingly fixed in current daily build
- 9:01 AM Ticket #4543 (GaudiViewX not compatible with latest ChimeraX) closed by
- nonchimerax: Will try to notify GaudiViewX developers about how to update.
- 8:50 AM Ticket #4542 (Permission denied saving command history) closed by
- can't reproduce: Would want to see the error occur again with the post-1.0 changes made …
- 8:44 AM Ticket #4540 (Atom name > 4 characters) closed by
- fixed: This limitation has been lifted in 1.2 and the daily build, though …
- 6:00 AM Ticket #4543 (GaudiViewX not compatible with latest ChimeraX) created by
- […]
- 4:27 AM Ticket #4542 (Permission denied saving command history) created by
- […]
- 12:01 AM Ticket #4541 (Silhouettes look wrong) created by
- […] volumesilh.tif
Apr 19, 2021:
- 10:57 PM Ticket #4540 (Atom name > 4 characters) created by
- […]
- 10:52 PM Ticket #4539 (Permission denied setting timestamp) created by
- […]
- 7:19 PM Ticket #4538 (traceback trying to change tether opacity) closed by
- fixed: Fixed in 1.2 includes 1.3, ie it is fixed in 1.2 onward.
- 7:17 PM Ticket #2893 (conference does not send models to participants) closed by
- duplicate: Duplicate of #2892.
- 7:15 PM Ticket #4538 (traceback trying to change tether opacity) reopened by
- 7:10 PM Ticket #2291 (Tile command: 'Volume' object has no attribute 'atomspec') closed by
- fixed: duplicate of other tickets (e.g. #2202) and has been fixed
- 7:03 PM Ticket #2892 (conference does not send models to participant) closed by
- wontfix: Use the meeting command. Conference didn't work and Conrad retired so …
- 6:53 PM Ticket #2658 (Ribbon 'guides' is None after session restore) closed by
- can't reproduce
- 6:19 PM Ticket #4538 (traceback trying to change tether opacity) closed by
- fixed: Fixed in 1.2. cartoon tether with no structure specifier did not work …
- 5:56 PM Ticket #4537 (VR meeting head hands not syncing) closed by
- fixed: Fixed Code change that delayed initiating vr meeting tracking until …
- 5:40 PM Ticket #963 (lots of DNA/RNA tethers with cartoon suppress false) closed by
- wontfix: wontfix is OK with me assuming tether-opacity bug #4538 is fixed
- 5:37 PM Ticket #4538 (traceback trying to change tether opacity) created by
- […]
- 5:15 PM Ticket #4537 (VR meeting head hands not syncing) created by
- […]
- 5:09 PM Ticket #226 (Identify hinged groups of atoms found by morph calculation) closed by
- fixed: I believe this is implemented as the colorSegments and colorCore …
- 5:06 PM Ticket #4534 (VR: unsupported operand type(s) for *: 'NoneType' and 'Place') closed by
- duplicate: Duplicate of #4438. FIxed.
- 5:02 PM Ticket #4533 (Can't select pseudobonds between models when they have non-identity ...) closed by
- fixed: Fixed. Code simply didn't handle this case correctly. Usually global …
- 4:57 PM Ticket #1027 ("like" operator in atomspec) closed by
- duplicate: duplicate of #480
- 4:51 PM Ticket #1968 (use ajax to update ChimeraX download page) reopened by
- 4:50 PM Ticket #1968 (use ajax to update ChimeraX download page) closed by
- fixed: Partially implemented using symbolic links for daily and candidate …
- 4:49 PM Ticket #2359 (Optimize ribbon drawing) closed by
- fixed: Ribbon code was optimized about a year ago before the 1.0 release. …
- 4:48 PM Ticket #1758 (Ribbon color change slow because it recomputes ribbon) closed by
- fixed: Fixed, probably when I cleaned up and optimized ribbon code before 1.0 …
- 4:46 PM Ticket #2207 (tile command ignores volume models) closed by
- fixed: fixed, at least in my relatively simple test cases
- 4:19 PM Ticket #1753 (cartoon style command interprets spec with atoms but without ...) closed by
- fixed: apparently fixed, including the 2gbp example
- 3:54 PM Ticket #4536 (consistent model color scheme) created by
- Discussion from email thread: Yes, we need to come up with something …
- 3:41 PM Ticket #4535 (Actions / Atoms & Bonds / Hide does not work on selected pseudobonds) created by
- […]
- 3:25 PM Ticket #4534 (VR: unsupported operand type(s) for *: 'NoneType' and 'Place') created by
- […]
- 2:31 PM Ticket #2466 (pseudobonds to ribbons difficult to select and get balloon help for) closed by
- duplicate: Same as #4526
- 2:30 PM Ticket #4526 (cannot select pseudobonds to cartoon) closed by
- fixed: Fixed in 1.2. Pseudobond picking was not using ribbon coordinates …
- 12:40 PM Ticket #1226 (RFE: some way to get back initial default cartoon style) closed by
- fixed: we added a Ribbons/Slabs preset to do this ages ago
- 12:33 PM Ticket #3167 (Add crystalcontacts command) closed by
- fixed: command and GUI added to daily build approximately March 8, 2021 …
- 12:00 PM Ticket #4533 (Can't select pseudobonds between models when they have non-identity ...) created by
- […]
- 11:35 AM Ticket #4531 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() closed by
- can't reproduce: Crash in Qt initializing OpenGL 6 QtGui …
- 11:27 AM Ticket #4530 (access violation trying to create Atoms collection) closed by
- can't reproduce: I am baffled. The crash is during "open 2mfr", autostyling is making …
- 9:53 AM Ticket #4532 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) closed by
- duplicate
- 9:37 AM Ticket #4532 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) created by
- […]
- 9:09 AM Ticket #4529 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
- 9:09 AM Ticket #4528 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate: Hi Stefan, Thanks for reporting this problem. I _believe_ it is …
- 9:05 AM Ticket #4527 (Crash in Qt reacting to window move) closed by
- can't reproduce
- 8:56 AM Ticket #4525 (Toolshed using internal UI API) closed by
- duplicate
- 5:46 AM Ticket #4531 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() created by
- […]
- 1:04 AM Ticket #4530 (access violation trying to create Atoms collection) created by
- […]
Apr 18, 2021:
- 3:26 AM Ticket #4529 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 3:22 AM Ticket #4528 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
Apr 17, 2021:
- 9:46 PM Ticket #4527 (Crash in Qt reacting to window move) created by
- […]
- 8:28 AM Ticket #4526 (cannot select pseudobonds to cartoon) created by
- Usually cannot get a pseudobond between cartoon segments to be …
Apr 16, 2021:
- 1:35 PM Ticket #4525 (Toolshed using internal UI API) created by
- […]
- 11:07 AM Ticket #4523 (Drawing many pseudobonds: glTexImage2D: invalid value) closed by
- duplicate: This ChimeraX error was from showing contacts with distance labels and …
- 11:00 AM Ticket #4522 (Status bar: glClear: invalid framebuffer operation) closed by
- can't reproduce: Looks like OpenGL error occurred on first use (calling glClear()) …
- 10:51 AM Ticket #4521 (Looking Glass: Could not make graphics context current) closed by
- can't reproduce: The LookingGlass rendering works by creating a fullscreen QWindow on …
- 10:02 AM Ticket #4524 (Case sensitive chain IDs not working in wildcards) created by
- […]
- 5:07 AM Ticket #4523 (Drawing many pseudobonds: glTexImage2D: invalid value) created by
- […]
- 2:03 AM Ticket #4522 (Status bar: glClear: invalid framebuffer operation) created by
- […]
Apr 15, 2021:
- 10:56 PM Ticket #4521 (Looking Glass: Could not make graphics context current) created by
- […]
- 10:22 PM Ticket #4520 (Join meeting failed, first message does not have "join" key) closed by
- fixed: Fixed. There was another part of code that create the VR tracker in …
- 7:26 PM Ticket #4520 (Join meeting failed, first message does not have "join" key) created by
- […]
- 6:03 PM Dev2021-4-15 edited by
- (diff)
- 5:12 PM Dev2021-4-15 edited by
- (diff)
- 4:15 PM Ticket #4517 (Bug report not formatted) closed by
- can't reproduce: Could only find one mention of JSON crash logs for macOS "JSON crash …
- 3:46 PM Ticket #4518 ('Model' object has no attribute 'is_clip_cap') closed by
- fixed: Fixed in 1.2. Error was from a volume surface having a non-clip cap …
- 2:23 PM 2021-4-15 edited by
- (diff)
- 12:50 PM 2021-4-15 edited by
- (diff)
- 12:47 PM 2021-4-15 edited by
- (diff)
- 12:15 PM Ticket #4519 (Report hex color components) created by
- […]
- 11:20 AM ChangeLog edited by
- (diff)
- 11:00 AM Ticket #4511 (Ring fill doesn't update on coordinate changes) closed by
- fixed: Confirmed that adding the set_gc_ring()s fixes the problem.
- 8:52 AM Ticket #4514 (Toolshed using internal UI API) closed by
- duplicate
- 8:49 AM Ticket #4512 (Crash with trashed stack) closed by
- can't reproduce
- 6:41 AM Ticket #4518 ('Model' object has no attribute 'is_clip_cap') created by
- […]
- 3:55 AM Ticket #4517 (Bug report not formatted) created by
- […]
- 1:11 AM Ticket #4516 (optionally generate separate X3D objects for each nucleotide) created by
- From chimerax-users: > [T]he 3D models exported by ChimeraX aren’t …
Apr 14, 2021:
- 8:38 PM Ticket #4515 (Creating meeting timed out making tunnel to server) created by
- Ssh command to make tunnel to server when starting meeting timed out …
- 8:31 PM Ticket #4514 (Toolshed using internal UI API) created by
- […]
- 8:09 PM Ticket #4513 (Registration check failure) created by
- […] Screenshot (626).png
- 7:15 PM ChangeLog edited by
- (diff)
- 7:13 PM ChangeLog edited by
- (diff)
- 7:10 PM ChangeLog edited by
- (diff)
- 6:16 PM Ticket #4512 (Crash with trashed stack) created by
- […]
- 6:01 PM ChangeLog edited by
- (diff)
- 5:54 PM Ticket #4511 (Ring fill doesn't update on coordinate changes) created by
- If you open 1mtx as a trajectory (open 1mtx coords t) and fill the …
- 5:39 PM Ticket #4406 (Restoring new session in older ChimeraX: _pickle.UnpicklingError: ...) closed by
- fixed: The bug is probably that the session file was written using the …
- 5:38 PM Ticket #4227 (Better session-restore error message) closed by
- fixed: The bug is probably that the session file was written using the …
- 4:34 PM Ticket #4510 (Surface color tool does not update volume data menu value) closed by
- fixed: Fixed in 1.2.
- 4:19 PM Ticket #4510 (Surface color tool does not update volume data menu value) created by
- […]
- 4:15 PM Ticket #4506 (Surface color session save remembering wrong coloring) closed by
- fixed: Fixed in 1.2 and 1.3. Session save of surface autorecolor handlers …
- 3:48 PM ChangeLog edited by
- (diff)
- 2:52 PM Ticket #4509 (Toolshed reporting obsolete command) created by
- […]
- 12:10 PM Ticket #4508 (Adjust color brightness/contrast) created by
- […]
- 11:27 AM Ticket #4507 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) created by
- […]
- 10:48 AM Ticket #4506 (Surface color session save remembering wrong coloring) created by
- […]
- 10:26 AM Ticket #4431 (More user-friendly session error handling) closed by
- fixed: The bug is probably that the session file was written using the …
Apr 13, 2021:
- 3:46 PM 2021-4-15 edited by
- (diff)
- 3:33 PM Ticket #2452 (protons not properly stripped in 3qm8 heme) closed by
- fixed: It was indeed the alt locs -- the non-altloc metal and parent atom …
- 1:21 PM Ticket #4492 (wrapped C/C++ object of type ChainMenuButton has been deleted) closed by
- can't reproduce: It looks like somehow the MatchMaker UI stayed up after the Qt side …
- 12:00 PM Ticket #4505 (Read PSF+DCD combo directly) created by
- Given the difficulty of creating a PDB for a large system in some …
- 10:46 AM Ticket #4504 (case-sensitive residue names) created by
- […]
- 10:31 AM Dev2021-4-15 created by
- 10:29 AM 2021-4-8 edited by
- (diff)
- 10:29 AM 2021-4-15 created by
- 10:26 AM DeveloperMeetings edited by
- (diff)
- 9:15 AM Ticket #4503 (Crash while garbage collecting during object allocation) closed by
- can't reproduce: Clearly happening during a session restore in this particular case …
Apr 12, 2021:
- 10:57 PM Ticket #4503 (Crash while garbage collecting during object allocation) created by
- […]
- 7:19 PM Ticket #4502 (Clip cap coloring script does not color cap unless "wait 1" command used) created by
- […]
- 6:30 PM Ticket #4453 (Overlapping labels) closed by
- fixed: Hi Jack, The fix will be in tomorrow's daily build. If you restore …
- 6:28 PM Ticket #4485 (a reply to UCSF Computer Graphics Lab) closed by
- duplicate: basically duplicate of #4453
- 5:59 PM Ticket #4500 (glUniformMatrix4fv: invalid operation) closed by
- can't reproduce: Not enough info to debug. Invalid Operation opengl error in …
- 4:16 PM Ticket #4501 (Easier import for MD) created by
- If when you tried to load a trajectory file (dcd etc) it asked you …
- 3:37 PM Ticket #4487 (ChimeraX writes multimodel PDB with multiple END records) closed by
- fixed
- 2:31 PM Ticket #4497 (Crash with trashed stack) closed by
- can't reproduce
- 2:30 PM Ticket #4500 (glUniformMatrix4fv: invalid operation) created by
- […]
- 2:19 PM Ticket #4499 (RFE: coulombic coloring of surface caps to automatically update) created by
- This might require having a map "under the hood," however, even if …
- 2:14 PM Ticket #4498 (RFE: make Shift modifier switch "clip rotate" mousemode to "clip translate") created by
- Make Shift modifier switch the "clip rotate" mousemode to translating …
- 1:54 PM Ticket #4488 (coordination pbonds thinner on last frame of trajectory) closed by
- fixed: Setting metal-coordination groups to their default radius/color was …
- 1:08 PM Ticket #4497 (Crash with trashed stack) created by
- […]
- 12:52 PM Ticket #4493 (Graphics crash, macOS 10.15.7, Intel Iris Pro) closed by
- nonchimerax: Apple Intel graphics driver crash, 2.3 GB memory in use.
- 12:48 PM Ticket #4490 (Graphics crash, macOS 11.2.3, Intel Iris Plus 645) closed by
- nonchimerax: ChimeraX crashed in the macOS Intel graphics driver. This is a known …
- 10:28 AM Ticket #4496 (Error in toolshed error message) closed by
- duplicate
- 10:27 AM Ticket #4495 (Toolshed using internal UI API) closed by
- duplicate
- 10:25 AM Ticket #4494 (Cannot save settings because it is being used by another process) closed by
- duplicate: *possibly* fixed on 9/17/20
- 10:13 AM Ticket #4491 (Crash during garbage collection) closed by
- can't reproduce
- 9:25 AM Ticket #4496 (Error in toolshed error message) created by
- […]
- 8:08 AM Ticket #4495 (Toolshed using internal UI API) created by
- […]
- 5:01 AM Ticket #4494 (Cannot save settings because it is being used by another process) created by
- […]
- 1:39 AM Ticket #4493 (Graphics crash, macOS 10.15.7, Intel Iris Pro) created by
- […]
Apr 11, 2021:
- 7:36 PM Ticket #4492 (wrapped C/C++ object of type ChainMenuButton has been deleted) created by
- […]
- 4:50 AM Ticket #4491 (Crash during garbage collection) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
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