Blast results problem

[swamy02_vet@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.1 (2020-09-09)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/KM/modeller_dimer/HKCT3D/chimeraX_dimer/HKCT3_mon.fasta

Summary of feedback from opening
C:/KM/modeller_dimer/HKCT3D/chimeraX_dimer/HKCT3_mon.fasta  
---  
note | Alignment identifier is HKCT3_mon.fasta  
  
Opened 1 sequences from HKCT3_mon.fasta  

> color bynucleotide

> ui tool show "Show Sequence Viewer"

> ui tool show "Blast Protein"

> ui tool show "Blast Protein"

> blastprotein HKCT3_mon.fasta:1

Web Service: BlastProtein2 is a Python wrapper that calls blastp to search nr
or pdb for sequences similar to the given protein sequence  
Opal service URL:
http://webservices.rbvi.ucsf.edu/opal2/services/BlastProtein2Service  
Opal job id: appBlastProtein2Service1620312148355-303663164  
Opal status URL prefix:
http://webservices.rbvi.ucsf.edu/appBlastProtein2Service1620312148355-303663164  
stdout.txt = standard output  
stderr.txt = standard error  
BlastProtein finished.  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/H  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/C  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/E  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/Y  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/L  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/J  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/F  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/B  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/G  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/I  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/R  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/A  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/X  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/Z  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/N  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/K  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/M  
Failed HTTP Error 404:  
  

Fetching BLAST PDB info using URL:  
https://data.rcsb.org/rest/v1/core/entry/D  
Failed HTTP Error 404:  
  

Could not fetch entry information for H  

Could not fetch entry information for C  

Could not fetch entry information for E  

Could not fetch entry information for Y  

Could not fetch entry information for L  

Could not fetch entry information for J  

Could not fetch entry information for F  

Could not fetch entry information for B  

Could not fetch entry information for G  

Could not fetch entry information for I  

Could not fetch entry information for R  

Could not fetch entry information for A  

Could not fetch entry information for X  

Could not fetch entry information for Z  

Could not fetch entry information for N  

Could not fetch entry information for K  

Could not fetch entry information for M  

Could not fetch entry information for D  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 629, in customEvent  
func(*args, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\blastprotein\tool.py", line 109, in handle_scheme  
self.initialize()  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\blastprotein\tool.py", line 166, in initialize  
self._show_results(self._ref_atomspec, self._blast_results)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\blastprotein\tool.py", line 326, in _show_results  
self._add_pdbinfo(pdb_chains)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\blastprotein\tool.py", line 345, in _add_pdbinfo  
data = info.fetch_info(self.session, chain_ids)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\blastprotein\pdbinfo.py", line 206, in fetch_info  
entry, auth_cid = pcid.split('_')  
ValueError: not enough values to unpack (expected 2, got 1)  
  
ValueError: not enough values to unpack (expected 2, got 1)  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\blastprotein\pdbinfo.py", line 206, in fetch_info  
entry, auth_cid = pcid.split('_')  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 23.20.16.4973
OpenGL renderer: Intel(R) HD Graphics 620
OpenGL vendor: Intel
Manufacturer: Dell Inc.
Model: Inspiron 15-3567
OS: Microsoft Windows 10 Home (Build 19042)
Memory: 8,453,226,496
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i5-7200U CPU @ 2.50GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
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[pett]

Hi Muniswamy,

Thanks for reporting this problem. It is fixed in the latest daily build (or 1.2 release candidate) so if you use one of those you will be able to carry out your BLAST successfully.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab