Opened 5 years ago

Closed 5 years ago

Last modified 5 years ago

#4512 closed defect (can't reproduce)

Crash with trashed stack

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-20.3.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process:               ChimeraX [61502]
Path:                  /private/var/folders/*/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier:            edu.ucsf.cgl.ChimeraX
Version:               1.1.1 (1.1.1.0)
Code Type:             X86-64 (Native)
Parent Process:        ??? [1]
Responsible:           ChimeraX [61502]
User ID:               501

Date/Time:             2021-04-15 11:04:42.566 +1000
OS Version:            macOS 11.2.3 (20D91)
Report Version:        12
Bridge OS Version:     5.2 (18P4347)
Anonymous UUID:        DD546649-5B1E-4D96-6107-7993DCE0F1B2

Sleep/Wake UUID:       0B82985D-4ADE-4406-A9AA-C097C880C802

Time Awake Since Boot: 41000 seconds
Time Since Wake:       2800 seconds

System Integrity Protection: enabled

Crashed Thread:        0  CrBrowserMain

Exception Type:        EXC_BAD_ACCESS (SIGBUS)
Exception Codes:       KERN_MEMORY_ERROR at 0x0000000128993080
Exception Note:        EXC_CORPSE_NOTIFY

VM Regions Near 0x128993080:
    VM_ALLOCATE                 128954000-12895c000    [   32K] r--/r-- SM=ALI  
--> mapped file                 12895c000-128ac4000    [ 1440K] r-x/rwx SM=COW  Object_id=eccc9a6d
    mapped file                 128ac4000-128adc000    [   96K] rw-/rwx SM=COW  Object_id=ed23576d

Thread 0 Crashed:: CrBrowserMain
0   ???                           	0x00007fff205b8462 0 + 140733736256610
1   ???                           	0x00007fff204c8ba3 0 + 140733735275427
2   ???                           	0x00007fff2062ad7d 0 + 140733736725885
3   ChimeraX                      	000000000000000000 0 + 0
4   ???                           	0x00007fff206ddc3d 0 + 140733737458749
5   ???                           	0x00007fff206dd436 0 + 140733737456694
6   ???                           	0x00007fff206dc6ce 0 + 140733737453262
7   ???                           	0x00007fff28964630 0 + 140733874325040
8   ???                           	0x00007fff2896442c 0 + 140733874324524
9   ???                           	0x00007fff2896414f 0 + 140733874323791
10  ???                           	0x00007fff22efc9b1 0 + 140733779528113
11  ???                           	0x00007fff22efb177 0 + 140733779521911
12  ???                           	0x00007fff231d3999 0 + 140733782505881
13  ???                           	0x00007fff231d2758 0 + 140733782501208
14  ???                           	0x00007fff231d2705 0 + 140733782501125
15  ???                           	0x00007fff231d1f53 0 + 140733782499155
16  ???                           	0x00007fff231d1e38 0 + 140733782498872
17  ???                           	0x00007fff2391bf9d 0 + 140733790142365
18  ???                           	0x00000001289c8b0d 0 + 4976315149
19  ???                           	0x00000001289cc443 0 + 4976329795
20  ???                           	0x000000011dfff7c9 0 + 4798281673
21  ???                           	0x000000011e010037 0 + 4798349367
22  ???                           	0x000000011e00fce5 0 + 4798348517
23  ???                           	0x000000011da8e3da 0 + 4792574938
24  ???                           	0x0000000108d614ec 0 + 4443215084
25  ???                           	0x0000000108d608b9 0 + 4443211961
26  ???                           	0x0000000108e35b60 0 + 4444085088
27  ???                           	0x0000000108e2c5c4 0 + 4444046788
28  ???                           	0x0000000108e36a2c 0 + 4444088876
29  ???                           	0x0000000108d60879 0 + 4443211897
30  ???                           	0x0000000108e35bd4 0 + 4444085204
31  ???                           	0x0000000108e328ae 0 + 4444072110
32  ???                           	0x0000000108e36a2c 0 + 4444088876
33  ???                           	0x0000000108d60879 0 + 4443211897
34  ???                           	0x0000000108e35bd4 0 + 4444085204
35  ???                           	0x0000000108e328ae 0 + 4444072110
36  ???                           	0x0000000108e36a2c 0 + 4444088876
37  ???                           	0x0000000108d60377 0 + 4443210615
38  ???                           	0x0000000120c76f17 0 + 4844908311
39  ???                           	0x0000000120c76e26 0 + 4844908070
40  ???                           	0x0000000120c77925 0 + 4844910885
41  ???                           	0x0000000120c7789a 0 + 4844910746
42  ???                           	0x000000011eb1f13d 0 + 4809945405
43  ???                           	0x000000011ddf9075 0 + 4796158069
44  ???                           	0x000000011eb17d41 0 + 4809915713
45  ???                           	0x000000011d9c3810 0 + 4791744528
46  ???                           	0x000000011de0267d 0 + 4796196477
47  ???                           	0x000000011de03a82 0 + 4796201602
48  ???                           	0x000000011d9c23ca 0 + 4791739338
49  ???                           	0x000000011eaee324 0 + 4809745188
50  ???                           	0x000000011eaef55e 0 + 4809749854
51  ???                           	0x00000001289928f9 0 + 4976093433
52  ???                           	0x0000000128993068 0 + 4976095336
53  ???                           	0x00007fff206dea0c 0 + 140733737462284
54  ???                           	0x00007fff206de974 0 + 140733737462132
55  ???                           	0x00007fff206de6ef 0 + 140733737461487
56  ???                           	0x00007fff206dd121 0 + 140733737455905
57  ???                           	0x00007fff206dc6ce 0 + 140733737453262
58  ???                           	0x00007fff28964630 0 + 140733874325040
59  ???                           	0x00007fff28964282 0 + 140733874324098
60  ???                           	0x00007fff2896414f 0 + 140733874323791
61  ???                           	0x00007fff22efc9b1 0 + 140733779528113
62  ???                           	0x00007fff22efb177 0 + 140733779521911
63  ???                           	0x00007fff22eed68a 0 + 140733779465866
64  ???                           	0x0000000128991de3 0 + 4976090595
65  ???                           	0x000000011eae993f 0 + 4809726271
66  ???                           	0x000000011eaee932 0 + 4809746738
67  ???                           	0x000000011dab17d2 0 + 4792719314
68  ???                           	0x0000000108d61382 0 + 4443214722
69  ???                           	0x0000000108d608b9 0 + 4443211961
70  ???                           	0x0000000108e35b60 0 + 4444085088
71  ???                           	0x0000000108e32817 0 + 4444071959
72  ???                           	0x0000000108d60d61 0 + 4443213153
73  ???                           	0x0000000108e35bd4 0 + 4444085204
74  ???                           	0x0000000108e32817 0 + 4444071959
75  ???                           	0x0000000108e36a2c 0 + 4444088876
76  ???                           	0x0000000108d60879 0 + 4443211897
77  ???                           	0x0000000108e35bd4 0 + 4444085204
78  ???                           	0x0000000108e328ae 0 + 4444072110
79  ???                           	0x0000000108e36a2c 0 + 4444088876
80  ???                           	0x0000000108e2bfb0 0 + 4444045232
81  ???                           	0x0000000108e29547 0 + 4444034375
82  ???                           	0x0000000108d6152d 0 + 4443215149
83  ???                           	0x0000000108d608b9 0 + 4443211961
84  ???                           	0x0000000108e35b60 0 + 4444085088
85  ???                           	0x0000000108e328ae 0 + 4444072110
86  ???                           	0x0000000108e36a2c 0 + 4444088876
87  ???                           	0x0000000108d60879 0 + 4443211897
88  ???                           	0x0000000108e35bd4 0 + 4444085204
89  ???                           	0x0000000108e328ae 0 + 4444072110
90  ???                           	0x0000000108e36a2c 0 + 4444088876
91  ???                           	0x0000000108d60377 0 + 4443210615
92  ???                           	0x0000000108e90af3 0 + 4444457715
93  ???                           	0x0000000108e8fbdc 0 + 4444453852
94  ???                           	0x0000000108e8e4c3 0 + 4444447939
95  ???                           	0x0000000108d30dc8 0 + 4443016648
96  ???                           	0x00007fff20601621 0 + 140733736556065

Thread 1:: com.apple.NSEventThread
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x00007fff206debf7 0 + 140733737462775
3   ???                           	0x00007fff206dd2ca 0 + 140733737456330
4   ???                           	0x00007fff206dc6ce 0 + 140733737453262
5   ???                           	0x00007fff230827c6 0 + 140733781125062
6   ???                           	0x00007fff205e6950 0 + 140733736446288
7   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 2:: NetworkConfigWatcher
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x000000012350422f 0 + 4887429679
4   ???                           	0x00000001234b805d 0 + 4887117917
5   ???                           	0x00000001234e1085 0 + 4887285893
6   ???                           	0x00000001235339bc 0 + 4887624124
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 3:: DnsConfigService
0   ???                           	0x00007fff205b67e2 0 + 140733736249314
1   ???                           	0x00000001237c2cbd 0 + 4890307773
2   ???                           	0x0000000123579cdc 0 + 4887911644
3   ???                           	0x00000001234e1085 0 + 4887285893
4   ???                           	0x00000001235339bc 0 + 4887624124
5   ???                           	0x0000000123573717 0 + 4887885591
6   ???                           	0x00007fff205e6950 0 + 140733736446288
7   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 4:: TaskSchedulerServiceThread
0   ???                           	0x00007fff205b67e2 0 + 140733736249314
1   ???                           	0x00000001237c2cbd 0 + 4890307773
2   ???                           	0x0000000123579cc4 0 + 4887911620
3   ???                           	0x00000001234e1085 0 + 4887285893
4   ???                           	0x0000000123522a74 0 + 4887554676
5   ???                           	0x00000001235339bc 0 + 4887624124
6   ???                           	0x0000000123573717 0 + 4887885591
7   ???                           	0x00007fff205e6950 0 + 140733736446288
8   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 5:: TaskSchedulerForegroundWorker
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x0000000123504421 0 + 4887430177
4   ???                           	0x000000012351bd28 0 + 4887526696
5   ???                           	0x000000012351c65b 0 + 4887529051
6   ???                           	0x000000012351c2c4 0 + 4887528132
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 6:: TaskSchedulerForegroundBlockingWorker
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x0000000123504421 0 + 4887430177
4   ???                           	0x000000012351bd28 0 + 4887526696
5   ???                           	0x000000012351c65b 0 + 4887529051
6   ???                           	0x000000012351c2c4 0 + 4887528132
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 7:: TaskSchedulerBackgroundWorker
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x0000000123504421 0 + 4887430177
4   ???                           	0x000000012351bd28 0 + 4887526696
5   ???                           	0x000000012351c65b 0 + 4887529051
6   ???                           	0x000000012351c234 0 + 4887527988
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 8:: TaskSchedulerBackgroundBlockingWorker
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x0000000123504421 0 + 4887430177
4   ???                           	0x000000012351bd28 0 + 4887526696
5   ???                           	0x000000012351c65b 0 + 4887529051
6   ???                           	0x000000012351c234 0 + 4887527988
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 9:: Chrome_IOThread
0   ???                           	0x00007fff205b67e2 0 + 140733736249314
1   ???                           	0x00000001237c2cbd 0 + 4890307773
2   ???                           	0x0000000123579cc4 0 + 4887911620
3   ???                           	0x00000001234e1085 0 + 4887285893
4   ???                           	0x0000000122e4ffe4 0 + 4880400356
5   ???                           	0x00000001235339bc 0 + 4887624124
6   ???                           	0x0000000123573717 0 + 4887885591
7   ???                           	0x00007fff205e6950 0 + 140733736446288
8   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 10:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x000000012350422f 0 + 4887429679
4   ???                           	0x000000012351bd1a 0 + 4887526682
5   ???                           	0x000000012351c3bf 0 + 4887528383
6   ???                           	0x000000012351c264 0 + 4887528036
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 11:: CompositorTileWorker1/70403
0   ???                           	0x00007fff205b48e2 0 + 140733736241378
1   ???                           	0x0000000123571fa8 0 + 4887879592
2   ???                           	0x00000001244f84c8 0 + 4904158408
3   ???                           	0x0000000123532694 0 + 4887619220
4   ???                           	0x0000000123573717 0 + 4887885591
5   ???                           	0x00007fff205e6950 0 + 140733736446288
6   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 12:: AudioThread
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x000000012350422f 0 + 4887429679
4   ???                           	0x00000001234b805d 0 + 4887117917
5   ???                           	0x00000001234e1085 0 + 4887285893
6   ???                           	0x00000001235339bc 0 + 4887624124
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 13:: Chrome_InProcGpuThread
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x00000001234b8052 0 + 4887117906
4   ???                           	0x00000001234e1085 0 + 4887285893
5   ???                           	0x00000001235339bc 0 + 4887624124
6   ???                           	0x0000000123573717 0 + 4887885591
7   ???                           	0x00007fff205e6950 0 + 140733736446288
8   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 14:: Chrome_ChildIOThread
0   ???                           	0x00007fff205b67e2 0 + 140733736249314
1   ???                           	0x00000001237c2cbd 0 + 4890307773
2   ???                           	0x0000000123579cdc 0 + 4887911644
3   ???                           	0x00000001234e1085 0 + 4887285893
4   ???                           	0x00000001235339bc 0 + 4887624124
5   ???                           	0x0000000123573717 0 + 4887885591
6   ???                           	0x00007fff205e6950 0 + 140733736446288
7   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 15:: NetworkConfigWatcher
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x000000012350422f 0 + 4887429679
4   ???                           	0x00000001234b805d 0 + 4887117917
5   ???                           	0x00000001234e1085 0 + 4887285893
6   ???                           	0x00000001235339bc 0 + 4887624124
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 16:: TaskSchedulerSingleThreadForegroundBlocking1
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x000000012350422f 0 + 4887429679
4   ???                           	0x000000012351bd1a 0 + 4887526682
5   ???                           	0x000000012351c65b 0 + 4887529051
6   ???                           	0x000000012351c324 0 + 4887528228
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 17:: NetworkConfigWatcher
0   ???                           	0x00007fff205b1e7e 0 + 140733736230526
1   ???                           	0x00007fff205b21f0 0 + 140733736231408
2   ???                           	0x000000012350432d 0 + 4887429933
3   ???                           	0x000000012350422f 0 + 4887429679
4   ???                           	0x00000001234b805d 0 + 4887117917
5   ???                           	0x00000001234e1085 0 + 4887285893
6   ???                           	0x00000001235339bc 0 + 4887624124
7   ???                           	0x0000000123573717 0 + 4887885591
8   ???                           	0x00007fff205e6950 0 + 140733736446288
9   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 18:
0   ???                           	0x00007fff205b48e2 0 + 140733736241378
1   ???                           	0x000000010a6a3c3b 0 + 4469701691
2   ???                           	0x00007fff205e6950 0 + 140733736446288
3   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 19:
0   ???                           	0x00007fff205b48e2 0 + 140733736241378
1   ???                           	0x000000010a6a3c3b 0 + 4469701691
2   ???                           	0x00007fff205e6950 0 + 140733736446288
3   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 20:
0   ???                           	0x00007fff205b48e2 0 + 140733736241378
1   ???                           	0x000000010a6a3c3b 0 + 4469701691
2   ???                           	0x00007fff205e6950 0 + 140733736446288
3   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 21:
0   ???                           	0x00007fff205b48e2 0 + 140733736241378
1   ???                           	0x000000010a6a3c3b 0 + 4469701691
2   ???                           	0x00007fff205e6950 0 + 140733736446288
3   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 22:
0   ???                           	0x00007fff205b48e2 0 + 140733736241378
1   ???                           	0x000000010a6a3c3b 0 + 4469701691
2   ???                           	0x00007fff205e6950 0 + 140733736446288
3   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 23:
0   ???                           	0x00007fff205b48e2 0 + 140733736241378
1   ???                           	0x000000010a6a3c3b 0 + 4469701691
2   ???                           	0x00007fff205e6950 0 + 140733736446288
3   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 24:
0   ???                           	0x00007fff205b48e2 0 + 140733736241378
1   ???                           	0x000000010a6a3c3b 0 + 4469701691
2   ???                           	0x00007fff205e6950 0 + 140733736446288
3   ???                           	0x00007fff205e247b 0 + 140733736428667

Thread 25:
0   ???                           	0x00007fff205e2458 0 + 140733736428632

Thread 26:
0   ???                           	0x00007fff205e2458 0 + 140733736428632

Thread 27:
0   ???                           	0x00007fff205e2458 0 + 140733736428632

Thread 28:
0   ???                           	0x00007fff205e2458 0 + 140733736428632

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x0000000118985e00  rcx: 0x00007f8036577a58  rdx: 0x0000000000000000
  rdi: 0x0000000000000307  rsi: 0x000000000000000a  rbp: 0x00007f8036577a80  rsp: 0x00007f8036577a58
   r8: 0x00007f8036577f48   r9: 0xcba9d7e8e408e5be  r10: 0x0000000118985e00  r11: 0x0000000000000246
  r12: 0x0000000000000307  r13: 0x000060000212d220  r14: 0x000000000000000a  r15: 0x0000000000000016
  rip: 0x00007fff205b8462  rfl: 0x0000000000000246  cr2: 0x0000000108f9bf04
  
Logical CPU:     0
Error Code:      0x02000148
Trap Number:     133

Thread 0 instruction stream not available.

Thread 0 last branch register state not available.


Binary Images:
                 0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
       0x1188ae000 -        0x118949fff  dyld (832.7.3)  /usr/lib/dyld

External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 7
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 191453
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=848K resident=0K(0%) swapped_out_or_unallocated=848K(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework              1152K        9 
Activity Tracing                   256K        1 
CG backing stores                 5940K       13 
CG image                           292K       26 
CoreAnimation                      268K       39 
CoreGraphics                        20K        4 
CoreUI image data                 5024K       49 
Foundation                          16K        1 
Kernel Alloc Once                    8K        1 
MALLOC                           376.4M      301 
MALLOC guard page                   32K        8 
MALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)
MALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)
OpenGL GLSL                        512K        6 
STACK GUARD                        112K       28 
Stack                            142.2M       29 
Stack Guard                       56.0M        1 
VM_ALLOCATE                      178.3M      359 
VM_ALLOCATE (reserved)           128.0M        3         reserved VM address space (unallocated)
__DATA                             224K        2 
__DATA_CONST                        32K        1 
__LINKEDIT                         240K        2 
__TEXT                             624K        1 
dylib                             1768K       27 
dylib (reserved)                    76K        7         reserved VM address space (unallocated)
mapped file                      354.7M      440 
shared memory                       48K        6 
===========                     =======  ======= 
TOTAL                              1.6G     1366 
TOTAL, minus reserved VM space     1.1G     1366 



Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-4.2.15
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,1
      Processor Name: 8-Core Intel Core i9
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 256 KB
      L3 Cache: 16 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0)

Software:

    System Software Overview:

      System Version: macOS 11.2.3 (20D91)
      Kernel Version: Darwin 20.3.0
      Time since boot: 1 day 16:42

Graphics/Displays:

    Intel UHD Graphics 630:

      Chipset Model: Intel UHD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3e9b
      Revision ID: 0x0002
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Family: Supported, Metal GPUFamily macOS 2

    AMD Radeon Pro 5500M:

      Chipset Model: AMD Radeon Pro 5500M
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x8
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x7340
      Revision ID: 0x0040
      ROM Revision: 113-D3220E-190
      VBIOS Version: 113-D32206U1-020
      Option ROM Version: 113-D32206U1-020
      EFI Driver Version: 01.A1.190
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 3072 x 1920 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        G246HL:
          Resolution: 1280 x 720
          UI Looks like: 1280 x 720 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: LWASA0028538
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: Yes
          Connection Type: Thunderbolt/DisplayPort

PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.0
    Babel: 2.8.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    ptyprocess: 0.6.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    tornado: 6.0.4
    traitlets: 5.0.4
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2

Change History (3)

comment:1 by pett, 5 years ago

Component: UnassignedCore
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionCrash with trashed stack

comment:2 by pett, 5 years ago

Resolution: can't reproduce
Status: assignedclosed

comment:3 by Tom Goddard, 5 years ago

All the stack traces with no info have come from Mac Big Sur. Maybe it would do better if ChimeraX were compiled on Big Sur.

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