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Opened 4 years ago
Closed 4 years ago
#4625 closed defect (duplicate)
MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ChainMenuButton has been deleted
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Comparison | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.4.115-1.el8.elrepo.x86_64-x86_64-with-glibc2.14
ChimeraX Version: 1.2 (2021-04-27 05:33:30 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.2 (2021-04-27)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /yonath_group/disha/Giardia_DH_AR_AB/30S_FR_GL_postprocess_masked.mrc
Opened 30S_FR_GL_postprocess_masked.mrc as #1, grid size 320,320,320, pixel
0.85, shown at level 0.0334, step 2, values float32
> close
> open
> /yonath_group/disha/Giardia_DH_AR_AB/Chimera/comparision/new_models/E_coli_7k00.pdb
Chain information for E_coli_7k00.pdb #1
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> select #1
149338 atoms, 154090 bonds, 1515 pseudobonds, 17719 residues, 3 models
selected
> show sel cartoons
> hide sel atoms
> color (#!1 & sel) cornflower blue
> select clear
> set bgColor white
> select #1
149338 atoms, 154090 bonds, 1515 pseudobonds, 17719 residues, 3 models
selected
> ui tool show "Color Actions"
> color sel light sky blue
> select clear
> open
> /yonath_group/disha/Giardia_DH_AR_AB/Chimera/comparision/new_models/human_4ug0.pdb
Summary of feedback from opening
/yonath_group/disha/Giardia_DH_AR_AB/Chimera/comparision/new_models/human_4ug0.pdb
---
warnings | Cannot find LINK/SSBOND residue MG (5148 )
Cannot find LINK/SSBOND residue MG (5102 )
Cannot find LINK/SSBOND residue MG (5103 )
Cannot find LINK/SSBOND residue MG (5103 )
Cannot find LINK/SSBOND residue MG (5104 )
250 messages similar to the above omitted
Chain information for human_4ug0.pdb #2
---
Chain | Description
2 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
LA | No description available
LB | No description available
LC | No description available
LD | No description available
LE | No description available
LF | No description available
LG | No description available
LH | No description available
LI | No description available
LJ | No description available
LL | No description available
LM | No description available
LN | No description available
LO | No description available
LP | No description available
LQ | No description available
LR | No description available
LS | No description available
LT | No description available
LU | No description available
LV | No description available
LW | No description available
LX | No description available
LY | No description available
LZ | No description available
La | No description available
Lb | No description available
Lc | No description available
Ld | No description available
Le | No description available
Lf | No description available
Lg | No description available
Lh | No description available
Li | No description available
Lj | No description available
Lk | No description available
Ll | No description available
Lm | No description available
Ln | No description available
Lo | No description available
Lp | No description available
Lr | No description available
Lz | No description available
SA | No description available
SB | No description available
SC | No description available
SD | No description available
SE | No description available
SF | No description available
SG | No description available
SH | No description available
SI | No description available
SJ | No description available
SK | No description available
SL | No description available
SM | No description available
SN | No description available
SO | No description available
SP | No description available
SQ | No description available
SR | No description available
SS | No description available
ST | No description available
SU | No description available
SV | No description available
SW | No description available
SX | No description available
SY | No description available
SZ | No description available
Sa | No description available
Sb | No description available
Sc | No description available
Sd | No description available
Se | No description available
Sf | No description available
Sg | No description available
> select #2
218776 atoms, 234831 bonds, 269 pseudobonds, 17789 residues, 3 models selected
> show sel cartoons
> hide sel atoms
> color sel pale green
> color sel aquamarine
> color sel pale turquoise
> color sel sea green
> color sel medium sea green
> color sel forest green
> color sel lime green
> color sel spring green
> color sel lawn green
> color sel lawn green
> color sel chartreuse
> color sel lime
> color sel light green
> select clear
> select #2
218776 atoms, 234831 bonds, 269 pseudobonds, 17789 residues, 3 models selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,2.7149,0,1,0,3.18,0,0,1,2.9332
> select clear
> undo
> undo
> undo
> undo
> open
> /yonath_group/disha/Giardia_DH_AR_AB/Final_model_map/60s_GL_afterRS12_aligned_new_map_real_space_refined.pdb
Chain information for 60s_GL_afterRS12_aligned_new_map_real_space_refined.pdb
#3
---
Chain | Description
1 | No description available
3 | No description available
4 | No description available
A | No description available
B | No description available
C | No description available
D | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
o | No description available
p | No description available
> select #3
104108 atoms, 111779 bonds, 96 pseudobonds, 8479 residues, 2 models selected
> show sel cartoons
> hide sel atoms
> color sel light gray
> color sel hot pink
> color sel orchid
> select clear
> open
> /yonath_group/disha/Giardia_DH_AR_AB/Final_model_map/Giardia_SSU_real_space_refined.pdb
Chain information for Giardia_SSU_real_space_refined.pdb #4
---
Chain | Description
2 | No description available
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
n | No description available
> select #4
58253 atoms, 62084 bonds, 98 pseudobonds, 5116 residues, 2 models selected
> show sel cartoons
> hide sel atoms
> color sel orchid
> select clear
> hide #!1 models
> hide #!2 models
> select #3
104108 atoms, 111779 bonds, 96 pseudobonds, 8479 residues, 2 models selected
> select #4
58253 atoms, 62084 bonds, 98 pseudobonds, 5116 residues, 2 models selected
> color sel light gray
> select #3
104108 atoms, 111779 bonds, 96 pseudobonds, 8479 residues, 2 models selected
> color sel light gray
> select clear
> select #2/L8 add #3/3
Expected a keyword
> select #2/L8
Nothing selected
> show #!2 models
> select #2/L8
Nothing selected
> select #2/C
Nothing selected
> select #2/L8
Nothing selected
> select #3/3
2501 atoms, 2797 bonds, 117 residues, 1 model selected
> select ~sel
527974 atoms, 559987 bonds, 1978 pseudobonds, 48986 residues, 10 models
selected
> hide sel & #!2-4 cartoons
> color (#!2-4 & sel) red
> undo
> select #3/3
2501 atoms, 2797 bonds, 117 residues, 1 model selected
> color sel orange red
> select clear
> select #2/L8
Nothing selected
> select #2/C[auth L8]
Expected a keyword
> select #2/8
3316 atoms, 3700 bonds, 158 residues, 1 model selected
> hide sel cartoons
> hide sel cartoons
> show sel cartoons
> ui tool show "Show Sequence Viewer"
> select #2/8 showseq
Expected a keyword
> sequence chain #2/8
Alignment identifier is 2/8
> select #3/4
2958 atoms, 3304 bonds, 2 pseudobonds, 138 residues, 2 models selected
> show sel cartoons
> view matrix models #3,1,0,0,-9.893,0,1,0,31.869,0,0,1,-37.436
> undo
> select #2
218776 atoms, 234831 bonds, 269 pseudobonds, 17789 residues, 3 models selected
> select #3
104108 atoms, 111779 bonds, 96 pseudobonds, 8479 residues, 2 models selected
> select #3/3
2501 atoms, 2797 bonds, 117 residues, 1 model selected
> hide sel cartoons
> view matrix models #3,1,0,0,3.2939,0,1,0,-4.6715,0,0,1,-3.6376
> undo
> select #2
218776 atoms, 234831 bonds, 269 pseudobonds, 17789 residues, 3 models selected
> ~select #2
Nothing selected
> select #2
218776 atoms, 234831 bonds, 269 pseudobonds, 17789 residues, 3 models selected
> select #3
104108 atoms, 111779 bonds, 96 pseudobonds, 8479 residues, 2 models selected
> select add #3/4
104108 atoms, 111779 bonds, 96 pseudobonds, 8479 residues, 2 models selected
> select #3/4
2958 atoms, 3304 bonds, 2 pseudobonds, 138 residues, 2 models selected
> select add #2/8
6274 atoms, 7004 bonds, 2 pseudobonds, 296 residues, 3 models selected
> view matrix models
> #2,1,0,0,-0.64445,0,1,0,0.85281,0,0,1,0.91545,#3,1,0,0,-0.64445,0,1,0,0.85281,0,0,1,0.91545
> view matrix models
> #2,1,0,0,24.395,0,1,0,6.9243,0,0,1,-9.1585,#3,1,0,0,24.395,0,1,0,6.9243,0,0,1,-9.1585
> ui tool show Matchmaker
> matchmaker #!2 to #3/4 & sel pairing bs showAlignment true
Reference chain (60s_GL_afterRS12_aligned_new_map_real_space_refined.pdb (#3)
chain 4) not compatible with BLOSUM-62 similarity matrix
> ui tool show Matchmaker
> matchmaker #!2 to #3/4 pairing bs matrix Nucleic showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | Nucleic
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 60s_GL_afterRS12_aligned_new_map_real_space_refined.pdb, chain 4
(#3) with human_4ug0.pdb, chain 2 (#2), sequence alignment score = 1.4
Alignment identifier is 1
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1
Hiding conservation header for alignment 1
Chains used in RMSD evaluation for alignment 1: human_4ug0.pdb #2/2,
60s_GL_afterRS12_aligned_new_map_real_space_refined.pdb #3/4
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1
RMSD between 3 pruned atom pairs is 1.151 angstroms; (across all 7 pairs:
6.517)
> view matrix models
> #2,0.61444,-0.7756,0.14459,126.33,0.21915,-0.0082704,-0.97566,329.56,0.75791,0.63117,0.16489,33.926,#3,1,0,0,10.121,0,1,0,8.583,0,0,1,-8.8646
> view matrix models
> #2,0.61444,-0.7756,0.14459,106.18,0.21915,-0.0082704,-0.97566,324.92,0.75791,0.63117,0.16489,31.251,#3,1,0,0,-10.027,0,1,0,3.9459,0,0,1,-11.539
> select clear
> ui tool show Matchmaker
> matchmaker #2/8 to #3/4 pairing ss matrix Nucleic showAlignment true
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | Nucleic
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 60s_GL_afterRS12_aligned_new_map_real_space_refined.pdb, chain 4
(#3) with human_4ug0.pdb, chain 8 (#2), sequence alignment score = 1.4
Alignment identifier is 2
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/ui/widgets/item_chooser.py", line 305, in _items_change
if not hasattr(self, '_recursion'):
RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/ui/widgets/item_chooser.py", line 305, in _items_change
if not hasattr(self, '_recursion'):
See log for complete Python traceback.
Hiding conservation header for alignment 2
Chains used in RMSD evaluation for alignment 2: human_4ug0.pdb #2/8,
60s_GL_afterRS12_aligned_new_map_real_space_refined.pdb #3/4
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2
RMSD between 6 pruned atom pairs is 1.229 angstroms; (across all 7 pairs:
2.148)
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/ui/widgets/item_chooser.py", line 305, in _items_change
if not hasattr(self, '_recursion'):
RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/ui/widgets/item_chooser.py", line 305, in _items_change
if not hasattr(self, '_recursion'):
See log for complete Python traceback.
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/ui/widgets/item_chooser.py", line 305, in _items_change
if not hasattr(self, '_recursion'):
RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted
File "/opt/UCSF/ChimeraX/lib/python3.8/site-
packages/chimerax/ui/widgets/item_chooser.py", line 305, in _items_change
if not hasattr(self, '_recursion'):
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 418.113
OpenGL renderer: Quadro RTX 4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: ASUS
Model: System Product Name
OS: CentOS Stream 8
Architecture: 64bit ELF
Virutal Machine: none
CPU: 24 AMD Ryzen 9 5900X 12-Core Processor
Cache Size: 512 KB
Memory:
total used free shared buff/cache available
Mem: 62Gi 13Gi 33Gi 499Mi 16Gi 48Gi
Swap: 31Gi 0B 31Gi
Graphics:
05:00.0 VGA compatible controller [0300]: NVIDIA Corporation TU104GL [Quadro RTX 4000] [10de:1eb1] (rev a1)
Subsystem: NVIDIA Corporation Device [10de:12a0]
Kernel driver in use: nvidia
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.4.1
chardet: 3.0.4
ChimeraX-AddCharge: 1.0
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.3
ChimeraX-AtomicLibrary: 3.1.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-LinuxSupport: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.3
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.7
distlib: 0.3.1
distro: 1.5.0
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 1.1.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.2.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Structure Comparison |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ChainMenuButton has been deleted |
comment:2 by , 4 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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