Opened 6 years ago

Closed 5 years ago

#2291 closed defect (fixed)

Tile command: 'Volume' object has no attribute 'atomspec'

Reported by: chimerax-bug-report@… Owned by: Conrad Huang
Priority: normal Milestone:
Component: Structure Comparison Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-18.6.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-08-06)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.91 (2019-08-06)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
/Users/fengwei.zheng/Downloads/cryosparc_P21_J3_005_volume_map_sharp.mrc
/Users/fengwei.zheng/Downloads/cryosparc_P21_J6_003_volume_map_sharp.mrc

Opened cryosparc_P21_J3_005_volume_map_sharp.mrc, grid size 148,148,148, pixel
1.22, shown at level 0.511, step 1, values float32  

> tile #1.1 #1.2

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2655, in run  
result = ci.function(session, **kw_args)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/tile.py", line 51, in tile  
view_dist, anchor_spec, m.atomspec))  
AttributeError: 'Volume' object has no attribute 'atomspec'  
  
AttributeError: 'Volume' object has no attribute 'atomspec'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/tile.py", line 51, in tile  
view_dist, anchor_spec, m.atomspec))  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-2.9.26
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Change History (2)

comment:1 by pett, 6 years ago

Component: UnassignedStructure Comparison
Owner: set to Conrad Huang
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionTile command: 'Volume' object has no attribute 'atomspec'

comment:2 by Elaine Meng, 5 years ago

Resolution: fixed
Status: assignedclosed

duplicate of other tickets (e.g. #2202) and has been fixed

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