Opened 5 years ago

Last modified 5 years ago

#4589 accepted defect

PDB secondary structure info lost

Reported by: Elaine Meng Owned by: Eric Pettersen
Priority: major Milestone:
Component: Input/Output Version:
Keywords: Cc: Greg Couch, Tom Goddard
Blocked By: Blocking:
Notify when closed: vasquezs@mit.edu Platform: all
Project: ChimeraX

Description

Non-alpha helix types and strand ordering and sheet membership from the HELIX and SHEET records are forgotten when a PDB file is read, and not included when a PDB file is written out. I do not know if this also applies to mmCIF input/output but I suspect it does. Examples: 3.10 helix in 2jqs is written out as alpha helix, 1vrx strand information (other than that the residues are strand) is also missing from output PDB file.

Change History (1)

comment:1 by Eric Pettersen, 5 years ago

Component: Unassigned → Input/Output
Status: assigned → accepted
Note: See TracTickets for help on using tickets.