Opened 7 years ago
Closed 5 years ago
#1753 closed defect (fixed)
cartoon style command interprets spec with atoms but without biopolymer residues as "coil"
Reported by: | Elaine Meng | Owned by: | Conrad Huang |
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Priority: | moderate | Milestone: | |
Component: | Depiction | Version: | |
Keywords: | Cc: | chimera-programmers | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
I am prototyping possible presets and noticed that in certain cases "cartoon style" interprets a non-ribbonable spec as "coil" which is not good For example
open 2gbp
cartoon style ligand thick 2
... makes all the coil sections fat.
You might say "that's dumb, who would do that"? Well, my actual use case was prototyping possible cartoon-related presets with multiple test structures, and this case took me forever to figure out what was happening:
open 4hhb
cartoon style (nucleic|strand) x rectangle
This makes all the coil have rectangular cross-section because 4hhb has no strand, and although it appears to have no nucleic, there are two (non-polymer, non-ribbonable) PO4 residues incorrectly classified as nucleic.
So now that I understand what it's doing, it should do the right thing and not change the coil if I don't specify any coil atoms (and spec isn't blank).
Change History (2)
comment:1 by , 7 years ago
comment:2 by , 5 years ago
Resolution: | → fixed |
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Status: | assigned → closed |
apparently fixed, including the 2gbp example
Eric just fixed the 4hhb PO4 incorrect classification, at least, so perhaps the problem will be rarely encountered.