Drawing many pseudobonds: glTexImage2D: invalid value

[DLMLEN001@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 0.93 (2020-04-03)
Description
Structure analysis, show contacts

Log:
UCSF ChimeraX version: 0.93 (2020-04-03)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\Users\Lenye\Dropbox\Andani's thesis
> Paper\working_2_noh_AndaniWT-0-coot-4_real_space_refined-coot-2.pdb" format
> PDB

Summary of feedback from opening C:\Users\Lenye\Dropbox\Andani's thesis
Paper\working_2_noh_AndaniWT-0-coot-4_real_space_refined-coot-2.pdb  
---  
warnings | Ignored bad PDB record found on line 20  
GEOMETRY RESTRAINTS LIBRARY: CDL v1.2  
  
Ignored bad PDB record found on line 21  
DEVIATIONS FROM IDEAL VALUES.  
  
Ignored bad PDB record found on line 22  
BOND : 0.006 0.061 38866  
  
Ignored bad PDB record found on line 23  
ANGLE : 0.992 12.525 52737  
  
Ignored bad PDB record found on line 24  
CHIRALITY : 0.059 0.455 5550  
  
16 messages similar to the above omitted  
  
Chain information for working_2_noh_AndaniWT-0-coot-4_real_space_refined-
coot-2.pdb #1  
---  
Chain | Description  
A C D E I K L N Q R | No description available  
B H J O | No description available  
G | No description available  
  

> show cartoons

> hide atoms

> select /B:223

8 atoms, 7 bonds, 1 model selected  

> show sel atoms

> style sel stick

Changed 8 atom styles  

> toolshed show Contacts

> contacts resSeparation 5 select true dashes 3 radius 0.5 showDist true
> reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    10674 contacts
        atom1           atom2       overlap  distance
    /E MET 255 CE   /E HIS 241 CE1   3.032    0.608
    /N ARG 231 NH2  /N CYS 225 CB    2.496    1.024
    /R ARG 231 NH1  /R CYS 225 SG    2.360    0.650
    /N ILE 156 CD1  /N PHE 8 CE1     2.357    1.283
    /G MET 255 CE   /G HIS 241 CB    2.351    1.409
    /E MET 255 CE   /E HIS 241 NE2   2.247    1.273
    /N ARG 231 NH1  /N CYS 225 O     2.239    0.421
    /C PHE 234 CE2  /C ILE 60 CB     2.200    1.440
    /C MET 148 CE   /C ARG 129 NH1   2.168    1.352
    /C TYR 316 OH   /A GLY 122 C     2.119    0.951
    /C TYR 316 CZ   /A ASP 123 N     2.112    1.138
    /C PHE 234 CZ   /C ILE 60 CG2    2.097    1.543
    /N CYS 225 CA   /N ARG 231 NH2   2.085    1.435
    /E MET 148 CE   /E ARG 129 NH1   2.081    1.439
    /C TYR 316 CE1  /A ASP 123 CA    2.056    1.584
    /Q ILE 263 CD1  /Q VAL 13 CG2    2.043    1.717
    /H GLN 115 CG   /H MET 163 CE    2.011    1.749
    /K MET 148 CE   /K ARG 129 NH1   2.005    1.515
    /A GLY 122 CA   /C TYR 316 OH    1.990    1.350
    /N ARG 231 CZ   /N CYS 225 CB    1.961    1.529
    /E MET 255 CE   /E HIS 241 ND1   1.958    1.562
    /C TYR 316 CE1  /A ASP 123 N     1.927    1.473

[many of these deleted]

    /G HIS 71 CE1   /H GLU 271 CD    -0.388    4.028
    /H PHE 8 CD2    /H LYS 42 CB     -0.388    4.028
    /E LEU 111 C    /E TRP 141 CD1   -0.388    3.758
    /C TYR 278 CB   /E TYR 70 CE2    -0.388    4.028
    /I TYR 74 CD2   /I LYS 106 CD    -0.388    4.028
    /Q ILE 215 CD1  /Q ALA 16 CA     -0.388    4.148
    /O THR 212 CB   /O PRO 47 CB     -0.388    4.148
    /C THR 97 CG2   /C LYS 42 N      -0.388    3.908
    /E SER 213 CA   /E THR 242 OG1   -0.388    3.728
    /C TYR 19 CB    /C MET 220 CE    -0.388    4.148
    /Q TRP 165 CE3  /Q SER 134 C     -0.388    3.758
    /D VAL 256 CG1  /D GLY 262 CA    -0.388    4.148
    /H VAL 209 O    /H ILE 244 CG2   -0.388    3.688
    /O PRO 6 O      /O VAL 270 CB    -0.388    3.688
    /N ILE 319 CD1  /N PHE 314 CD1   -0.388    4.028
    /H MET 220 CE   /H TYR 19 OH     -0.389    3.729
    /A LEU 139 CD2  /L LEU 139 CD2   -0.389    4.149
    /G ASN 307 ND2  /H GLN 298 CG    -0.389    3.909
    /I TYR 54 O     /I TYR 19 OH     -0.389    2.869
    /H MET 220 CB   /H TYR 19 CE2    -0.389    4.029
    /B MET 211 CE   /B ASP 194 O     -0.389    3.689
    /H CYS 164 CB   /H LYS 130 CE    -0.389    4.149
    /I GLY 122 O    /K TYR 316 CB    -0.389    3.689
    /C ILE 268 O    /C LYS 7 CB      -0.389    3.689
    /I PHE 8 O      /I ILE 268 N     -0.389    3.049
    /A PRO 52 CG    /A LEU 73 CD1    -0.389    4.149
    /I PRO 55 CB    /I ILE 140 CD1   -0.389    4.149
    /E CYS 164 O    /E TRP 188 CE3   -0.389    3.569
    /B ASN 296 CA   /L LEU 306 CB    -0.389    4.149
    /B TYR 233 OH   /C GLU 64 CB     -0.389    3.729
    /I ASN 288 ND2  /J MET 131 CB    -0.389    3.909
    /G SER 239 OG   /G GLU 259 CD    -0.389    3.729
    /D TYR 200 CD1  /C TYR 200 CG    -0.389    3.759
    /C MET 174 CG   /D LEU 171 CG    -0.389    4.149
    /Q LEU 113 CD2  /Q TRP 141 CZ2   -0.389    4.029
    /J ILE 33 CG1   /J VAL 99 CG2    -0.389    4.149
    /J ARG 129 CG   /J MET 148 SD    -0.389    4.039
    /R PHE 57 CA    /R ILE 224 CD1   -0.389    4.149
    /I ARG 199 NH2  /I GLY 249 C     -0.389    3.639
    /G GLU 181 C    /G THR 207 CG2   -0.389    3.879
    /H HIS 184 CE1  /H LEU 162 CG    -0.389    4.029
    /C TRP 117 CB   /C PHE 152 CZ    -0.390    4.030
    /Q SER 187 O    /Q GLU 48 CG     -0.390    3.690
    /G LEU 291 CD2  /E PHE 295 CE1   -0.390    4.030
    /D ALA 16 CB    /D ILE 215 CG1   -0.390    4.150
    /H VAL 13 CB    /H PHE 46 CD1    -0.390    4.030
    /Q MET 211 C    /Q THR 242 CB    -0.390    3.880
    /E ILE 196 CG2  /G TYR 200 N     -0.390    3.910
    /I GLN 14 CG    /I ILE 215 CG2   -0.390    4.150
    /R TRP 117 O    /R ILE 125 N     -0.390    3.050
    /N ALA 114 CA   /N ARG 129 CA    -0.390    4.150
    /Q LYS 7 NZ     /Q ASP 269 CB    -0.390    3.910
    /J SER 29 CB    /J PHE 46 CE1    -0.390    4.030
    /B HIS 167 NE2  /B HIS 184 CE1   -0.390    3.790
    /R TYR 216 OH   /R TYR 191 CA    -0.390    3.730
    /A TYR 98 N     /A ASN 119 C     -0.390    3.640
    /K ILE 156 CG2  /K LYS 42 NZ     -0.390    3.910
    /Q THR 207 O    /Q PRO 247 CB    -0.390    3.690
    /L VAL 13 CA    /L GLY 262 O     -0.390    3.690
    /A THR 212 O    /A TRP 188 CA    -0.390    3.690
    /E PRO 47 CB    /E SER 214 CA    -0.390    4.150
    /R ASP 194 OD2  /R MET 211 SD    -0.390    3.580
    /L ASN 294 OD1  /R LYS 304 CD    -0.390    3.690
    /E ILE 196 CG1  /G ILE 196 CD1   -0.390    4.150
    /B MET 149 CE   /B PHE 295 CZ    -0.390    4.030
    /Q PHE 314 C    /R ASP 123 CB    -0.390    3.880
    /C MET 176 O    /C GLU 181 CB    -0.390    3.690
    /B ASP 123 CB   /L TYR 316 N     -0.390    3.910
    /C TYR 98 OH    /C GLU 155 CB    -0.390    3.730
    /H ASP 143 CG   /H ARG 132 CG    -0.390    4.150
    /A PHE 69 CB    /A PHE 57 CE2    -0.390    4.030
    /Q MET 211 CB   /Q CYS 243 N     -0.390    3.910
    /K LYS 28 CD    /K PRO 17 CB     -0.390    4.150
    /R TRP 188 NE1  /R HIS 167 CE1   -0.390    3.790
    /H ILE 196 CA   /O ILE 196 CD1   -0.390    4.150
    /B ALA 133 CB   /B ARG 138 NE    -0.391    3.911
    /K VAL 270 CG1  /K GLN 182 OE1   -0.391    3.691
    /R SER 104 CA   /R TYR 112 O     -0.391    3.691
    /E HIS 184 NE2  /E TYR 201 CZ    -0.391    3.641
    /L TYR 74 CD1   /L LYS 106 CD    -0.391    4.031
    /B ILE 18 CD1   /B LYS 28 CD     -0.391    4.151
    /L GLU 48 OE1   /L PRO 189 N     -0.391    3.451
    /I LEU 43 O     /I ALA 11 N      -0.391    3.051
    /J ALA 202 CA   /J THR 207 N     -0.391    3.911
    /G GLY 61 N     /O HIS 62 CB     -0.391    3.911
    /J TRP 117 CD1  /J PHE 152 CE1   -0.391    3.911
    /N ILE 263 CG2  /N VAL 13 CG2    -0.391    4.151
    /O VAL 209 CG1  /O TYR 245 CB    -0.391    4.151
    /J TYR 98 CD2   /J PRO 120 CD    -0.391    4.031
    /B TYR 316 CD2  /D LYS 93 NZ     -0.391    3.791
    /A VAL 78 CG2   /A ALA 84 CB     -0.391    4.151
    /N CYS 103 O    /N LEU 113 CA    -0.391    3.691
    /B ALA 92 CB    /B THR 97 O      -0.391    3.691
    /J LEU 173 CD2  /J TYR 201 CD2   -0.391    4.031
    /Q HIS 305 CA   /R PHE 295 O     -0.391    3.691
    /N VAL 185 CG2  /N GLY 160 O     -0.391    3.691
    /K TYR 278 CE2  /N ARG 67 CB     -0.391    4.031
    /E ALA 264 CB   /E SER 253 OG    -0.391    3.731
    /R TYR 316 CE2  /L ASN 121 O     -0.392    3.572
    /K MET 148 O    /K HIS 128 ND1   -0.392    3.052
    /E TRP 117 CH2  /E LEU 159 CB    -0.392    4.032
    /I HIS 62 CB    /H ILE 60 CA     -0.392    4.152
    /I TRP 117 CB   /I GLY 126 O     -0.392    3.692
    /D TYR 201 O    /D THR 207 CG2   -0.392    3.692
    /L PRO 55 CG    /L TRP 141 CZ2   -0.392    4.032
    /H ILE 125 CD1  /H PHE 152 CD2   -0.392    4.032
    /K GLN 297 CA   /N ASN 307 O     -0.392    3.692
    /J MET 163 SD   /J GLN 115 CG    -0.392    4.042
    /L PHE 152 CZ   /L GLY 126 N     -0.392    3.792
    /C SER 253 OG   /C ALA 264 CB    -0.392    3.732
    /B CYS 225 CB   /B GLN 230 CB    -0.392    4.152
    /C MET 149 SD   /C ASP 172 OD1   -0.392    3.582
    /C PRO 282 CB   /D PRO 170 CD    -0.392    4.152
    /I TYR 5 CB     /I GLU 271 CA    -0.392    4.152
    /A ALA 58 O     /L PRO 63 CD     -0.392    3.692
    /I ASN 158 O    /I GLN 182 CA    -0.393    3.693
    /G ASP 194 CB   /G TRP 188 NE1   -0.393    3.913
    /A ALA 24 CB    /A ILE 18 CG2    -0.393    4.153
    /B MET 131 CG   /B ASP 172 OD1   -0.393    3.693
    /R CYS 225 CB   /R GLN 230 CB    -0.393    4.153
    /L ILE 244 CD1  /L ALA 264 O     -0.393    3.693
    /L ASP 281 N    /L TYR 286 CB    -0.393    3.913
    /E HIS 184 O    /E LEU 210 N     -0.393    3.053
    /G TYR 286 CB   /G ASP 281 CA    -0.393    4.153
    /A ILE 101 O    /A LEU 116 CA    -0.393    3.693
    /N ALA 45 CA    /N CYS 100 O     -0.393    3.693
    /J TYR 245 CZ   /J MET 211 CE    -0.393    3.883
    /N ALA 49 CB    /N TYR 54 CA     -0.393    4.153
    /E TYR 200 OH   /G LEU 173 CD2   -0.393    3.733
    /N TRP 56 CZ2   /N TYR 216 CE1   -0.393    3.913
    /A PRO 299 CD   /C GLN 309 NE2   -0.393    3.913
    /B PHE 152 CZ   /B TRP 117 CE2   -0.393    3.763
    /C LEU 22 CD2   /C ALA 77 CA     -0.394    4.154
    /O TYR 112 CE2  /O ARG 129 CZ    -0.394    3.764
    /B GLN 168 CD   /B SER 197 OG    -0.394    3.464
    /L ALA 15 CB    /L LEU 32 CD2    -0.394    4.154
    /A PHE 46 CB    /A CYS 100 O     -0.394    3.694
    /B PHE 46 O     /B THR 212 CB    -0.394    3.694
    /B ASN 177 CB   /B THR 205 CG2   -0.394    4.154
    /K MET 211 CE   /K HIS 241 CA    -0.394    4.154
    /E VAL 44 O     /E VAL 99 CA     -0.394    3.694
    /Q TYR 19 CD2   /Q MET 223 CE    -0.394    4.034
    /B PRO 247 C    /B TYR 276 CD2   -0.394    3.764
    /I TYR 200 CB   /J TYR 200 CG    -0.394    3.884
    /Q ASP 107 OD1  /Q TYR 112 CE2   -0.394    3.574
    /H SER 187 OG   /H GLU 48 N      -0.394    3.094
    /L VAL 273 CG2  /L GLN 206 CB    -0.394    4.154
    /N VAL 13 CG1   /N LEU 32 CD2    -0.394    4.154
    /N ILE 101 CD1  /N PHE 46 CG     -0.394    3.884
    /N ALA 92 CB    /N VAL 99 CG1    -0.394    4.154
    /O TYR 245 CD1  /O PRO 251 N     -0.394    3.794
    /E LEU 113 CB   /E TRP 141 CE2   -0.394    3.884
    /E ARG 132 CB   /G TYR 286 CE1   -0.394    4.034
    /G GLU 181 CD   /G GLY 160 C     -0.394    3.884
    /C TRP 188 O    /C SER 213 OG    -0.394    2.874
    /K SER 292 CA   /N VAL 302 O     -0.394    3.694
    /H ILE 280 CD1  /O GLN 168 CB    -0.394    4.154
    /H CYS 103 O    /H LEU 113 CG    -0.395    3.695
    /R LEU 22 CD2   /R VAL 78 CA     -0.395    4.155
    /K ILE 33 CD1   /K VAL 99 CB     -0.395    4.155
    /G LEU 159 CD2  /G VAL 183 O     -0.395    3.695
    /G TYR 200 CD1  /E SER 197 CA    -0.395    4.035
    /Q ALA 58 CA    /Q THR 66 OG1    -0.395    3.735
    /N TYR 316 CZ   /K LYS 93 CE     -0.395    3.885
    /B PRO 247 CG   /B ARG 272 CZ    -0.395    3.885
    /E GLU 48 CD    /E PRO 189 CB    -0.395    4.155
    /J LEU 20 CD1   /J GLU 72 CB     -0.395    4.155
    /I PRO 170 O    /J PRO 170 CB    -0.395    3.695
    /D PHE 8 CB     /D LYS 42 CB     -0.395    4.155
    /H PHE 8 CZ     /H ILE 156 CG1   -0.395    4.035
    /E ASN 294 CG   /G ASN 294 ND2   -0.395    3.645
    /R GLU 48 CA    /R SER 102 OG    -0.395    3.735
    /I HIS 241 CD2  /I VAL 256 O     -0.396    3.576
    /H GLN 182 C    /H THR 207 OG1   -0.396    3.466
    /N GLN 206 O    /N PRO 247 CB    -0.396    3.696
    /B TRP 188 CZ2  /B SER 197 CB    -0.396    4.036
    /L CYS 103 O    /L LEU 113 CB    -0.396    3.696
    /L LEU 20 CD1   /L GLU 72 C      -0.396    3.886
    /G VAL 270 CG1  /G GLN 182 CD    -0.396    3.886
    /J ALA 49 N     /J SER 102 CB    -0.396    3.916
    /G MET 176 O    /G GLU 181 CB    -0.396    3.696
    /L LYS 238 O    /L TYR 216 CZ    -0.396    3.426
    /J TYR 200 CG   /I TYR 200 CG    -0.396    3.616
    /J ILE 85 CD1   /J LEU 124 CD2   -0.396    4.156
    /A VAL 151 CG2  /A GLY 160 CA    -0.396    4.156
    /E MET 174 SD   /G PRO 170 CD    -0.396    4.046
    /I GLN 168 CB   /J ILE 280 CD1   -0.396    4.156
    /I PHE 8 CD2    /I ILE 268 CD1   -0.396    4.036
    /A GLY 161 CA   /A HIS 184 CE1   -0.396    4.036
    /J GLN 206 CG   /J TYR 276 CB    -0.396    4.156
    /C ILE 125 CA   /E VAL 313 CB    -0.396    4.156
    /E ARG 129 CB   /E MET 148 CB    -0.396    4.156
    /Q ASN 180 O    /Q ASN 158 CG    -0.396    3.426
    /H TYR 278 OH   /O VAL 135 CG2   -0.396    3.736
    /L VAL 99 CG1   /L PHE 118 CG    -0.396    3.886
    /Q MET 163 SD   /Q LYS 130 CB    -0.396    4.046
    /G GLU 48 CA    /G SER 187 OG    -0.396    3.736
    /I VAL 185 CB   /I LEU 210 CB    -0.396    4.156
    /J ILE 196 CG2  /I ARG 199 CZ    -0.397    3.887
    /D TYR 245 CD1  /D PRO 251 N     -0.397    3.797
    /C PHE 50 CZ    /C SER 29 OG     -0.397    3.617
    /C MET 211 CG   /C SER 198 OG    -0.397    3.737
    /N TRP 188 CZ2  /N ASP 193 O     -0.397    3.577
    /C ALA 133 CB   /C ARG 138 N     -0.397    3.917
    /Q ALA 12 O     /Q ILE 263 CG1   -0.397    3.697
    /J ARG 129 NH2  /J TYR 112 CE2   -0.397    3.797
    /H CYS 164 CB   /H PRO 189 CD    -0.397    4.157
    /H ASN 158 ND2  /H ASN 180 C     -0.397    3.647
    /J VAL 270 CG2  /J GLN 182 OE1   -0.397    3.697
    /G LYS 127 CD   /G LEU 116 CD2   -0.397    4.157
    /H TYR 191 O    /H LYS 238 CB    -0.397    3.697
    /A TYR 278 CE2  /C ARG 67 CB     -0.397    4.037
    /G PHE 59 C     /O PRO 63 CD     -0.397    3.887
    /B ILE 268 O    /B PHE 8 N       -0.397    3.057
    /J GLN 168 NE2  /J SER 197 CB    -0.397    3.917
    /A THR 242 CA   /A SER 213 OG    -0.397    3.737
    /H LYS 7 CA     /H ILE 268 C     -0.397    3.887
    /J ILE 33 CD1   /J VAL 99 CB     -0.397    4.157
    /N ILE 60 O     /N GLN 230 CD    -0.397    3.427
    /R GLU 48 CB    /R PRO 189 CA    -0.398    4.158
    /J GLY 161 CA   /J VAL 185 C     -0.398    3.888
    /I PRO 120 CG   /I TYR 98 CZ     -0.398    3.888
    /Q GLU 48 CA    /Q SER 187 CB    -0.398    4.158
    /G ARG 9 O      /G ALA 41 CB     -0.398    3.698
    /L PRO 17 O     /L GLU 219 CD    -0.398    3.698
    /D TYR 316 CA   /G GLY 122 O     -0.398    3.698
    /J ALA 49 N     /J SER 102 OG    -0.398    3.098
    /K ALA 49 N     /K SER 102 CB    -0.398    3.918
    /Q MET 149 CA   /Q MET 176 CE    -0.398    4.158
    /L TYR 19 CD2   /L GLU 219 C     -0.398    3.768
    /D VAL 270 CG1  /D GLN 182 CD    -0.398    3.888
    /L LYS 93 CA    /L PRO 120 O     -0.398    3.698
    /L VAL 13 CG2   /L ILE 263 CB    -0.398    4.158
    /G SER 104 CB   /G TRP 141 NE1   -0.398    3.918
    /L ILE 125 CA   /L PHE 152 CE1   -0.398    4.038
    /K GLU 271 CA   /K TYR 5 CD1     -0.398    4.038
    /E TYR 98 CE1   /E THR 154 CG2   -0.398    4.038
    /I TYR 276 CE2  /I ASP 248 N     -0.398    3.798
    /K LEU 124 C    /N VAL 313 CG1   -0.398    3.888
    /I VAL 78 CG1   /I ALA 84 CB     -0.399    4.159
    /A SER 187 CB   /A GLU 48 CB     -0.399    4.159
    /A LEU 20 CD1   /A GLU 72 CD     -0.399    4.159
    /J THR 207 N    /J ALA 202 C     -0.399    3.649
    /E PRO 47 CB    /E SER 213 CA    -0.399    4.159
    /D GLN 14 CD    /D ILE 215 CG2   -0.399    3.889
    /O ILE 80 CG1   /O ILE 85 CD1    -0.399    4.159
    /A PRO 247 CG   /A ARG 272 NH2   -0.399    3.919
    /B ASN 307 CB   /D GLN 298 OE1   -0.399    3.699
    /B ASP 123 CA   /L PHE 314 O     -0.399    3.699
    /K THR 154 CB   /K TYR 98 CZ     -0.399    3.889
    /D GLU 105 CD   /D LYS 127 CE    -0.399    4.159
    /O PHE 234 CD2  /O LYS 221 CE    -0.399    4.039
    /A GLU 64 CB    /L TYR 233 OH    -0.399    3.739
    /I LEU 43 CA    /I TYR 98 O      -0.399    3.699
    /C GLU 181 CD   /C GLY 160 N     -0.399    3.919
    /C ILE 85 CD1   /C ILE 80 CA     -0.399    4.159
    /E MET 131 O    /E ASP 143 CA    -0.399    3.699
    /A VAL 151 CB   /A GLN 179 CB    -0.399    4.159
    /L LEU 111 CD1  /L LYS 106 CG    -0.400    4.160
    /K ASN 158 CB   /K ASN 180 C     -0.400    3.890
    /L ILE 203 CG1  /L ASP 248 O     -0.400    3.700
    /I LEU 173 CD2  /I TYR 201 CD2   -0.400    4.040
    /B GLU 48 CB    /B PRO 189 N     -0.400    3.920
    /H LEU 124 CB   /H PHE 118 CZ    -0.400    4.040
    /N ILE 60 CG2   /N GLN 230 CB    -0.400    4.160
    /Q GLU 96 CA    /Q PRO 120 CB    -0.400    4.160
    /R GLN 182 C    /R THR 207 CB    -0.400    3.890
    /N ASP 194 O    /N MET 211 SD    -0.400    3.590
    /D LYS 106 CD   /D ALA 77 CB     -0.400    4.160
    /L ARG 138 NH2  /L ARG 132 CZ    -0.400    3.650
    /O CYS 100 SG   /O GLN 115 CD    -0.400    3.780
    /C TYR 316 CZ   /A ASP 123 OD1   -0.400    3.430
    

  
10674 contacts  
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command "graphics restart" after changing the settings that caused the error.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\updateloop.py", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py", line 166, in draw  
self._draw_scene(camera, drawings)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py", line 250, in _draw_scene  
draw_on_top(r, on_top_drawings)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1486, in draw_on_top  
_draw_multiple(drawings, renderer, Drawing.LAST_DRAW_PASS)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1431, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 716, in draw  
self.draw_self(renderer, draw_pass)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 732, in draw_self  
self._draw_geometry(renderer)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 762, in _draw_geometry  
t.bind_texture()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2874, in bind_texture  
self.fill_opengl_texture()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2909, in fill_opengl_texture  
self.initialize_texture(size, format, iformat, tdtype, ncomp, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2811, in initialize_texture  
tdtype, data)  
File "src\latebind.pyx", line 39, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src\wrapper.pyx", line 318, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src\wrapper.pyx", line 311, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src\errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1281,  
description = b'invalid value',  
baseOperation = glTexImage2D,  
pyArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
2048,  
118815,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
2048,  
118815,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArguments = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
2048,  
118815,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
)  
)  
  




OpenGL version: 3.3.0 NVIDIA 431.90
OpenGL renderer: GeForce RTX 2080 with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Acer
Model: Predator PT515-51
OS: Microsoft Windows 10 Home Single Language (Build 19042)
Memory: 17,098,264,576
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz"

[Eric Pettersen]

Reported by Lenye Diamini

[Tom Goddard]

This ChimeraX error was from showing contacts with distance labels and there were many thousands of contacts and distance labels. The distance labels get packed into a texture and the size requested for that texture of 2048 x 118815 exceeded the limits of the OpenGL maximum texture size by a lot (limit is probably 16384 on each axis). Current ChimeraX catches this problem and does not give an error although still has some limit of a few thousand labels. Reporter is using year old ChimeraX 0.93, current version is 1.1 (with 1.2 being released at the end of this month).