Can't open PDB file with exotic characters for output on Windows

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.1 (2020-09-09)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\Users\Dawei\OneDrive\Berkeley\Project\Prefoldin movie\Prefoldin
> assemble movie\gPFD_42mer_fullseq.pdb" format pdb

Summary of feedback from opening
C:\Users\Dawei\OneDrive\Berkeley\Project\Prefoldin movie\Prefoldin assemble
movie\gPFD_42mer_fullseq.pdb  
---  
warning | Ignored bad PDB record found on line 48052  
END  
  
Chain information for gPFD_42mer_fullseq.pdb  
---  
Chain | Description  
1.1/A 1.2/A 1.3/A 1.1/B 1.2/B 1.3/B 1.1/C 1.2/C 1.3/C 1.1/D 1.2/D 1.3/D 1.1/E
1.2/E 1.3/E 1.1/F 1.2/F 1.3/F 1.1/G 1.2/G 1.3/G 1.1/H 1.2/H 1.3/H 1.1/I 1.2/I
1.3/I 1.1/J 1.2/J 1.3/J 1.1/K 1.2/K 1.3/K 1.1/L 1.2/L 1.3/L 1.1/M 1.2/M 1.3/M
1.1/N 1.2/N 1.3/N | No description available  
  

> lighting soft

> lighting full

> lighting soft

> set bgColor white

> coulombic

> open 1CKM

Summary of feedback from opening 1CKM fetched from pdb  
---  
notes | Fetching compressed mmCIF 1ckm from
http://files.rcsb.org/download/1ckm.cif  
Fetching CCD GTP from http://ligand-expo.rcsb.org/reports/G/GTP/GTP.cif  
  
1ckm title:  
Structure of two different conformations of MRNA capping enzyme In complex
with GTP [more info...]  
  
Chain information for 1ckm #2  
---  
Chain | Description  
A B | MRNA capping enzyme  
  
Non-standard residues in 1ckm #2  
---  
GTP — guanosine-5'-triphosphate  
  
1ckm mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_and_software_defined_assembly  
3| software_defined_assembly  
4| software_defined_assembly  
5| software_defined_assembly  
  

> close all

> close all

> open 1CKM format mmcif fromDatabase pdb

1ckm title:  
Structure of two different conformations of MRNA capping enzyme In complex
with GTP [more info...]  
  
Chain information for 1ckm #1  
---  
Chain | Description  
A B | MRNA capping enzyme  
  
Non-standard residues in 1ckm #1  
---  
GTP — guanosine-5'-triphosphate  
  
1ckm mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_and_software_defined_assembly  
3| software_defined_assembly  
4| software_defined_assembly  
5| software_defined_assembly  
  

> select /A:11-327

2561 atoms, 2616 bonds, 317 residues, 1 model selected  

> select /B:11-327

2561 atoms, 2616 bonds, 317 residues, 1 model selected  

> lighting full

> lighting soft

> lighting full

> hide sel atoms

> hide sel atoms

> hide sel atoms

> hide sel cartoons

Drag select of 42 atoms, 34 bonds  

> hide sel atoms

> select up

5546 atoms, 5300 bonds, 996 residues, 1 model selected  

> select up

5546 atoms, 5300 bonds, 996 residues, 1 model selected  

> select clear

> select clear

> select clear

> select /A:1061@O

1 atom, 1 residue, 1 model selected  

> hide sel atoms

> style sel sphere

Changed 4 atom styles  

> select clear

Drag select of 110 atoms, 317 residues, 105 bonds  

> style sel sphere

Changed 2515 atom styles  

> show sel atoms

> style sel sphere

Changed 2515 atom styles  

> style sel ball

Changed 2515 atom styles  

> style sel stick

Changed 2515 atom styles  

> hide sel atoms

> select clear

> color byhetero

Drag select of 78 atoms, 317 residues, 71 bonds  

> color sel byhetero

> show sel surfaces

> transparency (#!1 & sel) 30

> transparency (#!1 & sel) 10

> transparency (#!1 & sel) 100

> transparency (#!1 & sel) 80

> select clear

> cartoon style xsection oval modeHelix default

> cartoon style coil xsection oval

> cartoon style xsection barbell modeHelix default

> cartoon style xsection oval modeHelix default

> cartoon style modeHelix tube sides 20

> cartoon style xsection oval modeHelix default

> cartoon style xsection rectangle modeHelix default

> ui tool show "Color Actions"

> color purple

> color orange

> color dark gray

> color dark gray

> color gray

> color dark gray

> color dim gray

> color dark gray

> color gray

> color light gray

> color gray

> color light gray

> transparency 80

> ui tool show "Color Actions"

> color cyan target c

> color lime target ac

> color royal blue target ac

> color medium blue target ac

> color blue target ac

> color blue target ac

> color slate gray target ac

> color cadet blue target ac

> color steel blue target ac

> color teal target ac

> color turquoise target ac

> color dodger blue target ac

> color medium spring green target ac

> color dark turquoise target ac

> color medium slate blue target ac

> color dark slate blue target ac

> color magenta target ac

> color deep pink target ac

> color peach puff target ac

> color navajo white target ac

> color moccasin target ac

> color bisque target ac

> color misty rose target ac

> color blanched almond target ac

> color papaya whip target ac

> color tan target ac

> color rosy brown target ac

> color dark gray target ac

> color rosy brown target ac

> color bychain

> color bychain

> close

> open 1CKM format mmcif fromDatabase pdb

1ckm title:  
Structure of two different conformations of MRNA capping enzyme In complex
with GTP [more info...]  
  
Chain information for 1ckm #1  
---  
Chain | Description  
A B | MRNA capping enzyme  
  
Non-standard residues in 1ckm #1  
---  
GTP — guanosine-5'-triphosphate  
  
1ckm mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_and_software_defined_assembly  
3| software_defined_assembly  
4| software_defined_assembly  
5| software_defined_assembly  
  

> select /B:11-327

2561 atoms, 2616 bonds, 317 residues, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

> select /B:11-327

2561 atoms, 2616 bonds, 317 residues, 1 model selected  

> select /B:11-327

2561 atoms, 2616 bonds, 317 residues, 1 model selected  

> select :GTP

64 atoms, 68 bonds, 2 residues, 1 model selected  
Drag select of 42 atoms, 2 residues, 34 bonds  
Drag select of 42 atoms, 34 bonds  
Drag select of 42 atoms, 34 bonds  

> select clear

Drag select of 42 atoms, 34 bonds  

> hide sel cartoons

> hide sel atoms

> select /A:1062@O

1 atom, 1 residue, 1 model selected  

> select /A:1061@O

1 atom, 1 residue, 1 model selected  

> hide sel atoms

> select /A:11-327

2561 atoms, 2616 bonds, 317 residues, 1 model selected  

> hide sel atoms

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

32 atoms, 34 bonds, 1 residue, 1 model selected  

> style sel sphere

Changed 32 atom styles  

> style sel ball

Changed 32 atom styles  

> select clear

> select up

83 atoms, 83 bonds, 9 residues, 1 model selected  

> select up

2757 atoms, 2650 bonds, 482 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel medium slate blue target c

> color sel rebecca purple target c

> color sel papaya whip target c

> color sel medium purple target c

> color sel orange red target c

> color sel crimson target c

> color sel dark red target c

> color sel tomato target c

> color sel chocolate target c

> color sel saddle brown target c

> color sel coral target c

> color sel indian red target c

> color sel orange target c

> color sel dark orange target c

> color sel green yellow target c

> color sel crimson target c

> color sel medium spring green target c

> color sel dark turquoise target c

> color sel medium sea green target c

> color sel forest green target c

> color sel spring green target c

> color sel lawn green target c

> color sel chartreuse target c

> preset cartoons/nucleotides ribbons/slabs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> preset cartoons/nucleotides cylinders/stubs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides stubs

  

> preset "initial styles" "original look"

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "initial styles" sticks

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "initial styles" cartoon

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "initial styles" "space-filling (single color)"

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "molecular surfaces" "ghostly white"

Changed 5482 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color white targ s trans 80

  

> preset "molecular surfaces" "atomic coloring (transparent)"

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color fromatoms targ s trans 70

  

> preset "initial styles" cartoon

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "molecular surfaces" "atomic coloring (transparent)"

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color fromatoms targ s trans 70

  

> preset "overall look" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> close

> open 1CKM format mmcif fromDatabase pdb

1ckm title:  
Structure of two different conformations of MRNA capping enzyme In complex
with GTP [more info...]  
  
Chain information for 1ckm #1  
---  
Chain | Description  
A B | MRNA capping enzyme  
  
Non-standard residues in 1ckm #1  
---  
GTP — guanosine-5'-triphosphate  
  
1ckm mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_and_software_defined_assembly  
3| software_defined_assembly  
4| software_defined_assembly  
5| software_defined_assembly  
  

> show target m

> show target m

> show target m

> close

> open 1CKM format mmcif fromDatabase pdb

1ckm title:  
Structure of two different conformations of MRNA capping enzyme In complex
with GTP [more info...]  
  
Chain information for 1ckm #1  
---  
Chain | Description  
A B | MRNA capping enzyme  
  
Non-standard residues in 1ckm #1  
---  
GTP — guanosine-5'-triphosphate  
  
1ckm mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_and_software_defined_assembly  
3| software_defined_assembly  
4| software_defined_assembly  
5| software_defined_assembly  
  

> select /B:11-327

2561 atoms, 2616 bonds, 317 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

Drag select of 40 atoms, 34 bonds  
Drag select of 42 atoms, 34 bonds  
Drag select of 42 atoms, 34 bonds  

> delete atoms sel

> delete bonds sel

Drag select of 2 atoms, 2 residues  

> select HOH

Expected an objects specifier or a keyword  

> select all HOH

Expected a keyword  

> select clear

> select /Al HOH

Expected a keyword  

> select /A HOH

Expected a keyword  

> select HOH /A

Expected an objects specifier or a keyword  
Drag select of 2 atoms  

> delete atoms sel

> delete bonds sel

> select up

35 atoms, 35 bonds, 4 residues, 1 model selected  

> select up

2757 atoms, 2650 bonds, 482 residues, 1 model selected  

> hide sel atoms

> show sel atoms

> show sel atoms

> select clear

> select up

2757 atoms, 2650 bonds, 482 residues, 1 model selected  

> select clear

> select up

32 atoms, 34 bonds, 1 residue, 1 model selected  

> select ~sel

2911 atoms, 2616 bonds, 667 residues, 1 model selected  

> hide sel atoms

> select clear

> lighting full

> lighting soft

> lighting full

> preset "initial styles" cartoon

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> ui tool show "Color Actions"

> color yellow target c

> color gold target c

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

32 atoms, 34 bonds, 1 residue, 1 model selected  

> select ~sel

2911 atoms, 2616 bonds, 667 residues, 1 model selected  

> hide sel atoms

> select clear

> select up

39 atoms, 38 bonds, 5 residues, 1 model selected  

> select up

2757 atoms, 2650 bonds, 482 residues, 1 model selected  

> select clear

> color sel chartreuse target c

> color sel chartreuse target c

> select up

13 atoms, 11 bonds, 2 residues, 1 model selected  

> select up

43 atoms, 44 bonds, 2 residues, 1 model selected  

> select ~sel

2900 atoms, 2606 bonds, 666 residues, 1 model selected  

> color sel indian red target c

> color sel gold target c

> color sel dark salmon target c

> color sel dark salmon target c

> color sel salmon target c

> color sel dark khaki target c

> color sel steel blue target c

> color sel teal target c

> color sel royal blue target c

> color sel medium slate blue target c

> color sel slate blue target c

> color sel dark slate blue target c

> color sel dark slate blue target c

> select clear

> color sel dark slate blue target c

> select clear

> select up

113 atoms, 113 bonds, 13 residues, 1 model selected  

> select up

2757 atoms, 2650 bonds, 482 residues, 1 model selected  

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

32 atoms, 34 bonds, 1 residue, 1 model selected  

> select ~sel

2911 atoms, 2616 bonds, 667 residues, 1 model selected  

> color sel orchid target c

> color sel navy target c

> color sel slate blue target c

> color sel medium slate blue target c

> color sel #8cc591ff

> surface sel

> ui tool show "Color Actions"

> transparency (#!1 & sel) 70

> select clear

> transparency 80

> select clear

> surface style mesh

> surface style solid

> surface style dot

> surface style solid

> lighting full

> lighting soft

> lighting full

> lighting simple

> lighting flat

> lighting full

> lighting flat

> lighting soft

> lighting soft

> lighting soft

> lighting soft

> lighting simple

> open http://rbvi.ucsf.edu/chimerax/docs/user/preferences.html#startup

Opened http://rbvi.ucsf.edu/chimerax/docs/user/preferences.html#startup  

> save C:\ProgramData\ChimeraX\image1.png supersample 3

> open http://rbvi.ucsf.edu/chimerax/docs/user/preferences.html#startup format
> "web fetch" fromDatabase http

Opened http://rbvi.ucsf.edu/chimerax/docs/user/preferences.html#startup  

> save C:/Users/Dawei/OneDrive/Desktop/1CKM.png width 1341 height 954
> supersample 4

> close session

> open 4CKB

Summary of feedback from opening 4CKB fetched from pdb  
---  
warning | Unable to infer polymer connectivity due to unspecified label_seq_id
for residue "SAH" near line 20155  
notes | Fetching compressed mmCIF 4ckb from
http://files.rcsb.org/download/4ckb.cif  
Fetching CCD SAH from http://ligand-expo.rcsb.org/reports/S/SAH/SAH.cif  
  
4ckb title:  
Vaccinia virus capping enzyme complexed with GTP and SAH [more info...]  
  
Chain information for 4ckb #1  
---  
Chain | Description  
A D | MRNA-capping enzyme catalytic subunit  
B E | MRNA-capping enzyme regulatory subunit  
  
Non-standard residues in 4ckb #1  
---  
GTP — guanosine-5'-triphosphate  
  
4ckb mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| author_and_software_defined_assembly  
  

> select /A:1-844

6536 atoms, 6664 bonds, 5 pseudobonds, 809 residues, 2 models selected  

> select /D:1-844

6578 atoms, 6709 bonds, 4 pseudobonds, 814 residues, 2 models selected  

> select /B:1-287

2320 atoms, 2365 bonds, 1 pseudobond, 284 residues, 2 models selected  

> select /E:1-287

2320 atoms, 2365 bonds, 1 pseudobond, 284 residues, 2 models selected  

> select /B:1-287

2320 atoms, 2365 bonds, 1 pseudobond, 284 residues, 2 models selected  

> select /A:1-844

6536 atoms, 6664 bonds, 5 pseudobonds, 809 residues, 2 models selected  

> select /A:1-844

6536 atoms, 6664 bonds, 5 pseudobonds, 809 residues, 2 models selected  

> select /A:1-844

6536 atoms, 6664 bonds, 5 pseudobonds, 809 residues, 2 models selected  

> select /A:1-844

6536 atoms, 6664 bonds, 5 pseudobonds, 809 residues, 2 models selected  

> select /D:1-844

6578 atoms, 6709 bonds, 4 pseudobonds, 814 residues, 2 models selected  
Drag select of 91 atoms, 920 residues, 5 pseudobonds, 85 bonds  
Drag select of 8 atoms, 369 residues, 1 pseudobonds, 7 bonds  

> select /D:1-844

6578 atoms, 6709 bonds, 4 pseudobonds, 814 residues, 2 models selected  

> delete atoms (#!1 & sel)

> delete bonds (#!1 & sel)

> select /E:1-287

2320 atoms, 2365 bonds, 1 pseudobond, 284 residues, 2 models selected  
Drag select of 59 atoms, 284 residues, 1 pseudobonds, 62 bonds  
Drag select of 59 atoms, 284 residues, 1 pseudobonds, 62 bonds  

> select clear

Drag select of 59 atoms, 284 residues, 1 pseudobonds, 62 bonds  

> select clear

Drag select of 59 atoms, 284 residues, 1 pseudobonds, 62 bonds  

> select clear

Drag select of 8 atoms, 284 residues, 1 pseudobonds, 7 bonds  

> select clear

> select clear

> select clear

Drag select of 47 atoms, 284 residues, 1 pseudobonds, 49 bonds  
Drag select of 59 atoms, 284 residues, 1 pseudobonds, 62 bonds  

> delete atoms (#!1 & sel)

> delete bonds (#!1 & sel)

> select clear

> select /A:544

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select clear

> select clear

> select clear

> select clear

> preset "initial styles" cartoon

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> select all

8906 atoms, 9057 bonds, 6 pseudobonds, 1118 residues, 2 models selected  

> preset "initial styles" "original look"

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "initial styles" cartoon

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "overall look" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> select clear

> select /A:1-844

6536 atoms, 6664 bonds, 5 pseudobonds, 809 residues, 2 models selected  

> color sel cornflower blue target cs

> select /E:1-287

Nothing selected  

> select /E:1-287

Nothing selected  

> select /B:1-287

2320 atoms, 2365 bonds, 1 pseudobond, 284 residues, 2 models selected  

> color sel hot pink target cs

> select clear

> select /B:196

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

54 atoms, 53 bonds, 8 residues, 1 model selected  

> select up

2324 atoms, 2365 bonds, 288 residues, 1 model selected  

> color sel #cde4f7ff

> color sel #787878ff

> color sel #ccccccff

> color sel #ccbea3ff

> color sel #ccccccff

> color sel #f0f0f0ff

> color sel #c8aab5ff

> color sel #a4a2c8ff

> color sel #a2b3c8ff

> color sel #a2b6c8ff

> color sel #c8b9c1ff

> color sel #ffffffff

> color sel #f0f0f0ff

> color sel #a4a4a4ff

> color sel #6a6a6aff

> color sel #686868ff

> color sel #696969ff

> color sel #434343ff

> color sel #2a2a2aff

> color sel #f0f0f0ff

> color sel #8ec8c4ff

> color sel #85c8bdff

> color sel #7dc8adff

> color sel #7dc8acff

> color sel #7fc87aff

> color sel #c1c873ff

> color sel #f0f0f0ff

> color sel #c88274ff

> color sel #a3c3c8ff

> color sel #f0f0f0ff

> color sel #ffffffff

> color sel #f0f0f0ff

> color sel #0f0f0fff

> color sel #8cc591ff

> select clear

No Surface models open  
Drag select of 91 atoms, 1093 residues, 6 pseudobonds, 85 bonds  

> select clear

> select up

33 atoms, 33 bonds, 4 residues, 1 model selected  

> select up

2324 atoms, 2365 bonds, 288 residues, 1 model selected  

> surface sel

Drag select of 4ckb_B SES surface, 91 atoms, 1093 residues, 6 pseudobonds, 85
bonds  

> surface (#!1 & sel)

> transparency (#!1 & sel) 90

> select clear

> select clear

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

12 atoms, 12 bonds, 1 residue, 2 models selected  

> select clear

Drag select of 4ckb_B SES surface, 4ckb_A SES surface, 671290 of 696934
triangles, 91 atoms, 1087 residues, 6 pseudobonds, 85 bonds  
Drag select of 4ckb_B SES surface, 4ckb_A SES surface, 688512 of 696934
triangles, 91 atoms, 1093 residues, 6 pseudobonds, 85 bonds  
Drag select of 4ckb_B SES surface, 4ckb_A SES surface, 689529 of 696934
triangles, 91 atoms, 1093 residues, 6 pseudobonds, 85 bonds  

> select clear

Drag select of 4ckb_B SES surface, 4ckb_A SES surface, 689529 of 696934
triangles, 91 atoms, 1093 residues, 6 pseudobonds, 85 bonds  

> surface hidePatches (#!1 & sel)

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

26 atoms, 28 bonds, 1 residue, 1 model selected  

> select ~sel

8880 atoms, 9029 bonds, 6 pseudobonds, 1117 residues, 2 models selected  

> hide (#!1 & sel) target a

> select clear

> surface

> transparency 90

> save "C:/Users/Dawei/OneDrive/Proposal/国内/mRNA Cap/4CKB.png" width 1689
> height 954 supersample 4

> save "C:/Users/Dawei/OneDrive/Proposal/国内/mRNA Cap/4CKB.pdb" displayedOnly
> true relModel #1

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 162, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 363, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1273, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 38, in run_provider  
providers.run_provider(session, name)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 45, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 27, in _file_save  
show_save_file_dialog(session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save  
mgr).save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\\__init__.py", line 71, in save  
pdb.save_pdb(session, path, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 119, in save_pdb  
(serial_numbering == "h36"), polymeric_res_names)  
OSError: Unable to open file 'C:/Users/Dawei/OneDrive/Proposal/国内/mRNA
Cap/4CKB.pdb' for writing  
  
OSError: Unable to open file 'C:/Users/Dawei/OneDrive/Proposal/国内/mRNA
Cap/4CKB.pdb' for writing  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 119, in save_pdb  
(serial_numbering == "h36"), polymeric_res_names)  
  
See log for complete Python traceback.  
  

> save "C:/Users/Dawei/OneDrive/Proposal/国内/mRNA Cap/4CKB.pdb" relModel #1

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 162, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 363, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1273, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 38, in run_provider  
providers.run_provider(session, name)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 45, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 27, in _file_save  
show_save_file_dialog(session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save  
mgr).save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\\__init__.py", line 71, in save  
pdb.save_pdb(session, path, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 119, in save_pdb  
(serial_numbering == "h36"), polymeric_res_names)  
OSError: Unable to open file 'C:/Users/Dawei/OneDrive/Proposal/国内/mRNA
Cap/4CKB.pdb' for writing  
  
OSError: Unable to open file 'C:/Users/Dawei/OneDrive/Proposal/国内/mRNA
Cap/4CKB.pdb' for writing  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 119, in save_pdb  
(serial_numbering == "h36"), polymeric_res_names)  
  
See log for complete Python traceback.  
  

> save "C:/Users/Dawei/OneDrive/Proposal/国内/mRNA Cap/4CKB.pdb" serialNumbering
> amber

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 162, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 363, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1273, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 38, in run_provider  
providers.run_provider(session, name)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 45, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 27, in _file_save  
show_save_file_dialog(session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save  
mgr).save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\\__init__.py", line 71, in save  
pdb.save_pdb(session, path, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 119, in save_pdb  
(serial_numbering == "h36"), polymeric_res_names)  
OSError: Unable to open file 'C:/Users/Dawei/OneDrive/Proposal/国内/mRNA
Cap/4CKB.pdb' for writing  
  
OSError: Unable to open file 'C:/Users/Dawei/OneDrive/Proposal/国内/mRNA
Cap/4CKB.pdb' for writing  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 119, in save_pdb  
(serial_numbering == "h36"), polymeric_res_names)  
  
See log for complete Python traceback.  
  

> save "C:/Users/Dawei/OneDrive/Proposal/国内/mRNA Cap/4CKB.pdb"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 162, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 363, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1273, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 38, in run_provider  
providers.run_provider(session, name)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 45, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 27, in _file_save  
show_save_file_dialog(session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save  
mgr).save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\\__init__.py", line 71, in save  
pdb.save_pdb(session, path, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 119, in save_pdb  
(serial_numbering == "h36"), polymeric_res_names)  
OSError: Unable to open file 'C:/Users/Dawei/OneDrive/Proposal/国内/mRNA
Cap/4CKB.pdb' for writing  
  
OSError: Unable to open file 'C:/Users/Dawei/OneDrive/Proposal/国内/mRNA
Cap/4CKB.pdb' for writing  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 119, in save_pdb  
(serial_numbering == "h36"), polymeric_res_names)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.13497 Core Profile Forward-Compatible Context 23.20.806.256
OpenGL renderer: AMD Radeon(TM) R5 240
OpenGL vendor: ATI Technologies Inc.
Manufacturer: Dell Inc.
Model: OptiPlex 7020
OS: Microsoft Windows 10 Pro (Build 19042)
Memory: 17,118,662,656
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-4790 CPU @ 3.60GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.8.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    gdcm: 2.8.8
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5+mkl
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pywin32: 228
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    tornado: 6.0.4
    traitlets: 5.0.4
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2
    WMI: 1.5.1

[pett]

Used various wchar_t routines on Windows.