ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-3.10.0-1160.6.1.el7.x86_64-x86_64-with-centos-7.7.1908-Core
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.1 (2020-09-09)  
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How to cite UCSF ChimeraX  
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sunch@ohsu.edu is subscribed to the ChimeraX announcements list  

> open /home/sunch/Downloads/cryosparc_P174_J77_006_volume_map_sharp.mrc

Opened cryosparc_P174_J77_006_volume_map_sharp.mrc, grid size 256,256,256,
pixel 1.14, shown at level 0.489, step 1, values float32  

> volume #1 level 1.152

> toolshed show

Downloading bundle ChimeraX_ISOLDE-1.1.0-cp37-cp37m-linux_x86_64.whl  
Successfully installed ChimeraX-Clipper-0.15.0 ChimeraX-ISOLDE-1.1.0  
Installed ChimeraX-Clipper (0.15.0)  
Installed ChimeraX-ISOLDE (1.1.0)  

> ui tool show "Conference Call"

> ui tool show ISOLDE

> set selectionWidth 4

Cached rama8000-cispro data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rama8000-transpro data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rama8000-gly-sym data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rama8000-prepro-noGP data not found. Regenerating from text file. This
is normal if running ISOLDE for the first time  
Cached rama8000-ileval-nopreP data not found. Regenerating from text file.
This is normal if running ISOLDE for the first time  
Cached rama8000-general-noGPIVpreP data not found. Regenerating from text
file. This is normal if running ISOLDE for the first time  
Forcefield cache not found or out of date. Regenerating from ffXML files. This
is normal if running ISOLDE for the first time, or after upgrading OpenMM.  
Done loading forcefield  

> isolde demo cryo_em_intro modelOnly true startIsolde false

6out.pdb title:  
Asymmetric focused reconstruction of human norovirus gi.1 norwalk strain VLP
asymmetric unit In T=3 symmetry [more info...]  
  
Chain information for 6out.pdb #2  
---  
Chain | Description  
A B C | capsid protein VP1  
  
6out.pdb title:  
Asymmetric focused reconstruction of human norovirus gi.1 norwalk strain VLP
asymmetric unit In T=3 symmetry [more info...]  
  
Chain information for 6out.pdb  
---  
Chain | Description  
2.2/A 2.2/B 2.2/C | capsid protein VP1  
  
Cached rota8000-val data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-leu data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-ile data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-pro data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-phe data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-tyr data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-trp data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-ser data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-thr data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-cys data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-met data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-lys data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-his data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-arg data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-asp data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-asn data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-gln data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-glu data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Loaded cryo-EM demo: PDB ID 6out, EMDB ID 20205  

> close #1

> view

> open 20205 fromDatabase emdb

Summary of feedback from opening 20205 fetched from emdb  
---  
note | Fetching compressed map 20205 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-20205/map/emd_20205.map.gz  
  
Opened emd_20205.map, grid size 98,112,104, pixel 1.07,1.07,1.07, shown at
level 0.287, step 1, values float32  

> clipper associate #2 toModel #1

Invalid "toModel" argument: Must specify 1 structure, got 0 for "#1"  

> clipper associate #1 toModel #2

> isolde start

> set selectionWidth 4

Done loading forcefield  

> set bgColor white

> transparency 50

> transparency 0

> transparency 50

> transparency 0

> transparency 50

> transparency 0

> transparency 50

> transparency 0

> transparency 50

> transparency 0

> volume style image

> volume style image

> volume style mesh

> volume style surface

> transparency 50

> volume showOutlineBox true

> volume showOutlineBox false

> addh

Summary of feedback from adding hydrogens to 6out.pdb #2.2  
---  
notes | Termini for 6out.pdb (#2.2) chain A determined from SEQRES records  
Termini for 6out.pdb (#2.2) chain B determined from SEQRES records  
Termini for 6out.pdb (#2.2) chain C determined from SEQRES records  
Chain-initial residues that are actual N termini: /B THR 9  
Chain-initial residues that are not actual N termini: /A ASP 29, /C ASP 29  
Chain-final residues that are actual C termini: /A SER 520  
Chain-final residues that are not actual C termini: /B ALA 519, /C ALA 519  
Missing OXT added to C-terminal residue /A SER 520  
1438 hydrogen bonds  
Adding 'H' to /A ASP 29  
Adding 'H' to /C ASP 29  
/B ALA 519 is not terminus, removing H atom from 'C'  
/C ALA 519 is not terminus, removing H atom from 'C'  
11439 hydrogens added  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  

> hide HC

Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  

> isolde restrain ligands #1

Must specify at least one atomic structure!  

> isolde restrain ligands #2

> select #2

22945 atoms, 23062 bonds, 1720 residues, 15 models selected  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  

> isolde sim start sel

Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 1144, in _changes_done_cb  
self._update_iffy_rota_list()  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "/home/sunch/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2370, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 440.64
OpenGL renderer: GeForce GTX 1070 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Gigabyte Technology Co., Ltd.
Model: Z390 I AORUS PRO WIFI
OS: CentOS Linux 7 Core
Architecture: 64bit ELF
CPU: 8 Intel(R) Core(TM) i7-9700K CPU @ 3.60GHz
Cache Size: 12288 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:            31G         15G        1.1G        3.4G         14G         12G
	Swap:           15G        975M         14G

Graphics:
	01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP104 [GeForce GTX 1070 Ti] [10de:1b82] (rev a1)	
	Subsystem: eVga.com. Corp. Device [3842:5671]	
	Kernel driver in use: nvidia
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.8.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-Clipper: 0.15.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.0
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-ISOLDE: 1.1.0
    ChimeraX-Label: 1.0
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    distro: 1.5.0
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    ptyprocess: 0.6.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    tornado: 6.0.4
    traitlets: 5.0.4
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2

[Tristan Croll]

Looks like I've forgotten to remove a callback on closing the ISOLDE panel...

[Tristan Croll]

Fixed by new GUI.