![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Feb 24, 2023:
- 11:19 PM Ticket #8565 (Crash in event loop after showing many pseudobonds) created by
- […]
- 9:11 PM Ticket #8564 (installation issue) created by
- […]
- 5:30 PM Ticket #8563 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) created by
- […]
- 12:01 PM Ticket #8557 (Reading AlphaFold JSON as MOLE; shader syntax error) closed by
- duplicate: The graphics error is a driver problem. The error opening AlphaFold …
- 11:57 AM Ticket #8556 (Crash in molarray.LookupTable._delete_table) closed by
- can't reproduce: ChimeraX crashed trying to release some memory. This was probably …
- 11:55 AM Ticket #8562 (QQuickWidget: Failed to make context current when creating FBO) created by
- […]
- 11:35 AM Ticket #8553 (AddH problem) closed by
- duplicate: Hi Shana, This is the same issue, you either need to delete the …
- 11:29 AM Ticket #8552 (AddH problem) closed by
- fixed: Hi Shana, You're not running addh, you are running addcharge. Do you …
- 11:28 AM Ticket #8555 (glClear: invalid operation) closed by
- nonchimerax: This error at ChimeraX startup indicates that your graphics driver is …
- 11:00 AM Ticket #8539 (Download DICOM tool: need to segregate by collection when drilling ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/b73def018082fb884b61013a2c9443 …
- 10:25 AM Ticket #8561 (Session restore: invalid load key) closed by
- duplicate
- 10:22 AM Ticket #8560 (QWindowsWindow:setDarkBorderToWindow: Unable to set dark window border) closed by
- duplicate: Duplicate of #8541; adding Tristan to recipient list for that ticket
- 10:21 AM Ticket #8437 (QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border) closed by
- duplicate: Duplicate of #8541
- 9:59 AM Ticket #8558 (Crash showing Rapid Access at startup(?)) closed by
- can't reproduce: Linux; the Python traceback implies the crash happened at startup …
- 8:24 AM Ticket #8561 (Session restore: invalid load key) created by
- […]
- 6:36 AM Ticket #8560 (QWindowsWindow:setDarkBorderToWindow: Unable to set dark window border) created by
- […]
- 6:23 AM Ticket #8559 (Difficult morphing scenario) created by
- […] 8em7_8em4_rebuilt.zip
- 5:56 AM Ticket #8558 (Crash showing Rapid Access at startup(?)) created by
- […]
- 3:57 AM Ticket #8557 (Reading AlphaFold JSON as MOLE; shader syntax error) created by
- […]
- 3:52 AM Ticket #8556 (Crash in molarray.LookupTable._delete_table) created by
- […]
Feb 23, 2023:
- 11:04 PM Ticket #8555 (glClear: invalid operation) created by
- […]
- 10:32 PM Ticket #8554 (MatchMaker: wrapped C/C++ object of type QPushButton has been deleted) created by
- […]
- 6:44 PM Ticket #8547 (Window black) closed by
- nonchimerax: ChimeraX and the Qt window toolkit it uses cannot display correctly …
- 3:34 PM Ticket #8503 (DICOM: minor text change request on DICOM Browser and Download DICOM tools) closed by
- fixed: OK, …
- 11:37 AM Ticket #8553 (AddH problem) created by
- […] Keppra21MBO-webina_out.pdbqt
- 11:33 AM Ticket #8552 (AddH problem) created by
- […] 1EVE-Docking-webina_out.pdbqt
- 10:57 AM Ticket #8536 (Atomic/session memory leak) closed by
- fixed: Was under the misapprehension that appending to a list works the same …
- 9:05 AM Ticket #8548 (ISOLDE: Unparameterised residue detected) closed by
- duplicate: Ancient - ChimeraX 1.0.
- 8:58 AM Ticket #8550 (Unknown crash at startup) closed by
- can't reproduce
- 8:40 AM Ticket #8546 (Crash in event loop) closed by
- can't reproduce
- 8:37 AM Ticket #8545 (Restore new session in old ChimeraX) closed by
- limitation
- 8:30 AM Ticket #8543 (Crash destroying QGridLayout) closed by
- can't reproduce: XMAS was installed
- 7:40 AM Ticket #8551 (Volume Viewer does not update for 'rename') created by
- […]
- 4:55 AM Ticket #8550 (Unknown crash at startup) created by
- […]
- 2:27 AM Ticket #8549 (Various surface errors) created by
- […]
Feb 22, 2023:
- 6:55 PM Ticket #8548 (ISOLDE: Unparameterised residue detected) created by
- […]
- 6:36 PM Ticket #8547 (Window black) created by
- […]
- 4:39 PM Ticket #8534 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: Aha! Thanks for that info. Displaying 3D graphics (OpenGL) using a …
- 3:06 PM Ticket #8546 (Crash in event loop) created by
- […]
- 2:12 PM Ticket #8545 (Restore new session in old ChimeraX) created by
- […]
- 12:24 PM Ticket #8544 (ISOLDE: after session restore 'mgr' is None) created by
- […]
- 10:51 AM Ticket #8543 (Crash destroying QGridLayout) created by
- […]
- 10:32 AM Ticket #8542 (Add molmap option to specify grid size) created by
- Would be convenient of the molmap command could specify a grid size …
- 9:31 AM Ticket #8538 (Add Charges: Could not come up with unique atom name in mega-residue) closed by
- duplicate
Feb 21, 2023:
- 9:13 PM Ticket #8540 (Remove CONFINCLUDEDIR, CONFINCLUDEPY, INCLUDEPY, INCLUDEDIR, etc from ...) closed by
- fixed: I bumped setuptools after clearing those values from _sysconfigdata.
- 7:01 PM Ticket #8541 (QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border) created by
- […]
- 5:19 PM Ticket #8540 (Remove CONFINCLUDEDIR, CONFINCLUDEPY, INCLUDEPY, INCLUDEDIR, etc from ...) created by
- We pinned setuptools to version 65.1.1 to avoid a change in distutils …
- 5:01 PM Ticket #8389 (Implement a NifTI File Reader) closed by
- fixed: Enabled the NifTI reader for tomorrow's (02/22/23) daily build.
- 4:47 PM Ticket #8503 (DICOM: minor text change request on DICOM Browser and Download DICOM tools) reopened by
- Not quite done. Although both initial tool dialogs (DICOM Browser, …
- 4:12 PM Ticket #8539 (Download DICOM tool: need to segregate by collection when drilling ...) created by
- Need to segregate studies by collection (if drilling down from >1 …
- 2:53 PM Ticket #8538 (Add Charges: Could not come up with unique atom name in mega-residue) created by
- […]
- 2:33 PM Ticket #8532 (Region past end of alignment) closed by
- fixed: Ensure that created regions (e.g. SCF coloring) don't extend past ends …
- 12:25 PM Ticket #8523 (Cruft in API reference) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/248109bd8f8231c946020d0b0c85f0 …
- 10:52 AM Ticket #8535 (Crash creating HTML profile) closed by
- duplicate
- 10:34 AM Ticket #8527 (Error in glGetFramebufferAttachmentParameteriv) closed by
- nonchimerax: Broken OpenGL graphics driver. Also using Windows 7 which ChimeraX …
- 10:30 AM Ticket #8520 (View matrix issue) closed by
- not a bug: Glad we figured it out. I made a request to add a camera command …
- 10:29 AM Ticket #8537 (Add a camera command option to set ortho camera field width) created by
- In ticket #8520 the problem was that the view matrix command does not …
- 10:26 AM Ticket #8524 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: There are a variety of Qt bug reports about this "failed to initialize …
- 10:11 AM Ticket #8533 (Issue opening pdb files from ZDOCK) closed by
- duplicate: Hi Shawn, The ZDOCK "PDB" file does not conform to the PDB standard …
- 9:12 AM Ticket #8529 (Crash in glGetFramebufferAttachmentParameteriv) closed by
- duplicate
- 9:11 AM Ticket #8528 (Crash in glGetFramebufferAttachmentParameteriv) closed by
- duplicate
- 9:06 AM Ticket #8526 (Crash clearing aniso_u6) closed by
- duplicate: ARM, and running directly from .dmg (though we know the latter isn't …
- 8:06 AM Ticket #8536 (Atomic/session memory leak) created by
- […]
- 4:44 AM Ticket #8535 (Crash creating HTML profile) created by
- […]
- 1:13 AM Ticket #8534 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Feb 20, 2023:
- 2:58 PM Ticket #8533 (Issue opening pdb files from ZDOCK) created by
- […] [[Image(...)]] complex.1.pdb
- 6:43 AM Ticket #8532 (Region past end of alignment) created by
- […]
- 6:40 AM Ticket #8531 (Crash asking for registration after opening old session) created by
- […]
- 4:14 AM Ticket #8530 (Crash clearing aniso_u6) created by
- […]
Feb 19, 2023:
- 10:03 PM Ticket #8529 (Crash in glGetFramebufferAttachmentParameteriv) created by
- […]
- 9:49 PM Ticket #8528 (Crash in glGetFramebufferAttachmentParameteriv) created by
- […]
- 9:21 PM Ticket #8527 (Error in glGetFramebufferAttachmentParameteriv) created by
- […]
Feb 18, 2023:
- 5:06 PM Ticket #8526 (Crash clearing aniso_u6) created by
- […]
- 3:20 AM Ticket #8525 (Session restore: Compressed file ended before the end-of-stream marker ...) created by
- […]
Feb 17, 2023:
- 7:59 PM Ticket #8524 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:30 PM Ticket #8523 (Cruft in API reference) created by
- The listings in the Programmer's Guide / API Reference / Python …
- 11:24 AM Dev2022-2-20 edited by
- (diff)
- 11:04 AM Ticket #8519 (Crash coloring ribbon) closed by
- can't reproduce: I have never seen a report of ChimeraX crashing on ribbon coloring. …
- 10:41 AM Ticket #8521 (PermissionError saving command history) closed by
- duplicate: Various fixes have been applied since then.
- 10:15 AM Ticket #8522 (Crash opening mmCIF on Linux) created by
- […] I53-50_marshmallow_half_shell_trimer_centered.cif
- 9:55 AM Ticket #8521 (PermissionError saving command history) created by
- […]
- 8:01 AM Ticket #8520 (View matrix issue) created by
- […]
- 1:26 AM Ticket #8519 (Crash coloring ribbon) created by
- […]
Feb 16, 2023:
- 5:48 PM Ticket #7904 (RCSB biological unit: PDBx/mmCIF styling lost) closed by
- fixed: Done for #8484.
- 5:47 PM Ticket #8484 ("styling lost" in hand-edited mmCIF) closed by
- fixed: Added fallback path to read the mmCIF file without PDBx/mmCIF styling …
- 4:32 PM Ticket #4479 (Read small-molecule CIF files) closed by
- fixed: Any further work on small molecule CIF files should be on a new ticket.
- 4:26 PM Ticket #8506 (Saving GLTF of mesh surface actually saves a filled surface) closed by
- fixed: Done. GLTF save and load now handle mesh and dot surfaces.
- 4:17 PM Ticket #4342 (mmCIF format-compliance issues) closed by
- fixed: The molecular data in the session file was unexpected by the mmCIF …
- 3:50 PM Ticket #8518 (Implement a NRRD file reader) created by
- Part of the NIAID contract
- 3:49 PM Ticket #8517 (Some TCIA dicoms open at an angle that makes them look invisible) created by
- Sometimes when a DICOM file is downloaded from TCIA and opened, …
- 3:09 PM Ticket #8511 (Make GLTF save volume image rendering) closed by
- fixed: Done. It can be pretty slow to save a GLTF with a volume image I …
- 1:54 PM 2023-2-16 edited by
- (diff)
- 1:21 PM 2023-2-16 edited by
- (diff)
- 1:21 PM 2023-2-16 edited by
- (diff)
- 12:26 PM Ticket #8515 (Map fit: Tried to get the position of deleted drawing) closed by
- fixed: Fixed. Added error message saying deleted fit structures cannot be saved.
- 12:12 PM Ticket #8516 (glClear: invalid framebuffer operation) closed by
- nonchimerax: Probably related to removing a second display […]
- 10:29 AM Ticket #8514 (Map not visible when Side View showing) closed by
- can't reproduce: This works fine for me using ChimeraX 1.5 on an Intel Mac with macOS …
- 9:59 AM Ticket #8513 (self.structure is None) closed by
- duplicate: From 0.91!
- 6:54 AM Ticket #8516 (glClear: invalid framebuffer operation) created by
- […]
- 5:03 AM Ticket #8515 (Map fit: Tried to get the position of deleted drawing) created by
- […]
- 4:13 AM Ticket #8514 (Map not visible when Side View showing) created by
- […]
Feb 15, 2023:
- 11:15 PM Ticket #8513 (self.structure is None) created by
- […]
- 8:02 PM Ticket #8512 (Crash in msgpack_deserialize) created by
- […]
- 1:51 PM Ticket #8510 (Crash reading 6V9V) closed by
- can't reproduce: This might be a hardware bug. See …
- 1:23 PM Ticket #8511 (Make GLTF save volume image rendering) created by
- Would like the GLTF writer to save volume image rendering as a stack …
- 1:13 PM Ticket #8507 (Saving a GLTF file of a transparent surface shows as opaque in BabylonJS) closed by
- fixed: Fixed. Made gltf writer set material alphaMode to blend if drawing is …
- 12:50 PM Ticket #8510 (Crash reading 6V9V) created by
- […]
- 12:41 PM Ticket #8509 (Write GLTF files directly to Quest 2 headset) created by
- I'd like to have ChimeraX able to write GLTF files directly to a Quest …
- 12:24 PM Ticket #8503 (DICOM: minor text change request on DICOM Browser and Download DICOM tools) closed by
- fixed: OK, I got …
- 10:58 AM Ticket #8508 (Crash in removeDockWidget) created by
- […]
- 10:40 AM Ticket #8507 (Saving a GLTF file of a transparent surface shows as opaque in BabylonJS) created by
- […]
- 10:31 AM Ticket #8506 (Saving GLTF of mesh surface actually saves a filled surface) created by
- […]
- 9:34 AM Ticket #8505 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:33 AM Ticket #8504 (Crash in event loop) closed by
- can't reproduce
- 8:05 AM Ticket #8505 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Feb 14, 2023:
- 6:27 PM Ticket #8504 (Crash in event loop) created by
- […]
- 4:14 PM Ticket #8503 (DICOM: minor text change request on DICOM Browser and Download DICOM tools) created by
- To be consistent with the Blast Protein results dialog (hobgoblin of …
- 3:57 PM Ticket #8502 (Add metallic and roughness options for GLTF output) closed by
- fixed: Done. The option names are metallicFactor and roughnessFactor and the …
- 3:53 PM Ticket #8502 (Add metallic and roughness options for GLTF output) created by
- […]
- 2:26 PM Ticket #8476 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by
- fixed: Since I cannot reproduce this, have the settings handler deregister …
- 1:08 PM Ticket #8501 (swapna) closed by
- not a bug: Hi Sarah, The swapna command was only implemented fairly recently, so …
- 1:08 PM Ticket #8500 (swapna) closed by
- not a bug
- 12:38 PM Ticket #8501 (swapna) created by
- […]
- 12:34 PM Ticket #8500 (swapna) created by
- […]
- 12:28 PM Ticket #8499 (Collate details about DICOM collections from series) created by
- The nbia api is much more detailed at the study level than the …
- 11:32 AM ChangeLog edited by
- (diff)
- 10:44 AM Ticket #8498 (Crash clearing aniso_u6) closed by
- duplicate: Duplicate of #8457
- 10:18 AM Ticket #8495 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:17 AM Ticket #8493 (Crash Reporter: Permission denied) closed by
- duplicate: This problem was fixed a few years ago. Update to the current …
- 10:15 AM Dev2022-2-20 created by
- 10:14 AM DeveloperMeetings edited by
- (diff)
- 10:13 AM 2023-2-16 edited by
- (diff)
- 10:13 AM 2023-2-16 created by
- 10:10 AM Ticket #8498 (Crash clearing aniso_u6) created by
- […]
- 10:10 AM DeveloperMeetings edited by
- (diff)
- 9:38 AM Ticket #8474 (SEQCROW: crash forming tsbond) closed by
- fixed: The PseudobondGroup constructor for structure-associated groups adds …
- 9:01 AM Ticket #8497 (ArtiaX: rotate selected particles: arrays used as indices must be of ...) created by
- […]
- 8:32 AM Ticket #8494 (Session restore: invalid load key) closed by
- duplicate: Hi Hannah, We believe this error occurs when you try to restore a …
- 8:16 AM Ticket #8490 (Crash opening PDB) closed by
- can't reproduce
- 7:48 AM Ticket #8496 (Crash in event loop) created by
- […]
- 7:47 AM Ticket #8495 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) created by
- […]
- 4:15 AM Ticket #8494 (Session restore: invalid load key) created by
- […]
- 4:14 AM Ticket #8493 (Crash Reporter: Permission denied) created by
- […]
Feb 13, 2023:
- 11:37 PM Ticket #8492 (ISOLDE: Can't install package: invalid requirement specified) created by
- […] SCR-20230214-n2k.png
- 6:45 PM Dev2022-2-13 edited by
- (diff)
- 6:39 PM Ticket #8491 (Opening ORCA file: could not broadcast input array from shape) created by
- […] ma.h2s-opt-freq-ccsdt-tz-mo2.out
- 6:15 PM Ticket #1902 (RFE: surface should update during trajectory playback) closed by
- fixed: Molecular surfaces automatically update when atoms move or are …
- 5:52 PM Ticket #8473 (Show chain sequence: TypeError: __init__() got an unexpected keyword ...) closed by
- fixed: Hi Michael, Thanks for reporting the problem with the sequence …
- 5:45 PM Ticket #8487 (Move selected model moving other models) closed by
- not a bug: The mouse mode called "Drag model" in the toolbar (command 'ui right …
- 5:44 PM Ticket #8478 (Add Charges: hydrogen bonded to atom that should not have hydrogens) closed by
- fixed: Need to use templates (of GLY) for UNK residue if backbone atoms …
- 5:16 PM Dev2022-2-13 edited by
- (diff)
- 4:36 PM Ticket #8490 (Crash opening PDB) created by
- […]
- 2:37 PM Ticket #8489 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 2:36 PM Ticket #8488 (Crash destroying tool) closed by
- can't reproduce: User dropped a session onto a ChimeraX where an AlphaFold prediction …
- 1:54 PM Ticket #8489 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 1:09 PM Ticket #8488 (Crash destroying tool) created by
- […]
- 12:51 PM Ticket #8487 (Move selected model moving other models) created by
- […]
- 12:17 PM Ticket #8470 (KeyError formatting blast results) closed by
- fixed: Based on the KeyError I think this happens when the BLAST results come …
- 11:20 AM Ticket #8486 (After session restore: wrapped C/C++ object of type ChainListWidget ...) closed by
- duplicate
- 11:19 AM Ticket #8485 (After session restore: wrapped C/C++ object of type ChainListWidget ...) closed by
- can't reproduce: Would need the session file to have a shot
- 11:12 AM Ticket #8481 (Cannot find Python library) closed by
- can't reproduce: 1.2.5
- 11:07 AM Ticket #8479 (Out of memory reading trajectory) closed by
- limitation: Hi Sergio, ChimeraX is trying to read your entire trajectory. I …
- 10:46 AM Ticket #8475 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 10:38 AM Ticket #8468 (Change Google account for AlphaFold) closed by
- nonchimerax: Here is a description of how to change your Google sign-in for …
- 10:23 AM Ticket #8471 (Crash handling pointer in numpy) closed by
- can't reproduce: 1.3
- 10:18 AM Ticket #8469 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 9:20 AM Ticket #8486 (After session restore: wrapped C/C++ object of type ChainListWidget ...) created by
- […]
- 9:20 AM Ticket #8485 (After session restore: wrapped C/C++ object of type ChainListWidget ...) created by
- […]
- 7:43 AM Ticket #8484 ("styling lost" in hand-edited mmCIF) created by
- […]
- 7:01 AM Ticket #8483 (Merging fragments issues) created by
- […]
- 6:31 AM Ticket #8482 (Update OpenMM to 8.0.0 for 1.6) created by
- […] OpenMM-8.0.0-Linux.tgz
- 3:19 AM Ticket #8481 (Cannot find Python library) created by
- […]
Feb 12, 2023:
Feb 11, 2023:
- 9:03 PM Ticket #8479 (Out of memory reading trajectory) created by
- […]
- 2:26 PM Ticket #8478 (Add Charges: hydrogen bonded to atom that should not have hydrogens) created by
- […]
- 1:59 PM Ticket #8477 (Fetch PDB fails in Python 3.11 ChimeraX) closed by
- fixed: Fixed in python311 branch. Standard Python module email.utils …
- 1:51 PM Ticket #8477 (Fetch PDB fails in Python 3.11 ChimeraX) created by
- […]
- 2:35 AM Ticket #8476 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 2:27 AM Ticket #8475 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 2:11 AM Ticket #8474 (SEQCROW: crash forming tsbond) created by
- […]
Feb 10, 2023:
- 12:56 PM Dev2022-2-13 created by
- 12:54 PM DeveloperMeetings edited by
- (diff)
- 12:50 PM 2023-2-9 edited by
- (diff)
- 9:18 AM Ticket #8473 (Show chain sequence: TypeError: __init__() got an unexpected keyword ...) created by
- […]
- 8:01 AM Ticket #8472 (Various simulation errors) created by
- […]
- 4:15 AM Ticket #8471 (Crash handling pointer in numpy) created by
- […]
- 4:08 AM Ticket #8470 (KeyError formatting blast results) created by
- […]
- 3:55 AM Ticket #8464 (ISOLDE: Unparameterised residue detected) closed by
- duplicate: Updating to ISOLDE 1.5 (by first updating to ChimeraX 1.5) should take …
- 1:01 AM Ticket #8469 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
Feb 9, 2023:
- 9:38 PM Ticket #8468 (Change Google account for AlphaFold) created by
- […]
- 7:27 PM Ticket #8465 (Marker surface does not move with marker) closed by
- worksforme: The molecular surface updates as expected for me in the current …
- 6:53 PM Ticket #8466 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 4:25 PM Ticket #8462 (Graphics crash, macOS 11.5.2, Intel Iris Plus Graphics 640) closed by
- can't reproduce: 1.2.5
- 4:22 PM Ticket #8467 (need to vary number of dashes in missing segments psuedobond depending ...) created by
- 6xra_rebuilt_glycan_chains_reassigned.cif in #4342 has a really long, …
- 4:18 PM Ticket #8461 (Crash in event loop) closed by
- can't reproduce
- 2:18 PM NIAID2022 edited by
- (diff)
- 2:01 PM NIAID2022 edited by
- (diff)
- 1:33 PM NIAID2022 edited by
- (diff)
- 1:25 PM NIAID2022 edited by
- (diff)
- 11:04 AM Ticket #8466 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 645) created by
- […]
- 10:57 AM Ticket #8465 (Marker surface does not move with marker) created by
- […] disconnect.cxs
- 10:12 AM Ticket #8308 (Crash opening mmCIF) closed by
- can't reproduce: Need the mmCIF file to reproduce the problem.
- 5:29 AM Ticket #8464 (ISOLDE: Unparameterised residue detected) created by
- […]
- 2:02 AM Ticket #8463 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by
- […]
Feb 8, 2023:
- 6:08 PM Ticket #8459 (mmCIF "more info" shows raw HTML) closed by
- fixed: Fixed.
- 3:45 PM Ticket #8462 (Graphics crash, macOS 11.5.2, Intel Iris Plus Graphics 640) created by
- […]
- 3:30 PM Ticket #8451 (Load a default database with Download DICOM tool) closed by
- fixed: In …
- 1:52 PM Ticket #8461 (Crash in event loop) created by
- […]
- 11:21 AM Ticket #8456 (alphafold pae: 'NoneType' object has no attribute 'residues') closed by
- duplicate: This error was fixed in ChimeraX 1.5. You are opening AlphaFold PAE …
- 11:18 AM Ticket #8460 (self._current_reference is None) created by
- […]
- 9:39 AM Ticket #8458 (Save mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate: Hi Haaris, Thanks for reporting this problem. It was fixed in the …
- 8:59 AM Ticket #8459 (mmCIF "more info" shows raw HTML) created by
- […]
- 4:29 AM Ticket #8458 (Save mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
Feb 7, 2023:
- 11:33 PM Ticket #8457 (Crash clearing aniso_u6) created by
- […]
- 6:34 PM Ticket #8456 (alphafold pae: 'NoneType' object has no attribute 'residues') created by
- […]
- 5:56 PM Ticket #8455 (Crash in garbage collection) closed by
- duplicate: Hi Haoyang, Thanks for reporting this problem. Please upgrade to the …
- 5:02 PM Ticket #3871 (Add zone selection panel option to omit original selection) closed by
- fixed: Available in next daily build. Subject to Elaine tweaking.
- 3:01 PM Ticket #8455 (Crash in garbage collection) created by
- […]
- 2:19 PM Ticket #3387 (Render By Attribute tool) closed by
- duplicate
- 2:07 PM Ticket #4794 (Dock Prep) closed by
- fixed
- 1:22 PM Ticket #8452 (Fix labelling errors in the Download DICOM tool) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/4bfbc63551fab092c50243a83774f5 …
- 11:43 AM Ticket #8454 (Token starts with space) created by
- […]
- 11:20 AM Ticket #8453 (Associate Download DICOM entries with corresponding TCIA webpage) created by
- (6) If possible, I would like this additional action available for …
- 11:19 AM Ticket #8452 (Fix labelling errors in the Download DICOM tool) created by
- From an email sent by Elaine: (5b) The "Back to Databases" button …
- 11:17 AM Ticket #8451 (Load a default database with Download DICOM tool) created by
- From an email from Elaine: (1) Tool starts up with Database: None. …
- 10:39 AM 2023-2-9 edited by
- (diff)
- 10:38 AM 2023-2-9 created by
- 10:37 AM DeveloperMeetings edited by
- (diff)
- 9:52 AM Ticket #8445 (Help Viewer, authorize: 'PasswordDialog' object has no attribute 'exec_') closed by
- fixed: This problem was due to a missed change from PyQt 5 to PyQt 6. It's …
- 9:37 AM Ticket #8450 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- can't reproduce
- 9:25 AM Ticket #8448 ('CentroidModel' object has no attribute 'distance') closed by
- duplicate: Duplicate of #8449
- 4:45 AM Ticket #8450 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 4:38 AM Ticket #8449 ('CentroidModel' object has no attribute 'distance') created by
- […]
- 4:36 AM Ticket #8448 ('CentroidModel' object has no attribute 'distance') created by
- […]
Feb 6, 2023:
- 12:47 PM Ticket #8447 (Crash closing tool window) created by
- […]
- 11:37 AM Ticket #8443 (No checkwaters command) closed by
- fixed: Removed references to non-existent "checkwaters" command
- 11:12 AM Ticket #8434 (Rainbow and color sequential) closed by
- not a bug: The rainbow chain or color sequential chain command colors only the …
- 10:55 AM Ticket #8446 (Cartoon of large 7y5e is slow, takes 30 seconds first time, 4 seconds ...) created by
- […]
- 10:48 AM Ticket #8435 (Crash computing ribbons) closed by
- can't reproduce: That 7y5e PDB model is a monster with 1.2 million atoms and 150,000 …
- 10:28 AM Ticket #8444 (invalid parameter not satisfying: !isnan(newOrigin.y)) closed by
- can't reproduce: Hi TJ, You should drag ChimeraX from the .dmg window into your …
- 10:10 AM Ticket #8440 (Clipper: crash setting aniso_u6) closed by
- can't reproduce: Right. We hope to make it more obvious that you need to drag the app …
- 9:45 AM Ticket #8445 (Help Viewer, authorize: 'PasswordDialog' object has no attribute 'exec_') created by
- […]
- 9:42 AM Ticket #8442 (Crash opening PDB) closed by
- can't reproduce
- 9:41 AM Ticket #8441 (Incorrectly installed CUDA) closed by
- fixed: Hi Saverio, Glad you were able to get it working. --Eric Eric …
- 9:37 AM Ticket #8390 (Allow opening (downloading) DICOM files from tcia) closed by
- fixed: This was implemented in a …
- 9:26 AM Ticket #8439 (Crash in event loop) closed by
- can't reproduce: Hi Cesar, I recommend upgrading to ChimeraX 1.5, which will provide …
Feb 5, 2023:
- 10:40 PM Ticket #8444 (invalid parameter not satisfying: !isnan(newOrigin.y)) created by
- […]
- 4:30 AM Ticket #8443 (No checkwaters command) created by
- […]
- 2:57 AM Ticket #8442 (Crash opening PDB) created by
- […]
- 1:15 AM Ticket #8441 (Incorrectly installed CUDA) created by
- […]
Feb 4, 2023:
- 4:36 PM Ticket #8440 (Clipper: crash setting aniso_u6) created by
- […]
- 4:31 AM Ticket #8439 (Crash in event loop) created by
- […]
Feb 3, 2023:
- 5:17 PM Ticket #8438 (AlphaFold JSON vs. MOLE JSON) closed by
- not a bug: ChimeraX does not use the open command to AlphaFold PAE error …
- 5:02 PM Ticket #8438 (AlphaFold JSON vs. MOLE JSON) created by
- […]
- 4:33 PM Ticket #8436 (VR picking distance is too large) closed by
- fixed: Fixed. I've changed the definition of the vr command clickRange value …
- 4:25 PM Ticket #8437 (QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border) created by
- […]
- 4:23 PM Ticket #8436 (VR picking distance is too large) created by
- […]
- 3:25 PM Ticket #8435 (Crash computing ribbons) created by
- […]
- 1:06 PM Ticket #8394 (RFE: EMDB-SFF transform) closed by
- fixed: Fixed. In tonight's daily builds dated Feb 4. The ChimeraX EMDB SFF …
- 11:24 AM Ticket #8432 (Correctly handle 'view sel' for custom model with only some positions ...) closed by
- limitation: You came to the right conclusion. Adding a Model child using …
- 11:15 AM Ticket #8433 (PermissionError launching ffmpeg to encode movie, Windows) closed by
- nonchimerax: Unclear why Windows refuses to start ffmpeg. Maybe antivirus shut it down.
- 10:24 AM Ticket #8434 (Rainbow and color sequential) created by
- […]
- 5:31 AM Ticket #8433 (PermissionError launching ffmpeg to encode movie, Windows) created by
- […]
- 5:26 AM Ticket #8432 (Correctly handle 'view sel' for custom model with only some positions ...) created by
- […]
Feb 2, 2023:
- 6:22 PM 2023-2-2 edited by
- (diff)
- 6:10 PM ChangeLog edited by
- (diff)
- 6:08 PM Ticket #8431 (Make VR picking use proximity to cone tip) created by
- Currently VR hand controller modes pick objects by looking at the …
- 6:05 PM Ticket #4232 (RFE: make ViewDockX understand SwissDock output) closed by
- fixed: Will be available in the next daily build. You will have to open both …
- 2:52 PM Ticket #8430 (Make SDF markups available as attributes) created by
- ... and present them in log as table. Only single-value attributes …
- 2:25 PM NIAID2022 edited by
- (diff)
- 2:23 PM NIAID2022 edited by
- (diff)
- 2:08 PM NIAID2022 edited by
- (diff)
- 1:07 PM NIAID2022 edited by
- (diff)
- 12:24 PM Ticket #8429 (Allow GLTF export to divide objects so each can be a single color for ...) created by
- The Enduvo VR presentation software does not appear to handle texture …
- 10:59 AM Ticket #8428 (Include electrostatic coloring in GLTF exported models using textures) created by
- It would be worth trying exporting texture colors for surfaces colored …
- 10:52 AM GrantAims2 edited by
- (diff)
- 10:51 AM GrantAims2 edited by
- (diff)
- 10:24 AM Ticket #8427 (Unsupported scale factor (0.000000) detected on Display0) closed by
- can't reproduce: *Possibly* the same as #8226. The user does have two displays.
- 10:18 AM Ticket #8392 (Crash calculating step 1 contour surface) closed by
- can't reproduce: Crash trying to compute the contour surface of a large map 1100 by …
- 10:09 AM Ticket #8426 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 10:05 AM Ticket #8423 (Graphics crash, macOS 11.7.2, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 7:50 AM Ticket #8427 (Unsupported scale factor (0.000000) detected on Display0) created by
- […]
- 7:18 AM Ticket #8426 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 6:50 AM Ticket #8425 (Reload non-bundle) created by
- […]
- 6:46 AM Ticket #8424 (devel bundle reloadModule) created by
- […]
Feb 1, 2023:
- 5:48 PM 2023-2-2 edited by
- (diff)
- 2:37 PM Ticket #8423 (Graphics crash, macOS 11.7.2, Intel Iris Plus Graphics) created by
- […]
- 2:29 PM Ticket #8422 (Testing bug reporter to see if submit button goes away. It does.) closed by
- not a bug
- 2:25 PM Ticket #8422 (Testing bug reporter to see if submit button goes away. It does.) created by
- […]
- 1:58 PM Ticket #8420 (Crash showing Rapid Access at startup: Qt fatal error: Failed to ...) closed by
- can't reproduce: Linux
- 1:56 PM Ticket #8404 (glClear: out of memory) closed by
- nonchimerax: The glClear() out of memory error seems unexpected given that only a …
- 1:23 PM Ticket #8418 (glClear: out of memory) closed by
- duplicate
- 1:22 PM Ticket #8417 (glClear: out of memory) closed by
- duplicate
- 1:21 PM Ticket #8416 (glClear: out of memory) closed by
- duplicate
- 1:21 PM Ticket #8415 (glClear: out of memory) closed by
- duplicate
- 1:20 PM Ticket #8414 (glClear: out of memory) closed by
- duplicate
- 1:19 PM Ticket #8413 (glClear: out of memory) closed by
- duplicate
- 1:18 PM Ticket #8421 (DevelExtras: opanel.bundle_info.value is None) created by
- […]
- 1:18 PM Ticket #8412 (glClear: out of memory) closed by
- duplicate
- 1:17 PM Ticket #8411 (glClear: out of memory) closed by
- duplicate
- 1:17 PM Ticket #8420 (Crash showing Rapid Access at startup: Qt fatal error: Failed to ...) created by
- […]
- 1:16 PM Ticket #8410 (glClear: out of memory) closed by
- duplicate
- 1:15 PM Ticket #8409 (glClear: out of memory) closed by
- duplicate
- 1:14 PM Ticket #8408 (glClear: out of memory) closed by
- duplicate
- 1:13 PM Ticket #8407 (glClear: out of memory) closed by
- duplicate
- 1:12 PM Ticket #8406 (glClear: out of memory) closed by
- duplicate
- 1:11 PM Ticket #8405 (glClear: out of memory) closed by
- duplicate
- 12:59 PM Ticket #8419 (XMAS: pandas.errors.ParserError: Too many columns specified) created by
- […]
- 12:52 PM Ticket #8397 (Read PDB: UnicodeDecodeError: 'utf-8' codec can't decode byte) closed by
- can't reproduce: Can't reproduce it on Windows either
- 12:45 PM Ticket #8418 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8417 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8416 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8415 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8414 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8413 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8412 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8411 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8410 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8409 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8408 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8407 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8406 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8405 (glClear: out of memory) created by
- […]
- 12:45 PM Ticket #8404 (glClear: out of memory) created by
- […]
- 12:17 PM Ticket #8403 (Delete status bar: wrapped C/C++ object of type QScreen has been deleted) created by
- […]
- 12:06 PM Ticket #8402 (Crash in ffmpeg fork under Rosetta emulation) closed by
- nonchimerax: The problem seems to be that ChimeraX is trying to run ffmpeg to …
- 11:31 AM Ticket #8398 (ISOLDE: crash in populate_clash_table) closed by
- fixed: Fixed since ISOLDE 1.4.
- 11:09 AM Ticket #8401 (Read .gro: name 'UserError' is not defined) closed by
- duplicate
- 11:09 AM Ticket #8402 (Crash in ffmpeg fork under Rosetta emulation) created by
- […]
- 11:00 AM Ticket #8399 (Crash in fork() under Rosetta emulation) closed by
- duplicate: Looks like it was forking off ffmpeg
- 7:42 AM Ticket #8401 (Read .gro: name 'UserError' is not defined) created by
- […]
- 2:58 AM Ticket #8400 (ISOLDE cursor freeze) created by
- […]
- 2:09 AM Ticket #8399 (Crash in fork() under Rosetta emulation) created by
- […]
- 1:57 AM Ticket #8398 (ISOLDE: crash in populate_clash_table) created by
- […]
Jan 31, 2023:
- 5:47 PM Ticket #8396 (Crash saving image) closed by
- can't reproduce: Linux
- 3:29 PM Ticket #8397 (Read PDB: UnicodeDecodeError: 'utf-8' codec can't decode byte) created by
- […]
- 1:23 PM Ticket #8364 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- can't reproduce: Not Linux-only (see #8393)
- 1:00 PM Ticket #8396 (Crash saving image) created by
- […]
- 11:58 AM Ticket #8395 (Restore new session in old ChimeraX) closed by
- limitation: Hi Rishi, While ChimeraX is guaranteed to restore old session files …
- 11:52 AM Ticket #8393 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by
- can't reproduce: Tried various things -- couldn't reproduce
- 9:36 AM 2023-2-2 created by
- 9:34 AM DeveloperMeetings edited by
- (diff)
- 9:17 AM Ticket #8395 (Restore new session in old ChimeraX) created by
- […]
- 8:58 AM Ticket #8394 (RFE: EMDB-SFF transform) created by
- […]
- 2:35 AM Ticket #8393 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
Jan 30, 2023:
- 5:42 PM Dev2022-1-30 edited by
- (diff)
- 5:19 PM Ticket #8392 (Crash calculating step 1 contour surface) created by
- […]
- 1:33 PM Ticket #8345 (Crash clearing aniso_u6) closed by
- can't reproduce: Instead of detecting whether it's running directly from the .dmg, I …
- 12:24 PM Ticket #8386 (glClear: invalid framebuffer operation) closed by
- nonchimerax: OpenGL error on Mac with two displays and AMD Radeon Pro Vega 20. …
- 12:21 PM Ticket #8385 (Graphics crash, macOS 11.7, NVIDIA GeForce GT 750M) closed by
- nonchimerax: Apple Nvidia graphics driver crash.
- 12:14 PM Ticket #8383 (cannot import name '_log_alphafold_chain_table') closed by
- fixed: This is a bug in your ChimeraX daily build from November 19, 2022. …
- 11:32 AM Ticket #8377 (Zone selection: NumPy array is not contiguous) closed by
- fixed: Fixed. There are no C3 atoms in the structure where "select zone C 2 …
- 11:08 AM Ticket #8391 (Make AlphaFold Coloring CA-distance coloring work for any two aligned ...) created by
- Two comments on a YouTube ChimeraX video that shows AlphaFold …
- 10:12 AM Ticket #8390 (Allow opening (downloading) DICOM files from tcia) created by
- In the latest NIAID statement of work, we write that we want to be …
- 10:10 AM Ticket #8389 (Implement a NifTI File Reader) created by
- NifTI is increasingly popular as a medical imaging format. TCIA, a …
- 9:22 AM Ticket #8387 (Unknown crash) closed by
- can't reproduce
- 9:05 AM Ticket #8382 (Crash processing timer event) closed by
- can't reproduce: This is kind of weird: ChimeraX Version: 1.5 (2022-11-24 00:03:27 …
- 8:57 AM Ticket #8388 (gaps between pseudobonds and ribbons in printable representations) created by
- […] [[Image(...)]] [[Image(...)]] …
- 8:57 AM Ticket #8381 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:54 AM Ticket #8380 (Crash reading PDB file) closed by
- can't reproduce: 1.2.5
- 8:52 AM Ticket #8379 (Dead Structure Measurement tool trying to show status) closed by
- duplicate: duplicate of #8148
- 8:47 AM Ticket #8378 (Unknown crash at startup) closed by
- can't reproduce
- 8:44 AM Ticket #8387 (Unknown crash) created by
- […]
- 7:37 AM Ticket #8386 (glClear: invalid framebuffer operation) created by
- […]
- 12:21 AM Ticket #8385 (Graphics crash, macOS 11.7, NVIDIA GeForce GT 750M) created by
- […]
- 12:14 AM Ticket #8384 (sm.start_sim: _openmm.new_Context: bad allocation) created by
- […]
Jan 29, 2023:
Jan 28, 2023:
Jan 27, 2023:
- 4:48 PM Ticket #8381 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:20 PM Ticket #8380 (Crash reading PDB file) created by
- […]
- 3:05 PM Ticket #8379 (Dead Structure Measurement tool trying to show status) created by
- […]
- 2:08 PM Ticket #8378 (Unknown crash at startup) created by
- […]
Jan 26, 2023:
- 6:33 PM Ticket #8377 (Zone selection: NumPy array is not contiguous) created by
- […]
- 6:03 PM Ticket #8376 ("measure sasa" does not return value) closed by
- fixed: Fixed. The measure sasa command now returns the total area, and if …
- 5:42 PM Ticket #8376 ("measure sasa" does not return value) created by
- The "measure sasa" command does not return the value, making it pretty …
- 5:12 PM Ticket #8375 (Quest 2 VR viewer of ChimeraX GLTF scenes) created by
- Allow viewing ChimeraX exported scenes in GLTF format on standalone VR …
- 5:05 PM Ticket #8373 (swapna: 'NoneType' object has no attribute 'coord') closed by
- fixed: Structure O1P/O2P needs to be looked up as OP1/OP2 in template. Fix: …
- 5:02 PM 2023-1-26 edited by
- (diff)
- 4:37 PM Ticket #8374 (crash while saving a PDB file) closed by
- fixed: Fix: …
- 4:12 PM 2023-1-26 edited by
- (diff)
- 3:07 PM NIAID2022 edited by
- (diff)
- 2:16 PM NIAID2022 edited by
- (diff)
- 2:13 PM NIAID2022 edited by
- (diff)
- 2:03 PM NIAID2022 edited by
- (diff)
- 2:02 PM Ticket #8218 (Bio assembly of 2JTN missing many atoms) closed by
- duplicate: Duplicate of #8153
- 1:40 PM NIAID2022 edited by
- (diff)
- 10:53 AM Ticket #8372 (isolde sim stop discardTo start: 'NoneType' object has no attribute 'atoms') closed by
- duplicate: Stopping a simulation with the rotamer preview visible. Fixed a while back.
- 10:45 AM Ticket #8374 (crash while saving a PDB file) created by
- Open 2-compound.cif from #4479 and then try to save it as a PDB file. …
- 9:06 AM Ticket #8373 (swapna: 'NoneType' object has no attribute 'coord') created by
- […]
- 9:02 AM Ticket #8372 (isolde sim stop discardTo start: 'NoneType' object has no attribute 'atoms') created by
- […]
- 8:54 AM Ticket #8371 (KeyError in floating-tool dict after de-iconfiy) closed by
- duplicate: Duplicate of #7743
- 3:54 AM Ticket #8371 (KeyError in floating-tool dict after de-iconfiy) created by
- […]
Jan 25, 2023:
- 4:40 PM Ticket #8263 (Problems with combine command) closed by
- fixed: Structure::_copy(), which combine uses, transforms coordinates *in …
- 10:37 AM Ticket #8370 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:32 AM Ticket #8370 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 9:26 AM Ticket #8369 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 9:24 AM Ticket #8368 (Crash saving image) closed by
- can't reproduce: Linux, 1.3
- 8:47 AM Ticket #8369 (Crash showing Rapid Access at startup) created by
- […]
- 8:25 AM Ticket #8368 (Crash saving image) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
