MatchMaker: 'NoneType' object has no attribute 'setChecked'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-5.15.0-58-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.6.dev202301110012 (2023-01-11 00:12:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.6.dev202301110012 (2023-01-11)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_1_111.pdb"

Chain information for unrelaxed_model_1_111.pdb #1  
---  
Chain | Description  
A | No description available  
  

> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_1_194.pdb"

Chain information for unrelaxed_model_1_194.pdb #2  
---  
Chain | Description  
A | No description available  
  

> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_2_106.pdb"

Chain information for unrelaxed_model_2_106.pdb #3  
---  
Chain | Description  
A | No description available  
  

> open "/home/azinas/projects/Claudio/Claudio closest/unrelaxed_model_4_3.pdb"

Chain information for unrelaxed_model_4_3.pdb #4  
---  
Chain | Description  
A | No description available  
  

> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_4_87.pdb"

Chain information for unrelaxed_model_4_87.pdb #5  
---  
Chain | Description  
A | No description available  
  

> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_4_111.pdb"

Chain information for unrelaxed_model_4_111.pdb #6  
---  
Chain | Description  
A | No description available  
  

> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_4_194.pdb"

Chain information for unrelaxed_model_4_194.pdb #7  
---  
Chain | Description  
A | No description available  
  

> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_5_108.pdb"

Chain information for unrelaxed_model_5_108.pdb #8  
---  
Chain | Description  
A | No description available  
  

> open /home/azinas/projects/Claudio/rebuild/J91.mrc

Opened J91.mrc as #9, grid size 384,384,384, pixel 0.857, shown at level
0.000546, step 2, values float32  

> volume #9 level 0.0543

> open /home/azinas/projects/Claudio/rebuild/rebuild.2.pdb

Chain information for rebuild.2.pdb #10  
---  
Chain | Description  
Aa | No description available  
Ab | No description available  
Ac | No description available  
Ad | No description available  
Ae | No description available  
Af | No description available  
Ag | No description available  
Ah | No description available  
Ai | No description available  
Aj | No description available  
Ak | No description available  
Al | No description available  
Am | No description available  
An | No description available  
Ao | No description available  
Ba | No description available  
  

> show cartoons

> hide atoms

> ui tool show Matchmaker

> matchmaker #1 to #10/Aa pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Aa (#10) with unrelaxed_model_1_111.pdb, chain
A (#1), sequence alignment score = 1039.9  
RMSD between 93 pruned atom pairs is 0.899 angstroms; (across all 248 pairs:
14.075)  
  

> matchmaker #2 to #10/Ab pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ab (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1073.2  
RMSD between 112 pruned atom pairs is 1.037 angstroms; (across all 247 pairs:
16.332)  
  

> matchmaker #3 to #10/Ac pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ac (#10) with unrelaxed_model_2_106.pdb, chain
A (#3), sequence alignment score = 1085.8  
RMSD between 107 pruned atom pairs is 0.906 angstroms; (across all 247 pairs:
4.607)  
  

> matchmaker #4 to #10/Ad pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ad (#10) with unrelaxed_model_4_3.pdb, chain A
(#4), sequence alignment score = 1022.9  
RMSD between 23 pruned atom pairs is 0.956 angstroms; (across all 244 pairs:
13.184)  
  

> matchmaker #5 to #10/Ae pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ae (#10) with unrelaxed_model_4_87.pdb, chain
A (#5), sequence alignment score = 1033.3  
RMSD between 85 pruned atom pairs is 1.180 angstroms; (across all 243 pairs:
4.134)  
  

> matchmaker #6 to #10/Af pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Af (#10) with unrelaxed_model_4_111.pdb, chain
A (#6), sequence alignment score = 943.5  
RMSD between 128 pruned atom pairs is 1.206 angstroms; (across all 229 pairs:
2.677)  
  

> matchmaker #7 to #10/Ag pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ag (#10) with unrelaxed_model_4_194.pdb, chain
A (#7), sequence alignment score = 1165.5  
RMSD between 142 pruned atom pairs is 1.204 angstroms; (across all 300 pairs:
3.371)  
  
No reference and/or match structure/chain chosen  
[Repeated 2 time(s)]

> ui tool show Matchmaker

> matchmaker #4 to #10/Aj pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Aj (#10) with unrelaxed_model_4_3.pdb, chain A
(#4), sequence alignment score = 1077.3  
RMSD between 142 pruned atom pairs is 1.243 angstroms; (across all 293 pairs:
3.442)  
  

> hide #4 models

> show #4 models

> hide #4 models

> hide #!10 models

> show #!10 models

> hide #!9 models

> hide #8 models

> show #8 models

> select add #8

5188 atoms, 5251 bonds, 660 residues, 1 model selected  

> ui mousemode right "translate selected models"

> view matrix models #8,1,0,0,63.989,0,1,0,69.196,0,0,1,181.08

> view matrix models #8,1,0,0,166.64,0,1,0,167.05,0,0,1,153.69

> ui mousemode right "rotate selected models"

> view matrix models
> #8,0.90824,0.3212,-0.2682,163.55,-0.396,0.45262,-0.79895,164.66,-0.13523,0.83185,0.53828,147.09

> ui mousemode right "translate selected models"

> view matrix models
> #8,0.90824,0.3212,-0.2682,182.04,-0.396,0.45262,-0.79895,176.15,-0.13523,0.83185,0.53828,116.95

> view matrix models
> #8,0.90824,0.3212,-0.2682,172.33,-0.396,0.45262,-0.79895,171.33,-0.13523,0.83185,0.53828,116.27

> ui mousemode right "rotate selected models"

> view matrix models
> #8,0.81975,0.32663,-0.47045,171.08,-0.57139,0.52245,-0.6329,171.39,0.039064,0.78763,0.61491,117.3

> select subtract #8

Nothing selected  

> hide #8 models

> show #8 models

> hide #!10 models

> show #!10 models

> hide #!10 models

> hide #8 models

> hide #7 models

> show #7 models

> hide #6 models

> show #6 models

> hide #2 models

> show #2 models

> hide #2 models

> show #4 models

> show #2 models

> hide #2 models

> hide #4 models

> show #4 models

> hide #4 models

> show #4 models

> hide #4 models

> show #4 models

> hide #4 models

> hide #3 models

> show #3 models

> hide #5 models

> show #5 models

> show #8 models

> hide #8 models

> show #8 models

> hide #8 models

> show #!10 models

> hide #!10 models

> show #!10 models

> hide #!10 models

> show #!10 models

> hide #!10 models

> show #!10 models

> hide #!10 models

> show #!10 models

> hide #10.1 models

> show #10.1 models

> hide #10.1 models

> show #10.1 models

> hide #10.1 models

> show #10.1 models

> hide #!10 models

> show #!10 models

> hide #!10 models

> show #!10 models

> hide #!10 models

> show #!10 models

> matchmaker #4 to #10/Ad pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ad (#10) with unrelaxed_model_4_3.pdb, chain A
(#4), sequence alignment score = 1022.9  
RMSD between 23 pruned atom pairs is 0.956 angstroms; (across all 244 pairs:
13.184)  
  

> show #8 models

> show #1,3,5-8#!10 atoms

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> matchmaker #2 to #10/Aa pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Aa (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1054.9  
RMSD between 107 pruned atom pairs is 1.037 angstroms; (across all 248 pairs:
16.369)  
  

> show #2 models

> hide #1 models

> matchmaker #2 to #10/Aa pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Aa (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1054.9  
RMSD between 107 pruned atom pairs is 1.037 angstroms; (across all 248 pairs:
16.369)  
  

> hide #2 models

> show #1 models

> matchmaker #2 to #10/Ae pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ae (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1051.9  
RMSD between 96 pruned atom pairs is 0.914 angstroms; (across all 243 pairs:
17.907)  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>  
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
Error processing trigger "setting changed":  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>  
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
Error processing trigger "setting changed":  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>  
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
Error processing trigger "setting changed":  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
  
See log for complete Python traceback.  
  

> matchmaker #1-2 to #10

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ag (#10) with unrelaxed_model_1_111.pdb, chain
A (#1), sequence alignment score = 1160.1  
RMSD between 147 pruned atom pairs is 1.280 angstroms; (across all 300 pairs:
3.244)  
  
Matchmaker rebuild.2.pdb, chain Ag (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1157.1  
RMSD between 138 pruned atom pairs is 1.227 angstroms; (across all 300 pairs:
3.343)  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>  
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
Error processing trigger "setting changed":  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
  
See log for complete Python traceback.  
  

> matchmaker #1-2 to #10/Ak pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker rebuild.2.pdb, chain Ak (#10) with unrelaxed_model_1_111.pdb, chain
A (#1), sequence alignment score = 1017.9  
RMSD between 170 pruned atom pairs is 1.248 angstroms; (across all 280 pairs:
2.348)  
  
Matchmaker rebuild.2.pdb, chain Ak (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1014.9  
RMSD between 163 pruned atom pairs is 1.225 angstroms; (across all 280 pairs:
2.383)  
  

> show #2 models

> show #1-3,5-8#!10 cartoons

> hide #1-3,5-8#!10 atoms

> hide #!10 models

> show #!9 models

> hide #1 models

> hide #!9 models

> show #!9 models

> show #!10 models

> hide #!9 models

> hide #8 models

> show #8 models

> hide #8 models

> ui tool show Matchmaker




OpenGL version: 3.3.0 NVIDIA 515.43.04
OpenGL renderer: NVIDIA GeForce RTX 3060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.0, Qt 6.4.0
Qt runtime version: 6.4.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: LENOVO
Model: 20YM
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 AMD Ryzen 9 5900HX with Radeon Graphics
Cache Size: 512 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            30Gi        10Gi       2.8Gi       917Mi        16Gi        18Gi
	Swap:           16Gi          0B        16Gi

Graphics:
	01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA106M [GeForce RTX 3060 Mobile / Max-Q] [10de:2520] (rev a1)	
	Subsystem: Lenovo GA106M [GeForce RTX 3060 Mobile / Max-Q] [17aa:3801]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.12.7
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.5.8
    ChimeraX-AddH: 2.2.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.8
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.43.4
    ChimeraX-AtomicLibrary: 10.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.dev202301110012
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3.1
    ChimeraX-DockPrep: 1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.11
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.10
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.8
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.4
    ChimeraX-PDB: 2.6.11
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.1
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.26
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.6
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comm: 0.1.2
    contourpy: 1.0.6
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.5
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.0.0
    ipykernel: 6.19.2
    ipython: 8.7.0
    ipython-genutils: 0.2.0
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 7.4.8
    jupyter-core: 5.1.3
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.6.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.8
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.6.2
    prompt-toolkit: 3.0.36
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.4.0
    PyQt6-Qt6: 6.4.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.2
    python-dateutil: 2.8.2
    pytz: 2022.7
    pyzmq: 24.0.1
    qtconsole: 5.4.0
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.3
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.3
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.8.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

[pett]

_Seems_ like a duplicate of #7882, but that problem is fixed. Maybe somehow it's Linux only? Will have to wait until Thursday to test that theory out...

[pett]

Not Linux-only (see #8393)