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Opened 3 years ago
Closed 3 years ago
#8364 closed defect (can't reproduce)
MatchMaker: 'NoneType' object has no attribute 'setChecked'
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Comparison | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.15.0-58-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.6.dev202301110012 (2023-01-11 00:12:42 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.6.dev202301110012 (2023-01-11)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_1_111.pdb"
Chain information for unrelaxed_model_1_111.pdb #1
---
Chain | Description
A | No description available
> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_1_194.pdb"
Chain information for unrelaxed_model_1_194.pdb #2
---
Chain | Description
A | No description available
> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_2_106.pdb"
Chain information for unrelaxed_model_2_106.pdb #3
---
Chain | Description
A | No description available
> open "/home/azinas/projects/Claudio/Claudio closest/unrelaxed_model_4_3.pdb"
Chain information for unrelaxed_model_4_3.pdb #4
---
Chain | Description
A | No description available
> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_4_87.pdb"
Chain information for unrelaxed_model_4_87.pdb #5
---
Chain | Description
A | No description available
> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_4_111.pdb"
Chain information for unrelaxed_model_4_111.pdb #6
---
Chain | Description
A | No description available
> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_4_194.pdb"
Chain information for unrelaxed_model_4_194.pdb #7
---
Chain | Description
A | No description available
> open "/home/azinas/projects/Claudio/Claudio
> closest/unrelaxed_model_5_108.pdb"
Chain information for unrelaxed_model_5_108.pdb #8
---
Chain | Description
A | No description available
> open /home/azinas/projects/Claudio/rebuild/J91.mrc
Opened J91.mrc as #9, grid size 384,384,384, pixel 0.857, shown at level
0.000546, step 2, values float32
> volume #9 level 0.0543
> open /home/azinas/projects/Claudio/rebuild/rebuild.2.pdb
Chain information for rebuild.2.pdb #10
---
Chain | Description
Aa | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Ae | No description available
Af | No description available
Ag | No description available
Ah | No description available
Ai | No description available
Aj | No description available
Ak | No description available
Al | No description available
Am | No description available
An | No description available
Ao | No description available
Ba | No description available
> show cartoons
> hide atoms
> ui tool show Matchmaker
> matchmaker #1 to #10/Aa pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Aa (#10) with unrelaxed_model_1_111.pdb, chain
A (#1), sequence alignment score = 1039.9
RMSD between 93 pruned atom pairs is 0.899 angstroms; (across all 248 pairs:
14.075)
> matchmaker #2 to #10/Ab pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ab (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1073.2
RMSD between 112 pruned atom pairs is 1.037 angstroms; (across all 247 pairs:
16.332)
> matchmaker #3 to #10/Ac pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ac (#10) with unrelaxed_model_2_106.pdb, chain
A (#3), sequence alignment score = 1085.8
RMSD between 107 pruned atom pairs is 0.906 angstroms; (across all 247 pairs:
4.607)
> matchmaker #4 to #10/Ad pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ad (#10) with unrelaxed_model_4_3.pdb, chain A
(#4), sequence alignment score = 1022.9
RMSD between 23 pruned atom pairs is 0.956 angstroms; (across all 244 pairs:
13.184)
> matchmaker #5 to #10/Ae pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ae (#10) with unrelaxed_model_4_87.pdb, chain
A (#5), sequence alignment score = 1033.3
RMSD between 85 pruned atom pairs is 1.180 angstroms; (across all 243 pairs:
4.134)
> matchmaker #6 to #10/Af pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Af (#10) with unrelaxed_model_4_111.pdb, chain
A (#6), sequence alignment score = 943.5
RMSD between 128 pruned atom pairs is 1.206 angstroms; (across all 229 pairs:
2.677)
> matchmaker #7 to #10/Ag pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ag (#10) with unrelaxed_model_4_194.pdb, chain
A (#7), sequence alignment score = 1165.5
RMSD between 142 pruned atom pairs is 1.204 angstroms; (across all 300 pairs:
3.371)
No reference and/or match structure/chain chosen
[Repeated 2 time(s)]
> ui tool show Matchmaker
> matchmaker #4 to #10/Aj pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Aj (#10) with unrelaxed_model_4_3.pdb, chain A
(#4), sequence alignment score = 1077.3
RMSD between 142 pruned atom pairs is 1.243 angstroms; (across all 293 pairs:
3.442)
> hide #4 models
> show #4 models
> hide #4 models
> hide #!10 models
> show #!10 models
> hide #!9 models
> hide #8 models
> show #8 models
> select add #8
5188 atoms, 5251 bonds, 660 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #8,1,0,0,63.989,0,1,0,69.196,0,0,1,181.08
> view matrix models #8,1,0,0,166.64,0,1,0,167.05,0,0,1,153.69
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.90824,0.3212,-0.2682,163.55,-0.396,0.45262,-0.79895,164.66,-0.13523,0.83185,0.53828,147.09
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.90824,0.3212,-0.2682,182.04,-0.396,0.45262,-0.79895,176.15,-0.13523,0.83185,0.53828,116.95
> view matrix models
> #8,0.90824,0.3212,-0.2682,172.33,-0.396,0.45262,-0.79895,171.33,-0.13523,0.83185,0.53828,116.27
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.81975,0.32663,-0.47045,171.08,-0.57139,0.52245,-0.6329,171.39,0.039064,0.78763,0.61491,117.3
> select subtract #8
Nothing selected
> hide #8 models
> show #8 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> hide #8 models
> hide #7 models
> show #7 models
> hide #6 models
> show #6 models
> hide #2 models
> show #2 models
> hide #2 models
> show #4 models
> show #2 models
> hide #2 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> hide #3 models
> show #3 models
> hide #5 models
> show #5 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #10.1 models
> show #10.1 models
> hide #10.1 models
> show #10.1 models
> hide #10.1 models
> show #10.1 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> matchmaker #4 to #10/Ad pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ad (#10) with unrelaxed_model_4_3.pdb, chain A
(#4), sequence alignment score = 1022.9
RMSD between 23 pruned atom pairs is 0.956 angstroms; (across all 244 pairs:
13.184)
> show #8 models
> show #1,3,5-8#!10 atoms
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> matchmaker #2 to #10/Aa pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Aa (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1054.9
RMSD between 107 pruned atom pairs is 1.037 angstroms; (across all 248 pairs:
16.369)
> show #2 models
> hide #1 models
> matchmaker #2 to #10/Aa pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Aa (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1054.9
RMSD between 107 pruned atom pairs is 1.037 angstroms; (across all 248 pairs:
16.369)
> hide #2 models
> show #1 models
> matchmaker #2 to #10/Ae pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ae (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1051.9
RMSD between 96 pruned atom pairs is 0.914 angstroms; (across all 243 pairs:
17.907)
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
> matchmaker #1-2 to #10
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ag (#10) with unrelaxed_model_1_111.pdb, chain
A (#1), sequence alignment score = 1160.1
RMSD between 147 pruned atom pairs is 1.280 angstroms; (across all 300 pairs:
3.244)
Matchmaker rebuild.2.pdb, chain Ag (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1157.1
RMSD between 138 pruned atom pairs is 1.227 angstroms; (across all 300 pairs:
3.343)
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
> matchmaker #1-2 to #10/Ak pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rebuild.2.pdb, chain Ak (#10) with unrelaxed_model_1_111.pdb, chain
A (#1), sequence alignment score = 1017.9
RMSD between 170 pruned atom pairs is 1.248 angstroms; (across all 280 pairs:
2.348)
Matchmaker rebuild.2.pdb, chain Ak (#10) with unrelaxed_model_1_194.pdb, chain
A (#2), sequence alignment score = 1014.9
RMSD between 163 pruned atom pairs is 1.225 angstroms; (across all 280 pairs:
2.383)
> show #2 models
> show #1-3,5-8#!10 cartoons
> hide #1-3,5-8#!10 atoms
> hide #!10 models
> show #!9 models
> hide #1 models
> hide #!9 models
> show #!9 models
> show #!10 models
> hide #!9 models
> hide #8 models
> show #8 models
> hide #8 models
> ui tool show Matchmaker
OpenGL version: 3.3.0 NVIDIA 515.43.04
OpenGL renderer: NVIDIA GeForce RTX 3060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.0, Qt 6.4.0
Qt runtime version: 6.4.2
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: LENOVO
Model: 20YM
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 AMD Ryzen 9 5900HX with Radeon Graphics
Cache Size: 512 KB
Memory:
total used free shared buff/cache available
Mem: 30Gi 10Gi 2.8Gi 917Mi 16Gi 18Gi
Swap: 16Gi 0B 16Gi
Graphics:
01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA106M [GeForce RTX 3060 Mobile / Max-Q] [10de:2520] (rev a1)
Subsystem: Lenovo GA106M [GeForce RTX 3060 Mobile / Max-Q] [17aa:3801]
Kernel driver in use: nvidia
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2022.12.7
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.5.8
ChimeraX-AddH: 2.2.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.8
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.43.4
ChimeraX-AtomicLibrary: 10.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202301110012
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3.1
ChimeraX-DockPrep: 1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.11
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.10
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.8
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.4
ChimeraX-PDB: 2.6.11
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.1
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.26
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.6
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
comm: 0.1.2
contourpy: 1.0.6
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.5
decorator: 5.1.1
distro: 1.7.0
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.0.0
ipykernel: 6.19.2
ipython: 8.7.0
ipython-genutils: 0.2.0
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 7.4.8
jupyter-core: 5.1.3
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.6.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.8
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.0
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.6.2
prompt-toolkit: 3.0.36
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.4.0
PyQt6-Qt6: 6.4.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.2
python-dateutil: 2.8.2
pytz: 2022.7
pyzmq: 24.0.1
qtconsole: 5.4.0
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.3
setuptools: 65.1.1
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.3
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.8.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (3)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Structure Comparison |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → MatchMaker: 'NoneType' object has no attribute 'setChecked' |
comment:2 by , 3 years ago
comment:3 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Not Linux-only (see #8393)
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_Seems_ like a duplicate of #7882, but that problem is fixed. Maybe somehow it's Linux only? Will have to wait until Thursday to test that theory out...