Opened 3 years ago

Closed 3 years ago

#8445 closed defect (fixed)

Help Viewer, authorize: 'PasswordDialog' object has no attribute 'exec_'

Reported by: shabir.najmudin@… Owned by: Greg Couch
Priority: normal Milestone:
Component: General Controls Version:
Keywords: Cc: Zach Pearson
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)
CAnt access the site

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> toolshed show

Downloading bundle ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl  
Deferring bundle installation  
Unable to restart ChimeraX: [Errno 13] Permission denied  
Downloading bundle SEQCROW-1.5.14-py3-none-any.whl  

Errors may have occurred when running pip:  

pip standard error:  
\---  
  
[notice] A new release of pip available: 22.2.2 -> 23.0  
[notice] To update, run:
/Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX -m pip install
--upgrade pip  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing /Users/shabir/Downloads/SEQCROW-1.5.14-py3-none-any.whl  
Requirement already satisfied: psutil in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from SEQCROW==1.5.14) (5.9.1)  
Requirement already satisfied: ChimeraX-Core<=1.6,>=1.2 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from SEQCROW==1.5.14) (1.5)  
Collecting Send2Trash  
Downloading Send2Trash-1.8.0-py3-none-any.whl (18 kB)  
Requirement already satisfied: scipy in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from SEQCROW==1.5.14) (1.9.0)  
Requirement already satisfied: jinja2 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from SEQCROW==1.5.14) (3.1.2)  
Requirement already satisfied: MarkupSafe>=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from jinja2->SEQCROW==1.5.14) (2.1.1)  
Requirement already satisfied: numpy<1.25.0,>=1.18.5 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from scipy->SEQCROW==1.5.14) (1.23.1)  
Installing collected packages: Send2Trash, SEQCROW  
Successfully installed SEQCROW-1.5.14 Send2Trash-1.8.0  
\---  

Successfully installed SEQCROW-1.5.14 Send2Trash-1.8.0  
Installed SEQCROW (1.5.14)  
Downloading bundle
ChimeraX_Clipper-0.19.0-cp39-cp39-macosx_10_13_universal2.whl  
[Repeated 1 time(s)]Bundle installation canceled  
Downloading bundle ChimeraX_StrudelScore-0.2-py3-none-any.whl  

Errors may have occurred when running pip:  

pip standard error:  
\---  
  
[notice] A new release of pip available: 22.2.2 -> 23.0  
[notice] To update, run:
/Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX -m pip install
--upgrade pip  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing /Users/shabir/Downloads/ChimeraX_StrudelScore-0.2-py3-none-any.whl  
Collecting mrcfile>=1.1  
Downloading mrcfile-1.4.3-py2.py3-none-any.whl (43 kB)  
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 43.9/43.9 kB 1.6 MB/s eta 0:00:00  
Collecting threed-strudel>0.9  
Downloading threed_strudel-0.9.18-py3-none-any.whl (7.1 MB)  
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.1/7.1 MB 3.6 MB/s eta 0:00:00  
Requirement already satisfied: ChimeraX-Core<1.6 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-StrudelScore==0.2) (1.5)  
Collecting pandas>=0.24  
Downloading pandas-1.5.3-cp39-cp39-macosx_10_9_x86_64.whl (12.0 MB)  
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.0/12.0 MB 9.4 MB/s eta 0:00:00  
Requirement already satisfied: ChimeraX-ISOLDE>=1.2 in
/Users/shabir/Library/Application Support/ChimeraX/1.5/site-packages (from
ChimeraX-StrudelScore==0.2) (1.5)  
Requirement already satisfied: ChimeraX-Clipper>=0.15.0 in
/Users/shabir/Library/Application Support/ChimeraX/1.5/site-packages (from
ChimeraX-StrudelScore==0.2) (0.19.0)  
Collecting recordtype>=1.3  
Downloading recordtype-1.4-py2.py3-none-any.whl (13 kB)  
Collecting biopython>=1.77  
Downloading biopython-1.80-cp39-cp39-macosx_10_9_x86_64.whl (2.7 MB)  
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.7/2.7 MB 7.4 MB/s eta 0:00:00  
Requirement already satisfied: numpy in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from biopython>=1.77->ChimeraX-StrudelScore==0.2) (1.23.1)  
Requirement already satisfied: ChimeraX-Arrays~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.0)  
Requirement already satisfied: ChimeraX-Atomic~=1.36 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.41.5)  
Requirement already satisfied: ChimeraX-AtomicLibrary~=8.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (8.0.3)  
Requirement already satisfied: pytz>=2020.1 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from pandas>=0.24->ChimeraX-StrudelScore==0.2) (2022.6)  
Requirement already satisfied: python-dateutil>=2.8.1 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from pandas>=0.24->ChimeraX-StrudelScore==0.2) (2.8.2)  
Requirement already satisfied: six in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from recordtype>=1.3->ChimeraX-StrudelScore==0.2) (1.16.0)  
Requirement already satisfied: psutil in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from threed-strudel>0.9->ChimeraX-StrudelScore==0.2) (5.9.1)  
Requirement already satisfied: scipy in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from threed-strudel>0.9->ChimeraX-StrudelScore==0.2) (1.9.0)  
Requirement already satisfied: ChimeraX-ConnectStructure~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (2.0.1)  
Requirement already satisfied: ChimeraX-PDBLibrary~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (1.0.2)  
Requirement already satisfied: ChimeraX-mmCIF~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (2.8)  
Requirement already satisfied: ChimeraX-PDB~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (2.6.8)  
Requirement already satisfied: ChimeraX-Graphics~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (1.1)  
Requirement already satisfied: ChimeraX-Nucleotides~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (2.0.3)  
Requirement already satisfied: ChimeraX-Geometry~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (1.2)  
Requirement already satisfied: ChimeraX-SaveCommand~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-mmCIF~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.5.1)  
Requirement already satisfied: ChimeraX-DataFormats~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-mmCIF~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.2.2)  
Requirement already satisfied: ChimeraX-OpenCommand~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-mmCIF~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.9.1)  
Requirement already satisfied: ChimeraX-UI~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.24.3)  
Requirement already satisfied: ChimeraX-Surface~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.0)  
Requirement already satisfied: ChimeraX-IO~=1.0.1 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-PDB~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.0.1)  
Requirement already satisfied: ChimeraX-MapData~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (2.0)  
Requirement already satisfied: ChimeraX-Map~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.1.2)  
Requirement already satisfied: ChimeraX-StdCommands~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.10)  
Requirement already satisfied: ChimeraX-MouseModes~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-UI~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.1.1)  
Requirement already satisfied: ChimeraX-SelInspector~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-UI~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-StrudelScore==0.2) (1.0)  
Requirement already satisfied: ChimeraX-MapSeries~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Map~=1.0->ChimeraX-Surface~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (2.1.1)  
Requirement already satisfied: ChimeraX-MapFilter~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Map~=1.0->ChimeraX-Surface~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (2.0)  
Requirement already satisfied: ChimeraX-ItemsInspection~=1.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-SelInspector~=1.0->ChimeraX-UI~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (1.0.1)  
Requirement already satisfied: ChimeraX-MapFit~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-StdCommands~=1.0->ChimeraX-Surface~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (2.0)  
Requirement already satisfied: ChimeraX-Dssp~=2.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-StdCommands~=1.0->ChimeraX-Surface~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (2.0)  
Requirement already satisfied: ChimeraX-DistMonitor~=1.2 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-StdCommands~=1.0->ChimeraX-Surface~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper>=0.15.0->ChimeraX-
StrudelScore==0.2) (1.3)  
Installing collected packages: recordtype, mrcfile, biopython, threed-strudel,
pandas, ChimeraX-StrudelScore  
Successfully installed ChimeraX-StrudelScore-0.2 biopython-1.80 mrcfile-1.4.3
pandas-1.5.3 recordtype-1.4 threed-strudel-0.9.18  
\---  

Successfully installed ChimeraX-StrudelScore-0.2 biopython-1.80 mrcfile-1.4.3
pandas-1.5.3 recordtype-1.4 threed-strudel-0.9.18  
Installed ChimeraX-StrudelScore (0.2)  
Downloading bundle ChimeraX_StarMap-1.1.70-py3-none-any.whl  

Errors may have occurred when running pip:  

pip standard error:  
\---  
  
[notice] A new release of pip available: 22.2.2 -> 23.0  
[notice] To update, run:
/Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX -m pip install
--upgrade pip  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing /Users/shabir/Downloads/ChimeraX_StarMap-1.1.70-py3-none-any.whl  
Requirement already satisfied: ChimeraX-Core>=1.4 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-StarMap==1.1.70) (1.5)  
Collecting pyqtgraph  
Downloading pyqtgraph-0.13.1-py3-none-any.whl (966 kB)  
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 966.1/966.1 kB 6.3 MB/s eta 0:00:00  
Requirement already satisfied: pyparsing in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-StarMap==1.1.70) (3.0.9)  
Requirement already satisfied: numpy>=1.20.0 in
/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from pyqtgraph->ChimeraX-StarMap==1.1.70) (1.23.1)  
Installing collected packages: pyqtgraph, ChimeraX-StarMap  
Successfully installed ChimeraX-StarMap-1.1.70 pyqtgraph-0.13.1  
\---  

Successfully installed ChimeraX-StarMap-1.1.70 pyqtgraph-0.13.1  
Installed ChimeraX-StarMap (1.1.70)  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
AttributeError: 'PasswordDialog' object has no attribute 'exec_'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/help_viewer/tool.py", line 289, in authorize  
p.exec_()  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-14.7.28
OpenGL renderer: Intel HD Graphics 4000 OpenGL Engine
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro9,2
      Processor Name: Dual-Core Intel Core i5
      Processor Speed: 2.5 GHz
      Number of Processors: 1
      Total Number of Cores: 2
      L2 Cache (per Core): 256 KB
      L3 Cache: 3 MB
      Hyper-Threading Technology: Enabled
      Memory: 8 GB
      Boot ROM Version: 429.0.0.0.0
      SMC Version (system): 2.2f44
      Sudden Motion Sensor:
          State: Enabled

Software:

    System Software Overview:

      System Version: macOS 10.15.7 (19H2026)
      Kernel Version: Darwin 19.6.0
      Time since boot: 69 days 6:11

Graphics/Displays:

    Intel HD Graphics 4000:

      Chipset Model: Intel HD Graphics 4000
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x0166
      Revision ID: 0x0009
      Metal: Supported, feature set macOS GPUFamily1 v4
      Displays:
        Color LCD:
          Display Type: LCD
          Resolution: 1280 x 800
          UI Looks like: 1280 x 800
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    biopython: 1.80
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.19.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.5
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StarMap: 1.1.70
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-StrudelScore: 0.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    mrcfile: 1.4.3
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    pandas: 1.5.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    pyqtgraph: 0.13.1
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    recordtype: 1.4
    requests: 2.28.1
    scipy: 1.9.0
    Send2Trash: 1.8.0
    SEQCROW: 1.5.14
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    threed-strudel: 0.9.18
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (2)

comment:1 by pett, 3 years ago

Cc: Zach Pearson added
Component: UnassignedGeneral Controls
Owner: set to Greg Couch
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionHelp Viewer, authorize: 'PasswordDialog' object has no attribute 'exec_'

Reported by Shabir Najmudin

comment:2 by Greg Couch, 3 years ago

Resolution: fixed
Status: assignedclosed

This problem was due to a missed change from PyQt 5 to PyQt 6. It's fixed in the next daily build.

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