invalid parameter not satisfying: !isnan(newOrigin.y)
The following bug report has been submitted:
Platform: macOS-11.4-arm64-arm-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x0000000102c43d40 (most recent call first):
File "/private/var/folders/lg/m9l8023d79l50sllchqpnsb00000gn/T/AppTranslocation/A46D2F60-0E1F-471C-8433-FF6EAA0C259A/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/lg/m9l8023d79l50sllchqpnsb00000gn/T/AppTranslocation/A46D2F60-0E1F-471C-8433-FF6EAA0C259A/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/private/var/folders/lg/m9l8023d79l50sllchqpnsb00000gn/T/AppTranslocation/A46D2F60-0E1F-471C-8433-FF6EAA0C259A/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/private/var/folders/lg/m9l8023d79l50sllchqpnsb00000gn/T/AppTranslocation/A46D2F60-0E1F-471C-8433-FF6EAA0C259A/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/lg/m9l8023d79l50sllchqpnsb00000gn/T/AppTranslocation/A46D2F60-0E1F-471C-8433-FF6EAA0C259A/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [2907]
Path: /Volumes/VOLUME/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.5.0 (1.5.0.0)
Code Type: ARM-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [2907]
User ID: 501
Date/Time: 2023-02-05 22:39:10.132 -0800
OS Version: macOS 11.4 (20F71)
Report Version: 12
Anonymous UUID: D6189EF0-D250-E26B-895B-2A206E7F8F27
Sleep/Wake UUID: 3262C98F-A380-411B-A75B-2C2F4B701187
Time Awake Since Boot: 290000 seconds
Time Since Wake: 5100 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
*** Terminating app due to uncaught exception 'NSInternalInconsistencyException', reason: ': invalid parameter not satisfying: !isnan(newOrigin.y)'
terminating with uncaught exception of type NSException
abort() called
Application Specific Backtrace 1:
0 CoreFoundation 0x000000019da6cc78 __exceptionPreprocess + 240
1 libobjc.A.dylib 0x000000019d7950a8 objc_exception_throw + 60
2 CoreFoundation 0x000000019da97ed8 -[NSException description] + 0
3 Foundation 0x000000019e86f754 -[NSAssertionHandler handleFailureInMethod:object:file:lineNumber:description:] + 132
4 AppKit 0x00000001a0218180 -[NSView setFrameOrigin:] + 1432
5 AppKit 0x00000001a0bce3d8 -[NSTitlebarContainerView setFrameOrigin:] + 108
6 AppKit 0x00000001a0222604 -[NSView setFrame:] + 400
7 AppKit 0x00000001a0769dfc -[_NSFullScreenDetachedToolbarMenuBarCompanionController updateContentViewForMenuBarReveal] + 316
8 AppKit 0x00000001a0769c9c -[_NSFullScreenDetachedToolbarMenuBarCompanionController setMenuBarReveal:] + 204
9 AppKit 0x00000001a0cb4a84 __32+[_NSFullScreenSpace initialize]_block_invoke + 264
10 AppKit 0x00000001a080f9d8 __57+[NSCGSSpace addMenuBarRevealChangedNotificationHandler:]_block_invoke + 296
11 Foundation 0x000000019e769364 -[__NSObserver _doit:] + 348
12 CoreFoundation 0x000000019d9e3348 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 28
13 CoreFoundation 0x000000019da8528c ___CFXRegistrationPost_block_invoke + 52
14 CoreFoundation 0x000000019da851f8 _CFXRegistrationPost + 440
15 CoreFoundation 0x000000019d9b1e10 _CFXNotificationPost + 720
16 Foundation 0x000000019e73b620 -[NSNotificationCenter postNotificationName:object:userInfo:] + 64
17 SkyLight 0x00000001a23b5938 _ZL41post_coordinated_distributed_notification19CGSNotificationTypePvjS0_ + 512
18 SkyLight 0x00000001a21c0300 CGSPostLocalNotification + 268
19 SkyLight 0x00000001a21bfe74 _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ + 116
20 SkyLight 0x00000001a2462bb8 _ZN21CGSDatagramReadStream26dispatchMainQueueDatagramsEv + 228
21 SkyLight 0x00000001a2462ab4 ___ZN21CGSDatagramReadStream15mainQueueWakeupEv_block_invoke + 28
22 libdispatch.dylib 0x000000019d73e128 _dispatch_call_block_and_release + 32
23 libdispatch.dylib 0x000000019d73fec0 _dispatch_client_callout + 20
24 libdispatch.dylib 0x000000019d74e314 _dispatch_main_queue_callback_4CF + 884
25 CoreFoundation 0x000000019da2ed28 __CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__ + 16
26 CoreFoundation 0x000000019d9ed73c __CFRunLoopRun + 2524
27 CoreFoundation 0x000000019d9ec5e8 CFRunLoopRunSpecific + 600
28 HIToolbox 0x00000001a59072a0 RunCurrentEventLoopInMode + 292
29 HIToolbox 0x00000001a5907014 ReceiveNextEventCommon + 552
30 HIToolbox 0x00000001a5906dd4 _BlockUntilNextEventMatchingListInModeWithFilter + 72
31 AppKit 0x00000001a01db480 _DPSNextEvent + 836
32 AppKit 0x00000001a01d9e20 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1292
33 AppKit 0x00000001a01cbcac -[NSApplication run] + 596
34 libqcocoa.dylib 0x0000000126e1722c qt_plugin_instance + 51796
35 QtCore 0x000000012074f39c _ZN10QEventLoop4execE6QFlagsINS_17ProcessEventsFlagEE + 544
36 QtCore 0x00000001207463f4 _ZN16QCoreApplication4execEv + 128
37 QtWidgets.abi3.so 0x0000000122cae2b4 _ZL22meth_QApplication_execP7_objectS0_ + 96
38 Python 0x0000000102d171dc cfunction_call + 172
39 Python 0x0000000102cd4870 _PyObject_MakeTpCall + 360
40 Python 0x0000000102daabc8 call_function + 512
41 Python 0x0000000102da8208 _PyEval_EvalFrameDefault + 23108
42 Python 0x0000000102cd4ffc function_code_fastcall + 112
43 Python 0x0000000102cd6f60 method_vectorcall + 168
44 Python 0x0000000102daab68 call_function + 416
45 Python 0x0000000102da8208 _PyEval_EvalFrameDefault + 23108
46 Python 0x0000000102daba90 _PyEval_EvalCode + 2988
47 Python 0x0000000102cd4f80 _PyFunction_Vectorcall + 256
48 Python 0x0000000102daab68 call_function + 416
49 Python 0x0000000102da8284 _PyEval_EvalFrameDefault + 23232
50 Python 0x0000000102daba90 _PyEval_EvalCode + 2988
51 Python 0x0000000102da26fc PyEval_EvalCode + 80
52 Python 0x0000000102d9f4a4 builtin_exec + 672
53 Python 0x0000000102d1698c cfunction_vectorcall_FASTCALL + 232
54 Python 0x0000000102daab68 call_function + 416
55 Python 0x0000000102da8284 _PyEval_EvalFrameDefault + 23232
56 Python 0x0000000102daba90 _PyEval_EvalCode + 2988
57 Python 0x0000000102cd4f80 _PyFunction_Vectorcall + 256
58 Python 0x0000000102daab68 call_function + 416
59 Python 0x0000000102da8284 _PyEval_EvalFrameDefault + 23232
60 Python 0x0000000102daba90 _PyEval_EvalCode + 2988
61 Python 0x0000000102cd4f80 _PyFunction_Vectorcall + 256
62 Python 0x0000000102e05ea4 pymain_run_module + 200
63 Python 0x0000000102e054e8 Py_RunMain + 764
64 Python 0x0000000102e05d54 pymain_main + 340
65 Python 0x0000000102e05bf4 Py_Main + 36
66 ChimeraX 0x00000001028e3d54 main + 128
67 libdyld.dylib 0x000000019d90d450 start + 4
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x000000019d8bce68 __pthread_kill + 8
1 libsystem_pthread.dylib 0x000000019d8ef43c pthread_kill + 292
2 libsystem_c.dylib 0x000000019d7cee14 raise + 32
3 libsystem_platform.dylib 0x000000019d93ac44 _sigtramp + 56
4 libsystem_pthread.dylib 0x000000019d8ef43c pthread_kill + 292
5 libsystem_c.dylib 0x000000019d837460 abort + 104
6 libc++abi.dylib 0x000000019d8adb44 abort_message + 132
7 libc++abi.dylib 0x000000019d89ee54 demangling_terminate_handler() + 308
8 libobjc.A.dylib 0x000000019d797c94 _objc_terminate() + 144
9 libc++abi.dylib 0x000000019d8acf2c std::__terminate(void (*)()) + 20
10 libc++abi.dylib 0x000000019d8aceb8 std::terminate() + 48
11 libdispatch.dylib 0x000000019d73fed4 _dispatch_client_callout + 40
12 libdispatch.dylib 0x000000019d74e314 _dispatch_main_queue_callback_4CF + 884
13 com.apple.CoreFoundation 0x000000019da2ed28 __CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__ + 16
14 com.apple.CoreFoundation 0x000000019d9ed73c __CFRunLoopRun + 2524
15 com.apple.CoreFoundation 0x000000019d9ec5e8 CFRunLoopRunSpecific + 600
16 com.apple.HIToolbox 0x00000001a59072a0 RunCurrentEventLoopInMode + 292
17 com.apple.HIToolbox 0x00000001a5907014 ReceiveNextEventCommon + 552
18 com.apple.HIToolbox 0x00000001a5906dd4 _BlockUntilNextEventMatchingListInModeWithFilter + 72
19 com.apple.AppKit 0x00000001a01db480 _DPSNextEvent + 836
20 com.apple.AppKit 0x00000001a01d9e20 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1292
21 com.apple.AppKit 0x00000001a01cbcac -[NSApplication run] + 596
22 libqcocoa.dylib 0x0000000126e1722c 0x126e00000 + 94764
23 QtCore 0x000000012074f39c QEventLoop::exec(QFlags) + 544
24 QtCore 0x00000001207463f4 QCoreApplication::exec() + 128
25 QtWidgets.abi3.so 0x0000000122cae2b4 meth_QApplication_exec(_object*, _object*) + 96
26 org.python.python 0x0000000102d171dc cfunction_call + 172
27 org.python.python 0x0000000102cd4870 _PyObject_MakeTpCall + 360
28 org.python.python 0x0000000102daabc8 call_function + 512
29 org.python.python 0x0000000102da8208 _PyEval_EvalFrameDefault + 23108
30 org.python.python 0x0000000102cd4ffc function_code_fastcall + 112
31 org.python.python 0x0000000102cd6f60 method_vectorcall + 168
32 org.python.python 0x0000000102daab68 call_function + 416
33 org.python.python 0x0000000102da8208 _PyEval_EvalFrameDefault + 23108
34 org.python.python 0x0000000102daba90 _PyEval_EvalCode + 2988
35 org.python.python 0x0000000102cd4f80 _PyFunction_Vectorcall + 256
36 org.python.python 0x0000000102daab68 call_function + 416
37 org.python.python 0x0000000102da8284 _PyEval_EvalFrameDefault + 23232
38 org.python.python 0x0000000102daba90 _PyEval_EvalCode + 2988
39 org.python.python 0x0000000102da26fc PyEval_EvalCode + 80
40 org.python.python 0x0000000102d9f4a4 builtin_exec + 672
41 org.python.python 0x0000000102d1698c cfunction_vectorcall_FASTCALL + 232
42 org.python.python 0x0000000102daab68 call_function + 416
43 org.python.python 0x0000000102da8284 _PyEval_EvalFrameDefault + 23232
44 org.python.python 0x0000000102daba90 _PyEval_EvalCode + 2988
45 org.python.python 0x0000000102cd4f80 _PyFunction_Vectorcall + 256
46 org.python.python 0x0000000102daab68 call_function + 416
47 org.python.python 0x0000000102da8284 _PyEval_EvalFrameDefault + 23232
48 org.python.python 0x0000000102daba90 _PyEval_EvalCode + 2988
49 org.python.python 0x0000000102cd4f80 _PyFunction_Vectorcall + 256
50 org.python.python 0x0000000102e05ea4 pymain_run_module + 200
51 org.python.python 0x0000000102e054e8 Py_RunMain + 764
52 org.python.python 0x0000000102e05d54 pymain_main + 340
53 org.python.python 0x0000000102e05bf4 Py_Main + 36
54 edu.ucsf.cgl.ChimeraX 0x00000001028e3d54 main + 128
55 libdyld.dylib 0x000000019d90d450 start + 4
Thread 1:
0 libsystem_kernel.dylib 0x000000019d8b8548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019d8efdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103d69b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 2:
0 libsystem_kernel.dylib 0x000000019d8b8548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019d8efdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103d69b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 3:
0 libsystem_kernel.dylib 0x000000019d8b8548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019d8efdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103d69b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 4:
0 libsystem_kernel.dylib 0x000000019d8b8548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019d8efdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103d69b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 5:
0 libsystem_kernel.dylib 0x000000019d8b8548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019d8efdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103d69b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 6:
0 libsystem_kernel.dylib 0x000000019d8b8548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019d8efdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103d69b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 7:
0 libsystem_kernel.dylib 0x000000019d8b8548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019d8efdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103d69b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 8:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x000000019d8bfee8 kevent64 + 8
1 QtWebEngineCore 0x0000000170f997c8 0x16d980000 + 56727496
2 QtWebEngineCore 0x0000000170f996f8 0x16d980000 + 56727288
3 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
4 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
5 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
6 QtWebEngineCore 0x0000000170f2a1a8 0x16d980000 + 56271272
7 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
8 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
9 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 9:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f3566c 0x16d980000 + 56317548
4 QtWebEngineCore 0x0000000170f360f4 0x16d980000 + 56320244
5 QtWebEngineCore 0x0000000170f35d20 0x16d980000 + 56319264
6 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
7 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 10:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f3566c 0x16d980000 + 56317548
4 QtWebEngineCore 0x0000000170f360f4 0x16d980000 + 56320244
5 QtWebEngineCore 0x0000000170f35c9c 0x16d980000 + 56319132
6 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
7 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 11:: Chrome_IOThread
0 libsystem_kernel.dylib 0x000000019d8bfee8 kevent64 + 8
1 QtWebEngineCore 0x0000000170f997c8 0x16d980000 + 56727496
2 QtWebEngineCore 0x0000000170f996f8 0x16d980000 + 56727288
3 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
4 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
5 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
6 QtWebEngineCore 0x0000000170035c04 0x16d980000 + 40590340
7 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
8 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
9 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f6d3b0 0x16d980000 + 56546224
4 QtWebEngineCore 0x0000000170eb75a0 0x16d980000 + 55801248
5 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
6 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
7 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
8 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
9 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
10 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 13:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x000000019d8b8548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000019d8efdac _pthread_cond_wait + 1248
2 QtWebEngineCore 0x0000000170f66048 0x16d980000 + 56516680
3 QtWebEngineCore 0x0000000172b1afe4 0x16d980000 + 85569508
4 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
5 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f6d3b0 0x16d980000 + 56546224
4 QtWebEngineCore 0x0000000170eb75a0 0x16d980000 + 55801248
5 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
6 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
7 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
8 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
9 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
10 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x000000019d8bfee8 kevent64 + 8
1 QtWebEngineCore 0x0000000170f997c8 0x16d980000 + 56727496
2 QtWebEngineCore 0x0000000170f996f8 0x16d980000 + 56727288
3 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
4 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
5 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
6 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
7 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
8 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
9 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 16:: VizCompositorThread
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f6d3b0 0x16d980000 + 56546224
4 QtWebEngineCore 0x0000000170eb75a0 0x16d980000 + 55801248
5 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
6 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
7 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
8 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
9 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
10 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f6d3b0 0x16d980000 + 56546224
4 QtWebEngineCore 0x0000000170eb75a0 0x16d980000 + 55801248
5 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
6 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
7 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
8 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
9 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
10 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 18:: NetworkService
0 libsystem_kernel.dylib 0x000000019d8bfee8 kevent64 + 8
1 QtWebEngineCore 0x0000000170f997c8 0x16d980000 + 56727496
2 QtWebEngineCore 0x0000000170f996f8 0x16d980000 + 56727288
3 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
4 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
5 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
6 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
7 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
8 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
9 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f6d3b0 0x16d980000 + 56546224
4 QtWebEngineCore 0x0000000170eb75a0 0x16d980000 + 55801248
5 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
6 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
7 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
8 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
9 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
10 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 20:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f3566c 0x16d980000 + 56317548
4 QtWebEngineCore 0x0000000170f360f4 0x16d980000 + 56320244
5 QtWebEngineCore 0x0000000170f35d78 0x16d980000 + 56319352
6 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
7 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f6d3b0 0x16d980000 + 56546224
4 QtWebEngineCore 0x0000000170eb75a0 0x16d980000 + 55801248
5 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
6 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
7 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
8 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
9 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
10 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 22:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 com.apple.CoreFoundation 0x000000019d9eed50 __CFRunLoopServiceMachPort + 372
3 com.apple.CoreFoundation 0x000000019d9ed21c __CFRunLoopRun + 1212
4 com.apple.CoreFoundation 0x000000019d9ec5e8 CFRunLoopRunSpecific + 600
5 com.apple.AppKit 0x00000001a035a054 _NSEventThread + 196
6 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
7 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 23:: MemoryInfra
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f6d3b0 0x16d980000 + 56546224
4 QtWebEngineCore 0x0000000170eb75a0 0x16d980000 + 55801248
5 QtWebEngineCore 0x0000000170f20f6c 0x16d980000 + 56233836
6 QtWebEngineCore 0x0000000170ee44bc 0x16d980000 + 55985340
7 QtWebEngineCore 0x0000000170f40d88 0x16d980000 + 56364424
8 QtWebEngineCore 0x0000000170f40f10 0x16d980000 + 56364816
9 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
10 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 24:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f3566c 0x16d980000 + 56317548
4 QtWebEngineCore 0x0000000170f35e84 0x16d980000 + 56319620
5 QtWebEngineCore 0x0000000170f35cc8 0x16d980000 + 56319176
6 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
7 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 25:
0 libsystem_pthread.dylib 0x000000019d8ea5cc start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x000000019d8ea5cc start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x000000019d8ea5cc start_wqthread + 0
Thread 28:
0 libsystem_pthread.dylib 0x000000019d8ea5cc start_wqthread + 0
Thread 29:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f3566c 0x16d980000 + 56317548
4 QtWebEngineCore 0x0000000170f360f4 0x16d980000 + 56320244
5 QtWebEngineCore 0x0000000170f35d20 0x16d980000 + 56319264
6 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
7 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 30:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x000000019d8b4dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000019d8b5184 mach_msg + 76
2 QtWebEngineCore 0x0000000170f6d5e4 0x16d980000 + 56546788
3 QtWebEngineCore 0x0000000170f3566c 0x16d980000 + 56317548
4 QtWebEngineCore 0x0000000170f360f4 0x16d980000 + 56320244
5 QtWebEngineCore 0x0000000170f35c9c 0x16d980000 + 56319132
6 QtWebEngineCore 0x0000000170f66be4 0x16d980000 + 56519652
7 libsystem_pthread.dylib 0x000000019d8ef878 _pthread_start + 320
8 libsystem_pthread.dylib 0x000000019d8ea5e0 thread_start + 8
Thread 31:
0 libsystem_pthread.dylib 0x000000019d8ea5cc start_wqthread + 0
Thread 32:
0 libsystem_pthread.dylib 0x000000019d8ea5cc start_wqthread + 0
Thread 33:
0 libsystem_pthread.dylib 0x000000019d8ea5cc start_wqthread + 0
Thread 0 crashed with ARM Thread State (64-bit):
x0: 0x0000000000000000 x1: 0x0000000000000000 x2: 0x0000000000000001 x3: 0x000000019d937ea5
x4: 0x0000000128057c18 x5: 0xeba68d244d78e0cc x6: 0x000000000000006e x7: 0xffffffff00007b00
x8: 0x621fc5fee56932e4 x9: 0x621fc5ffe7ad0fa4 x10: 0x0000000000001bba x11: 0x000000021470fb46
x12: 0x000000021470fb46 x13: 0x0000000000000004 x14: 0x0000000000000881 x15: 0x000000008000001f
x16: 0x0000000000000148 x17: 0x000000020c246e90 x18: 0x000000014110b3bc x19: 0x0000000000000006
x20: 0x0000000102c43d40 x21: 0x0000000000000103 x22: 0x0000000102c43e20 x23: 0x0000000000000114
x24: 0x0000000000000000 x25: 0x0000000102c43e20 x26: 0x000000000000000f x27: 0x0000000000000000
x28: 0x0000000002ffffff fp: 0x0000000128057b50 lr: 0x000000019d8ef43c
sp: 0x0000000128057b30 pc: 0x000000019d8bce68 cpsr: 0x40000000
far: 0x0000000102f63277 esr: 0x56000080
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0x1df8f7000 - 0x1df8fffff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x1df900000 - 0x1df938fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x1df939000 - 0x1df971fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x1df972000 - 0x1dfadefff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x1dfadf000 - 0x1dfae9fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x1dfaea000 - 0x1dfc54fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x1dfc55000 - 0x1dfc79fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x1dfc7a000 - 0x1dfcd9fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x1e0757000 - 0x1e075efff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x1e075f000 - 0x1e0845fff com.apple.audio.AVFAudio (1.0 - 477.87) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x1e2d23000 - 0x1e2d2efff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x1e8f08000 - 0x1e8f13fff com.apple.SymptomAnalytics (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x1e912d000 - 0x1e9146fff com.apple.SymptomPresentationFeed (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x1f0d1c000 - 0x1f0d23fff libRosetta.dylib (203.46) /usr/lib/libRosetta.dylib
0x28d228000 - 0x28d243fff com.apple.security.csparser (3.0 - 59754.120.12) /System/Library/Frameworks/Security.framework/PlugIns/csparser.bundle/Contents/MacOS/csparser
0x28f9c8000 - 0x28f9d7fff +numpy_formathandler.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/numpy_formathandler.cpython-39-darwin.so
0x28f9f0000 - 0x28f9f7fff +nones_formathandler.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/nones_formathandler.cpython-39-darwin.so
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 3264K 6
CG image 368K 17
CoreAnimation 288K 18
CoreGraphics 32K 2
CoreUI image data 3632K 27
Foundation 16K 1
Kernel Alloc Once 32K 1
MALLOC 346.3M 73
MALLOC guard page 192K 10
MALLOC_MEDIUM (reserved) 928.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 64K 3
OpenGL GLSL 384K 4
STACK GUARD 528K 33
Stack 160.2M 34
Stack Guard 56.0M 1
VM_ALLOCATE 151.2M 258
VM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated)
__AUTH 1029K 266
__AUTH_CONST 15.2M 456
__DATA 18.3M 580
__DATA_CONST 25.0M 583
__DATA_DIRTY 1813K 213
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 517.3M 136
__OBJC_CONST 3308K 257
__OBJC_RO 75.0M 1
__OBJC_RW 2576K 1
__TEXT 562.9M 604
__UNICODE 588K 1
mapped file 282.1M 67
shared memory 3200K 24
=========== ======= =======
TOTAL 3.6G 3694
TOTAL, minus reserved VM space 2.2G 3694
===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/tjgolobic/Downloads/PAPA1_CARPA_cut.eq.1.pdb
Chain information for PAPA1_CARPA_cut.eq.1.pdb #1
---
Chain | Description
A | No description available
> open /Users/tjgolobic/Downloads/DCAP_0515_full_m1_cut.eq.1.pdb
Chain information for DCAP_0515_full_m1_cut.eq.1.pdb #2
---
Chain | Description
A | No description available
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.6.4
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 6723.120.36
OS Loader Version: 6723.120.36
Software:
System Software Overview:
System Version: macOS 11.4 (20F71)
Kernel Version: Darwin 20.5.0
Time since boot: 19 days 3:05
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History
(3)
| Cc: |
Tom Goddard Zach Pearson added
|
| Component: |
Unassigned → Window Toolkit
|
| Owner: |
set to Eric Pettersen
|
| Platform: |
→ all
|
| Project: |
→ ChimeraX
|
| Status: |
new → accepted
|
| Summary: |
ChimeraX bug report submission → invalid parameter not satisfying: !isnan(newOrigin.y)
|
| Resolution: |
→ can't reproduce
|
| Status: |
accepted → closed
|
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Hi TJ,
--Eric