![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8563 closed defect (nonchimerax)
Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.3rc202111192158 (2021-11-19 21:58:21 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x000000010d2e8dc0 (most recent call first):
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 2704 in draw_elements
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1696 in draw
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 824 in _draw_geometry
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 759 in draw_self
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 752 in draw
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1512 in _draw_multiple
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1499 in draw_opaque
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 235 in _draw_scene
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 165 in draw
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 276 in render
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 112 in _redraw
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 134 in invoke
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 217 in _activate
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 186 in activate
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 354 in activate_trigger
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 89 in draw_new_frame
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/_l/0x4v6l193l19pjgdq16vhjm00000gn/T/AppTranslocation/205A29EE-C725-4BF6-AE74-E7BC3C9B1F2F/d/ChimeraX-1.3-rc2021.11.19.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [15647]
Path: /Volumes/VOLUME/*/ChimeraX-1.3-rc2021.11.19.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [15647]
User ID: 501
Date/Time: 2023-02-24 20:56:29.214 +0000
OS Version: Mac OS X 10.15.7 (19H2026)
Report Version: 12
Bridge OS Version: 7.0 (20P411)
Anonymous UUID: B53A8187-D0BF-351C-B34E-B95E49425457
Sleep/Wake UUID: 739F6E43-DC2C-4AFB-ACA5-496B4E99716A
Time Awake Since Boot: 41000 seconds
Time Since Wake: 4700 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6a77532a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6a831e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6a68c93e raise + 26
3 libsystem_platform.dylib 0x00007fff6a8265fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff6a6fc808 abort + 120
6 libGPUSupportMercury.dylib 0x00007fff51c630a5 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff51c5a18f gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff27c15b28 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff51c5b6a1 gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff26e83280 IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff26e8306c intelSubmitCommands + 171
12 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff26e76708 updateDispatch + 6403
13 GLEngine 0x00007fff3b3d274c gleDoDrawDispatchCoreGL3 + 693
14 GLEngine 0x00007fff3b3a6fb6 glDrawElementsInstanced_ACC_GL3Exec + 290
15 libffi.dylib 0x00007fff683cf905 ffi_call_unix64 + 85
16 libffi.dylib 0x00007fff683cf244 ffi_call_int + 694
17 _ctypes.cpython-39-darwin.so 0x000000010b678ead _ctypes_callproc + 1037
18 _ctypes.cpython-39-darwin.so 0x000000010b672c36 PyCFuncPtr_call + 1206
19 org.python.python 0x0000000102c4d6cc _PyObject_Call + 140
20 org.python.python 0x0000000102ca5d46 slot_tp_call + 230
21 wrapper.cpython-39-darwin.so 0x0000000123f442ae __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 830
22 latebind.cpython-39-darwin.so 0x0000000123fa049e __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 158
23 org.python.python 0x0000000102c4d17d _PyObject_MakeTpCall + 365
24 org.python.python 0x0000000102d2561c call_function + 876
25 org.python.python 0x0000000102d22ab3 _PyEval_EvalFrameDefault + 25219
26 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
27 org.python.python 0x0000000102c4d8d1 _PyFunction_Vectorcall + 289
28 org.python.python 0x0000000102d2558c call_function + 732
29 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
30 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
31 org.python.python 0x0000000102d2558c call_function + 732
32 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
33 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
34 org.python.python 0x0000000102c4d8d1 _PyFunction_Vectorcall + 289
35 org.python.python 0x0000000102c4f98a method_vectorcall + 202
36 org.python.python 0x0000000102d2558c call_function + 732
37 org.python.python 0x0000000102d22be1 _PyEval_EvalFrameDefault + 25521
38 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
39 org.python.python 0x0000000102d2558c call_function + 732
40 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
41 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
42 org.python.python 0x0000000102d2558c call_function + 732
43 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
44 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
45 org.python.python 0x0000000102d2558c call_function + 732
46 org.python.python 0x0000000102d22b4b _PyEval_EvalFrameDefault + 25371
47 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
48 org.python.python 0x0000000102d2558c call_function + 732
49 org.python.python 0x0000000102d22b4b _PyEval_EvalFrameDefault + 25371
50 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
51 org.python.python 0x0000000102d2558c call_function + 732
52 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
53 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
54 org.python.python 0x0000000102c4d8d1 _PyFunction_Vectorcall + 289
55 org.python.python 0x0000000102d2558c call_function + 732
56 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
57 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
58 org.python.python 0x0000000102c4f98a method_vectorcall + 202
59 org.python.python 0x0000000102d2558c call_function + 732
60 org.python.python 0x0000000102d22ab3 _PyEval_EvalFrameDefault + 25219
61 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
62 org.python.python 0x0000000102c4d8d1 _PyFunction_Vectorcall + 289
63 org.python.python 0x0000000102c4f98a method_vectorcall + 202
64 org.python.python 0x0000000102d2558c call_function + 732
65 org.python.python 0x0000000102d22ab3 _PyEval_EvalFrameDefault + 25219
66 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
67 org.python.python 0x0000000102d2558c call_function + 732
68 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
69 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
70 org.python.python 0x0000000102d2558c call_function + 732
71 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
72 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
73 org.python.python 0x0000000102d2558c call_function + 732
74 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
75 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
76 org.python.python 0x0000000102c4d8d1 _PyFunction_Vectorcall + 289
77 org.python.python 0x0000000102d2558c call_function + 732
78 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
79 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
80 org.python.python 0x0000000102d2558c call_function + 732
81 org.python.python 0x0000000102d22a92 _PyEval_EvalFrameDefault + 25186
82 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
83 org.python.python 0x0000000102c4f9d2 method_vectorcall + 274
84 QtCore.abi3.so 0x000000010bff5957 PyQtSlot::call(_object*, _object*) const + 39
85 QtCore.abi3.so 0x000000010bff5866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
86 QtCore.abi3.so 0x000000010bff6455 PyQtSlotProxy::unislot(void**) + 85
87 QtCore.abi3.so 0x000000010bff63ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
88 QtCore 0x000000010c3d9f6e void doActivate(QObject*, int, void**) + 1118
89 QtCore 0x000000010c3e34c2 QTimer::timerEvent(QTimerEvent*) + 98
90 QtCore.abi3.so 0x000000010bedebf9 sipQTimer::timerEvent(QTimerEvent*) + 121
91 QtCore 0x000000010c3d185f QObject::event(QEvent*) + 111
92 QtCore.abi3.so 0x000000010bedea7a sipQTimer::event(QEvent*) + 186
93 QtWidgets 0x00000001141549ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
94 QtWidgets 0x0000000114155e11 QApplication::notify(QObject*, QEvent*) + 497
95 QtWidgets.abi3.so 0x000000010ca37db9 sipQApplication::notify(QObject*, QEvent*) + 233
96 QtCore 0x000000010c3a6a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
97 QtCore 0x000000010c40c35f QTimerInfoList::activateTimers() + 991
98 libqcocoa.dylib 0x00000001220aa8f2 QCocoaEventDispatcherPrivate::activateTimersSourceCallback(void*) + 18
99 com.apple.CoreFoundation 0x00007fff309a8f92 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
100 com.apple.CoreFoundation 0x00007fff309a8f31 __CFRunLoopDoSource0 + 103
101 com.apple.CoreFoundation 0x00007fff309a8d4b __CFRunLoopDoSources0 + 209
102 com.apple.CoreFoundation 0x00007fff309a7a7a __CFRunLoopRun + 927
103 com.apple.CoreFoundation 0x00007fff309a707e CFRunLoopRunSpecific + 462
104 com.apple.HIToolbox 0x00007fff2f5d3aad RunCurrentEventLoopInMode + 292
105 com.apple.HIToolbox 0x00007fff2f5d37c5 ReceiveNextEventCommon + 584
106 com.apple.HIToolbox 0x00007fff2f5d3569 _BlockUntilNextEventMatchingListInModeWithFilter + 64
107 com.apple.AppKit 0x00007fff2dc1c3c9 _DPSNextEvent + 883
108 com.apple.AppKit 0x00007fff2dc1ac10 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
109 com.apple.AppKit 0x00007fff2dc0c91e -[NSApplication run] + 658
110 libqcocoa.dylib 0x00000001220ab62f QCocoaEventDispatcher::processEvents(QFlags) + 2495
111 QtCore 0x000000010c3a2acf QEventLoop::exec(QFlags) + 431
112 QtCore 0x000000010c3a7042 QCoreApplication::exec() + 130
113 QtWidgets.abi3.so 0x000000010cb29702 meth_QApplication_exec_(_object*, _object*) + 82
114 org.python.python 0x0000000102c8c06d cfunction_call + 125
115 org.python.python 0x0000000102c4d17d _PyObject_MakeTpCall + 365
116 org.python.python 0x0000000102d2561c call_function + 876
117 org.python.python 0x0000000102d22ab3 _PyEval_EvalFrameDefault + 25219
118 org.python.python 0x0000000102c4d948 function_code_fastcall + 104
119 org.python.python 0x0000000102c4f98a method_vectorcall + 202
120 org.python.python 0x0000000102d2558c call_function + 732
121 org.python.python 0x0000000102d22ab3 _PyEval_EvalFrameDefault + 25219
122 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
123 org.python.python 0x0000000102c4d8d1 _PyFunction_Vectorcall + 289
124 org.python.python 0x0000000102d2558c call_function + 732
125 org.python.python 0x0000000102d22b4b _PyEval_EvalFrameDefault + 25371
126 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
127 org.python.python 0x0000000102d1c70b PyEval_EvalCode + 139
128 org.python.python 0x0000000102d19592 builtin_exec + 626
129 org.python.python 0x0000000102c8b86a cfunction_vectorcall_FASTCALL + 218
130 org.python.python 0x0000000102d2558c call_function + 732
131 org.python.python 0x0000000102d22b4b _PyEval_EvalFrameDefault + 25371
132 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
133 org.python.python 0x0000000102c4d8d1 _PyFunction_Vectorcall + 289
134 org.python.python 0x0000000102d2558c call_function + 732
135 org.python.python 0x0000000102d22b4b _PyEval_EvalFrameDefault + 25371
136 org.python.python 0x0000000102d26283 _PyEval_EvalCode + 2611
137 org.python.python 0x0000000102c4d8d1 _PyFunction_Vectorcall + 289
138 org.python.python 0x0000000102d8be20 pymain_run_module + 208
139 org.python.python 0x0000000102d8b537 Py_RunMain + 1431
140 org.python.python 0x0000000102d8bb3f pymain_main + 223
141 org.python.python 0x0000000102d8ba4b Py_Main + 43
142 edu.ucsf.cgl.ChimeraX 0x0000000102c0adc8 main + 120
143 libdyld.dylib 0x00007fff6a62dcc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff6a771872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6a832425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x00000001038daa9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff6a771872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6a832425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x00000001038daa9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff6a771872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6a832425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x00000001038daa9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff6a777b86 kevent64 + 10
1 QtWebEngineCore 0x000000011794fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011794fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x00000001178e3a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 5:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001178ed778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x00000001178ee150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x00000001178edc44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 6:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6a777b86 kevent64 + 10
1 QtWebEngineCore 0x000000011794fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011794fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011b81cf06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 7:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001179452cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011786d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 8:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001178ed778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x00000001178ee150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x00000001178edcd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 9:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff6a771872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6a832425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x000000011793ce18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x0000000118bf45f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 10:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011786d20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 11:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6a777b86 kevent64 + 10
1 QtWebEngineCore 0x000000011794fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011794fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001179452cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011786d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 13:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001179452cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011786d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001179452cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011786d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 15:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001179452cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001178ed76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x00000001178ee150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x00000001178edd34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 16:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001179452cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011786d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001179452cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011786d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001178d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011789c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001178f7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 18:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff309a9135 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff309a7c02 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff309a707e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2ddbdbf4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 19:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6a76edea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a76f160 mach_msg + 60
2 QtWebEngineCore 0x0000000117945492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001179452cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001178ed76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x00000001178ede3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x00000001178edc74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x0000000117940e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6a832109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a82db8b thread_start + 15
Thread 20:
0 libsystem_pthread.dylib 0x00007fff6a82db68 start_wqthread + 0
Thread 21:
0 libsystem_pthread.dylib 0x00007fff6a82db68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010d2e8dc0 rcx: 0x00007f8578067418 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007f8578067440 rsp: 0x00007f8578067418
r8: 0x00007f8578067f48 r9: 0x59676a0993eff68a r10: 0x000000010d2e8dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007f85881db3c8 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff6a77532a rfl: 0x0000000000000246 cr2: 0x00007f85780668c0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff6a823000 - 0x7fff6a82bfef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6a82c000 - 0x7fff6a836fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6a837000 - 0x7fff6a83bff3 libsystem_sandbox.dylib (1217.141.9) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6a83c000 - 0x7fff6a83efff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6a83f000 - 0x7fff6a846ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6a847000 - 0x7fff6a85dff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff6a85f000 - 0x7fff6a864ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6a865000 - 0x7fff6a89affe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 16
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 196119
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=2.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.9G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 768K 6
Activity Tracing 256K 1
CG backing stores 1328K 4
CG image 212K 24
CoreAnimation 308K 36
CoreGraphics 8K 1
CoreImage 32K 4
CoreServices 260K 2
CoreUI image data 2964K 30
Dispatch continuations 16.0M 1
Foundation 24K 2
Kernel Alloc Once 8K 1
MALLOC 1.7G 544
MALLOC guard page 48K 10
MALLOC_MEDIUM (reserved) 664.0M 7 reserved VM address space (unallocated)
Mach message 24K 2
OpenGL GLSL 384K 5
STACK GUARD 84K 21
Stack 131.2M 22
Stack Guard 56.0M 1
VM_ALLOCATE 380.1M 152
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 53.8M 548
__DATA_CONST 76K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 480.2M 145
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 546.2M 514
__UNICODE 564K 1
mapped file 394.9M 54
shared memory 2848K 24
=========== ======= =======
TOTAL 4.5G 2172
TOTAL, minus reserved VM space 3.8G 2172
System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: BANK 0/ChannelA-DIMM0, 16 GB, LPDDR4X, 3733 MHz, Micron, -
Memory Module: BANK 2/ChannelB-DIMM0, 16 GB, LPDDR4X, 3733 MHz, Micron, -
USB Device: USB 3.1 Bus
USB Device: USB3.0 Hub
USB Device: USB 3.1 Bus
USB Device: USB2.0 Hub
USB Device: USB-C Digital AV Multiport Adapter
USB Device: Apple T2 Bus
USB Device: Touch Bar Backlight
USB Device: Touch Bar Display
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 86.0
Thunderbolt Bus: MacBook Pro, Apple Inc., 86.0
Model: MacBookPro16,2, BootROM 1916.40.8.0.0 (iBridge: 20.16.411.0.0,0), 4 processors, Quad-Core Intel Core i7, 2.3 GHz, 32 GB, SMC
Graphics: kHW_IntelIrisPlusGraphicsItem, Intel Iris Plus Graphics, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Oct 28 2020 14:13:29 version 9.30.357.42.32.5.48 FWID 01-767f6cce
Bluetooth: Version 7.0.6f8, 3 services, 27 devices, 1 incoming serial ports
===== Log before crash start =====
UCSF ChimeraX version: 1.3rc202111192158 (2021-11-19)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/jjpeter/Downloads/6r6p.cif
6r6p.cif title:
Structure of XBP1u-paused ribosome nascent chain complex (rotated state) [more
info...]
Chain information for 6r6p.cif #1
---
Chain | Description | UniProt
0 | eS31 | G1SK22_RABIT
1 | X-box-binding protein 1 | XBP1_HUMAN
2 | A/P-tRNA |
3 | P/E-tRNA |
4 | mRNA |
5 | 28S ribosomal RNA |
6 | ribosomal protein RACK1 | G1SJB4_RABIT
7 | 5S ribosomal RNA |
8 | 5.8S ribosomal RNA |
9 | uS14 | G1U0Q2_RABIT
A | uL2 | G1TT27_RABIT
AA | 40S ribosomal protein S30 | G1T8A2_RABIT
B | uL3 | G1TL06_RABIT
BB | Ribosomal protein S5 | G1TFM5_RABIT
C | uL4 | G1SVW5_RABIT
CC | 40S ribosomal protein S8 | G1TJW1_RABIT
D | 60S ribosomal protein L5 | G1SYJ6_RABIT
DD | Ribosomal protein S3 | G1TNM3_RABIT
E | 60S ribosomal protein L6 | G1TG04_RABIT
EE | Ribosomal protein S11 | G1TRM4_RABIT
F | uL30 | G1SV32_RABIT
FF | Ribosomal protein S28 | G1TIB4_RABIT
G | eL8 | G1STW0_RABIT
GG | uS10 |
H | uL6 | G1TX33_RABIT
HH | eS21 |
I | Ribosomal protein L10 (Predicted) | B7NZQ2_RABIT
II | uS13 | G1SZI5_RABIT
J | uL5 | G1TUB8_RABIT
JJ | 40S ribosomal protein S27 | G1TZ76_RABIT
K | 18S rRNA |
L | 60S ribosomal protein L13 | G1TPV0_RABIT
M | Ribosomal protein L14 | U3KNW6_RABIT
MM | uS11 |
N | Ribosomal protein L15 | G1T0C1_RABIT
NN | eS24 |
O | uL13 |
OO | ribosomal protein eS25 | G1TDB3_RABIT
P | uL22 | G1TVT6_RABIT
PP | eS19 | G1TN62_RABIT
Q | eL18 | G1TX70_RABIT
QQ | ribosomal protein uS15 | G1SP51_RABIT
R | eL19 |
RR | 40S ribosomal protein S12 | G1SFR8_RABIT
S | eL20 |
SS | eS10 | G1TPV3_RABIT
T | eL21 | G1SHQ2_RABIT
TT | Ribosomal protein S15a | G1TG89_RABIT
U | Ribosomal protein L22 | G1TSG1_RABIT
UU | Ribosomal protein S16 | G1SGX4_RABIT
V | uL14 | G1T6D1_RABIT
VV | Ribosomal protein S23 | G1SZ47_RABIT
W | Ribosomal protein L24 | G1SE28_RABIT
X | uL23 | G1SE76_RABIT
XX | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT
Y | Ribosomal protein L26 | G1SQH0_RABIT
YY | eS17 | G1TU13_RABIT
Z | 60S ribosomal protein L27 | G1TXF6_RABIT
ZZ | eS26 |
a | uL15 | G1SNY0_RABIT
b | 60S ribosomal protein L29 | G1TN82_RABIT
c | eL30 |
d | eL31 | G1SHG0_RABIT
e | eL32 | G1TUN8_RABIT
f | eL33 | G1SF08_RABIT
g | eL34 | G1U945_RABIT
h | uL29 | G1SIT5_RABIT
i | 60S ribosomal protein L36 | G1TTQ5_RABIT
j | Ribosomal protein L37 | U3KPD5_RABIT
k | eL38 |
l | ribosomal protein eL39 | G1SYU7_RABIT
m | eL40 |
n | 60s ribosomal protein l41 | A0A087WNH4_RABIT
o | eL42 | G1T040_RABIT
p | ribosomal protein eL43 | G1SY53_RABIT
q | uS2 |
r | eL28 | G1U7L1_RABIT
s | 60S acidic ribosomal protein P0 | G1U6N2_RABIT
t | Ribosomal protein L12 | G1SMR7_RABIT
u | 40S ribosomal protein S3a | G1SS70_RABIT
v | uS5 |
w | S29 | G1U7M4_RABIT
x | 40S ribosomal protein S4 | G1TK17_RABIT
y | 40S ribosomal protein S7 | G1SVB0_RABIT
z | 40S ribosomal protein S6 | G1TM55_RABIT
Non-standard residues in 6r6p.cif #1
---
MG — magnesium ion
ZN — zinc ion
> hide atoms
> show cartoons
> set bgColor white
> set silhouettes true
> select #1/o
852 atoms, 864 bonds, 3 pseudobonds, 105 residues, 2 models selected
> select #1/0
555 atoms, 567 bonds, 68 residues, 1 model selected
> sequence chain #1/0
Alignment identifier is 1/0
> select #1/1
204 atoms, 216 bonds, 24 residues, 1 model selected
> sequence chain #1/1
Alignment identifier is 1/1
> view sel
> ui tool show "Side View"
> ~select
Nothing selected
> view
> open /Users/jjpeter/Downloads/ligase_bound_60S_model.pdb
Chain information for ligase_bound_60S_model.pdb #2
---
Chain | Description
5 | No description available
7 | No description available
8 | No description available
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
o | No description available
p | No description available
r | No description available
s | No description available
> hide atoms
> show cartoons
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6r6p.cif, chain B (#1) with ligase_bound_60S_model.pdb, chain B
(#2), sequence alignment score = 1885.7
RMSD between 385 pruned atom pairs is 0.575 angstroms; (across all 394 pairs:
0.826)
> select #1/1
204 atoms, 216 bonds, 24 residues, 1 model selected
> view sel
> select #2/s
206 atoms, 206 bonds, 13 residues, 1 model selected
> select #1/1 #2/s
410 atoms, 422 bonds, 37 residues, 2 models selected
> set transparency 10 targetc
Expected a keyword
> set transparency 10 target c
Expected a keyword
> set transparency 10 target c
Expected a keyword
> settransparency 10 target c
Unknown command: settransparency 10 target c
> transparency 10 target c
> select #1/1 #2/s
410 atoms, 422 bonds, 37 residues, 2 models selected
> transparency 90 target c
> select #1/1 #2/s
410 atoms, 422 bonds, 37 residues, 2 models selected
> transparency 0 target c
> transparency 90 target c
> select #1/1 #2/s
410 atoms, 422 bonds, 37 residues, 2 models selected
> transparency sel 90 target c
> transparency sel 0 target c
> ~select
Nothing selected
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3rc202111192158 (2021-11-19)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.7.28
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
Boot ROM Version: 1916.40.8.0.0 (iBridge: 20.16.411.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H2026)
Kernel Version: Darwin 19.6.0
Time since boot: 1:03
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
DELL U2410:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: F525M25VAELL
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: Apple USB-C Digital AV Adapter
Automatically Adjust Brightness: No
Adapter Firmware Version: 2.35
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.2
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111192158
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
MolecularDynamicsViewer: 1.4
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics |
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Apple Intel graphics driver crash. Two displays.