![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8385 closed defect (nonchimerax)
Graphics crash, macOS 11.7, NVIDIA GeForce GT 750M
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x000000011a571e00 (most recent call first):
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1178 in draw_background
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/camera.py", line 184 in draw_background
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 227 in _draw_scene
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 177 in draw
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 288 in render
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 113 in _redraw
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 134 in invoke
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 217 in _activate
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 186 in activate
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 354 in activate_trigger
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 89 in draw_new_frame
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/7g/4rynhbpd1tjfx0x52hjc4vq80000gn/T/AppTranslocation/B4DB0299-FB9B-401D-B605-7AEED85BC7AA/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [74990]
Path: /private/var/folders/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.5.0 (1.5.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [74990]
User ID: 501
Date/Time: 2023-01-30 08:42:32.709 +0100
OS Version: macOS 11.7 (20G817)
Report Version: 12
Anonymous UUID: 7E1B08F1-C704-5F53-CDAB-D128905E86F9
Sleep/Wake UUID: 0A9CA884-F385-43CF-B3C8-204A5087D934
Time Awake Since Boot: 180000 seconds
Time Since Wake: 770 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x0000002b
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff207b491e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff207e35bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff206c7bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20828d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff20738406 abort + 125
6 libGPUSupportMercury.dylib 0x00007fff46731096 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff4672821c gpusGenerateCrashLog + 89
8 com.apple.GeForceGLDriver 0x00007fff6181e9d0 0x7fff61519000 + 3168720
9 libGPUSupportMercury.dylib 0x00007fff4672972d gpusSubmitDataBuffers + 490
10 com.apple.GeForceGLDriver 0x00007fff61819e56 0x7fff61519000 + 3149398
11 com.apple.GeForceGLDriver 0x00007fff617fdc83 0x7fff61519000 + 3034243
12 libGPUSupportMercury.dylib 0x00007fff4672b085 gldUpdateDrawFramebuffer + 163
13 GLEngine 0x00007fff6bfe36c4 gleUpdateDrawFramebufferState + 515
14 GLEngine 0x00007fff6bf1b2ce glClear_Exec + 203
15 libffi.dylib 0x00007fff2ddc88f5 ffi_call_unix64 + 85
16 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
17 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
18 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
19 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
20 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
21 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
22 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
23 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
24 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
25 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
26 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
27 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
28 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
29 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
30 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
31 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
32 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
33 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
34 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
35 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
36 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
37 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
38 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
39 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
40 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
41 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
42 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
43 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
44 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
45 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
46 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
47 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
48 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
49 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
50 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
51 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
52 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
53 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
54 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
55 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
56 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
57 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
58 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
59 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
60 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
61 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
62 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
63 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
64 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
65 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
66 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
67 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
68 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
69 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
70 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
71 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
72 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
73 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
74 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
75 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
76 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
77 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
78 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
79 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
80 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
81 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
82 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
83 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
84 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
85 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
86 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
87 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
88 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
89 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
90 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
91 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
92 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
93 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
94 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
95 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
96 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
97 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
98 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
99 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
100 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
101 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
102 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
103 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
104 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
105 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
106 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
107 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
108 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
109 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
110 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
111 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
112 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
113 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
114 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
115 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
116 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
117 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
118 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
119 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
120 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
121 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
122 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
123 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
124 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
125 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
126 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
127 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
128 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
129 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
130 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
131 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
132 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
133 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
134 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
135 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
136 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
137 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
138 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
139 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
140 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
141 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
142 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
143 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
144 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
145 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
146 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
147 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
148 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
149 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
150 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
151 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
152 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
153 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
154 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
155 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
156 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
157 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
158 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
159 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
160 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
161 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
162 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
163 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
164 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
165 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
166 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
167 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
168 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
169 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
170 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
171 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
172 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
173 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
174 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
175 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
176 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
177 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
178 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
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452 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
453 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
454 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
455 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
456 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
457 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
458 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
459 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
460 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
461 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
462 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
463 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
464 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
465 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
466 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
467 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
468 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
469 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
470 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
471 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
472 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
473 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
474 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
475 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
476 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
477 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
478 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
479 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
480 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
481 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
482 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
483 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
484 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
485 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
486 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
487 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
488 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
489 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
490 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
491 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
492 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
493 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
494 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
495 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
496 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
497 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
498 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
499 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
500 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
501 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
502 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
503 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
504 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
505 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
506 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
507 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
508 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
509 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
510 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
511 libffi.dylib 0x00007fff2ddc822d ffi_call_int + 699
Thread 1:
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010b9eb23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010b9eb23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010b9eb23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff207b71c2 kevent64 + 10
1 QtWebEngineCore 0x00000001203c3a2a 0x11c463000 + 66456106
2 QtWebEngineCore 0x00000001203c3927 0x11c463000 + 66455847
3 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
4 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
5 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
6 QtWebEngineCore 0x000000012034a2ad 0x11c463000 + 65958573
7 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
8 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
9 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 5:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff207b71c2 kevent64 + 10
1 QtWebEngineCore 0x00000001203c3a2a 0x11c463000 + 66456106
2 QtWebEngineCore 0x00000001203c3927 0x11c463000 + 66455847
3 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
4 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
5 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
6 QtWebEngineCore 0x000000011f2883a2 0x11c463000 + 48386978
7 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
8 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
9 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 6:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x0000000120391bef 0x11c463000 + 66251759
4 QtWebEngineCore 0x00000001202c71c9 0x11c463000 + 65421769
5 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
6 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
7 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
8 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
9 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 7:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000120389d1b 0x11c463000 + 66219291
3 QtWebEngineCore 0x000000012245792d 0x11c463000 + 100616493
4 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
5 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 8:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x0000000120391bef 0x11c463000 + 66251759
4 QtWebEngineCore 0x00000001202c71c9 0x11c463000 + 65421769
5 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
6 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
7 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
8 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
9 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 9:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff207b71c2 kevent64 + 10
1 QtWebEngineCore 0x00000001203c3a2a 0x11c463000 + 66456106
2 QtWebEngineCore 0x00000001203c3927 0x11c463000 + 66455847
3 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
4 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
5 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
6 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
7 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
8 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x00000001202c7168 0x11c463000 + 65421672
4 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
5 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
6 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
7 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
8 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
9 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x0000000120391bef 0x11c463000 + 66251759
4 QtWebEngineCore 0x00000001202c71c9 0x11c463000 + 65421769
5 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
6 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
7 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
8 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
9 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 12:: NetworkService
0 libsystem_kernel.dylib 0x00007fff207b71c2 kevent64 + 10
1 QtWebEngineCore 0x00000001203c3a2a 0x11c463000 + 66456106
2 QtWebEngineCore 0x00000001203c3927 0x11c463000 + 66455847
3 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
4 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
5 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
6 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
7 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
8 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x0000000120391bef 0x11c463000 + 66251759
4 QtWebEngineCore 0x00000001202c71c9 0x11c463000 + 65421769
5 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
6 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
7 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
8 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
9 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 14:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x00000001203567bf 0x11c463000 + 66009023
4 QtWebEngineCore 0x000000012035726c 0x11c463000 + 66011756
5 QtWebEngineCore 0x0000000120356ecd 0x11c463000 + 66010829
6 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x0000000120391bef 0x11c463000 + 66251759
4 QtWebEngineCore 0x00000001202c71c9 0x11c463000 + 65421769
5 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
6 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
7 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
8 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
9 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 16:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff208dbf0f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff208da5ef __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff208d99fc CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff23268bba _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 17:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x0000000120391bef 0x11c463000 + 66251759
4 QtWebEngineCore 0x00000001202c71c9 0x11c463000 + 65421769
5 QtWebEngineCore 0x0000000120340a5c 0x11c463000 + 65919580
6 QtWebEngineCore 0x00000001202f8998 0x11c463000 + 65624472
7 QtWebEngineCore 0x0000000120362eb8 0x11c463000 + 66059960
8 QtWebEngineCore 0x000000012036304a 0x11c463000 + 66060362
9 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x00000001203567bf 0x11c463000 + 66009023
4 QtWebEngineCore 0x0000000120356f9a 0x11c463000 + 66011034
5 QtWebEngineCore 0x0000000120356e0d 0x11c463000 + 66010637
6 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 19:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 QtCore 0x000000011862c8eb 0x11842a000 + 2107627
3 QtCore 0x000000011862c85e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x0000000119ae8e0d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000118622663 0x11842a000 + 2066019
6 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 20:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 QtCore 0x000000011862c8eb 0x11842a000 + 2107627
3 QtCore 0x000000011862c85e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x0000000119ae8e0d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000118622663 0x11842a000 + 2066019
6 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 21:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 QtCore 0x000000011862c8eb 0x11842a000 + 2107627
3 QtCore 0x000000011862c85e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x0000000119ae8e0d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000118622663 0x11842a000 + 2066019
6 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 22:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 QtCore 0x000000011862c8eb 0x11842a000 + 2107627
3 QtCore 0x000000011862c85e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x0000000119ae8e0d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000118622663 0x11842a000 + 2066019
6 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 23:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff207b0cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff207e3e49 _pthread_cond_wait + 1298
2 QtCore 0x000000011862c8eb 0x11842a000 + 2107627
3 QtCore 0x000000011862c85e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x0000000119ae8e0d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000118622663 0x11842a000 + 2066019
6 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 24:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x00000001203567bf 0x11c463000 + 66009023
4 QtWebEngineCore 0x000000012035726c 0x11c463000 + 66011756
5 QtWebEngineCore 0x0000000120356e6d 0x11c463000 + 66010733
6 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 25:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x00000001203567bf 0x11c463000 + 66009023
4 QtWebEngineCore 0x000000012035726c 0x11c463000 + 66011756
5 QtWebEngineCore 0x0000000120356ddd 0x11c463000 + 66010589
6 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 26:
0 libsystem_pthread.dylib 0x00007fff207df420 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff207df420 start_wqthread + 0
Thread 28:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff207ae2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207ae61c mach_msg + 60
2 QtWebEngineCore 0x0000000120391e26 0x11c463000 + 66252326
3 QtWebEngineCore 0x00000001203567bf 0x11c463000 + 66009023
4 QtWebEngineCore 0x000000012035726c 0x11c463000 + 66011756
5 QtWebEngineCore 0x0000000120356ddd 0x11c463000 + 66010589
6 QtWebEngineCore 0x000000012038a908 0x11c463000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207e38fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff207df443 thread_start + 15
Thread 29:
0 libsystem_pthread.dylib 0x00007fff207df420 start_wqthread + 0
Thread 30:
0 libsystem_pthread.dylib 0x00007fff207df420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011a571e00 rcx: 0x00007feda0955a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007feda0955a80 rsp: 0x00007feda0955a58
r8: 0x00007feda0955f48 r9: 0x0e6b2cccf6f04c76 r10: 0x000000011a571e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007feda7fc8000 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff207b491e rfl: 0x0000000000000246 cr2: 0x000000010acd37b8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
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0x7fff3fff3000 - 0x7fff40070fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff4120b000 - 0x7fff4120efff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41633000 - 0x7fff41651fff libCGInterfaces.dylib (544.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff42cd1000 - 0x7fff43a31fff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff43a32000 - 0x7fff43b45fff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff43b46000 - 0x7fff43b5efff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff43b5f000 - 0x7fff43bbefff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff43bbf000 - 0x7fff43bd8fff com.apple.SafariFoundation (16611 - 16611.3.10.1.16) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff43bd9000 - 0x7fff43bdffff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff43be0000 - 0x7fff43e53fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff446bc000 - 0x7fff446c0fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff46037000 - 0x7fff4603afff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff46726000 - 0x7fff46731fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47d5c000 - 0x7fff47d9dfff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff485eb000 - 0x7fff48606fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff517e4000 - 0x7fff51811fff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff51812000 - 0x7fff5182cfff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff5182d000 - 0x7fff518ccfff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51abc000 - 0x7fff51abffff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff54155000 - 0x7fff5418bfff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55782000 - 0x7fff55785fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff60e51000 - 0x7fff61518fff libclh.dylib (16.0.13) /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/libclh.dylib
0x7fff61519000 - 0x7fff61e2cfff com.apple.GeForceGLDriver (16.0.13 - 16.0.0) /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/GeForceGLDriver
0x7fff61f2c000 - 0x7fff61fa3fff com.apple.driver.AppleIntelHD5000GraphicsMTLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelHD5000GraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsMTLDriver
0x7fff63e8a000 - 0x7fff64020fff com.apple.GeForceMTLDriver (16.0.13 - 16.0.0) /System/Library/Extensions/GeForceMTLDriver.bundle/Contents/MacOS/GeForceMTLDriver
0x7fff65e33000 - 0x7fff66346fff com.apple.driver.AppleIntelHD5000GraphicsGLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelHD5000GraphicsGLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsGLDriver
0x7fff6bcc5000 - 0x7fff6bccbfff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bccc000 - 0x7fff6bcd0fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bcd1000 - 0x7fff6bce0fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bce1000 - 0x7fff6bce3fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bce4000 - 0x7fff6bcecfff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bced000 - 0x7fff6bd20fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bd21000 - 0x7fff6bd5dfff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bd5e000 - 0x7fff6bef1fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bef2000 - 0x7fff6befcfff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6befd000 - 0x7fff6c07afff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c07b000 - 0x7fff6c0a3fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d33c000 - 0x7fff6d394fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e43e000 - 0x7fff6e445fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e446000 - 0x7fff6e52dfff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6faaf000 - 0x7fff6fac1fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73ddb000 - 0x7fff73de6fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73ffc000 - 0x7fff74014fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77924000 - 0x7fff7792bfff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=2.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.7G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 1536K 12
Activity Tracing 256K 1
CG backing stores 4680K 12
CG image 568K 65
CoreAnimation 1240K 144
CoreGraphics 16K 3
CoreUI image data 5300K 61
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 2.2G 7852
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 2144K 12 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 120K 30
Stack 150.7M 31
Stack Guard 56.0M 1
VM_ALLOCATE 222.0M 142
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 36.7M 663
__DATA_CONST 36.4M 325
__DATA_DIRTY 1726K 220
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 533.8M 279
__OBJC_RO 70.2M 1
__OBJC_RW 2496K 2
__TEXT 674.2M 643
__UNICODE 588K 1
mapped file 306.8M 70
shared memory 3024K 35
=========== ======= =======
TOTAL 4.4G 10626
TOTAL, minus reserved VM space 4.3G 10626
===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Strand-4-coot-0.pdb"
Chain information for Strand-4-coot-0.pdb #1
---
Chain | Description
B | No description available
> show cartoons
> rainbow
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/SecStruc-coot-0.pdb"
Chain information for SecStruc-coot-0.pdb #2
---
Chain | Description
A B C D E F G H I J K L M N S T | No description available
O P Q R U V W X Y Z | No description available
> close #2
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Data collection Glacios Dec22/Satellite virus/Full particle/Final
> cryoSPARC/cryosparc_P130_J182_008_volume_map.mrc"
Opened cryosparc_P130_J182_008_volume_map.mrc as #2, grid size 240,240,240,
pixel 1.56, shown at level 1.08, step 1, values float32
> ui mousemode right zoom
> volume #2 style image region 0,0,119,239,239,119 step 1 showOutlineBox true
> volume #2 region 0,0,0,239,239,239 step 1
> volume #2 style surface region 0,0,0,239,239,239 step 1
> ui tool show "Side View"
> volume #2 change image level 0,0 level 1.191,0.8 level 1.733,1
> volume #2 level 0.4706
> volume #2 region 0,0,0,239,239,239
> volume #2 level 1.132
> volume #2 region 0,0,0,239,239,239
> ui mousemode right zoom
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Data collection Glacios Dec22/Satellite virus/Full particle/Final
> cryoSPARC/cryosparc_P130_J182_008_volume_map_sharp.mrc"
Opened cryosparc_P130_J182_008_volume_map_sharp.mrc as #3, grid size
240,240,240, pixel 1.56, shown at level 1.44, step 1, values float32
> volume #3 color white
> volume #3 color #ffff82
> volume #3 color #7d8482
> volume #3 color #808482
> volume #3 color #80848280
> set bgColor white
> lighting flat
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Strand-4-coot-0.pdb"
Chain information for Strand-4-coot-0.pdb #4
---
Chain | Description
A | No description available
> close #4
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Strand-4-coot-0.pdb"
Chain information for Strand-4-coot-0.pdb #4
---
Chain | Description
B | No description available
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> volume #3 level 0.1489
> volume #2 level 1.09
> volume #2 level 1.27
> volume #3 level 1.588
> hide #!2 models
> close #3
> show #!2 models
> volume #2 level 1.032
> close #2
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Data collection Glacios Dec22/Satellite virus/Full
> particle/DeepEMhancer/enhanced_default_best_setting_FULL.mrc"
Opened enhanced_default_best_setting_FULL.mrc as #2, grid size 240,240,240,
pixel 1.56, shown at level 0.26, step 1, values float32
> ui mousemode right translate
> volume #2 style mesh
> volume #2 style surface
> volume #2 color #b2b2b27d
> ui mousemode right zoom
> volume #2 level 0.2687
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Data collection Glacios Dec22/Satellite virus/Full particle/Final
> cryoSPARC/cryosparc_P130_J182_008_volume_map_sharp.mrc"
Opened cryosparc_P130_J182_008_volume_map_sharp.mrc as #3, grid size
240,240,240, pixel 1.56, shown at level 1.44, step 1, values float32
> volume #3 level 0.6767
> volume #3 level 1.627
> volume #3 color #ffffb27f
> ui mousemode right translate
> volume #3 level 1.137
> volume #3 level 0.8783
> ui mousemode right zoom
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Modelling/RealSpaceRefine_2/SecStruc-coot-0_real_space_refined.pdb"
Chain information for SecStruc-coot-0_real_space_refined.pdb #5
---
Chain | Description
A B C D E F G H I J K L M N S T | No description available
O P Q R U V W X Y Z | No description available
> hide #4 models
> close #5
> show #4 models
> close #4
> show #1 models
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Modelling/RealSpaceRefine_3/Strand-4-coot-0_real_space_refined.pdb"
Chain information for Strand-4-coot-0_real_space_refined.pdb #4
---
Chain | Description
B | No description available
> hide #1 models
> show #!2 models
> volume #2 level 0.4233
> lighting soft
> lighting simple
> show #1 models
> hide #!2 models
> hide #4 models
> open /Users/annamunke/Downloads/7ns0.cif
7ns0.cif title:
Bacilladnavirus capsid structure [more info...]
Chain information for 7ns0.cif #5
---
Chain | Description | UniProt
A1 B2 C3 | Capsid protein VP2 | A0A0B6VL42_9VIRU
7ns0.cif mmCIF Assemblies
---
1| author_defined_assembly
> view clip false
> select add #5
14212 atoms, 14347 bonds, 1 pseudobond, 929 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models #5,1,0,0,-264.65,0,1,0,-79.387,0,0,1,16.554
> view matrix models #5,1,0,0,-263.42,0,1,0,-103.45,0,0,1,27.981
> view matrix models #5,1,0,0,-266.6,0,1,0,-68.15,0,0,1,-3.957
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.99831,0.056516,-0.013557,-279.84,-0.053131,0.79288,-0.60705,139.72,-0.023559,0.60675,0.79455,-131.55
> view matrix models
> #5,0.98812,0.10716,-0.11016,-270.82,-0.15185,0.79106,-0.59259,174.04,0.023643,0.60228,0.79793,-148.54
> ui mousemode right zoom
> select #5/A1
4692 atoms, 4736 bonds, 308 residues, 1 model selected
> select ~sel
11955 atoms, 12044 bonds, 1 pseudobond, 1108 residues, 8 models selected
> hide sel & #1#!5 cartoons
> show sel & #1#!5 cartoons
> select #1/B
1200 atoms, 1199 bonds, 240 residues, 1 model selected
> select #5/A1
4692 atoms, 4736 bonds, 308 residues, 1 model selected
> select add #4/B
5927 atoms, 5970 bonds, 555 residues, 2 models selected
> select subtract #4
4692 atoms, 4736 bonds, 308 residues, 1 model selected
> select add #1/B
5892 atoms, 5935 bonds, 548 residues, 2 models selected
> select ~sel
10755 atoms, 10845 bonds, 1 pseudobond, 868 residues, 7 models selected
> hide sel & #!5 cartoons
> select add #5
15447 atoms, 15581 bonds, 1 pseudobond, 1176 residues, 7 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.99594,0.077679,-0.045442,-8.8401,-0.077491,0.99698,0.0058805,7.4866,0.045761,-0.0023354,0.99895,-3.9323,#3,0.99594,0.077679,-0.045442,-8.8401,-0.077491,0.99698,0.0058805,7.4866,0.045761,-0.0023354,0.99895,-3.9323,#4,0.99594,0.077679,-0.045442,-8.8401,-0.077491,0.99698,0.0058805,7.4866,0.045761,-0.0023354,0.99895,-3.9323,#5,0.97124,0.1408,-0.192,-258.29,-0.22782,0.78391,-0.57757,201.12,0.06919,0.6047,0.79344,-165.11
> view matrix models
> #2,0.9961,0.0024745,-0.088181,19.186,0.084748,-0.30436,0.94878,105.87,-0.024491,-0.95255,-0.30338,525.34,#3,0.9961,0.0024745,-0.088181,19.186,0.084748,-0.30436,0.94878,105.87,-0.024491,-0.95255,-0.30338,525.34,#4,0.9961,0.0024745,-0.088181,19.186,0.084748,-0.30436,0.94878,105.87,-0.024491,-0.95255,-0.30338,525.34,#5,0.98181,0.055588,-0.18156,-237.05,0.15239,0.33975,0.92809,-110.99,0.11328,-0.93887,0.3251,411.25
> view matrix models
> #2,-0.83832,0.39572,0.375,9.9288,-0.077718,-0.76757,0.63624,306.27,0.53962,0.50423,0.67422,-109.26,#3,-0.83832,0.39572,0.375,9.9288,-0.077718,-0.76757,0.63624,306.27,0.53962,0.50423,0.67422,-109.26,#4,-0.83832,0.39572,0.375,9.9288,-0.077718,-0.76757,0.63624,306.27,0.53962,0.50423,0.67422,-109.26,#5,-0.87958,0.44907,0.15707,250.13,0.054804,-0.23232,0.97109,99.219,0.47258,0.86277,0.17974,-267.78
> view matrix models
> #2,-0.83334,0.42364,0.35507,6.8749,0.24757,-0.28829,0.92499,90.245,0.49423,0.85873,0.13536,-73.908,#3,-0.83334,0.42364,0.35507,6.8749,0.24757,-0.28829,0.92499,90.245,0.49423,0.85873,0.13536,-73.908,#4,-0.83334,0.42364,0.35507,6.8749,0.24757,-0.28829,0.92499,90.245,0.49423,0.85873,0.13536,-73.908,#5,-0.87937,0.45968,0.12408,253.55,0.31027,0.35557,0.88165,-164.37,0.36116,0.81379,-0.45531,-78.404
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.83334,0.42364,0.35507,5.6342,0.24757,-0.28829,0.92499,64.33,0.49423,0.85873,0.13536,-87.571,#3,-0.83334,0.42364,0.35507,5.6342,0.24757,-0.28829,0.92499,64.33,0.49423,0.85873,0.13536,-87.571,#4,-0.83334,0.42364,0.35507,5.6342,0.24757,-0.28829,0.92499,64.33,0.49423,0.85873,0.13536,-87.571,#5,-0.87937,0.45968,0.12408,252.31,0.31027,0.35557,0.88165,-190.29,0.36116,0.81379,-0.45531,-92.067
> view matrix models
> #2,-0.83334,0.42364,0.35507,5.9578,0.24757,-0.28829,0.92499,67.939,0.49423,0.85873,0.13536,-82.581,#3,-0.83334,0.42364,0.35507,5.9578,0.24757,-0.28829,0.92499,67.939,0.49423,0.85873,0.13536,-82.581,#4,-0.83334,0.42364,0.35507,5.9578,0.24757,-0.28829,0.92499,67.939,0.49423,0.85873,0.13536,-82.581,#5,-0.87937,0.45968,0.12408,252.63,0.31027,0.35557,0.88165,-186.68,0.36116,0.81379,-0.45531,-87.077
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.82845,0.422,0.36822,2.9679,0.24844,-0.31233,0.91691,75.584,0.50194,0.8511,0.15391,-85.567,#3,-0.82845,0.422,0.36822,2.9679,0.24844,-0.31233,0.91691,75.584,0.50194,0.8511,0.15391,-85.567,#4,-0.82845,0.422,0.36822,2.9679,0.24844,-0.31233,0.91691,75.584,0.50194,0.8511,0.15391,-85.567,#5,-0.87398,0.46682,0.13501,246.08,0.3146,0.33179,0.88935,-182.26,0.37038,0.81975,-0.43684,-96.235
> view matrix models
> #2,-0.8355,0.19724,0.51287,27.598,0.45283,-0.28156,0.84597,62.377,0.31126,0.93905,0.14593,-85.854,#3,-0.8355,0.19724,0.51287,27.598,0.45283,-0.28156,0.84597,62.377,0.31126,0.93905,0.14593,-85.854,#4,-0.8355,0.19724,0.51287,27.598,0.45283,-0.28156,0.84597,62.377,0.31126,0.93905,0.14593,-85.854,#5,-0.8434,0.37539,0.38439,212.01,0.51021,0.33531,0.792,-234.92,0.16842,0.86409,-0.47433,-28.388
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.8355,0.19724,0.51287,36.38,0.45283,-0.28156,0.84597,58.631,0.31126,0.93905,0.14593,-86.872,#3,-0.8355,0.19724,0.51287,36.38,0.45283,-0.28156,0.84597,58.631,0.31126,0.93905,0.14593,-86.872,#4,-0.8355,0.19724,0.51287,36.38,0.45283,-0.28156,0.84597,58.631,0.31126,0.93905,0.14593,-86.872,#5,-0.8434,0.37539,0.38439,220.8,0.51021,0.33531,0.792,-238.67,0.16842,0.86409,-0.47433,-29.406
> ui tool show Matchmaker
> matchmaker #!5 & sel to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Strand-4-coot-0.pdb, chain B (#1) with 7ns0.cif, chain A1 (#5),
sequence alignment score = 25.5
RMSD between 4 pruned atom pairs is 1.314 angstroms; (across all 22 pairs:
14.938)
> undo
> view matrix models
> #2,-0.8355,0.19724,0.51287,36.365,0.45283,-0.28156,0.84597,62.163,0.31126,0.93905,0.14593,-83.992,#3,-0.8355,0.19724,0.51287,36.365,0.45283,-0.28156,0.84597,62.163,0.31126,0.93905,0.14593,-83.992,#4,-0.8355,0.19724,0.51287,36.365,0.45283,-0.28156,0.84597,62.163,0.31126,0.93905,0.14593,-83.992,#5,-0.8434,0.37539,0.38439,220.78,0.51021,0.33531,0.792,-235.13,0.16842,0.86409,-0.47433,-26.526
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.94246,-0.098501,0.31947,163.3,0.32164,-0.0066521,0.94684,-14.573,-0.091139,0.99511,0.037952,-32.44,#3,-0.94246,-0.098501,0.31947,163.3,0.32164,-0.0066521,0.94684,-14.573,-0.091139,0.99511,0.037952,-32.44,#4,-0.94246,-0.098501,0.31947,163.3,0.32164,-0.0066521,0.94684,-14.573,-0.091139,0.99511,0.037952,-32.44,#5,-0.90876,0.013496,0.41711,353.94,0.34122,0.59947,0.72402,-243.48,-0.24027,0.80029,-0.54937,159.8
> view matrix models
> #2,-0.90802,0.13507,0.39655,84.877,0.33762,-0.32445,0.8836,76.461,0.24801,0.93621,0.24901,-99.406,#3,-0.90802,0.13507,0.39655,84.877,0.33762,-0.32445,0.8836,76.461,0.24801,0.93621,0.24901,-99.406,#4,-0.90802,0.13507,0.39655,84.877,0.33762,-0.32445,0.8836,76.461,0.24801,0.93621,0.24901,-99.406,#5,-0.90837,0.24838,0.33641,295.39,0.40377,0.31169,0.86013,-202.69,0.10878,0.91715,-0.38342,-40.616
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.90802,0.13507,0.39655,83.069,0.33762,-0.32445,0.8836,76.138,0.24801,0.93621,0.24901,-99.548,#3,-0.90802,0.13507,0.39655,83.069,0.33762,-0.32445,0.8836,76.138,0.24801,0.93621,0.24901,-99.548,#4,-0.90802,0.13507,0.39655,83.069,0.33762,-0.32445,0.8836,76.138,0.24801,0.93621,0.24901,-99.548,#5,-0.90837,0.24838,0.33641,293.58,0.40377,0.31169,0.86013,-203.01,0.10878,0.91715,-0.38342,-40.758
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.92017,0.24564,0.30486,77.086,0.23395,-0.2794,0.93124,65.233,0.31392,0.92822,0.19963,-93.538,#3,-0.92017,0.24564,0.30486,77.086,0.23395,-0.2794,0.93124,65.233,0.31392,0.92822,0.19963,-93.538,#4,-0.92017,0.24564,0.30486,77.086,0.23395,-0.2794,0.93124,65.233,0.31392,0.92822,0.19963,-93.538,#5,-0.93934,0.27932,0.19907,323.75,0.29561,0.36492,0.88286,-185.08,0.17396,0.88815,-0.42535,-46.654
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.92017,0.24564,0.30486,72.326,0.23395,-0.2794,0.93124,65.982,0.31392,0.92822,0.19963,-94.966,#3,-0.92017,0.24564,0.30486,72.326,0.23395,-0.2794,0.93124,65.982,0.31392,0.92822,0.19963,-94.966,#4,-0.92017,0.24564,0.30486,72.326,0.23395,-0.2794,0.93124,65.982,0.31392,0.92822,0.19963,-94.966,#5,-0.93934,0.27932,0.19907,318.99,0.29561,0.36492,0.88286,-184.33,0.17396,0.88815,-0.42535,-48.082
> view matrix models
> #2,-0.92017,0.24564,0.30486,75.946,0.23395,-0.2794,0.93124,65.298,0.31392,0.92822,0.19963,-94.089,#3,-0.92017,0.24564,0.30486,75.946,0.23395,-0.2794,0.93124,65.298,0.31392,0.92822,0.19963,-94.089,#4,-0.92017,0.24564,0.30486,75.946,0.23395,-0.2794,0.93124,65.298,0.31392,0.92822,0.19963,-94.089,#5,-0.93934,0.27932,0.19907,322.61,0.29561,0.36492,0.88286,-185.01,0.17396,0.88815,-0.42535,-47.205
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.98092,0.078783,0.17772,151.57,0.16131,-0.18041,0.97027,39.705,0.10851,0.98043,0.16426,-77.965,#3,-0.98092,0.078783,0.17772,151.57,0.16131,-0.18041,0.97027,39.705,0.10851,0.98043,0.16426,-77.965,#4,-0.98092,0.078783,0.17772,151.57,0.16131,-0.18041,0.97027,39.705,0.10851,0.98043,0.16426,-77.965,#5,-0.97703,0.064249,0.20319,404.53,0.20973,0.45894,0.86336,-179.5,-0.037781,0.88614,-0.46188,38.889
> view matrix models
> #2,-0.98511,0.05477,0.16297,161.2,0.15254,-0.15884,0.97545,34.128,0.079312,0.98578,0.14812,-72.716,#3,-0.98511,0.05477,0.16297,161.2,0.15254,-0.15884,0.97545,34.128,0.079312,0.98578,0.14812,-72.716,#4,-0.98511,0.05477,0.16297,161.2,0.15254,-0.15884,0.97545,34.128,0.079312,0.98578,0.14812,-72.716,#5,-0.97787,0.035917,0.2061,413.31,0.19791,0.47819,0.85567,-179.72,-0.067822,0.87752,-0.47471,55.373
> view matrix models
> #2,-0.99306,-0.040041,0.11061,197.04,0.11324,-0.070831,0.99104,12.954,-0.031847,0.99668,0.074873,-47.788,#3,-0.99306,-0.040041,0.11061,197.04,0.11324,-0.070831,0.99104,12.954,-0.031847,0.99668,0.074873,-47.788,#4,-0.99306,-0.040041,0.11061,197.04,0.11324,-0.070831,0.99104,12.954,-0.031847,0.99668,0.074873,-47.788,#5,-0.97256,-0.07147,0.22138,442.58,0.14608,0.55299,0.82028,-177.25,-0.18105,0.83012,-0.52738,123.18
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.99306,-0.040041,0.11061,195.27,0.11324,-0.070831,0.99104,13.762,-0.031847,0.99668,0.074873,-48.468,#3,-0.99306,-0.040041,0.11061,195.27,0.11324,-0.070831,0.99104,13.762,-0.031847,0.99668,0.074873,-48.468,#4,-0.99306,-0.040041,0.11061,195.27,0.11324,-0.070831,0.99104,13.762,-0.031847,0.99668,0.074873,-48.468,#5,-0.97256,-0.07147,0.22138,440.81,0.14608,0.55299,0.82028,-176.44,-0.18105,0.83012,-0.52738,122.5
> view matrix models
> #2,-0.99306,-0.040041,0.11061,198.06,0.11324,-0.070831,0.99104,13.369,-0.031847,0.99668,0.074873,-49.745,#3,-0.99306,-0.040041,0.11061,198.06,0.11324,-0.070831,0.99104,13.369,-0.031847,0.99668,0.074873,-49.745,#4,-0.99306,-0.040041,0.11061,198.06,0.11324,-0.070831,0.99104,13.369,-0.031847,0.99668,0.074873,-49.745,#5,-0.97256,-0.07147,0.22138,443.6,0.14608,0.55299,0.82028,-176.83,-0.18105,0.83012,-0.52738,121.23
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.99306,-0.040041,0.11061,198,0.11324,-0.070831,0.99104,10.859,-0.031847,0.99668,0.074873,-49.187,#3,-0.99306,-0.040041,0.11061,198,0.11324,-0.070831,0.99104,10.859,-0.031847,0.99668,0.074873,-49.187,#4,-0.99306,-0.040041,0.11061,198,0.11324,-0.070831,0.99104,10.859,-0.031847,0.99668,0.074873,-49.187,#5,-0.97256,-0.07147,0.22138,443.54,0.14608,0.55299,0.82028,-179.34,-0.18105,0.83012,-0.52738,121.78
> view matrix models
> #2,-0.99306,-0.040041,0.11061,197.56,0.11324,-0.070831,0.99104,10.751,-0.031847,0.99668,0.074873,-50.888,#3,-0.99306,-0.040041,0.11061,197.56,0.11324,-0.070831,0.99104,10.751,-0.031847,0.99668,0.074873,-50.888,#4,-0.99306,-0.040041,0.11061,197.56,0.11324,-0.070831,0.99104,10.751,-0.031847,0.99668,0.074873,-50.888,#5,-0.97256,-0.07147,0.22138,443.09,0.14608,0.55299,0.82028,-179.45,-0.18105,0.83012,-0.52738,120.08
> view matrix models
> #2,-0.99306,-0.040041,0.11061,197.37,0.11324,-0.070831,0.99104,11.302,-0.031847,0.99668,0.074873,-50.978,#3,-0.99306,-0.040041,0.11061,197.37,0.11324,-0.070831,0.99104,11.302,-0.031847,0.99668,0.074873,-50.978,#4,-0.99306,-0.040041,0.11061,197.37,0.11324,-0.070831,0.99104,11.302,-0.031847,0.99668,0.074873,-50.978,#5,-0.97256,-0.07147,0.22138,442.9,0.14608,0.55299,0.82028,-178.9,-0.18105,0.83012,-0.52738,119.99
> select clear
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAVII_vs_satellite_alanine.png" width 864 height 597 supersample
> 3
> hide #1 models
> select add #5
14212 atoms, 14347 bonds, 1 pseudobond, 929 residues, 2 models selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAVII.pdb" models #5 selectedOnly true relModel #1
> show #!2 models
> view matrix models
> #5,-0.97256,-0.07147,0.22138,431.53,0.14608,0.55299,0.82028,-196.84,-0.18105,0.83012,-0.52738,129.32
> undo
> select clear
> ui mousemode right zoom
> show #!5 cartoons
> select add #5
14212 atoms, 14347 bonds, 1 pseudobond, 929 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.97256,-0.07147,0.22138,454.28,0.14608,0.55299,0.82028,-214.48,-0.18105,0.83012,-0.52738,102.58
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.95322,-0.047042,0.2986,423.71,0.11916,0.84935,0.51421,-228.07,-0.2778,0.52574,-0.80401,286.42
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.95322,-0.047042,0.2986,422.6,0.11916,0.84935,0.51421,-211.39,-0.2778,0.52574,-0.80401,292.92
> view matrix models
> #5,-0.95322,-0.047042,0.2986,413.09,0.11916,0.84935,0.51421,-207.94,-0.2778,0.52574,-0.80401,289.72
> view matrix models
> #5,-0.95322,-0.047042,0.2986,410.29,0.11916,0.84935,0.51421,-215.47,-0.2778,0.52574,-0.80401,292.41
> close #5
> close #2
> show #1 models
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAVII.pdb"
Chain information for CtenDNAVII.pdb #2
---
Chain | Description
A1 B2 C3 | No description available
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/Data collection Glacios Dec22/Satellite virus/Full
> particle/DeepEMhancer/enhanced_default_best_setting_FULL.mrc"
Opened enhanced_default_best_setting_FULL.mrc as #5, grid size 240,240,240,
pixel 1.56, shown at level 0.26, step 1, values float32
> hide #1 models
> volume #5 color #b2b5ff
> volume #5 color #b2b5b5
> volume #5 color #b2b5b580
> ui mousemode right translate
> ui mousemode right zoom
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLN 1 142
GLY 1 145 1 4
Start residue of secondary structure not found: HELIX 2 2 LEU 1 152 ALA 1 154
1 3
Start residue of secondary structure not found: HELIX 3 3 VAL 1 180 ASN 1 184
1 5
Start residue of secondary structure not found: HELIX 4 4 THR 1 198 ASP 1 200
1 3
Start residue of secondary structure not found: HELIX 5 5 SER 1 227 ASN 1 231
1 5
81 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1.pdb #6
---
Chain | Description
A1 | No description available
B2 | No description available
C3 | No description available
> hide #!2 models
> show #!2 models
> hide #!5 models
> ui tool show Matchmaker
> select add #6/A1
4626 atoms, 4670 bonds, 304 residues, 1 model selected
> ui tool show Matchmaker
> matchmaker #!6 & sel to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker CtenDNAVII.pdb, chain A1 (#2) with CtenDNAV-II_T=1.pdb, chain A1
(#6), sequence alignment score = 1289.5
RMSD between 301 pruned atom pairs is 0.709 angstroms; (across all 303 pairs:
0.729)
> matchmaker #!6 & sel to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker CtenDNAVII.pdb, chain A1 (#2) with CtenDNAV-II_T=1.pdb, chain A1
(#6), sequence alignment score = 1289.5
RMSD between 301 pruned atom pairs is 0.709 angstroms; (across all 303 pairs:
0.729)
> select add #6
14146 atoms, 14281 bonds, 1 pseudobond, 925 residues, 2 models selected
> select subtract #6
Nothing selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1.pdb" relModel #6
> show #!5 models
> select add #6/A1
4626 atoms, 4670 bonds, 304 residues, 1 model selected
> close #6
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLN 1 142
GLY 1 145 1 4
Start residue of secondary structure not found: HELIX 2 2 LEU 1 152 ALA 1 154
1 3
Start residue of secondary structure not found: HELIX 3 3 VAL 1 180 ASN 1 184
1 5
Start residue of secondary structure not found: HELIX 4 4 THR 1 198 ASP 1 200
1 3
Start residue of secondary structure not found: HELIX 5 5 SER 1 227 ASN 1 231
1 5
81 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1.pdb #6
---
Chain | Description
A1 | No description available
B2 | No description available
C3 | No description available
> select add #6/A1
4626 atoms, 4670 bonds, 304 residues, 1 model selected
> select add #6
14146 atoms, 14281 bonds, 1 pseudobond, 925 residues, 2 models selected
> select subtract #6
Nothing selected
> select add #6/B2
4746 atoms, 4790 bonds, 308 residues, 1 model selected
> ui mousemode right "translate selected models"
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,-1.025,0,1,0,4.7545,0,0,1,-1.192
> hide #!2 models
> view matrix models #6,1,0,0,1.3876,0,1,0,4.5669,0,0,1,-2.889
> view matrix models #6,1,0,0,-0.39243,0,1,0,4.2284,0,0,1,-2.7596
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.99869,-0.048962,0.015104,7.713,0.049351,0.99843,-0.026506,4.2799,-0.013782,0.027217,0.99953,-7.2039
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.99869,-0.048962,0.015104,7.5787,0.049351,0.99843,-0.026506,2.9577,-0.013782,0.027217,0.99953,-6.3072
> view matrix models
> #6,0.99869,-0.048962,0.015104,7.6037,0.049351,0.99843,-0.026506,2.9048,-0.013782,0.027217,0.99953,-6.201
> view matrix models
> #6,0.99869,-0.048962,0.015104,7.6735,0.049351,0.99843,-0.026506,3.031,-0.013782,0.027217,0.99953,-6.1546
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.99869,-0.048962,0.015104,7.5213,0.049351,0.99843,-0.026506,2.2726,-0.013782,0.027217,0.99953,-5.8143
> close #6
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLN 1 142
GLY 1 145 1 4
Start residue of secondary structure not found: HELIX 2 2 LEU 1 152 ALA 1 154
1 3
Start residue of secondary structure not found: HELIX 3 3 VAL 1 180 ASN 1 184
1 5
Start residue of secondary structure not found: HELIX 4 4 THR 1 198 ASP 1 200
1 3
Start residue of secondary structure not found: HELIX 5 5 SER 1 227 ASN 1 231
1 5
81 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1.pdb #6
---
Chain | Description
A1 | No description available
B2 | No description available
C3 | No description available
> color #6 #d322d3ff
> select add #6/B2
4746 atoms, 4790 bonds, 308 residues, 1 model selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Bchain.pdb" selectedOnly true relModel #6
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Bchain.pdb"
Chain information for CtenDNAV-II_T=1_Bchain.pdb #7
---
Chain | Description
B2 | No description available
> hide #!6 models
> select add #7
9492 atoms, 9580 bonds, 616 residues, 2 models selected
> view matrix models
> #6,1,0,0,2.8579,0,1,0,0.86047,0,0,1,-1.6533,#7,1,0,0,2.8579,0,1,0,0.86047,0,0,1,-1.6533
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #6,1,0,0,2.9336,0,1,0,1.835,0,0,1,-0.82961,#7,1,0,0,2.9336,0,1,0,1.835,0,0,1,-0.82961
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.99987,0.015364,0.0043625,-0.89608,-0.014859,0.99501,-0.098693,22.509,-0.0058571,0.098616,0.99511,-18.84,#7,0.99987,0.015364,0.0043625,-0.89608,-0.014859,0.99501,-0.098693,22.509,-0.0058571,0.098616,0.99511,-18.84
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.99987,0.015364,0.0043625,-1.2975,-0.014859,0.99501,-0.098693,22.739,-0.0058571,0.098616,0.99511,-21.383,#7,0.99987,0.015364,0.0043625,-1.2975,-0.014859,0.99501,-0.098693,22.739,-0.0058571,0.098616,0.99511,-21.383
> view matrix models
> #6,0.99987,0.015364,0.0043625,-1.1513,-0.014859,0.99501,-0.098693,22.071,-0.0058571,0.098616,0.99511,-20.655,#7,0.99987,0.015364,0.0043625,-1.1513,-0.014859,0.99501,-0.098693,22.071,-0.0058571,0.098616,0.99511,-20.655
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.99959,-0.0015961,-0.028502,8.2861,-0.0018644,0.99265,-0.12098,25.326,0.028485,0.12098,0.99225,-28.028,#7,0.99959,-0.0015961,-0.028502,8.2861,-0.0018644,0.99265,-0.12098,25.326,0.028485,0.12098,0.99225,-28.028
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.99959,-0.0015961,-0.028502,6.818,-0.0018644,0.99265,-0.12098,24.533,0.028485,0.12098,0.99225,-27.63,#7,0.99959,-0.0015961,-0.028502,6.818,-0.0018644,0.99265,-0.12098,24.533,0.028485,0.12098,0.99225,-27.63
> view matrix models
> #6,0.99959,-0.0015961,-0.028502,6.9426,-0.0018644,0.99265,-0.12098,24.856,0.028485,0.12098,0.99225,-27.891,#7,0.99959,-0.0015961,-0.028502,6.9426,-0.0018644,0.99265,-0.12098,24.856,0.028485,0.12098,0.99225,-27.891
> ui mousemode right zoom
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Bchain.pdb" selectedOnly true relModel #6
> ui tool show "Fit in Map"
> fitmap #7 inMap #5
Fit molecule CtenDNAV-II_T=1_Bchain.pdb (#7) to map
enhanced_default_best_setting_FULL.mrc (#5) using 4746 atoms
average map value = 0.2406, steps = 84
shifted from previous position = 0.946
rotated from previous position = 2.76 degrees
atoms outside contour = 2975, contour level = 0.26008
Position of CtenDNAV-II_T=1_Bchain.pdb (#7) relative to
enhanced_default_best_setting_FULL.mrc (#5) coordinates:
Matrix rotation and translation
0.99861507 0.00654861 -0.05220202 8.74599688
-0.01070411 0.99675928 -0.07972681 18.21098064
0.05151075 0.08017517 0.99544894 -22.29352712
Axis 0.83556267 -0.54194775 -0.09015356
Axis point 0.00000000 290.76275069 212.84798440
Rotation angle (degrees) 5.49075897
Shift along axis -0.55173068
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Bchain.pdb" models #7 selectedOnly true relModel #6
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Bchain.pdb" models #7 selectedOnly true relModel #5
> show sel & #7 cartoons
> select add #6
18892 atoms, 19071 bonds, 1 pseudobond, 1233 residues, 3 models selected
> show #!6 models
> select add #6/C3
18892 atoms, 19071 bonds, 1 pseudobond, 1233 residues, 3 models selected
> select clear
> select add #6/C3
4774 atoms, 4821 bonds, 1 pseudobond, 313 residues, 2 models selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb" selectedOnly true relModel #6
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb"
Chain information for CtenDNAV-II_T=1_Cchain.pdb #8
---
Chain | Description
C3 | No description available
> hide #!5 models
> hide #!6 models
> hide #7 models
> show #!5 models
> ui mousemode right translate
> ui tool show "Fit in Map"
> fitmap #8 inMap #5
Fit molecule CtenDNAV-II_T=1_Cchain.pdb (#8) to map
enhanced_default_best_setting_FULL.mrc (#5) using 4774 atoms
average map value = 0.2265, steps = 56
shifted from previous position = 2.4
rotated from previous position = 3.71 degrees
atoms outside contour = 3069, contour level = 0.26008
Position of CtenDNAV-II_T=1_Cchain.pdb (#8) relative to
enhanced_default_best_setting_FULL.mrc (#5) coordinates:
Matrix rotation and translation
0.99908111 0.01773302 -0.03901903 4.04260728
-0.01960339 0.99865080 -0.04808621 13.25087149
0.03811368 0.04880693 0.99808077 -14.58888985
Axis 0.74907003 -0.59630440 -0.28864365
Axis point 0.00000000 312.99513805 258.56909866
Rotation angle (degrees) 3.70822811
Shift along axis -0.66236656
> select add #8
9548 atoms, 9642 bonds, 2 pseudobonds, 626 residues, 4 models selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb" selectedOnly true relModel #7
> close #8
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb"
Chain information for CtenDNAV-II_T=1_Cchain.pdb
---
Chain | Description
8.1/C3 8.2/C3 | No description available
> fitmap #8.2 inMap #5
Fit molecule CtenDNAV-II_T=1_Cchain.pdb (#8.2) to map
enhanced_default_best_setting_FULL.mrc (#5) using 4774 atoms
average map value = 0.2265, steps = 56
shifted from previous position = 2.52
rotated from previous position = 5.5 degrees
atoms outside contour = 3072, contour level = 0.26008
Position of CtenDNAV-II_T=1_Cchain.pdb (#8.2) relative to
enhanced_default_best_setting_FULL.mrc (#5) coordinates:
Matrix rotation and translation
0.99857714 0.00634263 -0.05294780 8.93355632
-0.01054048 0.99678836 -0.07938425 18.14412014
0.05227424 0.07982940 0.99543692 -22.42608876
Axis 0.83102392 -0.54921190 -0.08812226
Axis point 0.00000000 293.71066060 212.77105555
Rotation angle (degrees) 5.49700162
Shift along axis -0.56473023
> select add #8.2
9548 atoms, 9642 bonds, 2 pseudobonds, 626 residues, 4 models selected
> select add #8.1
14322 atoms, 14463 bonds, 3 pseudobonds, 939 residues, 6 models selected
> close #8.1
> hide #!8.2 models
> show #!8.2 models
> hide #!8 models
> show #!8 models
> close #8
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb"
Chain information for CtenDNAV-II_T=1_Cchain.pdb
---
Chain | Description
8.1/C3 8.2/C3 | No description available
> close #8.2
> close #8
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb"
Chain information for CtenDNAV-II_T=1_Cchain.pdb
---
Chain | Description
8.1/C3 8.2/C3 | No description available
> close #8.2
> close #8.1
> select add #8
4774 atoms, 4821 bonds, 1 pseudobond, 313 residues, 3 models selected
> hide #8 models
> show #8 models
> select add #6
14146 atoms, 14281 bonds, 1 pseudobond, 925 residues, 3 models selected
> select subtract #6
1 model selected
> close #8
> show #!6 models
> select add #6/C3
4774 atoms, 4821 bonds, 1 pseudobond, 313 residues, 2 models selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb" selectedOnly true relModel #5
> hide #!6 models
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb"
Chain information for CtenDNAV-II_T=1_Cchain.pdb #8
---
Chain | Description
C3 | No description available
> fitmap #8 inMap #5
Fit molecule CtenDNAV-II_T=1_Cchain.pdb (#8) to map
enhanced_default_best_setting_FULL.mrc (#5) using 4774 atoms
average map value = 0.2265, steps = 52
shifted from previous position = 1.87
rotated from previous position = 4.33 degrees
atoms outside contour = 3074, contour level = 0.26008
Position of CtenDNAV-II_T=1_Cchain.pdb (#8) relative to
enhanced_default_best_setting_FULL.mrc (#5) coordinates:
Matrix rotation and translation
0.99975155 0.02091571 -0.00770514 -3.82774891
-0.02030526 0.99718137 0.07222890 -9.24643619
0.00919414 -0.07205450 0.99735832 14.89942712
Axis -0.95548875 -0.11191224 -0.27297784
Axis point 0.00000000 204.19757087 135.01595793
Rotation angle (degrees) 4.33009018
Shift along axis 0.62494697
> select add #6
14146 atoms, 14281 bonds, 1 pseudobond, 925 residues, 2 models selected
> select subtract #6
Nothing selected
> select add #8
4774 atoms, 4821 bonds, 1 pseudobond, 313 residues, 2 models selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb" selectedOnly true relModel #7
> close #8
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb"
Chain information for CtenDNAV-II_T=1_Cchain.pdb #8
---
Chain | Description
C3 | No description available
> fitmap #8 inMap #5
Fit molecule CtenDNAV-II_T=1_Cchain.pdb (#8) to map
enhanced_default_best_setting_FULL.mrc (#5) using 4774 atoms
average map value = 0.2265, steps = 72
shifted from previous position = 2.45
rotated from previous position = 5.49 degrees
atoms outside contour = 3073, contour level = 0.26008
Position of CtenDNAV-II_T=1_Cchain.pdb (#8) relative to
enhanced_default_best_setting_FULL.mrc (#5) coordinates:
Matrix rotation and translation
0.99853855 0.00209370 -0.05400347 10.07886443
-0.00636043 0.99685764 -0.07895817 17.53345843
0.05366846 0.07918626 0.99541410 -22.48420991
Axis 0.82579555 -0.56223917 -0.04414558
Axis point 0.00000000 296.19693179 206.41026942
Rotation angle (degrees) 5.49464833
Shift along axis -0.54233716
> select add #8
4774 atoms, 4821 bonds, 1 pseudobond, 313 residues, 2 models selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb" models #8 selectedOnly true
> close #8
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb"
Chain information for CtenDNAV-II_T=1_Cchain.pdb #8
---
Chain | Description
C3 | No description available
> select clear
> hide #!8 models
> show #!6 models
> select add #6/A1
4626 atoms, 4670 bonds, 304 residues, 1 model selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Achain.pdb" models #6 selectedOnly true
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Achain.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1_Achain.pdb
---
warnings | Start residue of secondary structure not found: HELIX 6 6 GLUB2 181
GLUB2 183 1 3
Start residue of secondary structure not found: HELIX 7 7 PROB2 199 GLUB2 201
1 3
Start residue of secondary structure not found: HELIX 8 8 SERB2 226 PHEB2 229
1 4
Start residue of secondary structure not found: HELIX 9 9 ALAB2 233 GLYB2 238
1 6
Start residue of secondary structure not found: HELIX 10 10 METB2 241 GLUB2
243 1 3
47 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1_Achain.pdb #9
---
Chain | Description
A1 | No description available
> hide #!6 models
> volume #5 level 0.1465
> volume #5 level 0.05819
> show #!8 models
> show #7 models
> hide #9 models
> show #9 models
> volume #5 level 0.08263
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAVII.pdb"
Chain information for CtenDNAVII.pdb #10
---
Chain | Description
A1 B2 C3 | No description available
> hide #7 models
> hide #!8 models
> hide #9 models
> close #10
> close #2
> close #1
> close #4
> show #!6 models
> close #6
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLN 1 142
GLY 1 145 1 4
Start residue of secondary structure not found: HELIX 2 2 LEU 1 152 ALA 1 154
1 3
Start residue of secondary structure not found: HELIX 3 3 VAL 1 180 ASN 1 184
1 5
Start residue of secondary structure not found: HELIX 4 4 THR 1 198 ASP 1 200
1 3
Start residue of secondary structure not found: HELIX 5 5 SER 1 227 ASN 1 231
1 5
81 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1.pdb #1
---
Chain | Description
A1 | No description available
B2 | No description available
C3 | No description available
> select add #1/A1
4626 atoms, 4670 bonds, 304 residues, 1 model selected
> close #9
> select clear
> select add #1/A1
4626 atoms, 4670 bonds, 304 residues, 1 model selected
> save "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Achain.pdb" models #1 selectedOnly true
> hide #!1 models
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Achain.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1_Achain.pdb
---
warnings | Start residue of secondary structure not found: HELIX 6 6 GLUB2 181
GLUB2 183 1 3
Start residue of secondary structure not found: HELIX 7 7 PROB2 199 GLUB2 201
1 3
Start residue of secondary structure not found: HELIX 8 8 SERB2 226 PHEB2 229
1 4
Start residue of secondary structure not found: HELIX 9 9 ALAB2 233 GLYB2 238
1 6
Start residue of secondary structure not found: HELIX 10 10 METB2 241 GLUB2
243 1 3
47 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1_Achain.pdb #2
---
Chain | Description
A1 | No description available
> close #2#1
> close #7#8
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Achain.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1_Achain.pdb
---
warnings | Start residue of secondary structure not found: HELIX 6 6 GLUB2 181
GLUB2 183 1 3
Start residue of secondary structure not found: HELIX 7 7 PROB2 199 GLUB2 201
1 3
Start residue of secondary structure not found: HELIX 8 8 SERB2 226 PHEB2 229
1 4
Start residue of secondary structure not found: HELIX 9 9 ALAB2 233 GLYB2 238
1 6
Start residue of secondary structure not found: HELIX 10 10 METB2 241 GLUB2
243 1 3
47 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1_Achain.pdb #1
---
Chain | Description
A1 | No description available
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Bchain.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1_Bchain.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLU 2 181
GLU 2 183 1 3
Start residue of secondary structure not found: HELIX 2 2 PRO 2 199 GLU 2 201
1 3
Start residue of secondary structure not found: HELIX 3 3 SER 2 226 PHE 2 229
1 4
Start residue of secondary structure not found: HELIX 4 4 ALA 2 233 GLY 2 238
1 6
Start residue of secondary structure not found: HELIX 5 5 MET 2 241 GLU 2 243
1 3
17 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1_Bchain.pdb #2
---
Chain | Description
B2 | No description available
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAV-II_T=1_Cchain.pdb"
Summary of feedback from opening /Users/annamunke/Documents/PROJECTS/Algae
viruses/CtenDNAVII satellite virus/CtenDNAV-II_T=1_Cchain.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 SER 3 61
VAL 3 66 1 6
Start residue of secondary structure not found: HELIX 2 2 GLU 3 181 GLU 3 183
1 3
Start residue of secondary structure not found: HELIX 3 3 PRO 3 199 GLU 3 201
1 3
Start residue of secondary structure not found: HELIX 4 4 SER 3 226 SER 3 228
1 3
Start residue of secondary structure not found: HELIX 5 5 PHE 3 229 ASN 3 231
1 3
25 messages similar to the above omitted
Chain information for CtenDNAV-II_T=1_Cchain.pdb #4
---
Chain | Description
C3 | No description available
> open "/Users/annamunke/Documents/PROJECTS/Algae viruses/CtenDNAVII satellite
> virus/CtenDNAVII.pdb"
Chain information for CtenDNAVII.pdb #6
---
Chain | Description
A1 B2 C3 | No description available
> hide #!5 models
> ui tool show Matchmaker
> matchmaker #!6 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker CtenDNAV-II_T=1_Achain.pdb, chain A1 (#1) with CtenDNAVII.pdb,
chain A1 (#6), sequence alignment score = 1289.5
RMSD between 301 pruned atom pairs is 0.709 angstroms; (across all 303 pairs:
0.729)
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 NVIDIA-16.0.13
OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro11,3
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2,5 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 433.140.2.0.0
SMC Version (system): 2.19f12
Software:
System Software Overview:
System Version: macOS 11.7 (20G817)
Kernel Version: Darwin 20.6.0
Time since boot: 13 days 9:26
Graphics/Displays:
Intel Iris Pro:
Chipset Model: Intel Iris Pro
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0d26
Revision ID: 0x0008
Automatic Graphics Switching: Supported
gMux Version: 4.0.8 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 1
NVIDIA GeForce GT 750M:
Chipset Model: NVIDIA GeForce GT 750M
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 2 GB
Vendor: NVIDIA (0x10de)
Device ID: 0x0fe9
Revision ID: 0x00a2
ROM Revision: 3776
Automatic Graphics Switching: Supported
gMux Version: 4.0.8 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Q27P2W:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 75.00Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Display Serial Number: TAIMCHA003974
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.19.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.5
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 11.7, NVIDIA GeForce GT 750M |
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Apple Nvidia graphics driver crash.