![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8442 closed defect (can't reproduce)
Crash opening PDB
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.13.6-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007fff9575c380 (most recent call first):
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/pdb/pdb.py", line 74 in open_pdb
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/pdb/__init__.py", line 34 in open
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/open_command/cmd.py", line 421 in collated_open
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/open_command/cmd.py", line 179 in provider_open
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py", line 2852 in run
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/open_command/cmd.py", line 118 in cmd_open
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py", line 2852 in run
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/run.py", line 36 in run
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 1812 in _open_dropped_file
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 261 in event
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 293 in event_loop
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 866 in init
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1015 in
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code
File "/private/var/folders/w8/xqy9lq4j0519z707cxhtc4w00000gn/T/AppTranslocation/074C4FBF-AA45-4096-8AB8-7ED102505EF2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main
Process: ChimeraX [5306]
Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [5306]
User ID: 501
Date/Time: 2023-02-05 11:56:14.220 +0100
OS Version: Mac OS X 10.13.6 (17G14042)
Report Version: 12
Anonymous UUID: 5152000F-7680-BEC3-CC9B-D05DBF6F8829
Sleep/Wake UUID: 8759B789-BA6A-490B-A0FE-3A76EB3C468A
Time Awake Since Boot: 8900 seconds
Time Since Wake: 600 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000008
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x8:
-->
__TEXT 000000010fa3f000-000000010fa40000 [ 4K] r-x/r-x SM=COW /var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5ce91b66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5d05c080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff5cd9f6fe raise + 26
3 libsystem_platform.dylib 0x00007fff5d04ff5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 _pdbio.cpython-38-darwin.so 0x000000012ba1cabd read_one_structure(std::__1::pair (*)(void*), void*, atomstruct::Structure*, int*, std::__1::unordered_map, std::__1::equal_to, std::__1::allocator > >&, std::__1::vector >*, std::__1::vector >*, std::__1::vector >*, std::__1::vector >*, std::__1::vector >*, std::__1::set, std::__1::allocator >*, bool*, _object*, bool, bool*, std::__1::set, std::__1::allocator >&, bool, int, bool*) + 541
6 _pdbio.cpython-38-darwin.so 0x000000012ba1045a read_pdb(_object*, _object*, bool, bool, bool, int) + 1082
7 _pdbio.cpython-38-darwin.so 0x000000012ba1000e read_pdb_file + 110
8 org.python.python 0x000000010fa6b0c2 cfunction_call_varargs + 290
9 org.python.python 0x000000010fa6aa85 _PyObject_MakeTpCall + 373
10 org.python.python 0x000000010fb39665 call_function + 533
11 org.python.python 0x000000010fb3646e _PyEval_EvalFrameDefault + 25678
12 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
13 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
14 org.python.python 0x000000010fa6adad PyVectorcall_Call + 109
15 org.python.python 0x000000010fb36978 _PyEval_EvalFrameDefault + 26968
16 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
17 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
18 org.python.python 0x000000010fa6db7c method_vectorcall + 396
19 org.python.python 0x000000010fa6adad PyVectorcall_Call + 109
20 org.python.python 0x000000010fb36978 _PyEval_EvalFrameDefault + 26968
21 org.python.python 0x000000010fa6b3d0 function_code_fastcall + 128
22 org.python.python 0x000000010fb3960c call_function + 444
23 org.python.python 0x000000010fb36505 _PyEval_EvalFrameDefault + 25829
24 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
25 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
26 org.python.python 0x000000010fa6adad PyVectorcall_Call + 109
27 org.python.python 0x000000010fb36978 _PyEval_EvalFrameDefault + 26968
28 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
29 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
30 org.python.python 0x000000010fa6da9a method_vectorcall + 170
31 org.python.python 0x000000010fb3960c call_function + 444
32 org.python.python 0x000000010fb36598 _PyEval_EvalFrameDefault + 25976
33 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
34 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
35 org.python.python 0x000000010fa6adad PyVectorcall_Call + 109
36 org.python.python 0x000000010fb36978 _PyEval_EvalFrameDefault + 26968
37 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
38 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
39 org.python.python 0x000000010fa6da9a method_vectorcall + 170
40 org.python.python 0x000000010fb3960c call_function + 444
41 org.python.python 0x000000010fb36598 _PyEval_EvalFrameDefault + 25976
42 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
43 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
44 org.python.python 0x000000010fb3960c call_function + 444
45 org.python.python 0x000000010fb36505 _PyEval_EvalFrameDefault + 25829
46 org.python.python 0x000000010fa6b3d0 function_code_fastcall + 128
47 org.python.python 0x000000010fb3960c call_function + 444
48 org.python.python 0x000000010fb36505 _PyEval_EvalFrameDefault + 25829
49 org.python.python 0x000000010fa6b3d0 function_code_fastcall + 128
50 org.python.python 0x000000010fa6db7c method_vectorcall + 396
51 org.python.python 0x000000010fa6adad PyVectorcall_Call + 109
52 sip.cpython-38-darwin.so 0x000000011a8188a6 sip_api_call_method + 198
53 QtWidgets.abi3.so 0x000000011aa08e4e sipQApplication::event(QEvent*) + 126
54 QtWidgets 0x000000011ae559ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
55 QtWidgets 0x000000011ae56e11 QApplication::notify(QObject*, QEvent*) + 497
56 QtWidgets.abi3.so 0x000000011aa08db9 sipQApplication::notify(QObject*, QEvent*) + 233
57 QtCore 0x000000011a205a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
58 QtGui 0x000000011b4c18c6 QGuiApplicationPrivate::processWindowSystemEvent(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 1766
59 QtGui 0x000000011b4a6961 QWindowSystemInterface::handleFileOpenEvent(QString const&) + 65
60 libqcocoa.dylib 0x000000012ad73475 -[QCocoaApplicationDelegate application:openFiles:] + 485
61 com.apple.AppKit 0x00007fff32781a84 withWindowOrderingObserverHeuristic + 479
62 com.apple.AppKit 0x00007fff3278164f -[NSApplication(NSAppleEventHandling) _openURLs:withCompletionHandler:] + 1026
63 com.apple.AppKit 0x00007fff3255b2f1 __69-[NSApplication(NSAppleEventHandling) _handleAEOpenDocumentsForURLs:]_block_invoke + 891
64 com.apple.AppKit 0x00007fff3255ad4c -[NSApplication(NSAppleEventHandling) _handleAEOpenDocumentsForURLs:] + 235
65 com.apple.AppKit 0x00007fff323616fd -[NSApplication(NSAppleEventHandling) _handleCoreEvent:withReplyEvent:] + 766
66 com.apple.Foundation 0x00007fff36eedef4 -[NSAppleEventManager dispatchRawAppleEvent:withRawReply:handlerRefCon:] + 287
67 com.apple.Foundation 0x00007fff36eedd72 _NSAppleEventManagerGenericHandler + 102
68 com.apple.AE 0x00007fff35ec5f08 aeDispatchAppleEvent(AEDesc const*, AEDesc*, unsigned int, unsigned char*) + 1788
69 com.apple.AE 0x00007fff35ec57af dispatchEventAndSendReply(AEDesc const*, AEDesc*) + 41
70 com.apple.AE 0x00007fff35ec569d aeProcessAppleEvent + 383
71 com.apple.HIToolbox 0x00007fff340bf4a0 AEProcessAppleEvent + 55
72 com.apple.AppKit 0x00007fff3235ccfa _DPSNextEvent + 2788
73 com.apple.AppKit 0x00007fff32af2e34 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044
74 com.apple.AppKit 0x00007fff3235184d -[NSApplication run] + 764
75 libqcocoa.dylib 0x000000012ad7062f QCocoaEventDispatcher::processEvents(QFlags) + 2495
76 QtCore 0x000000011a201acf QEventLoop::exec(QFlags) + 431
77 QtCore 0x000000011a206042 QCoreApplication::exec() + 130
78 QtWidgets.abi3.so 0x000000011aafa702 meth_QApplication_exec_(_object*, _object*) + 82
79 org.python.python 0x000000010fa6b0c2 cfunction_call_varargs + 290
80 org.python.python 0x000000010fa6aa85 _PyObject_MakeTpCall + 373
81 org.python.python 0x000000010fb39665 call_function + 533
82 org.python.python 0x000000010fb3646e _PyEval_EvalFrameDefault + 25678
83 org.python.python 0x000000010fa6b3d0 function_code_fastcall + 128
84 org.python.python 0x000000010fa6da9a method_vectorcall + 170
85 org.python.python 0x000000010fb3960c call_function + 444
86 org.python.python 0x000000010fb3646e _PyEval_EvalFrameDefault + 25678
87 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
88 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
89 org.python.python 0x000000010fb3960c call_function + 444
90 org.python.python 0x000000010fb36505 _PyEval_EvalFrameDefault + 25829
91 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
92 org.python.python 0x000000010fb2ff44 PyEval_EvalCode + 100
93 org.python.python 0x000000010fb2d332 builtin_exec + 626
94 org.python.python 0x000000010faa75ff cfunction_vectorcall_FASTCALL + 175
95 org.python.python 0x000000010fb3960c call_function + 444
96 org.python.python 0x000000010fb36505 _PyEval_EvalFrameDefault + 25829
97 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
98 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
99 org.python.python 0x000000010fb3960c call_function + 444
100 org.python.python 0x000000010fb36505 _PyEval_EvalFrameDefault + 25829
101 org.python.python 0x000000010fb3a454 _PyEval_EvalCodeWithName + 2804
102 org.python.python 0x000000010fa6b56e _PyFunction_Vectorcall + 270
103 org.python.python 0x000000010fa6adad PyVectorcall_Call + 109
104 org.python.python 0x000000010fb9ceb3 pymain_run_module + 195
105 org.python.python 0x000000010fb9c585 Py_RunMain + 1413
106 org.python.python 0x000000010fb9cbdf pymain_main + 223
107 org.python.python 0x000000010fb9caeb Py_Main + 43
108 edu.ucsf.cgl.ChimeraX 0x000000010fa3fdc8 main + 120
109 libdyld.dylib 0x00007fff5cd41015 start + 1
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff5ce92c02 kevent64 + 10
1 QtWebEngineCore 0x000000011eb94e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011eb94cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011eb28a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb32778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011eb33150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011eb32c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5ce92c02 kevent64 + 10
1 QtWebEngineCore 0x000000011eb94e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011eb94cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000122a61f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb8a2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011eab21db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb32778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011eb33150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011eb32cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 6:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb32778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011eb33150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011eb32cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 7:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff5ce91a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5d05a589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000011eb81e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000011fe395f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
6 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
7 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 8:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eab220f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 9:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5ce92c02 kevent64 + 10
1 QtWebEngineCore 0x000000011eb94e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011eb94cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb8a2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011eab21db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 11:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb8a2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011eab21db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb8a2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011eab21db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb8a2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011eb3276a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011eb33150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011eb32d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 14:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb8a2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011eab21db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb8a2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011eab21db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011eb1d62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011eae17cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011eb3ca7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 16:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff34dc6405 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff34dc5757 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff34dc4dd3 CFRunLoopRunSpecific + 483
5 com.apple.AppKit 0x00007fff32499fc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5ce881fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5ce87714 mach_msg + 60
2 QtWebEngineCore 0x000000011eb8a492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011eb8a2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011eb3276a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011eb32e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011eb32c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000011eb85e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5d059661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5d05950d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5d058bf9 thread_start + 13
Thread 18:
0 libsystem_kernel.dylib 0x00007fff5ce9228a __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff5d05920e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff5d058be9 start_wqthread + 13
Thread 19:
0 libsystem_pthread.dylib 0x00007fff5d058bdc start_wqthread + 0
1 ??? 0x41c4c7e1670428c3 0 + 4739132478810499267
Thread 20:
0 libsystem_pthread.dylib 0x00007fff5d058bdc start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fff9575c380 rcx: 0x000000010fef2a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010fef2a80 rsp: 0x000000010fef2a48
r8: 0x000000010fef2f48 r9: 0x0000000000008004 r10: 0x00007fff9575c3c8 r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x00007fbec7569e30 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff5ce91b66 rfl: 0x0000000000000286 cr2: 0x000000010fc817e0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x115015000 - 0x11512cff7 +libgfortran.3.dylib (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libgfortran.3.dylib
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0x7fff5c517000 - 0x7fff5c54fff7 libpcap.A.dylib (79.20.3) /usr/lib/libpcap.A.dylib
0x7fff5c59a000 - 0x7fff5c59dff7 libpmenergy.dylib (187.70.3) /usr/lib/libpmenergy.dylib
0x7fff5c59e000 - 0x7fff5c5a0fff libpmsample.dylib (187.70.3) /usr/lib/libpmsample.dylib
0x7fff5c5ce000 - 0x7fff5c5eaffb libresolv.9.dylib (65.1) /usr/lib/libresolv.9.dylib
0x7fff5c5ec000 - 0x7fff5c625ff3 libsandbox.1.dylib (765.70.2) /usr/lib/libsandbox.1.dylib
0x7fff5c626000 - 0x7fff5c638fff libsasl2.2.dylib (211.0.2) /usr/lib/libsasl2.2.dylib
0x7fff5c639000 - 0x7fff5c63aff3 libspindump.dylib (252) /usr/lib/libspindump.dylib
0x7fff5c63b000 - 0x7fff5c7ceff7 libsqlite3.dylib (274.8.1) /usr/lib/libsqlite3.dylib
0x7fff5c82a000 - 0x7fff5c87dffb libssl.35.dylib (22.50.3) /usr/lib/libssl.35.dylib
0x7fff5c926000 - 0x7fff5c937fff libsystemstats.dylib (403.50.9) /usr/lib/libsystemstats.dylib
0x7fff5c9a2000 - 0x7fff5ca02ff3 libusrtcp.dylib (1229.70.2) /usr/lib/libusrtcp.dylib
0x7fff5ca03000 - 0x7fff5ca06ffb libutil.dylib (51.20.1) /usr/lib/libutil.dylib
0x7fff5ca07000 - 0x7fff5ca14ff3 libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff5ca18000 - 0x7fff5caffffb libxml2.2.dylib (31.20) /usr/lib/libxml2.2.dylib
0x7fff5cb00000 - 0x7fff5cb28fff libxslt.1.dylib (15.16) /usr/lib/libxslt.1.dylib
0x7fff5cb29000 - 0x7fff5cb3bffb libz.1.dylib (70) /usr/lib/libz.1.dylib
0x7fff5cbd7000 - 0x7fff5cbdbff7 libcache.dylib (80) /usr/lib/system/libcache.dylib
0x7fff5cbdc000 - 0x7fff5cbe6ff3 libcommonCrypto.dylib (60118.50.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff5cbe7000 - 0x7fff5cbeefff libcompiler_rt.dylib (62) /usr/lib/system/libcompiler_rt.dylib
0x7fff5cbef000 - 0x7fff5cbf8ffb libcopyfile.dylib (146.50.5) /usr/lib/system/libcopyfile.dylib
0x7fff5cbf9000 - 0x7fff5cc7effb libcorecrypto.dylib (562.70.3) /usr/lib/system/libcorecrypto.dylib
0x7fff5cd06000 - 0x7fff5cd3fff7 libdispatch.dylib (913.60.3) /usr/lib/system/libdispatch.dylib
0x7fff5cd40000 - 0x7fff5cd5dff7 libdyld.dylib (551.5) /usr/lib/system/libdyld.dylib
0x7fff5cd5e000 - 0x7fff5cd5effb libkeymgr.dylib (28) /usr/lib/system/libkeymgr.dylib
0x7fff5cd5f000 - 0x7fff5cd6bff3 libkxld.dylib (4570.71.82.8) /usr/lib/system/libkxld.dylib
0x7fff5cd6c000 - 0x7fff5cd6cff7 liblaunch.dylib (1205.70.16) /usr/lib/system/liblaunch.dylib
0x7fff5cd6d000 - 0x7fff5cd71ffb libmacho.dylib (906) /usr/lib/system/libmacho.dylib
0x7fff5cd72000 - 0x7fff5cd74fff libquarantine.dylib (86.70.1) /usr/lib/system/libquarantine.dylib
0x7fff5cd75000 - 0x7fff5cd76ff3 libremovefile.dylib (45) /usr/lib/system/libremovefile.dylib
0x7fff5cd77000 - 0x7fff5cd8efff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib
0x7fff5cd8f000 - 0x7fff5cd8ffff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib
0x7fff5cd90000 - 0x7fff5ce19ff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib
0x7fff5ce1a000 - 0x7fff5ce1dffb libsystem_configuration.dylib (963.50.9) /usr/lib/system/libsystem_configuration.dylib
0x7fff5ce1e000 - 0x7fff5ce21ffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5ce22000 - 0x7fff5ce23fff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib
0x7fff5ce24000 - 0x7fff5ce2affb libsystem_dnssd.dylib (878.70.4) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5ce2b000 - 0x7fff5ce74ff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib
0x7fff5ce75000 - 0x7fff5ce9bff7 libsystem_kernel.dylib (4570.71.82.8) /usr/lib/system/libsystem_kernel.dylib
0x7fff5ce9c000 - 0x7fff5cee7fcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib
0x7fff5cee8000 - 0x7fff5cf07ff7 libsystem_malloc.dylib (140.50.7) /usr/lib/system/libsystem_malloc.dylib
0x7fff5cf08000 - 0x7fff5d038ff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib
0x7fff5d039000 - 0x7fff5d043ffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5d044000 - 0x7fff5d04dff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff5d04e000 - 0x7fff5d055ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib
0x7fff5d056000 - 0x7fff5d061fff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff5d062000 - 0x7fff5d065fff libsystem_sandbox.dylib (765.70.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5d066000 - 0x7fff5d067ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff5d068000 - 0x7fff5d06fff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5d070000 - 0x7fff5d084ff7 libsystem_trace.dylib (829.70.2) /usr/lib/system/libsystem_trace.dylib
0x7fff5d086000 - 0x7fff5d08bff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff5d08c000 - 0x7fff5d0b9fff libxpc.dylib (1205.70.16) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 6278
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=752.8M resident=0K(0%) swapped_out_or_unallocated=752.8M(100%)
Writable regions: Total=480.5M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=480.5M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 3
Activity Tracing 256K 2
CG backing stores 248K 3
CG image 184K 22
CoreAnimation 112K 22
CoreGraphics 8K 2
CoreImage 100K 23
CoreUI image data 3068K 35
CoreUI image file 216K 5
Foundation 4K 2
Image IO 16K 2
Kernel Alloc Once 8K 2
MALLOC 264.6M 168
MALLOC guard page 48K 11
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Mach message 24K 4
Memory Tag 242 12K 2
Memory Tag 251 36K 3
OpenGL GLSL 384K 6
STACK GUARD 80K 21
Stack 138.2M 22
Stack Guard 56.0M 2
VM_ALLOCATE 69.9M 56
__DATA 48.4M 481
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 284.6M 124
__TEXT 468.2M 460
__UNICODE 560K 2
mapped file 70.3M 118
shared memory 3008K 21
=========== ======= =======
TOTAL 1.4G 1599
TOTAL, minus reserved VM space 1.4G 1599
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/macbook/Desktop/model_01.pdb
Summary of feedback from opening /Users/macbook/Desktop/model_01.pdb
---
error | Non-ASCII character on line 2 of PDB file
warning | Ignored bad PDB record found on line 1
?"M?@@?S3
PDB file contains non-ASCII character or control character
OpenGL version: 4.1 INTEL-10.36.32
OpenGL renderer: Intel HD Graphics 5000 OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir6,2
Processor Name: Intel Core i5
Processor Speed: 1,3 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Memory: 4 GB
Boot ROM Version: 122.0.0.0.0
SMC Version (system): 2.13f15
Software:
System Software Overview:
System Version: macOS 10.13.6 (17G14042)
Kernel Version: Darwin 17.7.0
Time since boot: 2 days 14:49
Graphics/Displays:
Intel HD Graphics 5000:
Chipset Model: Intel HD Graphics 5000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0a26
Revision ID: 0x0009
Metal: Supported, feature set macOS GPUFamily1 v3
Displays:
Color LCD:
Display Type: LCD
Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus)
UI Looks like: 1440 x 900
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DisplayPort
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash opening PDB |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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