Opened 3 years ago

Last modified 3 years ago

#8424 assigned defect

devel bundle reloadModule

Reported by: sergio.rosalesc@… Owned by: Daniel Esteban Palma Igor
Priority: normal Milestone:
Component: Third Party Version:
Keywords: Cc: Eric Pettersen, Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.15.0-58-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.6.dev202302010904 (2023-02-01 09:04:26 UTC)
Description
devel bundle reloadModule True initialization True register True loadOnStart False
Missing or invalid "bundlePath" argument: File 'reloadModule' does not exist

Also, it cannot using nvidia driver (520 propietary)

Log:
Startup Messages  
---  
warnings | Unable to find icon for toolbar provider 'Dump Bead Data' in bundle
'ChimeraX-GenomeTools'  
Unable to find icon for toolbar provider 'Highlight' in bundle 'ChimeraX-
GenomeTools'  
Unable to find icon for toolbar provider 'Bed Models' in bundle 'ChimeraX-
GenomeTools'  
Unable to find icon for toolbar provider 'Bead Overlap' in bundle 'ChimeraX-
GenomeTools'  
Unable to find icon for toolbar provider 'Genome Distance' in bundle
'ChimeraX-GenomeTools'  
1 messages similar to the above omitted  
  
UCSF ChimeraX version: 1.6.dev202302010904 (2023-02-01)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
Successfully installed 'ChimeraX-XMAS==1.1.2'  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Requirement already satisfied: ChimeraX-AddH==2.1.3 in
./.local/share/ChimeraX/1.6/site-packages (2.1.3)  
Requirement already satisfied: ChimeraX-ArtiaX==0.3 in
./.local/share/ChimeraX/1.6/site-packages (0.3)  
Requirement already satisfied: ChimeraX-Clipper==0.20.0 in
./.local/share/ChimeraX/1.6/site-packages (0.20.0)  
Requirement already satisfied: ChimeraX-Cytoscape==0.1 in
./.local/share/ChimeraX/1.6/site-packages (0.1)  
Requirement already satisfied: ChimeraX-DevelExtras==0.4.2 in
./.local/share/ChimeraX/1.6/site-packages (0.4.2)  
Requirement already satisfied: ChimeraX-GenomeTools==0.9 in
./.local/share/ChimeraX/1.6/site-packages (0.9)  
Requirement already satisfied: ChimeraX-HKCage==1.3 in
./.local/share/ChimeraX/1.6/site-packages (1.3)  
Requirement already satisfied: ChimeraX-ISOLDE==1.6.dev0 in
./.local/share/ChimeraX/1.6/site-packages (1.6.dev0)  
Requirement already satisfied: MolecularDynamicsViewer==1.4 in
./.local/share/ChimeraX/1.6/site-packages (1.4)  
Requirement already satisfied: ChimeraX-NIHPresets==1.1.9 in
./.local/share/ChimeraX/1.6/site-packages (1.1.9)  
Requirement already satisfied: ChimeraX-PDBImages==1.1 in
./.local/share/ChimeraX/1.6/site-packages (1.1)  
Requirement already satisfied: ChimeraX-PhenixUI==1.0.5 in
./.local/share/ChimeraX/1.6/site-packages (1.0.5)  
Requirement already satisfied: ChimeraX-RIBFIND==0.2 in
./.local/share/ChimeraX/1.6/site-packages (0.2)  
Requirement already satisfied: ChimeraX-RMF==0.11 in
./.local/share/ChimeraX/1.6/site-packages (0.11)  
Requirement already satisfied: SEQCROW==1.5.14 in
./.local/share/ChimeraX/1.6/site-packages (1.5.14)  
Requirement already satisfied: ChimeraX-StarMap==1.1.70 in
./.local/share/ChimeraX/1.6/site-packages (1.1.70)  
Requirement already satisfied: ChimeraX-TestManager==0.3 in
./.local/share/ChimeraX/1.6/site-packages (0.3)  
Requirement already satisfied: ChimeraX-XMAS==1.1.2 in
./.local/share/ChimeraX/1.6/site-packages (1.1.2)  
Requirement already satisfied: ChimeraX-Atomic~=1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-AddH==2.1.3) (1.43.7)  
Requirement already satisfied: ChimeraX-Geometry~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-AddH==2.1.3) (1.3)  
Requirement already satisfied: ChimeraX-Hbonds~=2.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-AddH==2.1.3) (2.4)  
Requirement already satisfied: ChimeraX-Core~=1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-AddH==2.1.3)
(1.6.dev202302010904)  
Requirement already satisfied: ChimeraX-AtomSearch~=2.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-AddH==2.1.3) (2.0.1)  
Requirement already satisfied: ChimeraX-mmCIF~=2.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-AddH==2.1.3) (2.11)  
Requirement already satisfied: ChimeraX-MapData~=2.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (2.0)  
Requirement already satisfied: ChimeraX-BILD~=1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.0)  
Requirement already satisfied: ChimeraX-Log>=1.1.4 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.1.5)  
Requirement already satisfied: ChimeraX-SaveCommand>=1.5 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.5.1)  
Requirement already satisfied: ChimeraX-ModelPanel>=1.2.1 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.3.6)  
Requirement already satisfied: ChimeraX-Map~=1.1 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.1.4)  
Requirement already satisfied: starfile in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-ArtiaX==0.3) (0.4.11)  
Requirement already satisfied: geomdl in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-ArtiaX==0.3) (5.3.1)  
Requirement already satisfied: ChimeraX-IMOD~=1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.0)  
Requirement already satisfied: ChimeraX-MouseModes~=1.1 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.2)  
Requirement already satisfied: ChimeraX-Markers~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.0.1)  
Requirement already satisfied: ChimeraX-UI>=1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.26)  
Requirement already satisfied: ChimeraX-OpenCommand>=1.7 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.10)  
Requirement already satisfied: ChimeraX-Graphics~=1.1 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-ArtiaX==0.3) (1.1.1)  
Requirement already satisfied: superqt in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-ArtiaX==0.3) (0.4.1)  
Requirement already satisfied: ChimeraX-Arrays~=1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-Clipper==0.20.0) (1.1)  
Requirement already satisfied: ChimeraX-AtomicLibrary~=10.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-Clipper==0.20.0)
(10.0.3)  
Requirement already satisfied: matplotlib in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-GenomeTools==0.9) (3.6.3)  
Requirement already satisfied: ChimeraX-PresetMgr~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-NIHPresets==1.1.9)
(1.1)  
Requirement already satisfied: ChimeraX-Struts>=1.0.1,~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-NIHPresets==1.1.9)
(1.0.1)  
Requirement already satisfied: ChimeraX-StdCommands~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-PDBImages==1.1)
(1.10.1)  
Requirement already satisfied: ChimeraX-PDB~=2.6 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-PhenixUI==1.0.5) (2.6.13)  
Requirement already satisfied: ChimeraX-CheckWaters~=1.3 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-PhenixUI==1.0.5)
(1.3.1)  
Requirement already satisfied: Jinja2>=3.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-RIBFIND==0.2) (3.1.2)  
Requirement already satisfied: ribfind==2.0.2 in
./.local/share/ChimeraX/1.6/site-packages (from ChimeraX-RIBFIND==0.2) (2.0.2)  
Requirement already satisfied: Send2Trash in ./.local/share/ChimeraX/1.6/site-
packages (from SEQCROW==1.5.14) (1.8.0)  
Requirement already satisfied: scipy in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from SEQCROW==1.5.14) (1.9.3)  
Requirement already satisfied: psutil in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from SEQCROW==1.5.14) (5.9.4)  
Requirement already satisfied: pyparsing in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-StarMap==1.1.70) (3.0.9)  
Requirement already satisfied: pyqtgraph in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-StarMap==1.1.70) (0.13.1)  
Requirement already satisfied: flake8 in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-TestManager==0.3) (6.0.0)  
Requirement already satisfied: pyflakes in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-TestManager==0.3) (3.0.1)  
Requirement already satisfied: pydocstyle in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-TestManager==0.3) (6.3.0)  
Requirement already satisfied: mypy in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-TestManager==0.3) (0.991)  
Requirement already satisfied: seaborn in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-XMAS==1.1.2) (0.12.2)  
Requirement already satisfied: pandas in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-XMAS==1.1.2) (1.5.3)  
Requirement already satisfied: openpyxl in ./.local/share/ChimeraX/1.6/site-
packages (from ChimeraX-XMAS==1.1.2) (3.1.0)  
Requirement already satisfied: qtrangeslider in
./.local/share/ChimeraX/1.6/site-packages (from ChimeraX-XMAS==1.1.2) (0.1.5)  
Requirement already satisfied: numpy in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ribfind==2.0.2->ChimeraX-RIBFIND==0.2)
(1.23.5)  
Requirement already satisfied: biopython>=1.5 in
./.local/share/ChimeraX/1.6/site-packages (from ribfind==2.0.2->ChimeraX-
RIBFIND==0.2) (1.80)  
Requirement already satisfied: ChimeraX-PDBLibrary~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-
Atomic~=1.0->ChimeraX-AddH==2.1.3) (1.0.2)  
Requirement already satisfied: ChimeraX-ConnectStructure~=2.0 in
/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages (from ChimeraX-
Atomic~=1.0->ChimeraX-AddH==2.1.3) (2.0.1)  
Requirement already satisfied: ChimeraX-Nucleotides~=2.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-
Atomic~=1.0->ChimeraX-AddH==2.1.3) (2.0.3)  
Requirement already satisfied: ChimeraX-DataFormats~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-BILD~=1.0->ChimeraX-
ArtiaX==0.3) (1.2.3)  
Requirement already satisfied: ChimeraX-Surface~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-BILD~=1.0->ChimeraX-
ArtiaX==0.3) (1.0.1)  
Requirement already satisfied: ChimeraX-ChemGroup~=2.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-
Hbonds~=2.0->ChimeraX-AddH==2.1.3) (2.0.1)  
Requirement already satisfied: ChimeraX-MapSeries~=2.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-Map~=1.1->ChimeraX-
ArtiaX==0.3) (2.1.1)  
Requirement already satisfied: ChimeraX-MapFilter~=2.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-Map~=1.1->ChimeraX-
ArtiaX==0.3) (2.0.1)  
Requirement already satisfied: ChimeraX-IO~=1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-OpenCommand>=1.7->ChimeraX-
ArtiaX==0.3) (1.0.1)  
Requirement already satisfied: ChimeraX-Dssp~=2.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-StdCommands~=1.0->ChimeraX-
PDBImages==1.1) (2.0)  
Requirement already satisfied: ChimeraX-DistMonitor~=1.2 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-
StdCommands~=1.0->ChimeraX-PDBImages==1.1) (1.3.3)  
Requirement already satisfied: ChimeraX-MapFit~=2.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from ChimeraX-StdCommands~=1.0->ChimeraX-
PDBImages==1.1) (2.0)  
Requirement already satisfied: ChimeraX-SelInspector~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-UI>=1.0->ChimeraX-
ArtiaX==0.3) (1.0)  
Requirement already satisfied: MarkupSafe>=2.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from Jinja2>=3.0->ChimeraX-RIBFIND==0.2)
(2.1.2)  
Requirement already satisfied: mccabe<0.8.0,>=0.7.0 in
./.local/share/ChimeraX/1.6/site-packages (from flake8->ChimeraX-
TestManager==0.3) (0.7.0)  
Requirement already satisfied: pycodestyle<2.11.0,>=2.10.0 in
./.local/share/ChimeraX/1.6/site-packages (from flake8->ChimeraX-
TestManager==0.3) (2.10.0)  
Requirement already satisfied: cycler>=0.10 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from matplotlib->ChimeraX-GenomeTools==0.9)
(0.11.0)  
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from matplotlib->ChimeraX-GenomeTools==0.9)
(1.4.4)  
Requirement already satisfied: packaging>=20.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from matplotlib->ChimeraX-GenomeTools==0.9)
(23.0)  
Requirement already satisfied: python-dateutil>=2.7 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from matplotlib->ChimeraX-GenomeTools==0.9)
(2.8.2)  
Requirement already satisfied: pillow>=6.2.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from matplotlib->ChimeraX-GenomeTools==0.9)
(9.3.0)  
Requirement already satisfied: fonttools>=4.22.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from matplotlib->ChimeraX-GenomeTools==0.9)
(4.38.0)  
Requirement already satisfied: contourpy>=1.0.1 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from matplotlib->ChimeraX-GenomeTools==0.9)
(1.0.7)  
Requirement already satisfied: mypy-extensions>=0.4.3 in
./.local/share/ChimeraX/1.6/site-packages (from mypy->ChimeraX-
TestManager==0.3) (0.4.3)  
Requirement already satisfied: tomli>=1.1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from mypy->ChimeraX-TestManager==0.3)
(2.0.1)  
Requirement already satisfied: typing-extensions>=3.10 in
./.local/share/ChimeraX/1.6/site-packages (from mypy->ChimeraX-
TestManager==0.3) (4.4.0)  
Requirement already satisfied: et-xmlfile in ./.local/share/ChimeraX/1.6/site-
packages (from openpyxl->ChimeraX-XMAS==1.1.2) (1.1.0)  
Requirement already satisfied: pytz>=2020.1 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from pandas->ChimeraX-XMAS==1.1.2)
(2022.7.1)  
Requirement already satisfied: snowballstemmer>=2.2.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from pydocstyle->ChimeraX-
TestManager==0.3) (2.2.0)  
Requirement already satisfied: pygments>=2.4.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from superqt->ChimeraX-ArtiaX==0.3)
(2.14.0)  
Requirement already satisfied: qtpy>=1.1.0 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from superqt->ChimeraX-ArtiaX==0.3) (2.3.0)  
Requirement already satisfied: ChimeraX-ItemsInspection~=1.0 in /usr/lib/ucsf-
chimerax-daily/lib/python3.9/site-packages (from ChimeraX-
SelInspector~=1.0->ChimeraX-UI>=1.0->ChimeraX-ArtiaX==0.3) (1.0.1)  
Requirement already satisfied: six>=1.5 in /usr/lib/ucsf-chimerax-
daily/lib/python3.9/site-packages (from python-
dateutil>=2.7->matplotlib->ChimeraX-GenomeTools==0.9) (1.16.0)  
  

> cd "/home/drsergio/chimerax working folder"

Current working directory is: /home/drsergio/chimerax working folder  

> ui tool show "DevelExtras Tool"

> reloadModule True initialization True register True loadOnStart False

Missing or invalid "bundlePath" argument: File 'reloadModule' does not exist  

> reloadModule True initialization True register True loadOnStart False

Missing or invalid "bundlePath" argument: File 'reloadModule' does not exist  
Traceback (most recent call last):  
File "/home/drsergio/.local/share/ChimeraX/1.6/site-
packages/chimerax/devel_extras/gui.py", line 267, in start_tool  
bundle_info.start_tool(self.session, tool.name)  
AttributeError: 'NoneType' object has no attribute 'start_tool'  
  
AttributeError: 'NoneType' object has no attribute 'start_tool'  
  
File "/home/drsergio/.local/share/ChimeraX/1.6/site-
packages/chimerax/devel_extras/gui.py", line 267, in start_tool  
bundle_info.start_tool(self.session, tool.name)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 520.61.05
OpenGL renderer: NVIDIA GeForce RTX 2080 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.1, Qt 6.4.2
Qt runtime version: 6.4.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: ASUSTeK COMPUTER INC.
Model: WS-C621E-SAGE Series
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: none
CPU: 80 Intel(R) Xeon(R) Gold 6138 CPU @ 2.00GHz
Cache Size: 28160 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            93Gi       2.9Gi        86Gi        90Mi       3.2Gi        89Gi
	Swap:          2.0Gi          0B       2.0Gi

Graphics:
	02:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 41)	
	Subsystem: ASUSTeK Computer Inc. ASPEED Graphics Family [1043:86ed]	
	Kernel modules: ast

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.11.0
    backcall: 0.2.0
    biopython: 1.80
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.2
    charset-normalizer: 3.0.1
    ChimeraX-AddCharge: 1.5.8
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.8
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.3
    ChimeraX-Atomic: 1.43.7
    ChimeraX-AtomicLibrary: 10.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.20.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.dev202302010904
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-Cytoscape: 0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-DevelExtras: 0.4.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3.3
    ChimeraX-DockPrep: 1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-GenomeTools: 0.9
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.6.dev0
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.11
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.11
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.8
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-NIHPresets: 1.1.9
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10
    ChimeraX-PDB: 2.6.13
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBImages: 1.1
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PhenixUI: 1.0.5
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RIBFIND: 0.2
    ChimeraX-RMF: 0.11
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.1
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StarMap: 1.1.70
    ChimeraX-StdCommands: 1.10.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-TestManager: 0.3
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.26
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.6
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-XMAS: 1.1.2
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.2
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.6
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    entrypoints: 0.4
    et-xmlfile: 1.1.0
    executing: 1.2.0
    filelock: 3.9.0
    flake8: 6.0.0
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    geomdl: 5.3.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.0.0
    ipykernel: 6.19.2
    ipython: 8.7.0
    ipython-genutils: 0.2.0
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 7.4.8
    jupyter-core: 5.2.0
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    mccabe: 0.7.0
    MolecularDynamicsViewer: 1.4
    msgpack: 1.0.4
    mypy: 0.991
    mypy-extensions: 0.4.3
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    numexpr: 2.8.4
    numpy: 1.23.5
    openpyxl: 3.1.0
    openvr: 1.23.701
    packaging: 23.0
    pandas: 1.5.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 2.6.2
    prompt-toolkit: 3.0.36
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycodestyle: 2.10.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    pydocstyle: 6.3.0
    pyflakes: 3.0.1
    Pygments: 2.14.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.1
    PyQt6-Qt6: 6.4.2
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.2
    pyqtgraph: 0.13.1
    python-dateutil: 2.8.2
    pytz: 2022.7.1
    pyzmq: 25.0.0
    qtconsole: 5.4.0
    QtPy: 2.3.0
    QtRangeSlider: 0.1.5
    RandomWords: 0.4.0
    requests: 2.28.2
    ribfind: 2.0.2
    scipy: 1.9.3
    seaborn: 0.12.2
    Send2Trash: 1.8.0
    SEQCROW: 1.5.14
    setuptools: 65.1.1
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    starfile: 0.4.11
    superqt: 0.4.1
    tables: 3.7.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.9.0
    typing-extensions: 4.4.0
    urllib3: 1.26.14
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.12.0

Change History (1)

comment:1 by Eric Pettersen, 3 years ago

Cc: Eric Pettersen Tom Goddard added
Component: Unassigned → Third Party
Owner: set to Daniel Esteban Palma Igor
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → devel bundle reloadModule

Hi Sergio,

I believe the "devel bundle" commands needs the path to the directory of the bundle you are trying to reload, immediately after "devel bundle".

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

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