Timeline



Jun 19, 2022:

2:15 PM Ticket #7128 (Crash saving STL) created by j.kenkel@…
[…] 7x2f.pdb
7:52 AM Ticket #7127 (problem running AlfaFold Prediction) created by rubinjr@…
[…]
5:58 AM Ticket #7126 (Unknown crash) created by chimerax-bug-report@…
[…]

Jun 18, 2022:

10:54 PM Ticket #7125 (Crash in Qt on exit) created by chimerax-bug-report@…
[…]
9:16 PM Ticket #7124 (glTexImage2D: out of memory) created by 196891@…
[…]
9:53 AM Ticket #7123 (Basic Actions saving session: 'QEventLoop' object has no attribute 'exec_') created by marta.carroni@…
[…]

Jun 17, 2022:

5:16 PM ChangeLog edited by Elaine Meng
(diff)
3:29 PM Ticket #7122 (FindHBond: atom unexpectedly has no neighbors) created by chimerax-bug-report@…
[…]
12:56 PM ChangeLog edited by pett
(diff)
11:40 AM Ticket #7113 (Session save: function 'set_pbgroup_py_instance' not found) closed by pett
fixed: Hi Martin, Thanks for reporting this problem. I have fixed it now …
10:52 AM Ticket #7121 (Crash in event loop) closed by pett
can't reproduce
10:42 AM Ticket #7121 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:37 AM Ticket #7120 (Error from second "vr true") closed by Tom Goddard
can't reproduce: No clues as to what caused the crash in the event loop. At the end of …
9:09 AM Ticket #7112 (Crash in clipper associate) closed by Tristan Croll
can't reproduce: Chances are this is a duplicate of #6219 (which is fixed for 1.4), but …
9:06 AM Ticket #7117 (Didn't find section 'Main' in tab 'ISOLDE') closed by Tristan Croll
fixed: Thanks for the report. This happens on the very first install (via the …
8:57 AM Ticket #7119 (Crash creating QWebEngineProfile at startup) closed by pett
duplicate
8:56 AM Ticket #7118 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce
8:53 AM Ticket #7116 (Crash in event loop) closed by pett
can't reproduce
7:30 AM Ticket #7120 (Error from second "vr true") created by chimerax-bug-report@…
[…]
3:29 AM Ticket #7119 (Crash creating QWebEngineProfile at startup) created by chimerax-bug-report@…
[…]
2:49 AM Ticket #7118 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
2:44 AM Ticket #7117 (Didn't find section 'Main' in tab 'ISOLDE') created by joel.mackay@…
[…]
12:47 AM Ticket #7116 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jun 16, 2022:

5:59 PM Ticket #1898 (Option to number based on reference sequence) closed by pett
fixed: Okay, I went ahead and implemented your suggestion rather than the …
4:40 PM Ticket #7115 (ChimeraX bug report submission) closed by Zach Pearson
duplicate: Duplicate of #7114.
4:33 PM Ticket #7115 (ChimeraX bug report submission) created by kamadak@…
[…]
4:30 PM Ticket #7114 (Draw status bar: Attempt to retrieve context when no valid context) created by kamadak@…
[…]
4:17 PM 2022-6-16 edited by Scooter Morris
(diff)
4:11 PM Dev2022-6-27 edited by Zach Pearson
(diff)
4:07 PM DeveloperMeetings edited by Zach Pearson
(diff)
4:07 PM 2022-6-23 created by Zach Pearson
3:29 PM Ticket #7113 (Session save: function 'set_pbgroup_py_instance' not found) created by martin.pacesa@…
[…]
3:26 PM 2022-6-16 edited by Scooter Morris
(diff)
3:16 PM 2022-6-16 edited by Scooter Morris
(diff)
3:11 PM 2022-6-16 edited by Scooter Morris
(diff)
2:43 PM Ticket #7112 (Crash in clipper associate) created by chimerax-bug-report@…
[…]
1:21 PM Ticket #7100 (ChimeraX is not starting after the successful installation.) closed by Greg Couch
nonchimerax: We have no experience with niceDCV. It looks promising. And for …
1:11 PM 2022-6-16 edited by Tom Goddard
(diff)
12:21 PM Ticket #7110 (Coordset not recorded) closed by Tom Goddard
not a bug: You need to put a wait command after your coordset command in the …
10:30 AM Ticket #7111 (Cannot save command history) closed by pett
nonchimerax: User's home directory became a read-only file system in mid session!
10:21 AM Ticket #7111 (Cannot save command history) created by chimerax-bug-report@…
[…]
8:52 AM Ticket #7110 (Coordset not recorded) created by bssfh@…
[…]
8:38 AM Ticket #7109 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:36 AM Ticket #7108 (Crash using File→Open on Windows) closed by pett
can't reproduce: Hi Tabassum, Did this crash occur while you were using the File→Open …
8:33 AM Ticket #7107 (Crash in QMainWindow::removeDockWidget() closed by pett
can't reproduce: Shouldn't there be a Python stack trace too? And a log from the crash?
7:12 AM Ticket #7109 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
12:53 AM Ticket #7108 (Crash using File→Open on Windows) created by tabassumkhair.barbhuiya@…
[…]

Jun 15, 2022:

8:32 PM Ticket #7107 (Crash in QMainWindow::removeDockWidget() created by chimerax-bug-report@…
[…]
7:40 PM Ticket #7106 (Session files registered to ChimeraX 1.3 instead of 1.4 on Windows) created by goddard@…
[…]
7:16 PM Ticket #7105 (Menus are truncated at the bottom on Windows 11) created by jihmailed@…
Jonathan Jih reports that menu panes are truncated in ChimeraX 1.4 on …
7:09 PM Ticket #7104 (Side view is closed when any session is opened) created by jihmailed@…
Jonathan Jih reports that side view disappears whenever he loads a …
5:30 PM Ticket #7103 (Volume Viewer after session restore: wrapped C/C++ object of type ...) closed by Tom Goddard
fixed: Fixed. Made code ignore volume viewer resize callback if volume …
3:21 PM Ticket #6828 ('DefaultApi' object has no attribute 'newer_versions') closed by Zach Pearson
fixed: Daily build is from 2022-01-22, while this error should be fixed in …
3:04 PM Ticket #6978 (Blocking not honored for web jobs) closed by Zach Pearson
fixed: OK, that seemed to work.
2:46 PM Ticket #6978 (Blocking not honored for web jobs) reopened by pett
Is there a particular reason you are doing kw.pop('blocking', False) …
2:33 PM Ticket #7103 (Volume Viewer after session restore: wrapped C/C++ object of type ...) created by jihmailed@…
[…]
1:12 PM Ticket #6978 (Blocking not honored for web jobs) closed by Zach Pearson
fixed: Fixed in …
1:04 PM ChangeLog edited by Elaine Meng
(diff)
11:41 AM Ticket #7102 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:28 AM Ticket #7102 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
11:21 AM Ticket #7101 (Memory leak opening and closing atomic models) created by goddard@…
[…] test_memleak.py
10:35 AM Ticket #7099 (Updateing OS from Ubuntu 18.04. Where to go?) closed by pett
invalid
10:25 AM Ticket #7100 (ChimeraX is not starting after the successful installation.) created by akopokov@…
[…] X2go_session_error.PNG
10:18 AM Ticket #7099 (Updateing OS from Ubuntu 18.04. Where to go?) created by jacob_r_anderson@…
[…]
9:58 AM Ticket #7098 (Expose event drawing status line on Linux: glClear: invalid operation) closed by Tom Goddard
can't reproduce: Have seen the expose event drawing the status line cause OpenGL errors …
9:29 AM Ticket #7097 (Crash in event loop after opening 6000+ BILD objects) closed by pett
can't reproduce
7:17 AM Ticket #7098 (Expose event drawing status line on Linux: glClear: invalid operation) created by chimerax-bug-report@…
[…]
5:42 AM Ticket #7097 (Crash in event loop after opening 6000+ BILD objects) created by chimerax-bug-report@…
[…]

Jun 14, 2022:

5:12 PM Ticket #7096 (ChimeraX 1.4 update panel link gets generic Linux version instead of ...) created by goddard@…
[…]
11:59 AM Ticket #7095 (Solidify ChimeraX app name on Windows) created by Zach Pearson
In our last developer meeting we discussed the name of ChimeraX on …
11:57 AM Ticket #7094 (RFE: Persist tasks across ChimeraX sessions) created by Zach Pearson
It should be possible for a user to start a job, close ChimeraX, …
11:18 AM Dev2022-6-27 edited by Tom Goddard
(diff)
11:17 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:16 AM Dev2022-6-27 created by Tom Goddard
11:13 AM 2022-6-16 created by Tom Goddard
11:11 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:08 AM Ticket #7093 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:47 AM Ticket #7093 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
9:17 AM Ticket #7092 (Crash in event loop after session opened) closed by pett
can't reproduce
9:13 AM Ticket #7092 (Crash in event loop after session opened) created by chimerax-bug-report@…
[…]
9:03 AM Ticket #7091 (Add charge: Could not come up with unique atom name in mega-residue) closed by pett
duplicate: Already fixed by treating UNK as ALA. This structure is hopeless …
8:53 AM Ticket #7088 (Crash in event loop) closed by pett
can't reproduce
8:52 AM Ticket #7087 (Unknown problem) closed by pett
not a bug: No actual problem reported.
3:12 AM Ticket #7091 (Add charge: Could not come up with unique atom name in mega-residue) created by chimerax-bug-report@…
[…]
2:20 AM Ticket #7090 (Toolbar buttons not created when ISOLDE installed) created by sean.connell@…
[…]
1:57 AM Ticket #7089 (Toolbar buttons not added when bundle installed) created by Tristan Croll
[…]
12:02 AM Ticket #7088 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jun 13, 2022:

11:12 PM Dev2022-6-16 edited by Zach Pearson
(diff)
10:57 PM Dev2022-6-16 edited by Zach Pearson
(diff)
5:06 PM Ticket #7085 (NaN in surface calculation) closed by Tom Goddard
fixed: Fixed in tomorrow's ChimeraX daily build. The morph code incorrectly …
4:17 PM Ticket #7087 (Unknown problem) created by chimerax-bug-report@…
[…]
3:29 PM Dev2022-6-12 edited by Zach Pearson
(diff)
3:29 PM Dev2022-6-12 edited by Zach Pearson
(diff)
3:27 PM Dev2022-6-12 edited by Zach Pearson
(diff)
3:24 PM Dev2022-6-12 edited by Zach Pearson
(diff)
3:20 PM Dev2022-6-12 edited by Zach Pearson
(diff)
12:10 PM Ticket #7086 (AlphaFold results: File is not a zip file) closed by Tom Goddard
can't reproduce: ChimeraX got a message that the download of results.zip from an …
12:00 PM Dev2022-6-12 edited by Zach Pearson
(diff)
11:42 AM Dev2022-6-12 edited by Zach Pearson
(diff)
11:05 AM Ticket #7086 (AlphaFold results: File is not a zip file) created by chimerax-bug-report@…
[…]
10:22 AM Dev2022-6-12 edited by pett
(diff)
9:57 AM Ticket #7085 (NaN in surface calculation) created by ryan.kissinger1@…
[…]
9:26 AM Ticket #7083 (Dead pseudobond group) closed by pett
can't reproduce: This will be a lot easier to debug in 1.4
9:19 AM Ticket #7082 (Crash in event loop) closed by pett
can't reproduce
9:14 AM Ticket #7080 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:08 AM Ticket #7078 (Problem restoring clip caps when volume surface not restored) closed by pett
duplicate: Duplicate of #6265
8:56 AM Ticket #7084 (Crash in floating-point multiply) created by maru.jaimegarza@…
[…]
8:37 AM Ticket #7083 (Dead pseudobond group) created by chimerax-bug-report@…
[…]
7:48 AM Ticket #7082 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:42 AM Ticket #7081 (ChimeraX 1.4 is "downgrade") created by Tristan Croll
[…]

Jun 12, 2022:

11:41 PM Ticket #7080 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
11:05 PM Ticket #7079 (Crash checking toolshed) created by chimerax-bug-report@…
[…]
5:43 PM Ticket #7078 (Problem restoring clip caps when volume surface not restored) created by chimerax-bug-report@…
[…]
9:19 AM ChangeLog edited by Elaine Meng
(diff)

Jun 10, 2022:

6:32 PM Ticket #7077 (Remove distutils) created by Zach Pearson
It's probably enough to from setuptools import distutils in …
5:23 PM ChangeLog edited by Tom Goddard
(diff)
1:20 PM Ticket #7074 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
duplicate: Duplicate of #7072.
1:19 PM Ticket #7073 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
duplicate: Duplicate of #7072.
1:16 PM Ticket #7072 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
can't reproduce: Looks like ChimeraX gave this error on startup trying to draw the …
1:11 PM Ticket #7076 (Registration: month not in months list) created by chimerax-bug-report@…
[…]
1:04 PM Ticket #7071 (Capturing thumbnail image: Attempt to retrieve context when no valid ...) closed by Tom Goddard
can't reproduce: Capturing an image made the graphics context current without errors, …
1:00 PM Ticket #7070 (Access violation drawing new frame in glBufferData() on Windows) closed by Tom Goddard
nonchimerax: OpenGL graphics driver crash in glBufferData() on old laptop with AMD …
10:43 AM Ticket #7068 (Crash in event loop) closed by pett
can't reproduce
8:03 AM Ticket #7075 (Crash saving atomic session state) created by jose.soto@…
[…]
6:47 AM Ticket #7074 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:47 AM Ticket #7073 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:40 AM Ticket #7072 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:38 AM Ticket #7071 (Capturing thumbnail image: Attempt to retrieve context when no valid ...) created by chimerax-bug-report@…
[…]
4:57 AM Ticket #7070 (Access violation drawing new frame in glBufferData() on Windows) created by chimerax-bug-report@…
[…]
3:24 AM Ticket #7069 (Surface session restore: updaters is None) created by chimerax-bug-report@…
[…]
2:36 AM Ticket #7068 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:21 AM ChangeLog edited by Greg Couch
(diff)

Jun 9, 2022:

5:06 PM Ticket #7067 (Save dialog enhancement) created by jack.stevenson@…
[…] Screen Shot 2022-06-09 at 17.02.51.png
4:46 PM Ticket #7062 (Crash dragging/dropping on color panel) closed by pett
can't reproduce
4:44 PM Ticket #7061 (fork failure) closed by pett
nonchimerax: Was using 9.1GB
4:42 PM Ticket #7060 (Read pseudobonds: syntax error should not produce traceback) closed by pett
duplicate: Duplicate of #6531
4:36 PM NTTData edited by Tom Goddard
(diff)
4:35 PM NIAID2022 created by Tom Goddard
4:32 PM Dev2022-6-12 edited by Zach Pearson
(diff)
4:32 PM Dev2022-6-12 edited by Zach Pearson
(diff)
4:26 PM Ticket #7059 (Crash getting atomic session state) closed by pett
can't reproduce
4:09 PM Ticket #7066 (Douse tool enhancements) created by pett
- Default representation for 7rtb is sphere. To best see the …
3:54 PM ChangeLog edited by pett
(diff)
3:08 PM Ticket #7065 (Smarter display of Updates) created by pett
It would be good if the Updates tool only showed itself if updates are …
3:05 PM Ticket #7064 (Show bundle release notes in Updates) created by pett
It would be good to show the Release Notes section (multiple section …
2:38 PM 2022-6-9 edited by Tom Goddard
(diff)
2:35 PM 2022-6-9 edited by Tom Goddard
(diff)
2:35 PM 2022-6-9 edited by Tom Goddard
(diff)
2:00 PM NTTData edited by Elaine Meng
(diff)
1:59 PM NTTData edited by Elaine Meng
(diff)
1:54 PM Ticket #7063 (RFE: Decouple core and app version numbers) created by Zach Pearson
In the group meeting today Greg suggested having an RFE on this for …
1:39 PM NTTData edited by Elaine Meng
(diff)
12:38 PM Ticket #7062 (Crash dragging/dropping on color panel) created by chimerax-bug-report@…
[…]
12:26 PM Ticket #7061 (fork failure) created by chimerax-bug-report@…
[…]
9:55 AM Ticket #7058 (Deleted options still getting callbacks) closed by pett
duplicate
9:48 AM Ticket #7057 (Crash in event loop in SLSIsDisplayChangedSeedValid) closed by pett
can't reproduce
9:45 AM Ticket #7056 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
9:36 AM Ticket #7060 (Read pseudobonds: syntax error should not produce traceback) created by chimerax-bug-report@…
[…]
2:16 AM Ticket #7059 (Crash getting atomic session state) created by chimerax-bug-report@…
[…]
1:07 AM Ticket #7058 (Deleted options still getting callbacks) created by chimerax-bug-report@…
[…]
12:18 AM Ticket #7057 (Crash in event loop in SLSIsDisplayChangedSeedValid) created by chimerax-bug-report@…
[…]

Jun 8, 2022:

11:30 PM Ticket #7056 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
5:55 PM Ticket #7055 (AlphaFold database PAE fetch fails with lowercase uniprot id) closed by Tom Goddard
fixed: Fixed. Made uniprot id argument parsing always return upper case.
5:53 PM Ticket #7055 (AlphaFold database PAE fetch fails with lowercase uniprot id) created by goddard@…
[…]
4:20 PM Ticket #6621 (Show pseudobonds between all adjacent residues colored by AlphaFold ...) closed by Tom Goddard
fixed: I added a command to make the colored pseudobonds […] The …
1:00 PM Ticket #7053 (Session restore: invalid load key, '\x04') closed by pett
duplicate
12:25 PM Ticket #7054 (Deiconifying ChimeraX after help viewer deleted gives error) created by goddard@…
[…]
12:12 PM Ticket #7053 (Session restore: invalid load key, '\x04') created by chimerax-bug-report@…
[…]
10:59 AM Ticket #7052 (Crash opening PDB file) closed by pett
can't reproduce
10:50 AM Ticket #7052 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
10:05 AM Ticket #6837 (Have undocked tools forward keystrokes to command line) closed by pett
fixed: Well, sort of fixed. I re-enabled keystroke forwarding for …
9:10 AM Ticket #7044 (kerning) closed by pett
fixed: Excellent! --Eric
9:04 AM Ticket #7051 (Sequence viewer infinite recursion) closed by pett
can't reproduce
9:03 AM Ticket #7050 (Crash during color panel drag/drop) closed by pett
can't reproduce
9:00 AM Ticket #7049 (Crash in event loop) closed by pett
can't reproduce
8:58 AM Ticket #7048 (Crash in event loop) closed by pett
can't reproduce
8:43 AM Ticket #7047 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce
3:22 AM Ticket #7051 (Sequence viewer infinite recursion) created by chimerax-bug-report@…
[…]
2:51 AM Ticket #7050 (Crash during color panel drag/drop) created by chimerax-bug-report@…
[…]
2:10 AM Ticket #7049 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jun 7, 2022:

6:11 PM Ticket #7048 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:07 PM Ticket #7047 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
5:44 PM Ticket #7045 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: This error drawing the status line on an expose event has been …
5:35 PM Ticket #7046 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
5:31 PM Ticket #7046 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:07 PM Ticket #7045 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
1:28 PM Ticket #7044 (kerning) created by jack.stevenson@…
[…] Screen Shot 2022-06-07 at 13.27.04.png
11:33 AM ChangeLog edited by Elaine Meng
(diff)
10:14 AM Dev2022-6-16 created by Tom Goddard
10:14 AM Dev2022-6-12 created by Tom Goddard
10:12 AM 2022-6-9 created by Tom Goddard
10:11 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:18 AM Ticket #7043 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) closed by pett
duplicate: Hi Fadwa, Thanks for reporting this problem. It has been fixed in …
9:14 AM Ticket #7042 (Unknown crash) closed by pett
can't reproduce: Looks like a crash in the runtime loader. No Python traceback.
9:11 AM Ticket #7041 (Unknown crash) closed by pett
can't reproduce: Looks like the process was forking and was already at 9GB
9:08 AM Ticket #7040 (multiprocessing) closed by pett
not a bug: Hi Shubham, What you are trying to do will not work because creating …
8:52 AM Ticket #7039 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:50 AM Ticket #7038 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:48 AM Ticket #7037 (Crash in event loop) closed by pett
can't reproduce
6:40 AM Ticket #7043 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) created by fatmaouf@…
[…] log_chimeraXerror.txt
5:39 AM Ticket #7042 (Unknown crash) created by chimerax-bug-report@…
[…]
5:09 AM Ticket #7041 (Unknown crash) created by chimerax-bug-report@…
[…]
4:48 AM Ticket #7040 (multiprocessing) created by sdramgoo@…
[…]
3:59 AM Ticket #7039 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

Jun 6, 2022:

10:27 PM Ticket #7038 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
8:31 PM Ticket #7037 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:49 PM ChangeLog edited by Elaine Meng
(diff)
6:45 PM ChangeLog edited by Elaine Meng
(diff)
6:42 PM Ticket #7025 (Attempt to log command for deleted bond rotation) closed by Tom Goddard
fixed: Fixed. The traceback was from closing the session while rotating a …
5:16 PM Ticket #5991 (cross-eyed stereo) closed by Tom Goddard
fixed: Done. Added in daily build, not in ChimeraX 1.4. Added "camera …
4:26 PM Ticket #7036 (Add surface invert command) closed by Tom Goddard
fixed: Added surface invertShown command.
4:25 PM Ticket #7036 (Add surface invert command) created by xdai@…
Port surface invert shown command from Chimera to ChimeraX. This is …
4:09 PM Dev2022-6-6 edited by Tom Goddard
(diff)
1:57 PM Ticket #7035 (Docked sequence viewer panels made main window 16000 pixels high) created by chimerax-bug-report@…
[…]
12:08 PM Dev2022-6-6 edited by Zach Pearson
(diff)
11:30 AM Ticket #7033 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: Hi Michael, Thanks for reporting this problem. We believe it is …
11:26 AM Ticket #7032 (Unknown crash) closed by pett
can't reproduce
11:23 AM Ticket #7031 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:21 AM Ticket #7030 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:19 AM Ticket #7028 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:12 AM Ticket #7027 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:11 AM Ticket #7026 (No space left on device) closed by pett
nonchimerax
11:02 AM Ticket #7024 (Crash in Residue::ordered_min_backbone_atom_names()) closed by pett
can't reproduce: Would really need the PDB file in order to track this down.
8:38 AM Ticket #7034 (Preview Toolshed down) created by Tristan Croll
[…]
7:47 AM Ticket #7033 (Crash using File→Open on Windows and/or in return statement) created by weberm@…
[…]
7:36 AM Ticket #7032 (Unknown crash) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #7031 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
5:16 AM Ticket #7030 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:12 AM Ticket #6996 (OpenMMException: Error uploading array TabulatedFunction) closed by Tristan Croll
duplicate: Ancient low-end GPU ran out of memory. Keeping related ticket #6998
4:06 AM Ticket #6999 (OpenMMException: Error uploading array TabulatedFunction) closed by Tristan Croll
limitation: Hi Dennis, I'm afraid the problem here is that your hardware is simply …

Jun 5, 2022:

7:25 PM Ticket #7028 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
7:04 PM Ticket #7027 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:54 AM Ticket #7026 (No space left on device) created by chimerax-bug-report@…
[…]

Jun 4, 2022:

7:48 PM Ticket #7025 (Attempt to log command for deleted bond rotation) created by chimerax-bug-report@…
[…]
5:24 AM Ticket #7024 (Crash in Residue::ordered_min_backbone_atom_names()) created by chimerax-bug-report@…
[…]

Jun 3, 2022:

5:48 PM Ticket #7023 (Graphics crash, macOS 11.6.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
4:43 PM ChangeLog edited by Elaine Meng
(diff)
4:40 PM Ticket #7019 (Save tool position: TypeError: int() argument must be a string, a ...) closed by pett
fixed
1:53 PM Milestone 1.4 completed
== New Features == * Compute charges: A command to calculate and …
12:30 PM Ticket #7023 (Graphics crash, macOS 11.6.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
11:47 AM Ticket #7022 (Crash using File→Open on Windows) closed by pett
can't reproduce: 1.3
11:35 AM Ticket #7022 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]
11:18 AM Ticket #7021 (Save TIFF, not TIFF stack) closed by pett
not a bug: Hi Jing, In order to save a TIFF image you have to select "TIFF …
10:16 AM Ticket #7002 (GL.glActiveTexture(): access violation) closed by Tom Goddard
can't reproduce: Looks like a graphics driver crash in bind_texture() on RTX 3070 Ti on …
9:43 AM Ticket #7014 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:37 AM Ticket #7012 (No space left on device) closed by pett
nonchimerax
9:31 AM Ticket #7011 (Crash in event loop) closed by pett
can't reproduce
9:02 AM Ticket #7005 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:59 AM Ticket #7004 (Crash in event loop) closed by pett
can't reproduce: 1.2.5
8:56 AM Ticket #7003 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
8:14 AM Ticket #7021 (Save TIFF, not TIFF stack) created by jing.16.liu@…
[…]
6:26 AM Ticket #7020 (Crash generating UUID) created by chimerax-bug-report@…
[…]

Jun 2, 2022:

11:59 PM Ticket #7019 (Save tool position: TypeError: int() argument must be a string, a ...) created by goddard@…
[…]
11:48 PM Ticket #6991 (self._positions is None after model ID changed and closed) closed by Tom Goddard
fixed: Fixed. Made volume code that closes volume surfaces do it correctly …
11:01 PM Ticket #7001 (Crash in event loop after labeling) closed by Tom Goddard
can't reproduce: Not clear that the event loop crash had anything to do with the last …
10:15 PM Ticket #7018 (Port "surface transform" command to scale surfaces) closed by Tom Goddard
fixed: Done. Added "surface transform" command to ChimeraX daily builds, not …
10:13 PM Ticket #7018 (Port "surface transform" command to scale surfaces) created by mpm896@…
Begin forwarded message: From: "Martinez, Matthew via ChimeraX-users" …
6:26 PM Ticket #7000 (Crash in event loop after session opened) closed by pett
can't reproduce
6:19 PM Ticket #6997 (OpenMMException: Error uploading array TabulatedFunction) closed by pett
duplicate
6:15 PM Ticket #6995 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
6:13 PM Ticket #6994 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
6:11 PM Ticket #6993 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) closed by pett
duplicate
6:09 PM Ticket #7017 (networkx: no libbz2) created by murpholinox@…
[…]
5:46 PM Ticket #6990 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
2:01 PM Ticket #7016 (RFE: alignment for medical images (DICOM etc.)) created by Elaine Meng
Are there quick methods that can be applied to overlay two medical …
1:36 PM DeveloperMeetings edited by Zach Pearson
(diff)
1:36 PM Dev2022-6-6 created by Zach Pearson
1:35 PM Dev2022-6-2 edited by Zach Pearson
(diff)
1:30 PM Ticket #7015 (DICOM: was "airways" preset always so dim?) created by Elaine Meng
I wonder if something changed with the airways preset (from clicking …
1:27 PM Ticket #7014 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
12:38 PM Ticket #7013 (DICOM: RTSTRUCT not within the proper study in models hierarchy) created by Elaine Meng
For Head-Neck Cetuximab collection, patient ID 0522c0027, there are 3 …
12:26 PM 2022-6-2 edited by Tom Goddard
(diff)
8:24 AM Ticket #7012 (No space left on device) created by chimerax-bug-report@…
[…]

Jun 1, 2022:

9:28 PM Ticket #7011 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:03 PM Ticket #7010 (Crash forking process) created by rebecca.gorrell@…
[…]
4:31 PM Ticket #7009 (Toolshed crash trying to get bundle's module) created by chimerax-bug-report@…
[…]
12:58 PM Ticket #6982 (Segger session save: invalid literal for int() with base 10) closed by Tom Goddard
fixed: Fixed in ChimeraX 1.5, not in 1.4. Saving session failed because …
12:27 PM Ticket #7008 (ChimeraX nogui mode: AttributeError: 'UI' object has no attribute ...) closed by Tom Goddard
fixed: Fixed. In nogui mode session.ui is a different class that does not …
12:20 PM Ticket #7008 (ChimeraX nogui mode: AttributeError: 'UI' object has no attribute ...) created by Tom Goddard
$ cx --nogui Traceback (most recent call last): File …
9:48 AM Ticket #7007 (Long atom spec crashes ChimeraX) created by wenxiang.cao@…
[…]
6:46 AM Ticket #7006 (Crash running registration dialog) created by chimerax-bug-report@…
[…]
12:24 AM Ticket #7005 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

May 31, 2022:

10:28 PM Ticket #7004 (Crash in event loop) created by chimerax-bug-report@…
[…]
10:12 PM Modern ChimeraX (Technical) - 26 May.pdf attached to 2022-5-26 by Zach Pearson
9:56 PM 2022-6-2 created by Tom Goddard
9:54 PM 2022-5-26 edited by Tom Goddard
(diff)
9:46 PM DeveloperMeetings edited by Tom Goddard
(diff)
9:23 PM Ticket #6983 (Graphics crash, macOS 12.2.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. Running ISOLDE simulation.
9:53 AM Ticket #7003 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
9:35 AM Ticket #7002 (GL.glActiveTexture(): access violation) created by chimerax-bug-report@…
[…]
8:28 AM Ticket #7001 (Crash in event loop after labeling) created by chimerax-bug-report@…
[…]
7:42 AM Ticket #7000 (Crash in event loop after session opened) created by chimerax-bug-report@…
[…]
4:59 AM Ticket #6999 (OpenMMException: Error uploading array TabulatedFunction) created by ddanneck@…
[…]
4:44 AM Ticket #6998 (ISOLDE: detect and block use of under-resourced GPUs) created by chimerax-bug-report@…
[…]
4:37 AM Ticket #6997 (OpenMMException: Error uploading array TabulatedFunction) created by chimerax-bug-report@…
[…]
4:32 AM Ticket #6996 (OpenMMException: Error uploading array TabulatedFunction) created by chimerax-bug-report@…
[…]
3:46 AM Ticket #6995 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:28 AM Ticket #6994 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
2:53 AM Ticket #6993 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) created by chimerax-bug-report@…
[…]
1:37 AM Ticket #6992 (Session restore: cannot peek() on Dropbox file drop) created by chimerax-bug-report@…
[…]

May 30, 2022:

9:04 PM Ticket #6991 (self._positions is None after model ID changed and closed) created by chimerax-bug-report@…
[…]
8:27 PM Ticket #6990 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
12:38 PM Ticket #6989 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: 1.2.5
9:58 AM Ticket #6989 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
6:30 AM Ticket #6988 (RFE: have warnings reveal log if tabbed) created by Tristan Croll
[…]

May 29, 2022:

9:38 PM Ticket #6987 (Crash using File→Open on Windows) created by k.satyamurthy@…
[…]
3:20 PM Ticket #6984 (save_command bundle fails to initialize when no Qt available) closed by pett
fixed
10:59 AM Ticket #6986 (Crash creating QWebEngineProfile) closed by pett
duplicate
10:31 AM Ticket #6985 (Crash in Qt on exit) closed by pett
can't reproduce
8:21 AM Ticket #6986 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]
8:01 AM Ticket #6985 (Crash in Qt on exit) created by chimerax-bug-report@…
[…]

May 28, 2022:

10:15 PM Ticket #6984 (save_command bundle fails to initialize when no Qt available) created by Greg Couch
I was testing the CentOS 9 singularity build and ChimeraX gives …
1:26 PM Ticket #6983 (Graphics crash, macOS 12.2.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]

May 27, 2022:

10:39 PM Ticket #6982 (Segger session save: invalid literal for int() with base 10) created by chimerax-bug-report@…
[…]
7:51 PM Ticket #5951 (Put Qt fatal message output into bug reports) closed by Tom Goddard
fixed: Done. Qt fatal errors will now be written to the faulthandler log …
6:16 PM Ticket #6981 (Show clip caps on atoms and ribbons) created by Tom Goddard
Zheng Ruan asked about showing clip caps on ribbon helix tubes. …
6:12 PM Ticket #6980 (Clip caps on drawings which are not models don't update) closed by Tom Goddard
fixed: Fixed. The non-model clip caps had the wrong clip plane name assigned …
6:09 PM Ticket #6980 (Clip caps on drawings which are not models don't update) created by goddard@…
[…]
4:52 PM Ticket #6979 (ClipCapDrawing missing argument) closed by Tom Goddard
fixed: Fixed. Added drawing argument to constructor call. I guess we never …
4:28 PM Ticket #6979 (ClipCapDrawing missing argument) created by goddard@…
[…]
3:45 PM Ticket #6978 (Blocking not honored for web jobs) created by pett
[…] nonassoc.fa
1:17 PM Ticket #6977 (PDB two-letter chain ID sometimes not recognized if TER missing) created by apadavannil@…
[…]
1:14 PM Ticket #6976 (Minimize mouse mode: Missing atoms or parameterization needed) closed by Tom Goddard
limitation: Unfortunately ChimeraX minimize and tug mouse modes only handle …
11:39 AM Ticket #6976 (Minimize mouse mode: Missing atoms or parameterization needed) created by nxb318@…
[…]
10:01 AM Ticket #6975 (Crash in event loop) closed by pett
can't reproduce: After opening session
9:46 AM Ticket #6975 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:23 AM Ticket #6972 (Graphics crash, macOS 12.4, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
8:56 AM Ticket #6974 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: Hi Fernando, Thanks for reporting this problem. We have never been …
8:52 AM Ticket #6973 ('SaveModelOptionWidget' object has no attribute '_name') closed by pett
duplicate: Hi Mohinder, Thanks for reporting this problem. It has been fixed in …
7:03 AM Ticket #6974 (Crash showing Rapid Access at startup) created by f.bruno@…
[…]
2:35 AM Ticket #6973 ('SaveModelOptionWidget' object has no attribute '_name') created by Mohinder.pal@…
[…]

May 26, 2022:

10:16 PM Ticket #6972 (Graphics crash, macOS 12.4, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
5:30 PM Ticket #6971 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard
can't reproduce: A status line expose event at startup gave an OpenGL error. Have seen …
5:19 PM Ticket #6963 (Crash computing surface) closed by Tom Goddard
can't reproduce: Appears to have crashed computing molecular surfaces for PDB 6uv5. I …
4:39 PM Ticket #6965 (sym: normalize_vector() takes 1 positional argument but 3 were given) closed by Tom Goddard
duplicate: Fixed this a few weeks ago.
4:26 PM Ticket #6970 (chimerax-1.4-rc2022.05.25 generic Linux 64-bit doesn't work) closed by Greg Couch
fixed: Fixed. The OS used to build the generic version of ChimeraX is too old …
4:04 PM Ticket #6969 (Qt6: QFileDialog.FileMode.DirectoryOnly) closed by pett
fixed: Put a fix in the release candidate and the daily build. The "simple" …
3:13 PM Ticket #6971 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by chimerax-bug-report@…
[…]
3:13 PM Ticket #6968 (Session restore: invalid load key) closed by pett
duplicate: Hi Nicholas, Thanks for reporting this problem. The problem is that …
3:06 PM Ticket #6967 (Crash in Qt at app quit) closed by pett
duplicate: Hi Maria, Thanks for reporting this problem. I would recommend …
2:45 PM Ticket #6970 (chimerax-1.4-rc2022.05.25 generic Linux 64-bit doesn't work) created by x6laboratory@…
[…]
2:35 PM Ticket #6969 (Qt6: QFileDialog.FileMode.DirectoryOnly) created by thibault.tubiana@…
[…]
2:03 PM NTTData edited by Elaine Meng
(diff)
2:00 PM Ticket #6966 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
1:53 PM NTTData edited by Elaine Meng
(diff)
1:52 PM NTTData edited by Elaine Meng
(diff)
1:32 PM NTTData edited by Elaine Meng
(diff)
11:46 AM Ticket #6968 (Session restore: invalid load key) created by nicolas.coudray@…
[…]
11:35 AM Ticket #6967 (Crash in Qt at app quit) created by maru.jaimegarza@…
[…]
10:58 AM Ticket #6960 (ISOLDE installation) closed by pett
not a bug: Hi, There is no version of ISOLDE compatible with the 1.4 release …
9:15 AM Ticket #6966 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
7:32 AM Ticket #6965 (sym: normalize_vector() takes 1 positional argument but 3 were given) created by chimerax-bug-report@…
[…]
6:37 AM Ticket #6964 (Fetching version information: certificate verify failed: unable to get ...) created by tjrabbit30@…
[…]
6:09 AM Ticket #6963 (Crash computing surface) created by chimerax-bug-report@…
[…]
12:58 AM Ticket #6955 (Cannot allocate Clipper array) closed by Tristan Croll
can't reproduce: Going to close this for now. Please let me know if it persists after …

May 25, 2022:

9:59 PM Ticket #6959 (AlphaFold prediction energy OpenMM minimization always fails) closed by Tom Goddard
fixed: Fixed. Specified conda cudatoolkit version 11.2 in colab openmm …
7:31 PM Ticket #6962 (Volume histogram: RuntimeWarning: invalid value encountered in log) closed by Tom Goddard
fixed: Fixed. The C++ bin_counts() code was filling an in32 array that was …
6:55 PM Ticket #6951 (Crash masking volume) closed by Tom Goddard
fixed: Fixed in daily build, not in ChimeraX 1.4. After changing the array …
6:51 PM Ticket #6962 (Volume histogram: RuntimeWarning: invalid value encountered in log) created by goddard@…
[…]
6:13 PM Ticket #6961 (AlphaFold prediction: A UTF-8 locale is required. Got ANSI_X3.4-1968) created by Tom Goddard
Restarting an AlphaFold prediction after an OpenMM minimization …
5:55 PM Ticket #6960 (ISOLDE installation) created by murpholinoxpeligro@…
[…]
3:12 PM Ticket #6959 (AlphaFold prediction energy OpenMM minimization always fails) created by Tom Goddard
Tomas Fernandez noted in a YouTube comment of a ChimeraX AlphaFold
2:27 PM Ticket #6958 (Fix AlphaFold prediction using wrong Colab notebook) closed by Tom Goddard
fixed: Fixed in 1.4 and daily build. The current python notebook file name …
1:49 PM Ticket #6958 (Fix AlphaFold prediction using wrong Colab notebook) created by Tom Goddard
On April 4, 2022 when I updated the ChimeraX AlphaFold Colab notebook …
1:20 PM Ticket #6957 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
1:05 PM Ticket #6957 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
11:44 AM Ticket #6956 (Error initializing context: clCreateContext) closed by Tristan Croll
duplicate: As for #6955, looks like you're out of memory (-6 is …
11:30 AM Ticket #6949 (Failed to create NSOpenGLContext) closed by Tom Goddard
can't reproduce: Qt was handling a resize event and then called …
11:26 AM Ticket #6954 (PDB assembly chain IDs) closed by pett
fixed: Hi Yumeng, Thanks for reporting this problem. The issue is that …
11:09 AM Ticket #6953 (Long atom spec crashes ChimeraX) closed by pett
duplicate: Hi Tristan, This is a problem with the grako parser using deep …
10:56 AM Ticket #6956 (Error initializing context: clCreateContext) created by 352884536@…
[…]
10:55 AM Ticket #6955 (Cannot allocate Clipper array) created by 352884536@…
[…]
9:31 AM Ticket #6950 (Crash saving session) closed by pett
can't reproduce: Hi Xiaoli, Thanks for reporting this problem. The primary thing I …
9:28 AM Ticket #6954 (PDB assembly chain IDs) created by yumeng.yan@…
[…]
9:17 AM Ticket #6948 (Unknown crash) closed by pett
can't reproduce: 1.4rc It looks like it was processing a typed command, but other than …
4:15 AM Ticket #6953 (Long atom spec crashes ChimeraX) created by Tristan Croll
[…]
1:29 AM Ticket #6952 (QMainWindowLayout::tabPosition called with out-of-bounds value) created by Tristan Croll
[…]

May 24, 2022:

11:04 PM Ticket #6951 (Crash masking volume) created by gimshan.jayawardena@…
[…]
7:52 PM Ticket #6950 (Crash saving session) created by laituya@…
[…]
7:46 PM Ticket #6949 (Failed to create NSOpenGLContext) created by chimerax-bug-report@…
[…]
4:06 PM Ticket #6948 (Unknown crash) created by chimerax-bug-report@…
[…]
1:00 PM Ticket #6946 (Allow copying volume fit list to clip board) closed by Tom Goddard
fixed: Added copy to clipboard for volume fit list. Tested on Mac using …
12:30 PM Ticket #6947 (Make coordset act immediately if a single frame specified) closed by Tom Goddard
fixed: Done. In the rare case where you want coordset to jump to a single …
12:25 PM Ticket #6947 (Make coordset act immediately if a single frame specified) created by sdramgoolam@…
Using the coordset in a script to jump to a specific coordinate set …
12:12 PM Dev2022-6-2 created by Tom Goddard
12:11 PM 2022-5-26 created by Tom Goddard
12:09 PM DeveloperMeetings edited by Tom Goddard
(diff)
12:05 PM Ticket #6946 (Allow copying volume fit list to clip board) created by johnskalidis@…
Begin forwarded message: From: Ioannis Skalidis via ChimeraX-users …
11:46 AM Ticket #6942 (Crash in Qt event loop while running AlphaFold prediction) closed by Tom Goddard
can't reproduce
11:23 AM Ticket #6945 (Return unminimized structure if AlphaFold minimization fails) created by Tom Goddard
There is an option in the AlphaFold tool to turn off minimization. …
10:51 AM Ticket #6944 (Deleting status bar: wrapped C/C++ object of type QScreen has been deleted) closed by pett
duplicate
10:42 AM Ticket #6943 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
5:53 AM Ticket #6944 (Deleting status bar: wrapped C/C++ object of type QScreen has been deleted) created by chimerax-bug-report@…
[…]
5:07 AM Ticket #6943 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:16 AM Ticket #6942 (Crash in Qt event loop while running AlphaFold prediction) created by chimerax-bug-report@…
[…]

May 23, 2022:

7:25 PM Ticket #6941 (Bad PAE mouse-drag callback) closed by Tom Goddard
fixed: Fixed. Made code ignore drags with modifier keys held down. Code was …
7:08 PM Ticket #6915 (Tried to get the position of deleted drawing "Room camera") closed by Tom Goddard
fixed: Fixed. The second and third tracebacks are the same and were caused …
5:03 PM Ticket #6940 (RFE: make "key" command work with palette-name alone to give blank labels) closed by pett
fixed: In tomorrow's daily build (not release candidate)
3:46 PM Ticket #6939 (Windows ChimeraX does not crash on access violation) closed by Tom Goddard
limitation: I don't think there is anything to be done about ctypes catching …
3:35 PM Ticket #6788 (Remove Windows crash reporting in ChimeraX 1.4) closed by Tom Goddard
fixed: Done. Disabled crash reporting on Windows in ChimeraX 1.4 and develop …
3:28 PM Ticket #6941 (Bad PAE mouse-drag callback) created by Elaine Meng
[…]
3:26 PM Ticket #6940 (RFE: make "key" command work with palette-name alone to give blank labels) created by Elaine Meng
Currently you have to know the number of colors in the palette and …
2:33 PM Ticket #6936 (SpinBox Return keys forwarded to command line) closed by pett
fixed: Okay, fix committed to daily build
12:46 PM Ticket #6939 (Windows ChimeraX does not crash on access violation) created by goddard@…
[…]
12:38 PM Ticket #6938 (Crash in event loop) created by smsherrer@…
[…]
12:15 PM Ticket #6923 (QOpenGLFramebufferObject: Framebuffer incomplete attachment) closed by Tom Goddard
can't reproduce: Appears Qt had trouble with its OpenGL rendering. Could be some mixup …
11:40 AM Ticket #6935 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: Status line expose event produced an OpenGL error after successfully …
11:38 AM Ticket #6933 (Graphics crash, macOS 10.15.7, Radeon Pro 570X) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
11:19 AM Ticket #6934 (Crash using File→Open on Windows) closed by pett
can't reproduce: 1.3
11:13 AM Ticket #6932 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: Hi Bahram, Thanks for reporting this problem. We believe it is fixed …
11:10 AM Ticket #6931 (Problem importing translated Chimera session file?) closed by pett
can't reproduce: Is the traceback truncated? What's with the "close session" command …
10:40 AM Ticket #6929 (Crash in event loop) closed by pett
can't reproduce
10:38 AM Ticket #6928 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:35 AM Ticket #6927 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:30 AM Ticket #6925 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: 1.4rc unfortunately
10:21 AM Ticket #6937 (Save AlphaFold PAE plots in sessions) created by Tom Goddard
Save PAE plot data and coloring in session files.
8:45 AM Ticket #6936 (SpinBox Return keys forwarded to command line) created by Tristan Croll
[…]
2:46 AM Ticket #6935 (glClear: invalid framebuffer operation) created by marek.sebesta@…
[…]
1:24 AM Ticket #6934 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]

May 22, 2022:

11:29 PM Ticket #6933 (Graphics crash, macOS 10.15.7, Radeon Pro 570X) created by chimerax-bug-report@…
[…]
7:49 PM Ticket #6932 (Crash using File→Open on Windows and/or in return statement) created by pobah169@…
[…]
4:52 AM Ticket #6931 (Problem importing translated Chimera session file?) created by chimerax-bug-report@…
[…]

May 21, 2022:

8:12 PM Ticket #6930 (Backwards-compatibility custom-attribute classes lack "include_state" ...) created by chimerax-bug-report@…
[…]
10:05 AM Ticket #6929 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:17 AM Ticket #6928 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
7:36 AM Ticket #6927 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]

May 20, 2022:

9:22 PM Ticket #6926 (Problem fetching mmCIF template: URL can't contain control characters) created by chimerax-bug-report@…
[…]
7:54 PM Ticket #6925 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
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12:10 PM Ticket #6924 (QXcbConnection: XCB error:) created by nxb318@…
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9:01 AM Ticket #6920 (Crash in event loop) closed by pett
can't reproduce
8:56 AM Ticket #6923 (QOpenGLFramebufferObject: Framebuffer incomplete attachment) created by chimerax-bug-report@…
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12:32 AM Ticket #6922 (Update core setup.py to pyproject.toml) created by Zach Pearson
Will start this effort in an isolated branch with no other changes and …
12:00 AM Ticket #6921 (RFE: Flatten the namespace package in the source code, somehow) created by Zach Pearson
For much the same reasons as #6917, where I said "Having different …
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