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Sep 5, 2025:

3:54 PM Ticket #18724 (Segmentation cursor is None) created by chimerax-bug-report@…: […]
12:53 PM Ticket #18723 (glClear: invalid framebuffer operation) closed by Tom Goddard: can't reproduce: This error is probably a bug in either the Qt window toolkit or …
12:36 PM Ticket #18721 (Cannot open NASA .glb files: KeyError: 'bufferView') closed by Tom Goddard: wontfix: The ChimeraX GLTF reader does not handle every aspect of the GLTF …
11:32 AM Ticket #18722 (Session restore: KeyError: "combine") closed by pett: duplicate: Duplicate of #17081; they all seem to involve volumes not being restored
11:27 AM Ticket #18720 (Crash opening file) closed by pett: can't reproduce: Probable drag-and-drop
11:09 AM Ticket #18723 (glClear: invalid framebuffer operation) created by Imarquez8943@…: […]
10:23 AM Ticket #18718 (Crash okaying dialog) closed by pett: can't reproduce: Possibly okaying open dialog for session.
10:07 AM Ticket #18716 (Crash using open/save dialog) closed by pett: can't reproduce
9:59 AM Ticket #18715 (Crash in event loop) closed by pett: limitation: Remote display
9:57 AM Ticket #18714 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett: duplicate
9:53 AM Ticket #18713 (PySide crash while showing Modeller Comparative tool) closed by pett: duplicate: Duplicate of #18707
9:46 AM Ticket #18711 (Crash closing tool with in-window status bar with PySide) closed by pett: duplicate: Duplicate of #18630
8:40 AM Ticket #18722 (Session restore: KeyError: "combine") created by chimerax-bug-report@…: […]
8:08 AM Ticket #18721 (Cannot open NASA .glb files: KeyError: 'bufferView') created by weberm@…: […] Mars 2020 Perseverance Rover.glb
7:18 AM Ticket #18720 (Crash opening file) created by chimerax-bug-report@…: […]
5:18 AM Ticket #18719 (Bad Swissdock file) created by vaishnvi.chikhale@…: […]
4:10 AM Ticket #18718 (Crash okaying dialog) created by chimerax-bug-report@…: […]
3:49 AM Ticket #18717 (Crash rendering Qt widget) created by g.s.stewart@…: […]
1:36 AM Ticket #18716 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
12:31 AM Ticket #18715 (Crash in event loop) created by chimerax-bug-report@…: […]

Sep 4, 2025:

11:30 PM Ticket #18714 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
10:38 PM Ticket #18713 (PySide crash while showing Modeller Comparative tool) created by chimerax-bug-report@…: […]
6:40 PM Ticket #18712 ('BlobOutlineBox' object has no attribute 'data') created by chimerax-bug-report@…: […]
6:28 PM Ticket #18711 (Crash closing tool with in-window status bar with PySide) created by chimerax-bug-report@…: […]
3:56 PM Ticket #18710 (Save NifTi: 'NoneType' object is not subscriptable) created by gregdp@…: […]
3:16 PM Ticket #18706 (Crash closing tool with in-window status bar with PySide) closed by pett: duplicate: Duplicate of #18630
2:51 PM Ticket #18705 (Multiple consecutive Find Cavities: dead models) closed by pett: can't reproduce: Unlike #18600, not after an initial failed install.
2:36 PM Ticket #18704 (Crash using open/save dialog) closed by pett: can't reproduce
2:34 PM Ticket #18703 (Crash in garbage collection) closed by pett: duplicate
2:23 PM Ticket #18700 (Not a ChimeraX session file) closed by Greg Couch: fixed: Not sure why this case was a RuntimeError instead of a UserError. So …
2:12 PM Ticket #18701 (pae is not a file in the archive) closed by Tom Goddard: fixed: The user tried to open a predicted distance error .npz file from Boltz …
2:04 PM Ticket #18709 (ffmpeg: Permission Denied) created by akennard@…: […]
1:46 PM Ticket #18699 (Tried to charge HIS) closed by pett: can't reproduce
1:42 PM Ticket #18698 (Crash in event loop) closed by pett: can't reproduce
12:00 PM Training edited by Tom Goddard: (diff)
8:40 AM Ticket #18708 (Cannot resize UV/Vis plot) created by aligula.jeff@…: […]
7:39 AM Ticket #18707 (PySide crash while showing Modeller Comparative tool) created by chimerax-bug-report@…: […]
7:35 AM Ticket #18706 (Crash closing tool with in-window status bar with PySide) created by chimerax-bug-report@…: […]
4:13 AM Ticket #18705 (Multiple consecutive Find Cavities: dead models) created by chimerax-bug-report@…: […]
2:11 AM Ticket #18704 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
1:49 AM Ticket #18703 (Crash in garbage collection) created by chimerax-bug-report@…: […]

Sep 3, 2025:

11:48 PM Ticket #18702 (alignment widget not properly destroying when tool closed) created by 2231014@…: […]
9:18 PM Ticket #18701 (pae is not a file in the archive) created by chimerax-bug-report@…: […]
6:18 PM Ticket #18700 (Not a ChimeraX session file) created by chimerax-bug-report@…: […]
2:10 PM Ticket #18699 (Tried to charge HIS) created by chimerax-bug-report@…: […]
11:05 AM Ticket #18698 (Crash in event loop) created by chimerax-bug-report@…: […]
8:44 AM Ticket #18697 (Unknown crash) closed by pett: can't reproduce
8:42 AM Ticket #18696 (Crash on Mac waking from sleep) closed by pett: duplicate
8:41 AM Ticket #18695 (Crash in event loop) closed by pett: can't reproduce
8:36 AM Ticket #18694 (Crash opening PDB file) closed by pett: can't reproduce
8:35 AM Ticket #18693 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett: duplicate: Duplicate of #18238
6:01 AM Ticket #18697 (Unknown crash) created by chimerax-bug-report@…: […]
5:09 AM Ticket #18696 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:15 AM Ticket #18695 (Crash in event loop) created by chimerax-bug-report@…: […]
1:25 AM Ticket #18694 (Crash opening PDB file) created by chimerax-bug-report@…: […]

Sep 2, 2025:

9:41 PM Ticket #18693 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…: […]
3:00 PM Ticket #18669 (Excess mmCIF bonds) closed by Greg Couch: nonchimerax: So that's a bug in the data, not the connectivity. Chain a and chain …
2:40 PM Ticket #18692 (Sequence viewer 'PySide6.QtWebEngineCore.QWebEngineUrlRequestInfo' ...) created by goddard@…: […]
11:37 AM Ticket #18688 (AlphaFold JSON read as MOLE) closed by Tom Goddard: not a bug: To read AlphaFold 3 predicted aligned error .json files you need a …
11:29 AM Ticket #18683 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX crash report panel said what we know about this crash …
11:28 AM Ticket #18686 (Crash moving window between screens) closed by pett: duplicate
11:28 AM Ticket #18682 (Graphics error) closed by Tom Goddard: nonchimerax: Intel graphics driver crash on Windows.
11:27 AM Ticket #18685 (ArtiaX: 'RELION5SaveArgsWidget' object has no attribute 'model_combo') closed by pett: duplicate
11:20 AM Ticket #18681 (Crash in event loop) closed by pett: can't reproduce
10:54 AM Ticket #18680 (Crash in event loop) closed by pett: can't reproduce
10:51 AM Ticket #18679 (Crash in event loop) closed by pett: can't reproduce
10:47 AM Dev2025-9-8 created by Tom Goddard
10:45 AM DeveloperMeetings edited by Tom Goddard: (diff)
10:35 AM Ticket #18678 (inadequate OpenGL) closed by pett: limitation
10:33 AM Ticket #18677 (Find Cavities on ARM Linux) closed by pett: limitation: Hi Bill, The Find Cavities tool carries out its search using the …
10:30 AM Ticket #18674 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX crash report panel says what we know about this crash …
10:28 AM Ticket #18672 (Crash in glBufferSubData) closed by Tom Goddard: nonchimerax: Adjusting threshold level of a 4 GB map (1000^{3 float32) graphics …}
10:24 AM Ticket #18676 (Crash opening PDB file) closed by pett: can't reproduce
10:16 AM Ticket #18671 (ffmpeg: Permission denied) closed by pett: duplicate
10:15 AM Ticket #18670 ('pip install pyKVFinder' fails with empty error message) closed by pett: duplicate: Duplicate of #17229 Waiting for someone to report it from the daily …
10:08 AM Ticket #18691 (Preset file contains non-Unicode character) created by chimerax-bug-report@…: […]
9:23 AM Ticket #18667 ('MRCGrid' object has no attribute 'dicom_data') closed by pett: duplicate
7:57 AM Ticket #18690 (SEQCROW "raw output" job queue: expected str, bytes or os.PathLike ...) created by mziemniak@…: […] chimera-bug.png
6:54 AM Ticket #18689 (Volume 'session' attribute is None, Segmentations tool) created by chimerax-bug-report@…: […]
6:23 AM Ticket #18688 (AlphaFold JSON read as MOLE) created by shonna.mcbride@…: […]
4:15 AM Ticket #18687 (Crash on Wayland querying mouse position) created by chimerax-bug-report@…: […]
3:57 AM Ticket #18686 (Crash moving window between screens) created by chimerax-bug-report@…: […]
2:36 AM Ticket #18685 (ArtiaX: 'RELION5SaveArgsWidget' object has no attribute 'model_combo') created by chimerax-bug-report@…: […]
2:31 AM Ticket #18684 (ArtiaX: 'RELION5SaveArgsWidget' object has no attribute 'model_combo') created by chimerax-bug-report@…: […]
1:42 AM Ticket #18683 (Crash on Mac waking from sleep) created by anushka.ghosh@…: […]
1:13 AM Ticket #18682 (Graphics error) created by chimerax-bug-report@…: […]

Sep 1, 2025:

11:37 PM Ticket #18681 (Crash in event loop) created by chimerax-bug-report@…: […]
5:19 PM Ticket #18680 (Crash in event loop) created by chimerax-bug-report@…: […]
4:17 PM Ticket #18679 (Crash in event loop) created by chimerax-bug-report@…: […]
11:23 AM Ticket #18678 (inadequate OpenGL) created by chimerax-bug-report@…: […]
9:46 AM Ticket #18677 (Find Cavities on ARM Linux) created by greenpearz@…: […]
3:53 AM Ticket #18676 (Crash opening PDB file) created by chimerax-bug-report@…: […]

Aug 31, 2025:

9:37 PM Ticket #18675 (Qt fatal error: GLOzone not found for unknown) created by shareefshaik187@…: […]
7:43 PM Ticket #18674 (Crash on Mac waking from sleep) created by nuren.tasneem@…: […]
3:25 PM Ticket #18673 (UnicodeDecodeError reading ORCA output) created by chimerax-bug-report@…: […]
2:55 PM Ticket #18672 (Crash in glBufferSubData) created by chimerax-bug-report@…: […]
1:02 AM Ticket #18671 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]

Aug 30, 2025:

9:12 AM Ticket #18670 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…: […]
3:34 AM Ticket #18669 (Excess mmCIF bonds) created by Tristan Croll: […] bad_connectivity.jpg

Aug 29, 2025:

10:03 PM Ticket #18668 ('NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…: […]
9:49 PM Ticket #18667 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
9:46 AM Ticket #18666 (Bad CSV file name) closed by pett: can't reproduce: Seems unlikely that C:\path\ is correct. If this happens more often I …
9:30 AM Ticket #18666 (Bad CSV file name) created by chimerax-bug-report@…: […]
9:21 AM Ticket #18659 (Session restore: LZ4F_decompress failed) closed by Greg Couch: fixed: Needs lz4 4.3.2 :-(, which is ChimeraX 1.10.
9:18 AM Ticket #18665 (ffmpeg: Permission denied) closed by pett: duplicate
9:15 AM Ticket #18664 (AlphaFold JSON read as MOLE) closed by pett: duplicate
9:12 AM Ticket #18663 (Crash moving window between screens) closed by pett: duplicate
9:10 AM Ticket #18662 (Kernel memory error) closed by pett: can't reproduce
9:06 AM Ticket #18661 (Crash after deep recursion) closed by pett: can't reproduce
9:04 AM Ticket #18660 (Varios math errors) closed by pett: can't reproduce: Probably very problematic structure
8:57 AM Ticket #18656 (Crash on exit) closed by pett: duplicate: From before the crash-on-exit fix went in.
8:51 AM Ticket #18665 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]
5:13 AM Ticket #18664 (AlphaFold JSON read as MOLE) created by chimerax-bug-report@…: […]
5:03 AM Ticket #18663 (Crash moving window between screens) created by chimerax-bug-report@…: […]
3:17 AM Ticket #18662 (Kernel memory error) created by chimerax-bug-report@…: […]

Aug 28, 2025:

3:51 PM Ticket #18463 (Sequence identity selection broken) closed by pett: fixed: Fix: …
3:09 PM Ticket #18644 (Combining sessions error if global pseudobond groups in both) closed by pett: fixed: The global pseudobond manager needs to *not* clear existing groups if …
2:56 PM Ticket #18655 (Crash in glBufferSubData) closed by Tom Goddard: can't reproduce: Mac M2 Mac graphics driver crashed adjusting volume threshold on a 600 …
1:39 PM 2025-8-28 edited by Tom Goddard: (diff)
12:34 PM Ticket #18661 (Crash after deep recursion) created by chimerax-bug-report@…: […]
12:24 PM Ticket #18660 (Varios math errors) created by chimerax-bug-report@…: […]
11:07 AM Ticket #18659 (Session restore: LZ4F_decompress failed) created by chimerax-bug-report@…: […]
10:57 AM Ticket #18654 (Can't install ISOLDE) closed by pett: worksforme
10:53 AM Ticket #18658 (PySide: closing Renumber Residues) created by pett: Closing the Renumber Residues tool (either with the close button in …
10:53 AM Ticket #18657 (Tabs don't show for stacked docked tools in PySide 6.9.2) created by goddard@…: […]
10:37 AM Ticket #18652 (Crash in chain_trace_atoms) closed by pett: can't reproduce
10:33 AM Ticket #18651 (Crash moving window between screens) closed by pett: duplicate
10:32 AM Ticket #18650 (Crash opening second copy of structure) closed by pett: can't reproduce: Why are there no "open" commands in the log?
10:16 AM Ticket #18648 (ffmpeg: Permission denied) closed by pett: duplicate
10:14 AM Ticket #18647 (Basic Actions: 'QEventLoop' object has no attribute 'exec_') closed by pett: duplicate
7:07 AM Ticket #18656 (Crash on exit) created by chimerax-bug-report@…: […]
7:03 AM Ticket #18655 (Crash in glBufferSubData) created by chimerax-bug-report@…: […]
6:57 AM Ticket #18654 (Can't install ISOLDE) created by chimerax-bug-report@…: […]
6:00 AM Ticket #18653 (PySide: crash destroying tool) created by chimerax-bug-report@…: […]
3:05 AM Ticket #18652 (Crash in chain_trace_atoms) created by chimerax-bug-report@…: […]
2:35 AM Ticket #18651 (Crash moving window between screens) created by chimerax-bug-report@…: […]
2:30 AM Ticket #18650 (Crash opening second copy of structure) created by chimerax-bug-report@…: […]
2:21 AM Ticket #18649 (PICKLUSTER: 'Volume' object has no attribute 'chains') created by chimerax-bug-report@…: […]
1:22 AM Ticket #18648 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]
12:51 AM Ticket #18647 (Basic Actions: 'QEventLoop' object has no attribute 'exec_') created by chimerax-bug-report@…: […]

Aug 27, 2025:

4:57 PM Ticket #18646 (log hyperlink: 'PySide6.QtCore.QUrl.toString' called with wrong ...) created by pett: […]
3:05 PM Ticket #18645 (Boltz PermissionError: [Errno 1] Operation not permitted if results ...) closed by Tom Goddard: fixed: Fixed. Made results directory path absolute if it is given as a …
2:53 PM Ticket #18645 (Boltz PermissionError: [Errno 1] Operation not permitted if results ...) created by goddard@…: […]
2:02 PM Ticket #18644 (Combining sessions error if global pseudobond groups in both) created by chimerax-bug-report@…: […]
11:49 AM Ticket #18643 (Isolde sim start: OpenMMException: Error initializing context) created by chimerax-bug-report@…: […]
11:47 AM Ticket #18642 (ArrayMemoryError saving image) closed by Tom Goddard: limitation: User tried to save a 1 GB image and got an out of memory error, …
10:49 AM Ticket #18634 (glDrawBuffer: invalid operation) closed by Tom Goddard: can't reproduce: Possibly remote display dropped connection.
10:44 AM Ticket #18641 (surface enclose: 'Atoms' object has no attribute 'spec') closed by pett: fixed: Hi Mukundan, Thanks for reporting this problem. It is fixed now and …
10:22 AM Ticket #18639 (ChimeraX not starting on Windows Server 2016) closed by Greg Couch: limitation: From that error, it appears that the Qt user interface toolkit, that …
9:57 AM Ticket #18642 (ArrayMemoryError saving image) created by chimerax-bug-report@…: […]
9:54 AM Ticket #18640 (ffmpeg: Permission denied) closed by pett: duplicate
9:52 AM Ticket #18638 (No space left on device saving command history) closed by pett: nonchimerax
9:50 AM Ticket #18637 (Crash at exit) closed by pett: can't reproduce
8:06 AM Ticket #18641 (surface enclose: 'Atoms' object has no attribute 'spec') created by mukundan.ragavan@…: […]
6:15 AM Ticket #18640 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]
6:14 AM Ticket #18639 (ChimeraX not starting on Windows Server 2016) created by juergen.eirich@…: […] smime.p7s
4:22 AM Ticket #18638 (No space left on device saving command history) created by chimerax-bug-report@…: […]
1:20 AM Ticket #18637 (Crash at exit) created by chimerax-bug-report@…: […]

Aug 26, 2025:

7:59 PM Ticket #18636 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by chimerax-bug-report@…: […]
7:05 PM Ticket #18635 (Crash creating HtmlView profile) created by chimerax-bug-report@…: […]
6:37 PM Ticket #18634 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…: […]
5:45 PM Ticket #18633 (Atomic collections not restoring in sessions) closed by pett: duplicate: Duplicate of #18631
5:44 PM Ticket #18632 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett: duplicate: Duplicate of #18238
5:42 PM Ticket #18631 (Atomic collections not restoring in sessions) closed by pett: fixed: I got overzealous with moving scene support from Collections the other …
5:20 PM Ticket #18629 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett: duplicate
5:10 PM Ticket #18633 (Atomic collections not restoring in sessions) created by chimerax-bug-report@…: […]
5:05 PM Ticket #18632 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…: […]
4:48 PM Ticket #18631 (Atomic collections not restoring in sessions) created by chimerax-bug-report@…: […]
3:59 PM Ticket #2024 (Doc strings / optional arguments for aliases) closed by Greg Couch: fixed: Ah ha. Yes, help was being too helpful for aliases. That is fixed. …
10:53 AM Ticket #18630 (Crash closing tool with in-window status bar with PySide 6.9.2) created by goddard@…: […]
10:41 AM Ticket #18629 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
10:41 AM Ticket #18610 (PySide6: a couple of errors) closed by pett: fixed: Yes, a popup QMenu needs an explicit parent. This is done in most …
10:37 AM 2025-8-28 created by Tom Goddard
10:36 AM DeveloperMeetings edited by Tom Goddard: (diff)
10:18 AM Ticket #18623 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX bug report panel says what we know about this crash: …
9:56 AM Ticket #18628 (ffmpeg: Permission denied) closed by pett: duplicate: Hi Ryan, This was a problem in 1.10, so if you de-installed that and …
9:54 AM Ticket #18627 (Crash using open/save dialog) closed by pett: can't reproduce
9:50 AM Ticket #18625 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett: duplicate: Duplicate of #18238
9:43 AM Ticket #18624 (MemoryError opening mmCIF files) closed by pett: duplicate
9:40 AM Ticket #18621 (Window close: tool_instance is None) closed by pett: can't reproduce
9:33 AM Ticket #18620 (Crash at/near startup) closed by pett: can't reproduce
4:41 AM Ticket #18628 (ffmpeg: Permission denied) created by abdel104@…: […] Screenshot 2025-08-26 at 6.41.19 AM.png
3:24 AM Ticket #18627 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
1:41 AM Ticket #18626 (ArtiaX: slider: max == min) created by chimerax-bug-report@…: […]

Aug 25, 2025:

10:23 PM Ticket #18473 ("alias usage" interfering with the actual alias) closed by Greg Couch: fixed: Fixed in [develop 233e6b940].
9:43 PM Ticket #18625 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…: […]
8:24 PM Ticket #18624 (MemoryError opening mmCIF files) created by chimerax-bug-report@…: […]
7:24 PM DeveloperMeetings edited by Tom Goddard: (diff)
7:23 PM Dev2025-8-25 edited by Tom Goddard: (diff)
7:08 PM Ticket #18623 (Crash on Mac waking from sleep) created by mrafiq@…: […]
4:58 PM Ticket #18622 (Crash on exit if a floating tool window is shown, Mac Qt 6.9) created by goddard@…: […]
4:23 PM Dev2025-8-25 edited by Tom Goddard: (diff)
3:44 PM Ticket #18619 (PY_SSIZE_T_CLEAN macro error in _mac_util.set_file_icon) closed by Zach Pearson: fixed: This was fixed by the 1.7 release. Use a newer build.
3:42 PM Ticket #18618 (ui view fourup: division by zero) closed by Zach Pearson: duplicate: Should be fixed in any recent build.
3:37 PM Ticket #18350 (PySide6 crash at exit) closed by Zach Pearson: can't reproduce: Works on my machine
3:37 PM Ticket #18352 (PySide6 crash closing tool) closed by Zach Pearson: can't reproduce: Which tool
3:32 PM Ticket #18474 (Closing floating side view window crashes PySide ChimeraX) closed by Zach Pearson: fixed: I was able to reproduce this on PyQt6 actually. It appears that on …
3:05 PM Dev2025-8-25 edited by Tom Goddard: (diff)
3:04 PM Dev2025-8-25 edited by Tom Goddard: (diff)
3:00 PM Ticket #18621 (Window close: tool_instance is None) created by chimerax-bug-report@…: […]
2:24 PM Ticket #18617 (ChimeraX installer incompatibile with Windows 11 ARM64.) closed by Zach Pearson: fixed: Thanks! I fetched chimerax.iss.in from Plato and diff'd it with the …
12:19 PM Ticket #18614 (Session restore/reset: 'ClipCap' object has no attribute 'was_deleted') closed by Tom Goddard: duplicate: Restoring session where a clipped volume was missing and was not …
12:08 PM Ticket #18611 (Boltz tool: wrapped C/C++ object of type QFrame has been deleted) closed by Tom Goddard: fixed: Fixed. This error while installing Boltz is harmless. It installed …
11:55 AM Ticket #18620 (Crash at/near startup) created by chimerax-bug-report@…: […]
11:32 AM Ticket #18619 (PY_SSIZE_T_CLEAN macro error in _mac_util.set_file_icon) created by chimerax-bug-report@…: […]
10:12 AM Ticket #18618 (ui view fourup: division by zero) created by chimerax-bug-report@…: […]
9:52 AM Ticket #18616 (Symbol not found: scipy/linalg/_fblas.cpython-311-darwin.so) closed by pett: duplicate
9:43 AM Ticket #18613 (Crash on Mac waking from sleep) closed by pett: duplicate
9:42 AM Ticket #18612 (Crash in garbage collection) closed by pett: duplicate
9:33 AM Ticket #18609 (ffmpeg: Permission denied) closed by pett: duplicate
8:06 AM Ticket #18617 (ChimeraX installer incompatibile with Windows 11 ARM64.) created by MARCINWOJCIECH.BALCERZYK@…: […] [[Image(...)]] [[Image(...)]] …
4:06 AM Ticket #18616 (Symbol not found: scipy/linalg/_fblas.cpython-311-darwin.so) created by chimerax-bug-report@…: […]
3:52 AM Ticket #18615 (Problem opening Gaussian 16 output file) created by mhvg1994@…: […] tma.h2s-2-freq-b3lyp-d3-qzvppd.log
2:43 AM Ticket #18614 (Session restore/reset: 'ClipCap' object has no attribute 'was_deleted') created by chimerax-bug-report@…: […]
1:28 AM Ticket #18613 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Aug 24, 2025:

11:53 PM Ticket #18612 (Crash in garbage collection) created by chimerax-bug-report@…: […]
2:15 PM Ticket #18611 (Boltz tool: wrapped C/C++ object of type QFrame has been deleted) created by Mahmoud.ragab@…: […]
11:35 AM Ticket #18610 (PySide6: a couple of errors) created by chimerax-bug-report@…: […]

Aug 23, 2025:

3:24 PM Ticket #18609 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]

Aug 22, 2025:

2:28 PM Ticket #18598 (Unable to fetch structure) closed by pett: fixed: Great! Glad it's working for you now. --Eric
2:14 PM Ticket #18599 (ViewDock: hbonds not working) closed by pett: fixed: Hi Andrii: thanks for catching this! It will be fixed in the next …
1:48 PM Ticket #18603 (Crash on Mac waking from sleep) closed by pett: duplicate
1:47 PM Ticket #18602 (MemoryError opening mmCIF files) closed by pett: duplicate
1:41 PM Ticket #18600 (Multiple consecutive Find Cavities: dead models) closed by pett: can't reproduce: Was after an initial "failed" install.
1:39 PM Ticket #18597 (Device loss detected in Present() and crash while running Boltz) closed by Tom Goddard: can't reproduce: Claims online suggest "Device loss detected in Present()" means the …
1:24 PM Ticket #18596 (Crash clearing Model Panel's QTreeWidget) closed by pett: can't reproduce
12:49 PM Ticket #18603 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
12:49 PM Ticket #18602 (MemoryError opening mmCIF files) created by chimerax-bug-report@…: […]
12:49 PM Ticket #18601 (Chimera Not Using Graphics Card) created by andhale@…: […]
12:49 PM Ticket #18600 (Multiple consecutive Find Cavities: dead models) created by chimerax-bug-report@…: […]
12:49 PM Ticket #18599 (ViewDock: hbonds not working) created by iamkaant@…: […]
12:49 PM Ticket #18598 (Unable to fetch structure) created by mpatterson@…: […]
12:49 PM Ticket #18597 (Device loss detected in Present() and crash while running Boltz) created by chimerax-bug-report@…: […]
12:49 PM Ticket #18596 (Crash clearing Model Panel's QTreeWidget) created by chimerax-bug-report@…: […]

Aug 21, 2025:

3:05 PM Ticket #18430 (Parsing mmCIF ma_qa_metric_local residue scores complains about ...) closed by pett: fixed: Fix: …
2:24 PM 2025-8-21 edited by Tom Goddard: (diff)
2:13 PM Ticket #18494 (Crash in Qt event loop after alphafold prediction) closed by Tom Goddard: can't reproduce: The crash report only says that it crashed in the Qt event loop. …
1:36 PM 2025-8-21 edited by Elaine Meng: (diff)
1:22 PM Ticket #18495 (traceback selecting residues by clicking in Profile Grid) closed by pett: fixed: Fix: …
1:04 PM Ticket #18493 (Deleting atoms: OSError: access violation) closed by pett: can't reproduce
12:38 PM Ticket #18495 (traceback selecting residues by clicking in Profile Grid) created by Elaine Meng: […]
10:36 AM Ticket #18489 (ffmpeg: Permission denied) closed by pett: duplicate: Hi James, Thanks for reporting this problem. It is fixed in the …
6:57 AM Ticket #18494 (Crash in Qt event loop after alphafold prediction) created by akshitavinod00@…: […]
3:08 AM Ticket #18493 (Deleting atoms: OSError: access violation) created by chimerax-bug-report@…: […]

Aug 20, 2025:

8:47 PM Ticket #18492 (Bad XYZ file) created by chimerax-bug-report@…: […]
8:34 PM Ticket #18491 (Crash using open/save dialog) created by tony.schaefer.chem@…: […]
3:27 PM Ticket #18490 (Boltz: no supported GPU) created by xiangwang@…: […]
2:12 PM ChangeLog edited by Tom Goddard: (diff)
1:07 PM Ticket #18489 (ffmpeg: Permission denied) created by jmberger@…: […]
12:46 PM Ticket #18488 (AlphaFold prediction fails with a TensorFlow error) closed by Tom Goddard: fixed: Fixed. Apparently Google Colab updated TensorFlow which caused this …
12:44 PM Ticket #18488 (AlphaFold prediction fails with a TensorFlow error) created by Tom Goddard: Colabfold Colab tensorflow error Please cite ColabFold: Making …
12:21 PM Ticket #18487 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX bug report panel explained what we know about this crash: …
12:18 PM Ticket #18484 (No selection outline) closed by Tom Goddard: fixed: Unfortunately that is a bug in your Mac AMD graphics driver. Apple is …
12:09 PM Ticket #18483 (glTexImage2D: out of memory) closed by Tom Goddard: can't reproduce: The usual expose event on status line at startup on Windows causes …
8:57 AM Ticket #18486 (Crash after loading trajectory frames) closed by pett: can't reproduce
8:50 AM Ticket #18482 (ffmpeg: Permission denied) closed by pett: duplicate
8:48 AM Ticket #18481 (Crash on Mac waking from sleep) closed by pett: duplicate
6:14 AM Ticket #18487 (Crash on Mac waking from sleep) created by george.nyasha.chiduza@…: […]
3:16 AM Ticket #18486 (Crash after loading trajectory frames) created by chimerax-bug-report@…: […]
2:49 AM Ticket #18485 (Recent Ubuntu update spams log) created by Tristan Croll: […]

Aug 19, 2025:

3:36 PM Ticket #18484 (No selection outline) created by armack@…: […]
1:00 PM Ticket #18390 (viewdock state (columns?) not saved in session) closed by pett: fixed: Fix: …
12:49 PM Ticket #18483 (glTexImage2D: out of memory) created by chimerax-bug-report@…: […]
12:15 PM Ticket #18482 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]
11:31 AM Ticket #18477 (Boltz: PytorchStreamReader failed reading zip archive: failed finding ...) closed by Tom Goddard: fixed: Fixed error where session is closed and Boltz panel tries to report …
11:02 AM Dev2025-8-25 created by Tom Goddard
11:01 AM 2025-8-21 created by Tom Goddard
10:59 AM DeveloperMeetings edited by Tom Goddard: (diff)
10:49 AM Ticket #18481 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
9:56 AM Ticket #18480 ('pip install pyKVFinder' fails with empty error message) closed by pett: not a bug: Thanks for letting me know! --Eric
9:19 AM Ticket #18479 (Crash on Mac waking from sleep) closed by pett: duplicate
9:17 AM Ticket #18478 (ffmpeg: Permission denied) closed by pett: duplicate
9:13 AM Ticket #18476 (Crash on Mac waking from sleep) closed by pett: duplicate
8:04 AM Ticket #18480 ('pip install pyKVFinder' fails with empty error message) created by yxw2042@…: […]
6:05 AM Ticket #18479 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
4:11 AM Ticket #18478 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]
2:27 AM Ticket #18477 (Boltz: PytorchStreamReader failed reading zip archive: failed finding ...) created by george.nyasha.chiduza@…: […]

Aug 18, 2025:

11:18 PM Ticket #18476 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:37 PM Ticket #18475 (Crash on close after closing floating interfaces panel with PySide) created by goddard@…: […]
6:24 PM Ticket #18474 (Closing floating side view window crashes PySide ChimeraX) created by goddard@…: […]
5:03 PM Ticket #18473 ("alias usage" interfering with the actual alias) created by olibclarke@…: […] Hi, I'm testing out the "usage" command for aliases, and I've …
4:12 PM Dev2025-8-18 edited by Tom Goddard: (diff)
4:10 PM Dev2025-8-18 edited by Tom Goddard: (diff)
3:12 PM Dev2025-8-18 edited by Tom Goddard: (diff)
2:20 PM Ticket #18437 (Crash in python_instances_of_class after "build join" command) closed by pett: duplicate: This problem is indeed fixed in current versions of ChimeraX.
2:16 PM Ticket #18444 ("PDB" file contains non-ASCII character or control character) closed by pett: not a bug: The user renamed a PyMOL session file to a ".pdb" suffix and tried to …
2:13 PM Ticket #18447 (Error restoring session: self.bond_rotaters.values(): ...) closed by pett: duplicate: Duplicate of #18447
2:04 PM C++Features edited by pett: (diff)
2:04 PM C++Features edited by pett: (diff)
2:02 PM C++Features edited by pett: (diff)
1:55 PM Ticket #18472 (Boltz: The GPU device instance has been suspended) closed by Tom Goddard: nonchimerax: The ChimeraX log shows the error from Windows "The GPU device instance …
1:44 PM Dev2025-8-18 created by Tom Goddard
1:10 PM Ticket #18472 (Boltz: The GPU device instance has been suspended) created by biq2001@…: […]
12:14 PM Ticket #18470 (cartoon style modeStrand plank: 'StrandPlank' object has no attribute ...) closed by Tom Goddard: not a bug: The modeStrand option of the cartoon style command was never fully …
11:55 AM Ticket #18471 (Mac Accessibility Hover Text: "Cell requested for row 0 is out of ...) closed by Tom Goddard: nonchimerax
11:48 AM Ticket #18471 (Mac Accessibility Hover Text: "Cell requested for row 0 is out of ...) created by goddard@…: […]
11:43 AM Ticket #18470 (cartoon style modeStrand plank: 'StrandPlank' object has no attribute ...) created by hsc43@…: […]
11:29 AM Ticket #18460 (BoltzMSA/index: No such file or directory) closed by Tom Goddard: fixed
11:14 AM Ticket #18456 (Could not make opengl context current) closed by Tom Goddard: nonchimerax: The ChimeraX Log panel explained why ChimeraX could not show …
11:12 AM Ticket #18454 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX bug report panel said what we know about this crash: …
11:11 AM Ticket #18469 (KVFinder on old MacOS) closed by pett: limitation: Hi Biao, Unfortunately, the underlying pyKVFinder program that …
11:07 AM Ticket #18467 (~AppData\Local: Permission denied) closed by pett: can't reproduce
11:00 AM Ticket #18465 ('pip install pyKVFinder' fails with empty error message) closed by pett: duplicate: Duplicate of #17229
10:59 AM Ticket #18156 ('pip install pyKVFinder' fails with empty error message) closed by pett: duplicate: Duplicate of #17229
10:55 AM Ticket #18464 (Regular PDB file opened in MD Viewer) closed by pett: duplicate
10:40 AM Ticket #18462 (Segmentations: chimerax misspelled in import statement) closed by pett: duplicate: Duplicate of #18313
10:37 AM Ticket #18461 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett: duplicate: Duplicate of #18238
10:34 AM Ticket #18459 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett: duplicate: Duplicate of #18238
10:31 AM Ticket #18458 (Proofpoint Essentials - Quarantine Digest) closed by pett: not a bug
10:28 AM Ticket #18455 (Crash on Mac waking from sleep) closed by pett: duplicate
10:14 AM Ticket #18469 (KVFinder on old MacOS) created by biq2001@…: […]
9:53 AM Ticket #18468 (Crash in garbage collection) created by chhandosee@…: […]
8:42 AM Ticket #18467 (~AppData\Local: Permission denied) created by chimerax-bug-report@…: […]
5:30 AM Ticket #18466 (XMAS: error parsing results from pLink) created by emilio.cirri@…: […]
4:15 AM Ticket #18465 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…: […]
2:59 AM Ticket #18464 (Regular PDB file opened in MD Viewer) created by chimerax-bug-report@…: […]
2:57 AM Ticket #18463 (Sequence identity selection broken) created by Tristan Croll: […]

Aug 17, 2025:

9:43 PM Ticket #18462 (Segmentations: chimerax misspelled in import statement) created by chimerax-bug-report@…: […]
7:21 PM Ticket #18461 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…: […]
6:35 PM Ticket #18460 (BoltzMSA/index: No such file or directory) created by jacjagoabc@…: […]
6:31 PM Ticket #18459 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…: […]
5:01 AM Ticket #18458 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…: […]
12:33 AM Ticket #2024 (Doc strings / optional arguments for aliases) reopened by Greg Couch: That's reasonable. I'm partial to "usage aliases".

Aug 16, 2025:

7:56 PM Ticket #18457 (Crash showing/using Side View) created by chimerax-bug-report@…: […]
8:21 AM Ticket #18456 (Could not make opengl context current) created by yaman.gokcek@…: […]
6:05 AM Ticket #18455 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Aug 15, 2025:

10:56 PM Ticket #18454 (Crash on Mac waking from sleep) created by bck243@…: […]
2:02 PM Ticket #17662 (Segmentations: 'chimerax' misspelled) closed by Zach Pearson: fixed: Fixed in daily builds.
2:02 PM Ticket #18441 (Segmentations: ModuleNotFoundError: No module named 'chmerax') closed by Zach Pearson: duplicate: Use a daily build. This will be fixed when our windows signing key …
1:57 PM Ticket #16375 ('Segmentation' object has no attribute 'data') closed by Zach Pearson: fixed: Use a daily build
1:56 PM Ticket #18453 (ffmpeg: permission denied) closed by Tom Goddard: duplicate
1:55 PM Ticket #18342 (PySide6: AttributeError: 'MoleculesTable' object has no attribute ...) closed by Zach Pearson: fixed: Fixed with new qtshim that promotes enums on PySide6 like it does for …
1:54 PM Ticket #18433 (Segmentations tool: AttributeError: 'MRCGrid' object has no attribute ...) closed by Zach Pearson: duplicate: Use a daily build
1:54 PM Ticket #18435 (PySide error: AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' ...) closed by Zach Pearson: fixed: Fixed with new qtshim that promotes enums on PySide6. Use a newer …
1:50 PM Ticket #18445 (AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' object has no ...) closed by Zach Pearson: fixed: Fixed with new qtshim that promotes PySide6 enums. Use a newer daily …
1:07 PM Ticket #18453 (ffmpeg: permission denied) created by cborghese@…: […]
12:58 PM Ticket #18249 (Crash destroying OpenGL context on exit) closed by Tom Goddard: can't reproduce: No response from reporter.
12:57 PM Ticket #18280 (Crash in Qt waking from sleep on Mac, multiple displays) closed by Tom Goddard: can't reproduce: No response from reporter.
12:56 PM Ticket #18302 (Crash in multiply_matrix_lists) closed by Tom Goddard: can't reproduce: ChimeraX crashed manipulating position matrices, probably because a …
12:54 PM Ticket #18343 (Qt fatal error: GLOzone not found for unknown) closed by Tom Goddard: can't reproduce: No response from reporter.
12:52 PM Ticket #18452 (ffmpeg PermissionError: [Errno 13] Permission denied: ...) closed by Tom Goddard: duplicate: Fixed in 1.10.1 release.
12:50 PM Ticket #18451 (Crash in Qt 6.9.1 event loop after Boltz prediction) closed by Tom Goddard: can't reproduce
12:46 PM Ticket #18449 (Error in restoring session: bond rotators) closed by Tom Goddard: duplicate
12:45 PM Ticket #18448 (Error restoring session bond rotators) closed by Tom Goddard: duplicate: Duplicate of #18447
12:42 PM Ticket #18446 (Crash in Qt window toolkit in Mac QAccessibleCache::removeCocoaElement()) closed by Tom Goddard: can't reproduce
12:34 PM Ticket #18443 (Showing DiffFit tool: OSError: [Errno 28] No space left on device) closed by Tom Goddard: limitation
12:31 PM Ticket #18442 (Crash in Qt in Mac NSAccessibilityPerformEntryPointBOOL) closed by Tom Goddard: duplicate
12:28 PM Ticket #18440 (Crash in python_instances_of_class) closed by Tom Goddard: duplicate
12:26 PM Ticket #18439 (Crash in python_instances_of_class) closed by Tom Goddard: duplicate
12:16 PM Ticket #18436 (Windows crash in save dialog in Segger SaveRegsToMRC()) closed by Tom Goddard: can't reproduce
12:05 PM Ticket #18434 (Mac wake from sleep crash) closed by Tom Goddard: duplicate
11:59 AM Ticket #18431 (Crash in Qt event loop in Mac AutoreleasePoolPage) closed by Tom Goddard: can't reproduce
9:18 AM Ticket #18452 (ffmpeg PermissionError: [Errno 13] Permission denied: ...) created by chimerax-bug-report@…: […]
7:27 AM Ticket #18451 (Crash in Qt 6.9.1 event loop after Boltz prediction) created by chimerax-bug-report@…: […]
7:12 AM Ticket #18450 (XMAS tool: AttributeError: 'Tabular' object has no attribute ...) created by emilio.cirri@…: […]
6:18 AM Ticket #18449 (Error in restoring session: bond rotators) created by chimerax-bug-report@…: […]
6:17 AM Ticket #18448 (Error restoring session bond rotators) created by chimerax-bug-report@…: […]
6:17 AM Ticket #18447 (Error restoring session: self.bond_rotaters.values(): ...) created by chimerax-bug-report@…: […]
1:48 AM Ticket #18446 (Crash in Qt window toolkit in Mac QAccessibleCache::removeCocoaElement()) created by chimerax-bug-report@…: […]
12:22 AM Ticket #18445 (AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' object has no ...) created by chimerax-bug-report@…: […]

Aug 14, 2025:

9:17 PM Ticket #18444 ("PDB" file contains non-ASCII character or control character) created by chimerax-bug-report@…: […]
8:28 PM Ticket #18443 (Showing DiffFit tool: OSError: [Errno 28] No space left on device) created by houj2024@…: […]
3:22 PM 2025-8-14 edited by Tom Goddard: (diff)
2:33 PM 2025-8-14 edited by Tom Goddard: (diff)
1:47 PM Ticket #18442 (Crash in Qt in Mac NSAccessibilityPerformEntryPointBOOL) created by chimerax-bug-report@…: […]
1:22 PM ChangeLog edited by Elaine Meng: (diff)
1:21 PM ChangeLog edited by Elaine Meng: (diff)
11:52 AM Ticket #18441 (Segmentations: ModuleNotFoundError: No module named 'chmerax') created by chimerax-bug-report@…: […]
10:39 AM Ticket #18440 (Crash in python_instances_of_class) created by herrera.alfa@…: […]
10:33 AM Ticket #18439 (Crash in python_instances_of_class) created by herrera.alfa@…: […]
10:26 AM Ticket #18438 (SEQCROW: ValueError: could not broadcast input array from shape (0,) ...) created by kpm.shameem@…: […] irc_s_forward.out
10:10 AM Ticket #18437 (Crash in python_instances_of_class after "build join" command) created by herrera.alfa@…: […]
9:19 AM Ticket #18436 (Windows crash in save dialog in Segger SaveRegsToMRC()) created by chimerax-bug-report@…: […]
8:25 AM Ticket #18435 (PySide error: AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' ...) created by chimerax-bug-report@…: […]
6:45 AM Ticket #18434 (Mac wake from sleep crash) created by chimerax-bug-report@…: […]
2:13 AM Ticket #18433 (Segmentations tool: AttributeError: 'MRCGrid' object has no attribute ...) created by chimerax-bug-report@…: […]

Aug 13, 2025:

8:28 PM Ticket #18432 (kvfinder KeyError: 'KAA') created by chimerax-bug-report@…: […]
6:16 PM Ticket #18429 (Models with same ID in session) closed by Tom Goddard: can't reproduce: I'm not sure what they are trying to report since the duplicate model …
6:16 PM Ticket #18431 (Crash in Qt event loop in Mac AutoreleasePoolPage) created by chimerax-bug-report@…: […]
5:50 PM Ticket #18430 (Parsing mmCIF ma_qa_metric_local residue scores complains about ...) created by goddard@…: […] ligand1_model_0.cif
5:39 PM Ticket #18395 (Compound-description size change changes table size instead of dialog size) closed by pett: limitation: I don't think this is feasible. In the code where I lay out the …
4:47 PM Ticket #18429 (Models with same ID in session) created by chimerax-bug-report@…: […]
4:38 PM Ticket #18427 (C++ structure position not always updated) closed by pett: fixed: Instead, made the workaround I suggested to Tristan the actual fix. …
4:23 PM Ticket #18427 (C++ structure position not always updated) reopened by pett: On the other hand, I don't think that fix is correct at all -- hold on.
4:19 PM Ticket #18427 (C++ structure position not always updated) closed by pett: fixed: Fixed. If something wonky happens with moving models or …
11:29 AM Ticket #18426 (Boltz-related problems) closed by Tom Goddard: can't reproduce: Have seen this apparent loss of GPU OpenGL context several times, only …
11:23 AM Ticket #18425 (Picking: Singular matrix) closed by Tom Goddard: can't reproduce: This ChimeraX error about a singular matrix when you hover the mouse …
9:30 AM Ticket #18428 (Picking: Singular matrix) closed by pett: duplicate: Duplicate of #18425
8:43 AM Ticket #18424 (Crash at startup) closed by pett: can't reproduce
8:42 AM Ticket #18423 ('pip install pyKVFinder' fails with empty error message) closed by pett: duplicate
8:40 AM Ticket #18422 (Proofpoint Essentials - Quarantine Digest) closed by pett: not a bug
8:39 AM Ticket #18421 (Crash using open/save dialog) closed by pett: can't reproduce
8:38 AM Ticket #18420 (ffmpeg: Permission denied) closed by pett: duplicate: Hi Arvind, Thanks for reporting this problem. It is fixed in the …
8:35 AM Ticket #18419 (KVFinder on old MacOS) closed by pett: limitation: Hi Leo, Unfortunately, the underlying pyKVFinder program that …
8:24 AM Ticket #18428 (Picking: Singular matrix) created by angela.fala@…: […]
8:09 AM Ticket #18427 (C++ structure position not always updated) created by Tristan Croll: […]
6:20 AM Ticket #18426 (Boltz-related problems) created by chimerax-bug-report@…: […]
4:55 AM Ticket #18425 (Picking: Singular matrix) created by angela.fala@…: […]
4:25 AM Ticket #18424 (Crash at startup) created by chimerax-bug-report@…: […]
1:26 AM Ticket #18423 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…: […]

Aug 12, 2025:

9:01 PM Ticket #18422 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…: […]
6:50 PM DeveloperMeetings edited by Tom Goddard: (diff)
6:49 PM 2025-8-14 edited by Tom Goddard: (diff)
6:49 PM DeveloperMeetings edited by Tom Goddard: (diff)
2:56 PM Dev2025-8-11 edited by pett: (diff)
2:47 PM C++Features edited by pett: (diff)
2:45 PM C++Features edited by pett: (diff)
2:39 PM C++Features edited by pett: (diff)
2:33 PM C++Features edited by pett: (diff)
2:29 PM C++Features edited by pett: (diff)
1:54 PM C++Features created by pett
1:52 PM Ticket #18421 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
1:43 PM Features edited by pett: (diff)
1:21 PM Ticket #18245 (ChimeraX hangs recomputing RMSD headers for sequence viewer when ...) closed by pett: fixed: There was a bug where the alignment was registering additional …
12:47 PM Ticket #18420 (ffmpeg: Permission denied) created by angrish.arvind@…: […]
12:45 PM Ticket #18419 (KVFinder on old MacOS) created by leo.zhu@…: […]
12:00 PM Ticket #18416 (Volume sdLevel is not from mean but from from zero) closed by Tom Goddard: fixed: Wow, that is embarrassing. That wrong sdLevel calculation has been in …
11:34 AM Ticket #18412 (Crash in glBufferSubData) closed by Tom Goddard: can't reproduce: ChimeraX crashed in the Apple OpenGL graphics driver in …
11:25 AM DeveloperMeetings edited by Tom Goddard: (diff)
11:25 AM DeveloperMeetings edited by Tom Goddard: (diff)
11:24 AM 2025-8-14 created by Tom Goddard
11:23 AM DeveloperMeetings edited by Tom Goddard: (diff)
11:14 AM Ticket #18300 (ViewDock suggestions) closed by pett: fixed: Hi Andrii, I believe I have addressed all these issues now: 1) There …
10:08 AM ChangeLog edited by pett: (diff)
9:42 AM Ticket #18418 (ffmpeg: Permission denied) closed by pett: duplicate
9:40 AM Ticket #18417 (ChargeError not caught) closed by pett: duplicate
9:38 AM Ticket #18415 (Session restore: ItemTable's selectionModel() is None (Parsing ...) closed by pett: duplicate: Duplicate of #16654
9:34 AM Ticket #18414 (Crash on Mac waking from sleep) closed by pett: duplicate
9:25 AM Ticket #18413 (QScore: scores is None) closed by pett: duplicate: Another duplicate of #17983
9:20 AM Ticket #18411 (KVFinder on old MacOS) closed by pett: limitation: Hi Esteban, Unfortunately, the underlying pyKVFinder program that …
7:30 AM Ticket #18418 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]
4:56 AM Ticket #18417 (ChargeError not caught) created by chimerax-bug-report@…: […]
3:59 AM Ticket #18416 (Volume sdLevel is not from mean but from from zero) created by sergei.gurianov@…: […]
3:30 AM Ticket #18415 (Session restore: ItemTable's selectionModel() is None (Parsing ...) created by chimerax-bug-report@…: […]

Aug 11, 2025:

10:58 PM Ticket #18414 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:44 PM Ticket #18413 (QScore: scores is None) created by chimerax-bug-report@…: […]
4:20 PM Dev2025-8-11 edited by Tom Goddard: (diff)
4:18 PM Dev2025-8-11 edited by Tom Goddard: (diff)
4:17 PM Dev2025-8-11 edited by Tom Goddard: (diff)
4:17 PM Dev2025-8-11 edited by Tom Goddard: (diff)
2:12 PM Ticket #18412 (Crash in glBufferSubData) created by apadavannil@…: […]
12:08 PM Ticket #18411 (KVFinder on old MacOS) created by estebancserra@…: […]
11:47 AM Ticket #18410 (isolde start sim: RuntimeError: clEnqueueReadBuffer) created by lehuetalex@…: […]
11:44 AM Ticket #18404 (boltz predict: FileNotFoundError) closed by Tom Goddard: not a bug: Appears that ChimeraX tried to start a boltz subprocess but the boltz …
11:23 AM Ticket #18403 (alphafold pae: JSONDecodeError (DropBox)) closed by Tom Goddard: nonchimerax: The AlphaFold PAE json file in Dropbox was empty when ChimeraX tried …
11:19 AM Ticket #18400 (vop subtract: ArrayMemoryError) closed by Tom Goddard: limitation: User opened multiple 4 GB maps (1000 x 1000 x 1000 float32) and ran …
11:13 AM Ticket #18409 ('pip install pyKVFinder' fails with empty error message) created by alexandrevasconcelosjr@…: […]
11:11 AM Ticket #18408 (Crash on Mac waking from sleep) closed by pett: duplicate
11:11 AM Ticket #18407 (QScore: scores is None) closed by pett: duplicate: Looks like a duplicate of #17983
11:06 AM Ticket #18408 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
11:06 AM Ticket #18405 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett: duplicate: Duplicate of #18238
10:58 AM Ticket #18402 (ffmpeg: Permission denied) closed by pett: duplicate
2:39 AM Ticket #18407 (QScore: scores is None) created by chimerax-bug-report@…: […]

Aug 10, 2025:

6:36 PM Ticket #18406 (CopickPicksFile: argument after ** must be a mapping, not list) created by chimerax-bug-report@…: […]
1:27 AM Ticket #18405 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…: […]
1:14 AM Ticket #18404 (boltz predict: FileNotFoundError) created by chimerax-bug-report@…: […]

Aug 9, 2025:

2:54 PM Ticket #18403 (alphafold pae: JSONDecodeError (DropBox)) created by chimerax-bug-report@…: […]
1:22 PM Ticket #18402 (ffmpeg: Permission denied) created by chimerax-bug-report@…: […]

Aug 8, 2025:

5:51 PM Ticket #9465 (Report chirality) closed by pett: fixed: Implemented a "chirality" command whose syntax is: chirality …
12:43 PM Ticket #18401 (Show Alphabridge interface circle plot for Boltz predictions) created by arun.gupta@…: Arun Gupta asked on the ChimeraX mailing list about using Boltz …
12:32 PM Ticket #18396 (Ribbon does not include non-standard residues) closed by Tom Goddard: not a bug: Residue 2 in chain B of 8EBK has no C-alpha atom (name CA) and ribbons …
10:17 AM Ticket #18400 (vop subtract: ArrayMemoryError) created by chimerax-bug-report@…: […]
9:19 AM Ticket #18399 (Cannot submit Clipper) created by Tristan Croll: […]
9:06 AM Ticket #18398 (Crash in event loop) closed by pett: can't reproduce
9:05 AM Ticket #18397 (Multiple consecutive Find Cavities: dead models) closed by pett: can't reproduce
7:55 AM Ticket #18398 (Crash in event loop) created by chimerax-bug-report@…: […]
2:45 AM Ticket #18397 (Multiple consecutive Find Cavities: dead models) created by chimerax-bug-report@…: […]

Aug 7, 2025:

11:56 PM Ticket #18396 (Ribbon does not include non-standard residues) created by e24soep0001@…: […] Screenshot 2025-08-08 121834.png
3:13 PM Ticket #18394 (ViewDock not showing MAE format in open dialog) closed by pett: fixed: Fix: …
2:25 PM Ticket #18395 (Compound-description size change changes table size instead of dialog size) created by Elaine Meng: One other mildly annoying thing is that switching from multiple …
2:22 PM Ticket #18394 (ViewDock not showing MAE format in open dialog) created by Elaine Meng: I just tried to use ViewDock on example maestro files from Phil, but …
2:20 PM 2025-8-7 edited by Tom Goddard: (diff)
2:13 PM Ticket #18391 (The option for predicting affinity cannot be found.) closed by Tom Goddard: not a bug: The affinity option is only in the ChimeraX daily build, not the …
2:13 PM Ticket #18393 (The option for predicting affinity cannot be found.) closed by pett: duplicate
2:12 PM Ticket #18392 (The option for predicting affinity cannot be found.) closed by pett: duplicate
2:08 PM Ticket #18387 (volume level: ArrayMemoryError) closed by Tom Goddard: nonchimerax: Out of memory trying to allocate 800 MB for showing a volume at step …
2:05 PM Ticket #18389 (Crash emitting signal from button) closed by pett: can't reproduce
2:02 PM Ticket #18388 (Crash in event loop) closed by pett: can't reproduce
1:54 PM Ticket #18386 (Deep sequence viewer recursion) closed by pett: can't reproduce: Would need the input file
1:45 PM Ticket #18385 (Crash on Mac waking from sleep) closed by pett: duplicate
1:39 PM Ticket #18383 (H-Bonds: acc_phi_psi() bad number of arguments) closed by pett: not a bug
1:33 PM Ticket #18393 (The option for predicting affinity cannot be found.) created by mxdxsy@…: […]
1:29 PM Ticket #18392 (The option for predicting affinity cannot be found.) created by 1926853893@…: […]
1:28 PM Ticket #18391 (The option for predicting affinity cannot be found.) created by 1926853893@…: […] 0808_1.jpg
12:58 PM Ticket #18390 (viewdock state (columns?) not saved in session) created by Elaine Meng: Session did not save which columns were shown (checkboxes seem correct …
10:53 AM Ticket #18389 (Crash emitting signal from button) created by chimerax-bug-report@…: […]
6:54 AM Ticket #18388 (Crash in event loop) created by chimerax-bug-report@…: […]
6:06 AM Ticket #18387 (volume level: ArrayMemoryError) created by chimerax-bug-report@…: […]
4:05 AM Ticket #18386 (Deep sequence viewer recursion) created by chimerax-bug-report@…: […]
3:49 AM Ticket #18385 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Aug 6, 2025:

10:06 PM Ticket #18384 (copick: 'CopickRunFSSpec' object has no attribute 'tomograms') created by chimerax-bug-report@…: […]
5:11 PM phenix-8-6-25 edited by pett: (diff)
5:11 PM phenix-8-6-25 edited by pett: (diff)
4:41 PM phenix-8-6-25 edited by pett: (diff)
1:52 PM Ticket #18383 (H-Bonds: acc_phi_psi() bad number of arguments) created by chimerax-bug-report@…: […]
1:46 PM Ticket #18381 (Crash in garbage collection) closed by pett: duplicate
1:23 PM Ticket #18382 (ISOLDE not installable into 1.10.1) created by weberm@…: […]
12:51 PM phenix-8-6-25 edited by pett: (diff)
12:06 PM phenix-8-6-25 edited by pett: (diff)
11:50 AM phenix-8-6-25 edited by pett: (diff)
11:44 AM phenix-8-6-25 edited by pett: (diff)
11:30 AM phenix-8-6-25 edited by pett: (diff)
11:25 AM Ticket #18381 (Crash in garbage collection) created by chimerax-bug-report@…: […]
11:20 AM phenix-8-6-25 edited by pett: (diff)
11:12 AM phenix-8-6-25 edited by pett: (diff)
10:23 AM Ticket #18379 (Crash opening mmCIF) closed by Greg Couch: can't reproduce: Looks like it might be a Coot mmCIF file. This is probably a …
10:23 AM phenix-8-6-25 created by pett
10:23 AM Features edited by pett: (diff)
9:51 AM Ticket #18380 ('MRCGrid' object has no attribute 'dicom_data') closed by pett: duplicate
9:48 AM Ticket #18377 (Crash on Mac waking from sleep) closed by pett: duplicate
8:28 AM Ticket #18380 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
8:18 AM Ticket #18379 (Crash opening mmCIF) created by chimerax-bug-report@…: […]

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