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#18618 closed defect (duplicate)

ui view fourup: division by zero

Reported by:	chimerax-bug-report@…	Owned by:	Zach Pearson
Priority:	normal	Milestone:
Component:	DICOM	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-3.10.0-1160.108.1.el7.x86_64-x86_64-with-glibc2.38
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  

> set selectionWidth 4

Done loading forcefield  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> isolde set simFidelityMode Highest/Slowest

ISOLDE: setting sim fidelity mode to Highest/Slowest  
nonbonded_cutoff_distance = 1.700000  
use_gbsa = True  
gbsa_cutoff = 2.000000  

> open /mnt/work3/CS-cnt-prot/J51/J51_class_00_00182_volume.mrc /mnt/work3/CS-
> cnt-prot/J51/J51_class_01_00182_volume.mrc

Opened J51_class_00_00182_volume.mrc as #1.1, grid size 128,128,128, pixel
2.93, shown at level 0.178, step 1, values float32  
Opened J51_class_01_00182_volume.mrc as #1.2, grid size 128,128,128, pixel
2.93, shown at level 0.178, step 1, values float32  

> volume #1.2 level 0.3472

> volume #1.1 level 0.5064

> volume #1.2 level 0.5338

> select add #1.1

2 models selected  

> ui mousemode right "translate selected models"

> view matrix models #1.1,1,0,0,-69.315,0,1,0,-13.337,0,0,1,-1.3112

> select subtract #1.1

Nothing selected  

> volume #1.2 level 0.6289

> volume #1.1 level 0.6042

> volume #1.2 level 1.08

> volume #1.1 level 1.034

> volume #1.2 level 1.076

> ui tool show "Segment Map"

Segmenting J51_class_01_00182_volume.mrc, density threshold 1.076122  
Showing 3 region surfaces  
22 watershed regions, grouped to 3 regions  
Showing J51_class_01_00182_volume.seg - 3 regions, 3 surfaces  
Ungrouped to 2 regions  
Smoothing and grouping, standard deviation 4 voxels  
Showing 3 region surfaces  
Got 3 regions after smoothing 4 voxels.  
Smoothing and grouping, standard deviation 5 voxels  
No new groups smoothing 5 voxels  
Showing 2 region surfaces  
Got 2 regions after smoothing 6 voxels.  
Smoothing and grouping, standard deviation 7 voxels  
No new groups smoothing 7 voxels  
No new groups smoothing 8 voxels  
No new groups smoothing 9 voxels  
No new groups smoothing 10 voxels  
No new groups smoothing 11 voxels  
No new groups smoothing 12 voxels  
No new groups smoothing 13 voxels  
No new groups smoothing 14 voxels  
No new groups smoothing 15 voxels  
No new groups smoothing 16 voxels  
No new groups smoothing 17 voxels  
No new groups smoothing 18 voxels  
No new groups smoothing 19 voxels  
No new groups smoothing 20 voxels  
No new groups smoothing 21 voxels  
No new groups smoothing 22 voxels  
No new groups smoothing 23 voxels  
No new groups smoothing 24 voxels  
No new groups smoothing 25 voxels  
No new groups smoothing 26 voxels  
No new groups smoothing 27 voxels  
No new groups smoothing 28 voxels  
No new groups smoothing 29 voxels  
Showing 1 region surfaces  
Got 1 regions after smoothing 30 voxels.  
J51_class_01_00182_volume.seg has 1 regions  

> hide #2.1 models

> show #2.1 models

> select add #2.1

1 model selected  
Segmenting J51_class_01_00182_volume.mrc, density threshold 1.076122  
Showing 3 region surfaces  
22 watershed regions, grouped to 3 regions  
Showing J51_class_01_00182_volume.seg - 3 regions, 3 surfaces  

> close #2

> close

> open /mnt/work3/CS-cnt-prot/J51/J51_class_00_00182_volume.mrc

Opened J51_class_00_00182_volume.mrc as #1, grid size 128,128,128, pixel 2.93,
shown at level 0.178, step 1, values float32  

> volume #1 level 1.308

> volume #1 level 1.062

> ui tool show "Segment Map"

Segmenting J51_class_00_00182_volume.mrc, density threshold 1.061843  
Showing 4 region surfaces  
21 watershed regions, grouped to 4 regions  
Showing J51_class_00_00182_volume.seg - 4 regions, 4 surfaces  
Smoothing and grouping, standard deviation 5 voxels  
Showing 2 region surfaces  
Got 2 regions after smoothing 5 voxels.  
Smoothing and grouping, standard deviation 6 voxels  
Showing 1 region surfaces  
Got 1 regions after smoothing 6 voxels.  

> select add #2.1

1 model selected  

> select subtract #2.1

Nothing selected  
Please select one ore more regions to save to .mrc file  

> select add #2.1

1 model selected  
Saving 1 regions to mrc file...  
Opened J51_class_00_00182_volume_CNT.mrc as #3, grid size 9,11,111, pixel
2.93, shown at step 1, values float32  
Wrote J51_class_00_00182_volume_CNT.mrc  

> hide #2.1 models

> volume #1 level 0.405

> volume subtract #3 #1

Opened volume difference as #4, grid size 9,11,111, pixel 2.93, shown at step
1, values float32  

> volume #4 level -0.6154

> volume #3 level 1.086

> volume gausian #3 sDev2

Expected a density maps specifier or a keyword  

> volume gaussian #3 sDev2

Expected a keyword  

> volume gaussian #3 sDev 2

Opened J51_class_00_00182_volume_CNT.mrc gaussian as #5, grid size 9,11,111,
pixel 2.93, shown at step 1, values float32  

> show #2.1 models

> hide #2.1 models

> show #!1 models

> hide #!1 models

> hide #!2 models

> volume #5 level 0.8447

> volume subtract #5 #1

Opened volume difference as #6, grid size 9,11,111, pixel 2.93, shown at step
1, values float32  

> show #!4 models

> close #4

> volume #6 level -0.3943

> close #6

> close #5

> close #3

> close #2.1

> show #!1 models

> volume #1 level 1.155

> ui tool show "Map Eraser"

> volume #1 level 1.012

> volume erase #1 center 187.19,187.5,187.59 radius 6.9764

Opened J51_class_00_00182_volume.mrc copy as #4, grid size 128,128,128, pixel
2.93, shown at step 1, values float32  

> volume erase #4 center 188.11,187.37,198.53 radius 6.9288

> volume erase #4 center 188.29,187.98,206.16 radius 6.367

> volume erase #4 center 187.05,188.95,210.49 radius 6.367

> volume erase #4 center 185.94,186.9,215.6 radius 6.367

> volume erase #4 center 186.54,186.26,222.86 radius 6.367

> volume erase #4 center 186.71,185.97,229.94 radius 6.367

> volume erase #4 center 186.74,185.79,237.85 radius 6.367

> volume erase #4 center 186.67,185.9,235.07 radius 6.367

> volume erase #4 center 186.83,187.43,244.8 radius 6.367

> volume erase #4 center 186.6,186.4,252.5 radius 6.367

> volume erase #4 center 186.02,186.58,259.71 radius 6.367

> volume erase #4 center 187.67,187.17,267.12 radius 6.367

> volume erase #4 center 189.09,188.12,273.99 radius 6.367

> volume erase #4 center 190.37,188.59,279.78 radius 6.367

> volume erase #4 center 186.81,187.24,281.85 radius 6.367

> volume erase #4 center 187.06,186.63,290.55 radius 6.367

> volume erase #4 center 187.41,186.1,298.69 radius 6.367

> volume erase #4 center 187.97,185.7,306 radius 6.367

> volume erase #4 center 187.82,184.96,314.71 radius 6.367

> volume erase #4 center 185.63,187.51,314.24 radius 6.367

> volume erase #4 center 186.46,185.58,325.47 radius 6.367

> volume erase #4 center 186.09,185.24,334.05 radius 6.367

> volume erase #4 center 186.19,184.55,340.66 radius 6.367

> volume erase #4 center 186.13,187.6,180.22 radius 6.367

> volume erase #4 center 186.84,187.73,172.77 radius 6.367

> volume erase #4 center 187.52,187.84,165.72 radius 6.367

> volume erase #4 center 188.31,187.76,159.08 radius 6.367

> volume erase #4 center 187.35,186.28,153.18 radius 6.367

> volume erase #4 center 187.66,187.17,144.93 radius 6.367

> volume erase #4 center 187.33,187.6,136.06 radius 6.367

> volume erase #4 center 187.31,188.26,127.39 radius 6.367

> volume erase #4 center 186.52,188.25,119.72 radius 6.367

> volume erase #4 center 186.46,186.83,117.3 radius 6.367

> volume erase #4 center 186.29,187.01,109.62 radius 6.367

> volume erase #4 center 187.89,187.47,102.59 radius 6.367

> volume erase #4 center 187.67,187.25,95.277 radius 6.367

> volume erase #4 center 187.01,186.56,87.362 radius 6.367

> volume erase #4 center 186.21,187.14,78.529 radius 6.367

> volume erase #4 center 185.56,187.23,71.072 radius 6.367

> volume erase #4 center 184.99,186.87,64.391 radius 6.367

> volume erase #4 center 184.34,186.96,56.934 radius 6.367

> volume erase #4 center 188.36,187.2,56.557 radius 6.367

> volume erase #4 center 188.24,188.1,64.597 radius 6.367

> volume erase #4 center 187.37,185.95,46.156 radius 6.367

> volume erase #4 center 187.11,187.47,36.016 radius 6.367

> volume #1 level 1.435

> volume #4 level 0.5699

> save /mnt/work3/CS-cnt-prot/J51/J51_class_00_00182_volume_CNT.mrc models #4

> volume #4 level 0.4508

> volume #4 level 0.5493

> close

> open /mnt/work3/CS-cnt-prot/J50/J50_004_volume_map_sym_sharp.mrc format mrc

Opened J50_004_volume_map_sym_sharp.mrc as #1, grid size 256,256,256, pixel
1.46, shown at level 0.0495, step 1, values float32  

> volume #1 level 0.8371

> ui tool show "Segment Map"

Segmenting J50_004_volume_map_sym_sharp.mrc, density threshold 0.837116  
Showing 8 region surfaces  
219 watershed regions, grouped to 8 regions  
Showing J50_004_volume_map_sym_sharp.seg - 8 regions, 8 surfaces  
Smoothing and grouping, standard deviation 5 voxels  
No new groups smoothing 5 voxels  
No new groups smoothing 6 voxels  
No new groups smoothing 7 voxels  
No new groups smoothing 8 voxels  
Showing 7 region surfaces  
Got 7 regions after smoothing 9 voxels.  
Smoothing and grouping, standard deviation 10 voxels  
Showing 6 region surfaces  
Got 6 regions after smoothing 10 voxels.  
Smoothing and grouping, standard deviation 11 voxels  
No new groups smoothing 11 voxels  
No new groups smoothing 12 voxels  
No new groups smoothing 13 voxels  
No new groups smoothing 14 voxels  
Showing 5 region surfaces  
Got 5 regions after smoothing 15 voxels.  
Smoothing and grouping, standard deviation 16 voxels  
No new groups smoothing 16 voxels  
Showing 4 region surfaces  
Got 4 regions after smoothing 17 voxels.  
Smoothing and grouping, standard deviation 18 voxels  
Showing 2 region surfaces  
Got 2 regions after smoothing 18 voxels.  
Smoothing and grouping, standard deviation 19 voxels  
No new groups smoothing 19 voxels  
No new groups smoothing 20 voxels  
No new groups smoothing 21 voxels  
No new groups smoothing 22 voxels  
No new groups smoothing 23 voxels  
No new groups smoothing 24 voxels  
No new groups smoothing 25 voxels  
No new groups smoothing 26 voxels  
Showing 1 region surfaces  
Got 1 regions after smoothing 27 voxels.  

> volume #1 level 0.2479

Segmenting J50_004_volume_map_sym_sharp.mrc, density threshold 0.247856  
Showing 8 region surfaces  
1280 watershed regions, grouped to 8 regions  
Showing J50_004_volume_map_sym_sharp.seg - 8 regions, 8 surfaces  

> volume #1 level 0.4346

> select #2.2

1 model selected  

> select #2.4

1 model selected  

> select #2.8

1 model selected  

> select #2.4

1 model selected  

> select add #2.5

2 models selected  

> select add #2.3

3 models selected  

> select add #2.6

4 models selected  

> select add #2.7

5 models selected  

> select add #2.8

6 models selected  

> select add #2.2

7 models selected  

> select add #2.1

8 models selected  

> volume #1 level 0.7379

> color #2 #1c71d8ff

> select add #2

9 models selected  

> select subtract #2

Nothing selected  

> hide #!2 models

> show #!2 models

> show #2.1 models

> close #2

> volume #1 level 0.9188

> ui tool show Segmentations

> ui view fourup

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> ui view fourup

Traceback (most recent call last):  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event  
self.enterEvent()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 917, in enterEvent  
self.resize3DSegmentationCursor()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1009, in
resize3DSegmentationCursor  
psize = self.view.pixel_size()  
^^^^^^^^^^^^^^^^^^^^^^  
File "/app/lib/python3.11/site-packages/chimerax/graphics/view.py", line 1085,
in pixel_size  
return self.camera.view_width(p) / self.window_size[0]  
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~  
ZeroDivisionError: division by zero  
  
ZeroDivisionError: division by zero  
  
File "/app/lib/python3.11/site-packages/chimerax/graphics/view.py", line 1085,
in pixel_size  
return self.camera.view_width(p) / self.window_size[0]  
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~  
  
See log for complete Python traceback.  
  

> segmentations create #1

Opened segmentation 1 of J50_004_volume_map_sym_sharp.mrc as #5, grid size
256,256,256, pixel 1.46, shown at level 0.501, step 1, values float64  

> undo

[Repeated 5 time(s)]

> select clear

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> ui view overunder

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> ui view fourup

> close session

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> open /mnt/work3/CS-cnt-prot/J51/J51_class_00_00182_volume.mrc format mrc

Opened J51_class_00_00182_volume.mrc as #1, grid size 128,128,128, pixel 2.93,
shown at level 0.178, step 1, values float32  

> volume #1 level 1.214

> volume erase #1 center 186.98,186.71,190.53 radius 4.9565

Opened J51_class_00_00182_volume.mrc copy as #3, grid size 128,128,128, pixel
2.93, shown at step 1, values float32  

> volume erase #3 center 187.81,187.59,199.28 radius 4.8689

> volume erase #3 center 187.5,188.18,206.77 radius 4.8689

> volume erase #3 center 185.58,188.34,212.86 radius 4.8689

> volume erase #3 center 185.89,187.95,219.22 radius 4.8689

> volume erase #3 center 188.37,186.76,225.83 radius 4.8689

> volume erase #3 center 189.1,187.69,233.71 radius 4.8689

> volume erase #3 center 187.2,187.34,236.92 radius 4.8689

> volume erase #3 center 187.71,187.17,242.08 radius 4.8689

> volume erase #3 center 185.82,187.85,247.3 radius 4.8689

> volume erase #3 center 188.5,185.47,247.6 radius 4.8689

> volume erase #3 center 186.55,186.57,252.83 radius 4.8689

> volume erase #3 center 186.49,186.17,259.18 radius 4.8689

> volume erase #3 center 186.75,185.55,265.12 radius 4.8689

> volume erase #3 center 188.14,187.27,266.23 radius 4.8689

> volume erase #3 center 187.85,187.3,273.79 radius 4.8689

> volume erase #3 center 187.68,187.56,278.55 radius 4.8689

> volume erase #3 center 187.41,186.66,283.77 radius 4.8689

> volume erase #3 center 187.2,187.44,290.49 radius 4.8689

> volume erase #3 center 186.81,186.28,298.12 radius 4.8689

> volume erase #3 center 187.96,187.33,306.34 radius 4.8689

> volume erase #3 center 187.77,185.31,314.6 radius 4.8689

> volume erase #3 center 187.85,183.56,322.44 radius 4.8689

> volume erase #3 center 188.02,184.26,331.6 radius 4.8689

> volume erase #3 center 185.99,189.03,185.21 radius 5.2434

> volume erase #3 center 185.92,188.72,177.65 radius 5.2434

> volume erase #3 center 186.1,188.75,169.31 radius 5.2434

> volume erase #3 center 186.4,186.71,170.21 radius 5.2434

> volume erase #3 center 187.06,186.94,163.07 radius 5.2434

> volume erase #3 center 187.91,186.79,155.57 radius 5.2434

> volume erase #3 center 187.18,187.14,149.18 radius 5.2434

> volume erase #3 center 187.35,186.83,141.24 radius 5.2434

> volume erase #3 center 186.76,188.08,134.33 radius 5.2434

> volume erase #3 center 188.2,188.77,128.41 radius 5.2434

> volume erase #3 center 188.44,187.72,121.18 radius 5.2434

> volume erase #3 center 187.33,185.75,116.2 radius 5.2434

> volume erase #3 center 187.25,187.74,109.48 radius 5.2434

> volume erase #3 center 186.64,187.96,101.96 radius 5.2434

> volume erase #3 center 186.09,186.94,95.983 radius 5.2434

> volume erase #3 center 188.02,187.08,90.001 radius 5.2434

> volume erase #3 center 187.77,187.27,82.851 radius 5.2434

> volume erase #3 center 187.53,187.45,76.098 radius 5.2434

> volume erase #3 center 186.95,187.99,68.184 radius 5.2434

> volume erase #3 center 189.32,188.19,62.058 radius 5.2434

> volume erase #3 center 187.86,188,55.817 radius 5.2434

> volume erase #3 center 188.3,186.72,46.634 radius 5.2434

> volume erase #3 center 187.25,186.8,43.938 radius 5.2434

> hide #2 models

Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2167, in mouseMoveEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2174, in mouseReleaseEvent  
self._drag(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line
2171, in _drag  
cb(event)  
File "/app/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416,
in move_marker_cb  
cb(m)  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1635, in
moved_marker_cb  
self.plane_viewer.update_and_rerender()  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
AttributeError: 'NoneType' object has no attribute 'update_drawings'  
  
File "/app/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 648, in
update_and_rerender  
self.view.drawing.parent.update_drawings()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 520.61.05
OpenGL renderer: NVIDIA GeForce GTX TITAN X/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=gnome-classic
XDG_SESSION_DESKTOP=gnome-classic
XDG_CURRENT_DESKTOP=GNOME-Classic:GNOME
DISPLAY=:99.0
Manufacturer: Silicon Mechanics
Model: Rackform R2504.v6
OS: Freedesktop SDK 23.08 Flatpak runtime
Architecture: 64bit ELF
Virtual Machine: detection failed
CPU: 48 Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz
Cache Size: 30720 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:           251Gi       7.4Gi       244Gi       127Mi       789Mi       244Gi
	Swap:          4.0Gi          0B       4.0Gi

Graphics:
	02:00.0 VGA compatible controller [0300]: NVIDIA Corporation GM200 [GeForce GTX TITAN X] [10de:17c2] (rev a1)	
	Subsystem: NVIDIA Corporation Device [10de:1132]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2024.6.2
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.23.1
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.8
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    distro: 1.9.0
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 24.1
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11

Change History (2)

comment:1 by Eric Pettersen, 3 months ago

Component:	Unassigned → DICOM
Owner:	set to Zach Pearson
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → ui view fourup: division by zero

comment:2 by Zach Pearson, 3 months ago

Resolution:	→ duplicate
Status:	assigned → closed

Should be fixed in any recent build.

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