![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 months ago
Closed 3 months ago
#18613 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.6-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x000000020abb20c0 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, chimerax.surface._surface, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, cython.cimports.libc.math, scipy._lib._ccallback_c, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.optimize._group_columns, scipy._lib.messagestream, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.spatial._ckdtree, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, scipy.optimize._direct, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize (total: 117)
{"app_name":"ChimeraX","timestamp":"2025-08-25 15:30:09.00 +0800","app_version":"1.9.0","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.9.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 15.6 (24G84)","roots_installed":0,"name":"ChimeraX","incident_id":"21D36728-ED0B-4DC5-B181-82491FE93563"}
{
"uptime" : 1000000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac14,2",
"coalitionID" : 41716,
"osVersion" : {
"train" : "macOS 15.6",
"build" : "24G84",
"releaseType" : "User"
},
"captureTime" : "2025-08-25 15:29:27.3298 +0800",
"codeSigningMonitor" : 1,
"incident" : "21D36728-ED0B-4DC5-B181-82491FE93563",
"pid" : 60693,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-08-23 22:18:21.3058 +0800",
"procStartAbsTime" : 21784873426870,
"procExitAbsTime" : 24116134244403,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"4B764D4A-44DA-587C-B5DB-F4B21D0B739E","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "72006326-E93A-79ED-CE4E-652FF4F2A5CE",
"appleIntelligenceStatus" : {"state":"unavailable","reasons":["regionIneligible","countryBillingIneligible","countryLocationIneligible"]},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRm+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkZDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "34370387-1AAD-46A8-8686-95F45E5D3615",
"wakeTime" : 4,
"sleepWakeUUID" : "75C99E60-85D6-4762-A7F2-F8916F34E80A",
"sip" : "enabled",
"vmRegionInfo" : "0x168 is not in any region. Bytes before following region: 4311678616\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 100ff0000-100ff4000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000168","rawCodes":[1,360],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000168"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":60693},
"ktriageinfo" : "CL - (arg = 0x0) cluster_pagein past EOF\nAPFS - (arg = 0x3bcc001600200040) cluster_pagein() failed\nVM - (arg = 0x1900000016) Filesystem pagein returned an error in vnode_pagein\nVM - (arg = 0x0) Page has error bit set\nCL - (arg = 0x0) cluster_pagein past EOF\n",
"vmregioninfo" : "0x168 is not in any region. Bytes before following region: 4311678616\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 100ff0000-100ff4000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":6155190600},{"value":99},{"value":104},{"value":1152921510373877984},{"value":0},{"value":127995403260445995},{"value":127995412023076331},{"value":14757395258967641293},{"value":4294967286},{"value":6155190529},{"value":0},{"value":49},{"value":4294967280},{"value":328},{"value":8787105112},{"value":0},{"value":11},{"value":259},{"value":8769970592,"symbolLocation":224,"symbol":"_main_thread"},{"value":0},{"value":1},{"value":4333422128,"symbolLocation":0,"symbol":"faulthandler_handlers"},{"value":8731136000,"symbolLocation":0,"symbol":"OBJC_IVAR_$_NSTouchBarInputMethodCandidateList._list"},{"value":8731136000,"symbolLocation":0,"symbol":"OBJC_IVAR_$_NSTouchBarInputMethodCandidateList._list"},{"value":4},{"value":16}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924925068},"cpsr":{"value":1073745920},"fp":{"value":6155190672},"sp":{"value":6155190640},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924690312,"matchesCrashFrame":1},"far":{"value":0}},"id":11721229,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":37768,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":219},{"imageOffset":26764,"symbol":"pthread_kill","symbolLocation":296,"imageIndex":220},{"imageOffset":265476,"symbol":"raise","symbolLocation":32,"imageIndex":221},{"imageOffset":2417160,"symbol":"faulthandler_fatal_error","symbolLocation":392,"imageIndex":1},{"imageOffset":13988,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":222},{"imageOffset":349344,"imageIndex":69},{"imageOffset":349160,"imageIndex":69},{"imageOffset":381256,"symbol":"_NSViewHierarchyDidChangeBackingProperties","symbolLocation":244,"imageIndex":223},{"imageOffset":12004300,"symbol":"-[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:]","symbolLocation":192,"imageIndex":223},{"imageOffset":2071804,"symbol":"__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke","symbolLocation":432,"imageIndex":223},{"imageOffset":507904,"symbol":"NSPerformVisuallyAtomicChange","symbolLocation":108,"imageIndex":223},{"imageOffset":2071360,"symbol":"-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]","symbolLocation":96,"imageIndex":223},{"imageOffset":3366752,"symbol":"-[NSWindow _screenChanged:]","symbolLocation":136,"imageIndex":223},{"imageOffset":3366584,"symbol":"-[NSWindow _displayChangedSoAdjustWindows:]","symbolLocation":112,"imageIndex":223},{"imageOffset":15453360,"symbol":"___NSApplicationPerformScreenInvalidationReactions_block_invoke","symbolLocation":84,"imageIndex":223},{"imageOffset":219016,"symbol":"-[NSApplication enumerateWindowsWithOptions:usingBlock:]","symbolLocation":236,"imageIndex":223},{"imageOffset":15451568,"symbol":"___NSApplicationReactToScreenInvalidation_block_invoke","symbolLocation":1012,"imageIndex":223},{"imageOffset":15449584,"symbol":"_NSApplicationReactToScreenInvalidation","symbolLocation":308,"imageIndex":223},{"imageOffset":15450172,"symbol":"-[NSApplication(ScreenHandling) _reactToDisplayChanges:]","symbolLocation":416,"imageIndex":223},{"imageOffset":9874348,"symbol":"_NSCGSDisplayConfigurationUpdateAndInvokeObservers","symbolLocation":436,"imageIndex":223},{"imageOffset":9875600,"symbol":"_NSCGSDisplayConfigurationDidReconfigureNotificationHandler","symbolLocation":316,"imageIndex":223},{"imageOffset":45104,"symbol":"(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)","symbolLocation":920,"imageIndex":224},{"imageOffset":4298612,"symbol":"CGSDatagramReadStream::dispatchMainQueueDatagrams()","symbolLocation":284,"imageIndex":224},{"imageOffset":4298296,"symbol":"invocation function for block in CGSDatagramReadStream::mainQueueWakeup()","symbolLocation":28,"imageIndex":224},{"imageOffset":6956,"symbol":"_dispatch_call_block_and_release","symbolLocation":32,"imageIndex":225},{"imageOffset":112732,"symbol":"_dispatch_client_callout","symbolLocation":16,"imageIndex":225},{"imageOffset":232320,"symbol":"_dispatch_main_queue_drain.cold.5","symbolLocation":812,"imageIndex":225},{"imageOffset":69040,"symbol":"_dispatch_main_queue_drain","symbolLocation":180,"imageIndex":225},{"imageOffset":68844,"symbol":"_dispatch_main_queue_callback_4CF","symbolLocation":44,"imageIndex":225},{"imageOffset":764896,"symbol":"__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__","symbolLocation":16,"imageIndex":226},{"imageOffset":506076,"symbol":"__CFRunLoopRun","symbolLocation":1980,"imageIndex":226},{"imageOffset":502424,"symbol":"CFRunLoopRunSpecific","symbolLocation":572,"imageIndex":226},{"imageOffset":799356,"symbol":"RunCurrentEventLoopInMode","symbolLocation":324,"imageIndex":227},{"imageOffset":812264,"symbol":"ReceiveNextEventCommon","symbolLocation":676,"imageIndex":227},{"imageOffset":2430084,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":76,"imageIndex":227},{"imageOffset":240180,"symbol":"_DPSNextEvent","symbolLocation":684,"imageIndex":223},{"imageOffset":10328384,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":688,"imageIndex":223},{"imageOffset":187364,"symbol":"-[NSApplication run]","symbolLocation":480,"imageIndex":223},{"imageOffset":88376,"imageIndex":69},{"imageOffset":572692,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":540,"imageIndex":45},{"imageOffset":534620,"symbol":"QCoreApplication::exec()","symbolLocation":112,"imageIndex":45},{"imageOffset":2477972,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":48},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":1},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":1},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":1},{"imageOffset":1729512,"symbol":"PyEval_EvalCode","symbolLocation":276,"imageIndex":1},{"imageOffset":1707120,"symbol":"builtin_exec","symbolLocation":428,"imageIndex":1},{"imageOffset":1007044,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":80,"imageIndex":1},{"imageOffset":1788292,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54032,"imageIndex":1},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":1},{"imageOffset":2389028,"symbol":"pymain_run_module","symbolLocation":256,"imageIndex":1},{"imageOffset":2387652,"symbol":"Py_RunMain","symbolLocation":1784,"imageIndex":1},{"imageOffset":2392180,"symbol":"pymain_main","symbolLocation":52,"imageIndex":1},{"imageOffset":2392116,"symbol":"Py_Main","symbolLocation":36,"imageIndex":1},{"imageOffset":15700,"symbol":"main","symbolLocation":128,"imageIndex":0},{"imageOffset":27544,"symbol":"start","symbolLocation":6076,"imageIndex":228}]},{"id":11721366,"name":"ThreadPoolServiceThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553174947392},{"value":4},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":3},{"value":896101976846082},{"value":6057286224},{"value":38403},{"value":1},{"value":1},{"value":369},{"value":6169915392},{"value":0},{"value":5766517696},{"value":5689499568},{"value":6169914704},{"value":0},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5947046824},"cpsr":{"value":2684358656},"fp":{"value":6169914688},"sp":{"value":6169914592},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924704092},"far":{"value":0}},"frames":[{"imageOffset":51548,"symbol":"kevent64","symbolLocation":8,"imageIndex":219},{"imageOffset":71187368,"imageIndex":56},{"imageOffset":71186848,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70856668,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721367,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":163840117440512},{"value":0},{"value":163840117440512},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":38147},{"value":2043},{"value":18446744073709551569},{"value":8787113568},{"value":0},{"value":0},{"value":32},{"value":163840117440512},{"value":0},{"value":163840117440512},{"value":6178336048},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6178335392},"sp":{"value":6178335312},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70904380,"imageIndex":56},{"imageOffset":70902644,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721368,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":161641094184960},{"value":0},{"value":161641094184960},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":37635},{"value":2043},{"value":18446744073709551569},{"value":8787113568},{"value":0},{"value":0},{"value":32},{"value":161641094184960},{"value":0},{"value":161641094184960},{"value":6186757424},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6186756768},"sp":{"value":6186756688},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70904380,"imageIndex":56},{"imageOffset":70902696,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721369,"name":"Chrome_IOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":14786801824},{"value":5},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":9223372036854775809},{"value":6057286272},{"value":64771},{"value":1},{"value":1},{"value":369},{"value":6195179520},{"value":0},{"value":5766509120},{"value":5714484096},{"value":6195178816},{"value":0},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5947046824},"cpsr":{"value":1610616832},"fp":{"value":6195178800},"sp":{"value":6195178704},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924704092},"far":{"value":0}},"frames":[{"imageOffset":51548,"symbol":"kevent64","symbolLocation":8,"imageIndex":219},{"imageOffset":71187368,"imageIndex":56},{"imageOffset":71186848,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":45328188,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721370,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":192427419762688},{"value":0},{"value":192427419762688},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":44803},{"value":1},{"value":18446744073709551569},{"value":6203600896},{"value":0},{"value":0},{"value":32},{"value":192427419762688},{"value":0},{"value":192427419762688},{"value":6203599936},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6203599280},"sp":{"value":6203599200},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70677152,"imageIndex":56},{"imageOffset":70343492,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721371,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":193544111259648},{"value":0},{"value":193544111259648},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":45063},{"value":3185789118},{"value":18446744073709551569},{"value":193},{"value":0},{"value":0},{"value":32},{"value":193544111259648},{"value":0},{"value":193544111259648},{"value":6212021552},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6212020896},"sp":{"value":6212020816},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70904380,"imageIndex":56},{"imageOffset":70902644,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721372,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":194626443018240},{"value":0},{"value":194626443018240},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":45315},{"value":4010074156},{"value":18446744073709551569},{"value":249},{"value":0},{"value":0},{"value":32},{"value":194626443018240},{"value":0},{"value":194626443018240},{"value":6220442928},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6220442272},"sp":{"value":6220442192},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70904380,"imageIndex":56},{"imageOffset":70902644,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721373,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":201223512784896},{"value":0},{"value":201223512784896},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":46851},{"value":2043},{"value":18446744073709551569},{"value":8787113568},{"value":0},{"value":0},{"value":32},{"value":201223512784896},{"value":0},{"value":201223512784896},{"value":6228864304},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6228863648},"sp":{"value":6228863568},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70904380,"imageIndex":56},{"imageOffset":70902644,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721374,"name":"Chrome_InProcGpuThread","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":205621559296000},{"value":0},{"value":205621559296000},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":47875},{"value":1},{"value":18446744073709551569},{"value":6237286400},{"value":0},{"value":0},{"value":32},{"value":205621559296000},{"value":0},{"value":205621559296000},{"value":6237285440},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6237284784},"sp":{"value":6237284704},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70677152,"imageIndex":56},{"imageOffset":70343492,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721375,"name":"Chrome_ChildIOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553129408144},{"value":1},{"value":0},{"value":0},{"value":6245705440},{"value":0},{"value":0},{"value":1},{"value":896101976846082},{"value":6057286368},{"value":61955},{"value":1},{"value":1},{"value":369},{"value":6245707776},{"value":0},{"value":5766522496},{"value":5741232400},{"value":6245707072},{"value":0},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5947046824},"cpsr":{"value":2684358656},"fp":{"value":6245707056},"sp":{"value":6245706960},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924704092},"far":{"value":0}},"frames":[{"imageOffset":51548,"symbol":"kevent64","symbolLocation":8,"imageIndex":219},{"imageOffset":71187368,"imageIndex":56},{"imageOffset":71186848,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":114048632,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721376,"name":"CompositorTileWorker1","threadState":{"x":[{"value":260},{"value":0},{"value":1792},{"value":0},{"value":0},{"value":161},{"value":0},{"value":0},{"value":6254128712},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":5745881768},{"value":5745881896},{"value":6254129376},{"value":0},{"value":0},{"value":1792},{"value":1793},{"value":2048},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":6254128832},"sp":{"value":6254128688},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}},"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":71055056,"imageIndex":56},{"imageOffset":104344336,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721377,"name":"ThreadPoolSingleThreadSharedForeground0","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":260631500423168},{"value":0},{"value":260631500423168},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":60683},{"value":2594613353},{"value":18446744073709551569},{"value":106},{"value":0},{"value":0},{"value":32},{"value":260631500423168},{"value":0},{"value":260631500423168},{"value":6262549808},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6262549152},"sp":{"value":6262549072},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70903324,"imageIndex":56},{"imageOffset":70902728,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721378,"name":"VizCompositorThread","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":252900559290368},{"value":0},{"value":252900559290368},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":58883},{"value":1},{"value":18446744073709551569},{"value":6270971904},{"value":0},{"value":0},{"value":32},{"value":252900559290368},{"value":0},{"value":252900559290368},{"value":6270970944},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6270970288},"sp":{"value":6270970208},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70677152,"imageIndex":56},{"imageOffset":70343492,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721379,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":248502512779264},{"value":0},{"value":248502512779264},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":57859},{"value":1},{"value":18446744073709551569},{"value":6279393280},{"value":0},{"value":0},{"value":32},{"value":248502512779264},{"value":0},{"value":248502512779264},{"value":6279392320},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6279391664},"sp":{"value":6279391584},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70677152,"imageIndex":56},{"imageOffset":70343492,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721382,"name":"NetworkService","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553156133088},{"value":2},{"value":0},{"value":0},{"value":6287812368},{"value":0},{"value":0},{"value":2},{"value":896101976846082},{"value":6057286560},{"value":52227},{"value":1},{"value":1},{"value":369},{"value":6287814656},{"value":0},{"value":5766915360},{"value":5741301040},{"value":6287814000},{"value":0},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5947046824},"cpsr":{"value":2684358656},"fp":{"value":6287813984},"sp":{"value":6287813888},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924704092},"far":{"value":0}},"frames":[{"imageOffset":51548,"symbol":"kevent64","symbolLocation":8,"imageIndex":219},{"imageOffset":71187368,"imageIndex":56},{"imageOffset":71186848,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721383,"name":"NetworkNotificationThreadMac","threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":243004954640384},{"value":0},{"value":243004954640384},{"value":2},{"value":4294967295},{"value":0},{"value":17179869184},{"value":0},{"value":2},{"value":0},{"value":0},{"value":56579},{"value":0},{"value":18446744073709551569},{"value":8787106920},{"value":0},{"value":4294967295},{"value":2},{"value":243004954640384},{"value":0},{"value":243004954640384},{"value":6296231400},{"value":8589934592},{"value":21592279046},{"value":18446744073709550527},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6296231248},"sp":{"value":6296231168},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":511164,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":160,"imageIndex":226},{"imageOffset":505304,"symbol":"__CFRunLoopRun","symbolLocation":1208,"imageIndex":226},{"imageOffset":502424,"symbol":"CFRunLoopRunSpecific","symbolLocation":572,"imageIndex":226},{"imageOffset":367736,"symbol":"-[NSRunLoop(NSRunLoop) runMode:beforeDate:]","symbolLocation":212,"imageIndex":230},{"imageOffset":71382916,"imageIndex":56},{"imageOffset":71377136,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721384,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":232009838362624},{"value":0},{"value":232009838362624},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":54019},{"value":1},{"value":18446744073709551569},{"value":6304657408},{"value":0},{"value":0},{"value":32},{"value":232009838362624},{"value":0},{"value":232009838362624},{"value":6304656448},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6304655792},"sp":{"value":6304655712},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70677152,"imageIndex":56},{"imageOffset":70343492,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721385,"name":"ThreadPoolSingleThreadForegroundBlocking1","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":281487861612544},{"value":0},{"value":281487861612544},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":65539},{"value":3515359335},{"value":18446744073709551569},{"value":4801553408},{"value":0},{"value":0},{"value":32},{"value":281487861612544},{"value":0},{"value":281487861612544},{"value":6313078064},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6313077408},"sp":{"value":6313077328},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70904380,"imageIndex":56},{"imageOffset":70902712,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721419,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":314473210445824},{"value":0},{"value":314473210445824},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":73219},{"value":1},{"value":18446744073709551569},{"value":6344224768},{"value":0},{"value":0},{"value":32},{"value":314473210445824},{"value":0},{"value":314473210445824},{"value":6344223808},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":6344223152},"sp":{"value":6344223072},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70677152,"imageIndex":56},{"imageOffset":70343492,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721437,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":413446436814848},{"value":0},{"value":413446436814848},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":96263},{"value":2152298812},{"value":18446744073709551569},{"value":4808460288},{"value":0},{"value":0},{"value":32},{"value":413446436814848},{"value":0},{"value":413446436814848},{"value":12955970864},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":12955970208},"sp":{"value":12955970128},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70903324,"imageIndex":56},{"imageOffset":70902696,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721442,"name":"com.apple.NSEventThread","threadState":{"x":[{"value":268451845},{"value":17183031299},{"value":103079220499},{"value":473936756229379},{"value":125915556216832},{"value":473936756211712},{"value":64},{"value":0},{"value":0},{"value":17179869184},{"value":64},{"value":0},{"value":29317},{"value":0},{"value":110347},{"value":0},{"value":18446744073709551569},{"value":8787106920},{"value":0},{"value":0},{"value":64},{"value":473936756211712},{"value":125915556216832},{"value":473936756229379},{"value":12996792080},{"value":103079220499},{"value":17183031299},{"value":18446744073709550527},{"value":3162115}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":536875008},"fp":{"value":12996791600},"sp":{"value":12996791520},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":38996,"symbol":"CGSSnarfAndDispatchDatagrams","symbolLocation":160,"imageIndex":224},{"imageOffset":4277660,"symbol":"SLSGetNextEventRecordInternal","symbolLocation":296,"imageIndex":224},{"imageOffset":1533840,"symbol":"SLEventCreateNextEvent","symbolLocation":20,"imageIndex":224},{"imageOffset":778056,"symbol":"PullEventsFromWindowServerOnConnection(unsigned int, unsigned char, __CFMachPortBoost*)","symbolLocation":64,"imageIndex":227},{"imageOffset":766612,"symbol":"MessageHandler(__CFMachPort*, void*, long, void*)","symbolLocation":60,"imageIndex":227},{"imageOffset":692416,"symbol":"__CFMachPortPerform","symbolLocation":240,"imageIndex":226},{"imageOffset":512144,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE1_PERFORM_FUNCTION__","symbolLocation":60,"imageIndex":226},{"imageOffset":511928,"symbol":"__CFRunLoopDoSource1","symbolLocation":508,"imageIndex":226},{"imageOffset":506296,"symbol":"__CFRunLoopRun","symbolLocation":2200,"imageIndex":226},{"imageOffset":502424,"symbol":"CFRunLoopRunSpecific","symbolLocation":572,"imageIndex":226},{"imageOffset":1435532,"symbol":"_NSEventThread","symbolLocation":140,"imageIndex":223},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721444,"name":"MemoryInfra","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":442016559267840},{"value":0},{"value":442016559267840},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":102915},{"value":1},{"value":18446744073709551569},{"value":12916486144},{"value":0},{"value":0},{"value":32},{"value":442016559267840},{"value":0},{"value":442016559267840},{"value":12916485184},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":12916484528},"sp":{"value":12916484448},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70677152,"imageIndex":56},{"imageOffset":70343492,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721445,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":443116070895616},{"value":0},{"value":443116070895616},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":103171},{"value":2466636061},{"value":18446744073709551569},{"value":287},{"value":0},{"value":0},{"value":32},{"value":443116070895616},{"value":0},{"value":443116070895616},{"value":12924906800},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":12924906144},"sp":{"value":12924906064},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70903324,"imageIndex":56},{"imageOffset":70902760,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":11721449,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":459608745312256},{"value":0},{"value":459608745312256},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":107011},{"value":2043},{"value":18446744073709551569},{"value":8787113568},{"value":0},{"value":0},{"value":32},{"value":459608745312256},{"value":0},{"value":459608745312256},{"value":12969766192},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":12969765536},"sp":{"value":12969765456},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70900888,"imageIndex":56},{"imageOffset":70904380,"imageIndex":56},{"imageOffset":70902644,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":12396883,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":405973193719808},{"value":0},{"value":405973193719808},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":94523},{"value":1},{"value":18446744073709551569},{"value":14100508672},{"value":0},{"value":0},{"value":32},{"value":405973193719808},{"value":0},{"value":405973193719808},{"value":14100507712},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924731296},"cpsr":{"value":4096},"fp":{"value":14100507056},"sp":{"value":14100506976},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924655668},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":219},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":219},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":219},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":219},{"imageOffset":71161832,"imageIndex":56},{"imageOffset":70677284,"imageIndex":56},{"imageOffset":70677152,"imageIndex":56},{"imageOffset":70343492,"imageIndex":56},{"imageOffset":70809656,"imageIndex":56},{"imageOffset":70544784,"imageIndex":56},{"imageOffset":70952276,"imageIndex":56},{"imageOffset":70952656,"imageIndex":56},{"imageOffset":71057880,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":12567365,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}],"threadState":{"x":[{"value":260},{"value":0},{"value":68608},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6315863752},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":4719042576,"symbolLocation":16,"symbol":"thread_status"},{"value":4719042640,"symbolLocation":80,"symbol":"thread_status"},{"value":6315864288},{"value":0},{"value":0},{"value":68608},{"value":68609},{"value":68864},{"value":4718956544,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":6315863872},"sp":{"value":6315863728},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}}},{"id":12567366,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}],"threadState":{"x":[{"value":260},{"value":0},{"value":69120},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6425276104},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":4719042704,"symbolLocation":144,"symbol":"thread_status"},{"value":4719042768,"symbolLocation":208,"symbol":"thread_status"},{"value":6425276640},{"value":0},{"value":0},{"value":69120},{"value":69121},{"value":69376},{"value":4718956544,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":6425276224},"sp":{"value":6425276080},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}}},{"id":12567367,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6428946120},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":4719042832,"symbolLocation":272,"symbol":"thread_status"},{"value":4719042896,"symbolLocation":336,"symbol":"thread_status"},{"value":6428946656},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4718956544,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":6428946240},"sp":{"value":6428946096},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}}},{"id":12567368,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6431010504},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":4719042960,"symbolLocation":400,"symbol":"thread_status"},{"value":4719043024,"symbolLocation":464,"symbol":"thread_status"},{"value":6431011040},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4718956544,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":6431010624},"sp":{"value":6431010480},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}}},{"id":12567369,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12944043720},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":4719043088,"symbolLocation":528,"symbol":"thread_status"},{"value":4719043152,"symbolLocation":592,"symbol":"thread_status"},{"value":12944044256},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4718956544,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":12944043840},"sp":{"value":12944043696},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}}},{"id":12567370,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12974599880},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":4719043216,"symbolLocation":656,"symbol":"thread_status"},{"value":4719043280,"symbolLocation":720,"symbol":"thread_status"},{"value":12974600416},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4718956544,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":12974600000},"sp":{"value":12974599856},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}}},{"id":12567371,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13005369032},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":4719043344,"symbolLocation":784,"symbol":"thread_status"},{"value":4719043408,"symbolLocation":848,"symbol":"thread_status"},{"value":13005369568},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4718956544,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":13005369152},"sp":{"value":13005369008},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}}},{"id":12708582,"name":"QFileInfoGatherer","threadState":{"x":[{"value":260},{"value":0},{"value":3072},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13019671944},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8787105040},{"value":0},{"value":105553364658176},{"value":105553364658240},{"value":13019672800},{"value":0},{"value":0},{"value":3072},{"value":3073},{"value":3328},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6924927200},"cpsr":{"value":1610616832},"fp":{"value":13019672064},"sp":{"value":13019671920},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924669900},"far":{"value":0}},"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":219},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":220},{"imageOffset":2118012,"imageIndex":45},{"imageOffset":2117824,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":4264588,"symbol":"QFileInfoGatherer::run()","symbolLocation":136,"imageIndex":50},{"imageOffset":2063036,"imageIndex":45},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":220},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":220}]},{"id":12976870,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":220}],"threadState":{"x":[{"value":6422032384},{"value":256919},{"value":6421495808},{"value":0},{"value":409602},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6422032384},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924905324},"far":{"value":0}}},{"id":12977910,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":220}],"threadState":{"x":[{"value":6434304000},{"value":91691},{"value":6433767424},{"value":0},{"value":409602},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6434304000},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924905324},"far":{"value":0}}},{"id":12977911,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":220}],"threadState":{"x":[{"value":12945043456},{"value":93987},{"value":12944506880},{"value":12945042304},{"value":5193730},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":12945042288},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6924905324},"far":{"value":0}}},{"id":12977912,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":220}],"threadState":{"x":[{"value":12973305856},{"value":0},{"value":12972769280},{"value":0},{"value":278532},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":12973305856},"esr":{"value":0,"description":" Address size fault"},"pc":{"value":6924905324},"far":{"value":0}}},{"id":12977913,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":220}],"threadState":{"x":[{"value":6437171200},{"value":0},{"value":6436634624},{"value":0},{"value":278532},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6437171200},"esr":{"value":0,"description":" Address size fault"},"pc":{"value":6924905324},"far":{"value":0}}}],
"usedImages" : [
{
"source" : "P",
"arch" : "arm64",
"base" : 4311678976,
"CFBundleShortVersionString" : "1.9.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "17982d98-65bc-3327-8526-577ec996453c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.9.0.0"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4329144320,
"CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 3948544,
"uuid" : "88bffd37-99d8-36ab-9b95-9f54b30bd667",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.4"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4314923008,
"size" : 49152,
"uuid" : "51d31d0d-1dcc-31ad-b6c1-73d57e544a3a",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4314234880,
"size" : 81920,
"uuid" : "3b2e1e73-f5e1-3fa3-80b3-e46009060893",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4314415104,
"size" : 16384,
"uuid" : "39aa96c6-b691-3e20-9540-292b9dd1c861",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318429184,
"size" : 32768,
"uuid" : "65172ede-2b95-337d-970f-ed6c4a217cb1",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318543872,
"size" : 16384,
"uuid" : "dc7a591b-ef8a-3b77-9396-ecee27303fdb",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4319215616,
"size" : 196608,
"uuid" : "a4b86716-73ef-3046-b7ee-1d069dfd7cd0",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318625792,
"size" : 16384,
"uuid" : "a97f3cfd-a5a7-3ce2-9eb6-5ebc0943bd1d",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318707712,
"size" : 16384,
"uuid" : "1eab426b-5d06-3a22-b7b5-6dbc112704d6",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318789632,
"size" : 16384,
"uuid" : "487467f0-5417-397f-8fb9-43ce116abec8",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318871552,
"size" : 32768,
"uuid" : "c4b2ad90-cc7d-3780-bee9-9f1dbc2aa560",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318969856,
"size" : 32768,
"uuid" : "167d8231-8346-37b6-9d67-149a1fe3df21",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4319084544,
"size" : 16384,
"uuid" : "9e9f3dfb-1383-3420-bfcf-d996842d8e9e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4319510528,
"size" : 16384,
"uuid" : "d685528c-5d21-3c1a-b720-81f8ba0b399a",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4319592448,
"size" : 32768,
"uuid" : "d25f2f2d-a87d-3870-ad6a-3d977d50c9ca",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4319690752,
"size" : 16384,
"uuid" : "af325f57-7a09-34ec-a4c1-5868641db36e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4324212736,
"size" : 458752,
"uuid" : "951d36fb-0a20-3aac-8b75-7821933bfa58",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4324851712,
"size" : 2670592,
"uuid" : "744b099b-9156-3efd-95ee-949f9bec068e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4697620480,
"size" : 21299200,
"uuid" : "9854a721-2573-3169-81ec-19ea40ce8077",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4347035648,
"size" : 3522560,
"uuid" : "dd0e012a-b6de-31b1-a28e-260c7b51e595",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4328177664,
"size" : 311296,
"uuid" : "6d39d54b-d80e-3218-a095-b81ad0b3be90",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318199808,
"size" : 65536,
"uuid" : "d9875303-8f38-33d9-a0d3-ab0adff3b915",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4319772672,
"size" : 98304,
"uuid" : "ad5b1457-a682-3233-ac84-0f75b349239d",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4318347264,
"size" : 16384,
"uuid" : "c1a0a0c0-1986-3338-a63d-eb396e783c91",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4319952896,
"size" : 65536,
"uuid" : "340d4f4e-8cd4-3e24-9215-eb9235031bd3",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4323672064,
"size" : 81920,
"uuid" : "6c214dd2-6044-3285-949b-8d8ba72ca17b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4323278848,
"size" : 98304,
"uuid" : "09f94631-f551-3559-ba88-aff49917d8fe",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4323459072,
"size" : 65536,
"uuid" : "7b5335ce-92a1-3ae2-bde0-0e5d5641b2c9",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4422549504,
"size" : 622592,
"uuid" : "05ddaab9-9d7f-3317-a3c4-5e9936fe3ceb",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4323868672,
"size" : 147456,
"uuid" : "377e255e-f9a4-3173-8265-a899000c5d0f",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4336484352,
"size" : 196608,
"uuid" : "8590d52a-d755-3ffd-8f68-f9cb638359fc",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4324098048,
"size" : 32768,
"uuid" : "322b4be7-35a8-331a-a549-7a0297d9dd70",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4754522112,
"size" : 1687552,
"uuid" : "59149ee6-b873-3c5d-8fed-d11966210295",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4328751104,
"size" : 32768,
"uuid" : "3206e248-2c9b-345c-98ac-8f9dfc6d639b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4346347520,
"size" : 311296,
"uuid" : "0033ea49-a161-3564-b09e-6a6c3b902698",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4328554496,
"size" : 65536,
"uuid" : "7dab4595-a351-3061-861b-c426baee85b3",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4336762880,
"size" : 65536,
"uuid" : "d3035eea-ed0e-398a-afbe-f9a8016701db",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4328849408,
"size" : 81920,
"uuid" : "35fb9307-f991-3159-86db-21f6c67b9198",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4329013248,
"size" : 49152,
"uuid" : "17a4344b-3221-36c4-9019-53cc1223e124",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4421025792,
"size" : 737280,
"uuid" : "49451e8a-e3c8-3429-83d8-249e81e378cd",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4323590144,
"size" : 16384,
"uuid" : "5973ec29-8c62-3285-97ee-5797aef28b1c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4346740736,
"size" : 114688,
"uuid" : "af1d1557-4982-31c1-ab8f-e757042d2b31",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4422074368,
"size" : 32768,
"uuid" : "0722922a-a378-3dee-b11b-96d1ae381b09",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4766449664,
"size" : 1769472,
"uuid" : "96b797fa-3120-323b-9d82-a251f6e48226",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4758945792,
"size" : 4603904,
"uuid" : "5e316915-192d-32ae-b085-7c0986279324",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4421877760,
"size" : 81920,
"uuid" : "039b5788-14d5-3758-a055-c3275cdca941",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 4764434432,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 131072,
"uuid" : "3a905673-ada9-3c57-992e-b83f555baa61",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61439.140.12"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5457051648,
"size" : 3080192,
"uuid" : "ac9bb37f-d5ad-31aa-8307-d081879d1aef",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5444632576,
"size" : 4620288,
"uuid" : "6b195f36-d220-34c8-afd3-7caa96572118",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5479940096,
"size" : 6635520,
"uuid" : "3efe39e7-026f-3417-94b4-be4f2ec95e51",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4770234368,
"size" : 524288,
"uuid" : "d5cb7913-29ba-3362-8f22-91b25e5f4250",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4793040896,
"size" : 1572864,
"uuid" : "2d40a77e-ea0d-33d8-8ddb-9615990e83a8",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4766072832,
"size" : 65536,
"uuid" : "f9ba94a8-7757-3733-870c-e667c5a1eac6",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4765728768,
"size" : 98304,
"uuid" : "9a009330-7967-389a-9d24-401c184a66b8",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4796366848,
"size" : 278528,
"uuid" : "22cc3ad5-b1ab-349a-aab1-007383dfd9e1",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5875859456,
"size" : 173883392,
"uuid" : "309d9313-74e8-3f16-8acc-0f13b36d8e00",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5487853568,
"size" : 4063232,
"uuid" : "6b8269f9-29eb-32c3-b658-8981c8718100",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5451776000,
"size" : 409600,
"uuid" : "47c5e5aa-3706-361b-8fc9-63a272e0f6ec",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5456199680,
"size" : 540672,
"uuid" : "4b1fc39b-ed97-3be9-8399-c5e13b22612d",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4796841984,
"size" : 163840,
"uuid" : "2a9f4886-f5c7-3296-b65b-c4fdba19ccdc",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5473173504,
"size" : 3784704,
"uuid" : "1fbd4770-8846-37d4-983b-fad2a999afea",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5466685440,
"size" : 1196032,
"uuid" : "c733a080-e019-3fcd-8938-ba01bb37c481",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5463375872,
"size" : 442368,
"uuid" : "da5588b2-40af-38bc-911f-17891298ddbf",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4766236672,
"size" : 81920,
"uuid" : "5307f882-fbe3-3ab9-8a5d-b5c5f2c24784",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5454692352,
"size" : 507904,
"uuid" : "f816cdd7-ea60-3006-b798-7a4807a11088",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5463982080,
"size" : 163840,
"uuid" : "095c1d58-dfc9-30a4-87af-1eff15158ef2",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4425793536,
"size" : 32768,
"uuid" : "a6f65afe-0ffb-3b51-9a3f-4970263023c3",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5468291072,
"size" : 245760,
"uuid" : "a2e04b1b-3dff-365f-b33a-bc4e51cd97e8",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5465292800,
"size" : 655360,
"uuid" : "fab03cd7-ccd1-33ab-bc97-91ce7e4911a2",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5466488832,
"size" : 49152,
"uuid" : "a3faee04-0f8b-3428-9497-560c97eca6fb",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5471928320,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer",
"size" : 425984,
"uuid" : "28cfca54-b985-318a-a54a-7709dcd5f39e",
"path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer",
"name" : "AppleMetalOpenGLRenderer",
"CFBundleVersion" : "1"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5689573376,
"CFBundleShortVersionString" : "329.2",
"CFBundleIdentifier" : "com.apple.AGXMetalG14G",
"size" : 7372800,
"uuid" : "c2fc7d19-d3e9-3a99-932a-adbf6ba1e4f2",
"path" : "\/System\/Library\/Extensions\/AGXMetalG14G.bundle\/Contents\/MacOS\/AGXMetalG14G",
"name" : "AGXMetalG14G",
"CFBundleVersion" : "329.2"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5472813056,
"size" : 147456,
"uuid" : "f4a72a04-0d1a-3821-9bf6-2c55ef9c6f62",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5473075200,
"size" : 16384,
"uuid" : "157e3710-caca-35b5-9fda-d1c4efc75429",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5478088704,
"size" : 65536,
"uuid" : "ff7c6b72-2303-3d40-a4fa-f3d840425be2",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5478236160,
"size" : 49152,
"uuid" : "0895ead1-fff8-3401-9c5c-5c4254ce969b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5477793792,
"size" : 98304,
"uuid" : "5c15959b-b36d-32f8-80b0-b0558dbb9fcc",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5687803904,
"size" : 344064,
"uuid" : "edcc52bf-058b-3550-8a40-7e432a5ee6bb",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5478645760,
"size" : 49152,
"uuid" : "651053b2-7ecc-3ea1-9b86-d9e6abfd212c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_asyncio.cpython-311-darwin.so",
"name" : "_asyncio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5478547456,
"size" : 16384,
"uuid" : "d1ab66f9-4e1b-33ed-9f42-c0b8da85176d",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5704744960,
"size" : 1114112,
"uuid" : "53b26948-66e6-3561-982a-bf81ea781c85",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5478367232,
"size" : 32768,
"uuid" : "84cdb79d-2ae7-34a7-b16e-9fb329a85f3b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5479858176,
"size" : 16384,
"uuid" : "c1972023-5d8e-34f3-86d6-1ff9eb40e53c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5704155136,
"size" : 180224,
"uuid" : "61648853-65ec-36d8-b740-28ff2b9a73bd",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5703204864,
"size" : 425984,
"uuid" : "7d78f51d-a55e-3e6f-9176-00bfae4106a0",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5682921472,
"size" : 98304,
"uuid" : "12f930bf-d331-3ae7-88cb-fbf14c2f66f7",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5668405248,
"size" : 49152,
"uuid" : "fbc563dc-cb14-3b04-bd2d-071509b4cbb0",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5522735104,
"size" : 16384,
"uuid" : "c744335a-61a0-3429-9788-36011a780828",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5683167232,
"size" : 32768,
"uuid" : "4880efb8-6354-3012-9b92-a07d26209492",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5712216064,
"size" : 409600,
"uuid" : "32de1d9a-e106-35cd-88a8-1cef9e0dbcd6",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5703876608,
"size" : 147456,
"uuid" : "9540919f-e960-3dd7-a464-8e3be0a0f8e0",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5687672832,
"size" : 16384,
"uuid" : "cd5f3f7c-54a3-322d-a180-6c7b94deed82",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5702074368,
"size" : 16384,
"uuid" : "b3287e1f-ce2c-3c6f-bc12-deb15c14593c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5688360960,
"size" : 32768,
"uuid" : "d197680c-26b9-3292-85bc-f61af0ff34bb",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5704597504,
"size" : 16384,
"uuid" : "1033546a-393e-3cec-89ae-4ad3d9019e81",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5711757312,
"size" : 147456,
"uuid" : "97b6add7-b8ac-37d0-9675-bb372fc61e08",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5719228416,
"size" : 1114112,
"uuid" : "5200c6a0-ccdb-3607-9947-1defdd6fb647",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5712019456,
"size" : 32768,
"uuid" : "7503f11a-978c-3a80-b5da-ab207a441c5e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5712134144,
"size" : 16384,
"uuid" : "8eb0c267-c007-3e24-9604-1f0a78868795",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5720424448,
"size" : 262144,
"uuid" : "f2c706bd-a2c4-39ce-b4c0-048c01ea0eca",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5712822272,
"size" : 376832,
"uuid" : "449dd33a-e724-335b-9ef9-bf9b2730bf05",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5723684864,
"size" : 688128,
"uuid" : "d800b974-86b2-386e-be4e-8ac8e22fd3cd",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5724504064,
"size" : 540672,
"uuid" : "dbec2c14-6e39-3319-a2c0-3606ed70093e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5725159424,
"size" : 606208,
"uuid" : "78bac0b1-a0df-3e6e-b906-cbc961cdb354",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib",
"name" : "libopenjp2.2.5.2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5713379328,
"size" : 114688,
"uuid" : "6e171b67-e226-3c3e-bc7c-5bd522f28494",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib",
"name" : "libz.1.3.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5718933504,
"size" : 163840,
"uuid" : "8c16ecf4-eb91-3dbb-8543-fe43fcd625a5",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib",
"name" : "libxcb.1.1.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5722750976,
"size" : 262144,
"uuid" : "37441cb2-0945-3607-9e47-10990b396b4c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5713559552,
"size" : 16384,
"uuid" : "9ee33d4a-150e-3574-9258-2061bb970c27",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5722079232,
"size" : 16384,
"uuid" : "10cb0192-6e54-3232-ba83-11bac176e9df",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5720817664,
"size" : 81920,
"uuid" : "8fddd516-f019-3f18-a8d7-1e8f187c0b62",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5722161152,
"size" : 212992,
"uuid" : "3f83baa6-2f1a-3b75-82dd-124cf0b58e99",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5735809024,
"size" : 589824,
"uuid" : "9ac66732-0f4f-3bc5-933a-a81e408776fc",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5722505216,
"size" : 114688,
"uuid" : "cb98e849-be4f-3629-bb70-bd39127aa907",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5735301120,
"size" : 163840,
"uuid" : "78ab6dee-103a-31de-bb4e-ea5e9b694cb0",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5723095040,
"size" : 229376,
"uuid" : "74604ba2-d481-3430-97e0-f41fc690a918",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5723455488,
"size" : 49152,
"uuid" : "4c5d42bf-4e9d-3c59-bf2e-303deda3aeb2",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5749997568,
"size" : 196608,
"uuid" : "c4b0c9bc-a01b-3cf7-b16b-77f9b13b6cd9",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5749342208,
"size" : 229376,
"uuid" : "33919aef-b02e-386a-8f81-a661fe002ddc",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5735579648,
"size" : 65536,
"uuid" : "d9a192eb-4bf9-362f-99d4-f6bc1e368b01",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5737594880,
"size" : 49152,
"uuid" : "38eab131-624a-32cf-8d4e-374bca53e017",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5749735424,
"size" : 131072,
"uuid" : "3ef700f1-b0ef-333f-8291-6877887bedaa",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5723586560,
"size" : 32768,
"uuid" : "8d31db78-2ab7-3822-aba7-563348c79c50",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5805916160,
"size" : 32768,
"uuid" : "22c65698-3eb0-39bd-8bf5-5aaadf3bd9f2",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5807243264,
"size" : 442368,
"uuid" : "7c98e1e6-dd90-36a2-bfd3-a3103c39fd9b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5806014464,
"size" : 32768,
"uuid" : "a9183dd9-e1b4-3965-9435-807451ca1b18",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5806112768,
"size" : 32768,
"uuid" : "c83b2c9f-0456-339b-831c-a6b5ce376d0e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5806211072,
"size" : 425984,
"uuid" : "3a31c2cb-a63c-3143-ab9a-2a656704ea01",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5806718976,
"size" : 393216,
"uuid" : "c9dba68f-5403-31e3-8f56-810ebbe9e9e9",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5807767552,
"size" : 32768,
"uuid" : "7f110607-7426-3513-90c8-2dba39d2af55",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5808881664,
"size" : 311296,
"uuid" : "02114ea2-50c1-37b9-93ed-521c1a24dfce",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5807865856,
"size" : 32768,
"uuid" : "1046822e-ff07-35c9-b66d-f77cd27ce910",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5828689920,
"size" : 8175616,
"uuid" : "40798962-c2d9-31a8-9401-e18da232af20",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5805703168,
"size" : 32768,
"uuid" : "21777c49-4a6a-3e5b-8525-85f4d3d90644",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5805801472,
"size" : 32768,
"uuid" : "04182ebf-3ae6-32e2-a430-a1fcac4f4bfd",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5808177152,
"size" : 32768,
"uuid" : "8659aa4e-a5dd-30ef-9dcb-66fb8dff410e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5737725952,
"size" : 16384,
"uuid" : "f32b33dd-7a90-33ee-8137-4f8d18ea925d",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5810290688,
"size" : 49152,
"uuid" : "94921430-81c9-39ce-b5ef-78d1a90b407d",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/iconengines\/libqsvgicon.dylib",
"name" : "libqsvgicon.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6084214784,
"size" : 81920,
"uuid" : "703104dc-b212-3b8d-9c78-4f57b3c9cb18",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6084411392,
"size" : 49152,
"uuid" : "12c53516-421d-3f7a-a81e-95bcfdb8a3ff",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6380535808,
"size" : 147456,
"uuid" : "1e310bc7-5f96-396b-816d-5b40a3dde12c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6380273664,
"size" : 81920,
"uuid" : "3133c77c-8bf7-32a3-b5db-cbfe2e50ce9d",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6380109824,
"size" : 16384,
"uuid" : "de871a78-14f2-3e72-9bde-e4f2c7493f1b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6386843648,
"size" : 475136,
"uuid" : "0c6e9a11-e483-3d7d-a88f-8ad0507af167",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6390169600,
"size" : 409600,
"uuid" : "1ab8e5e2-c699-3efb-8f77-d375e3793c8f",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6160285696,
"size" : 16384,
"uuid" : "644b1794-90c5-3838-9ffa-b772683aeb37",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_sw.cpython-311-darwin.so",
"name" : "_sw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6313115648,
"size" : 16384,
"uuid" : "02f24514-9c56-3aa2-806f-b6eae4e7cf23",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib",
"name" : "libalign_algs.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6079807488,
"size" : 16384,
"uuid" : "4e700338-6839-3c7c-9f41-a201e7f185e5",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/dssp\/_dssp.cpython-311-darwin.so",
"name" : "_dssp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6382157824,
"size" : 32768,
"uuid" : "93fd54d8-5d5e-319d-94c5-2702d533d751",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so",
"name" : "_nw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6381879296,
"size" : 65536,
"uuid" : "75abfe7f-3ba2-3925-a30c-a66edd5a37d6",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/_lib\/_ccallback_c.cpython-311-darwin.so",
"name" : "_ccallback_c.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12957630464,
"size" : 311296,
"uuid" : "34fff075-3254-34ab-b9c3-b8cb5898064c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_fblas.cpython-311-darwin.so",
"name" : "_fblas.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14796619776,
"size" : 18235392,
"uuid" : "82c4aeb5-a0fd-3c26-8003-174ce35c0d5c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libscipy_openblas.dylib",
"name" : "libscipy_openblas.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13179076608,
"size" : 1376256,
"uuid" : "ae3c441b-de1b-3bb8-8c6e-1a2411185d0e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12958203904,
"size" : 262144,
"uuid" : "81355d03-a464-3826-b89b-106d33d94d39",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6383632384,
"size" : 65536,
"uuid" : "ad4f9635-aa1c-370d-a9a6-8889ebb4d94b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14672232448,
"size" : 999424,
"uuid" : "99959d1b-b04b-37d7-9078-c820764d4660",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_flapack.cpython-311-darwin.so",
"name" : "_flapack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13055131648,
"size" : 393216,
"uuid" : "636bf4b5-96b6-3ed3-a475-b74c2f141c30",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_cythonized_array_utils.cpython-311-darwin.so",
"name" : "_cythonized_array_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14362181632,
"size" : 458752,
"uuid" : "466469d5-3888-32a6-819b-9c638b1495af",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/cython_lapack.cpython-311-darwin.so",
"name" : "cython_lapack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6394150912,
"size" : 163840,
"uuid" : "4488255b-3335-3401-a789-1bb0ac5cc365",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_solve_toeplitz.cpython-311-darwin.so",
"name" : "_solve_toeplitz.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6389923840,
"size" : 147456,
"uuid" : "ee75273a-ce82-3e79-ac65-9d366bc618e2",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_decomp_lu_cython.cpython-311-darwin.so",
"name" : "_decomp_lu_cython.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12945162240,
"size" : 147456,
"uuid" : "a3e54b87-ab2a-3872-9028-85be7e7903a5",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_matfuncs_sqrtm_triu.cpython-311-darwin.so",
"name" : "_matfuncs_sqrtm_triu.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12973637632,
"size" : 311296,
"uuid" : "72901c80-2114-3c1e-8984-65b76be6fbe1",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_matfuncs_expm.cpython-311-darwin.so",
"name" : "_matfuncs_expm.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12971196416,
"size" : 180224,
"uuid" : "267cc487-e20f-3285-a167-8fadc676fd7c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/cython_blas.cpython-311-darwin.so",
"name" : "cython_blas.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12999311360,
"size" : 229376,
"uuid" : "93124d41-77bb-3df5-99d8-8718af7517f9",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_decomp_update.cpython-311-darwin.so",
"name" : "_decomp_update.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14668529664,
"size" : 2998272,
"uuid" : "93caf6d8-a722-3f1d-8b08-a862f44684b1",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/_sparsetools.cpython-311-darwin.so",
"name" : "_sparsetools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14674001920,
"size" : 475136,
"uuid" : "d1940dbb-4221-3dac-8659-2522b5434ac9",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/_csparsetools.cpython-311-darwin.so",
"name" : "_csparsetools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13004144640,
"size" : 229376,
"uuid" : "17268861-3468-3567-8fbf-c45a6d182930",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_dsolve\/_superlu.cpython-311-darwin.so",
"name" : "_superlu.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14660583424,
"size" : 360448,
"uuid" : "0421d992-75d0-39d6-a6a6-307a6eabcde8",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_eigen\/arpack\/_arpack.cpython-311-darwin.so",
"name" : "_arpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13016858624,
"size" : 81920,
"uuid" : "eaa2fb10-9526-337e-af65-de0646046561",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_spropack.cpython-311-darwin.so",
"name" : "_spropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13044105216,
"size" : 81920,
"uuid" : "14bcca76-87f1-3b9b-aeb0-ddb62cff66f8",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_dpropack.cpython-311-darwin.so",
"name" : "_dpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13015416832,
"size" : 98304,
"uuid" : "6092756a-fa93-3bba-b328-e87501f4c19f",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_cpropack.cpython-311-darwin.so",
"name" : "_cpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14674591744,
"size" : 81920,
"uuid" : "6dd1ac0c-1535-3af1-9cf8-7bb3facccbdf",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_zpropack.cpython-311-darwin.so",
"name" : "_zpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14676033536,
"size" : 360448,
"uuid" : "76abd194-9fc8-3443-bc10-c02874b4430f",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_shortest_path.cpython-311-darwin.so",
"name" : "_shortest_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13084868608,
"size" : 131072,
"uuid" : "6e7fb5a8-3cdb-327f-9725-a7d5a993f0ab",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_tools.cpython-311-darwin.so",
"name" : "_tools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14677573632,
"size" : 393216,
"uuid" : "f87d1f68-a0b7-3cad-be69-3990c8822c47",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_traversal.cpython-311-darwin.so",
"name" : "_traversal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13100482560,
"size" : 147456,
"uuid" : "dac8c785-7143-33d0-adbe-c34d9a15b8f5",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_min_spanning_tree.cpython-311-darwin.so",
"name" : "_min_spanning_tree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13127417856,
"size" : 196608,
"uuid" : "dfe8ede2-ef6f-3dfd-9c04-838e57fc4d34",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_flow.cpython-311-darwin.so",
"name" : "_flow.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13575192576,
"size" : 212992,
"uuid" : "ba48e1d2-1202-3107-9ee0-3400f96a9ee0",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_matching.cpython-311-darwin.so",
"name" : "_matching.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14055145472,
"size" : 196608,
"uuid" : "99c6fa24-9395-3a04-9480-19858856fb05",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_reordering.cpython-311-darwin.so",
"name" : "_reordering.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6382026752,
"size" : 49152,
"uuid" : "fc42f3ef-42b2-303c-a526-7030b7a716a0",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_group_columns.cpython-311-darwin.so",
"name" : "_group_columns.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14675116032,
"size" : 212992,
"uuid" : "df8d6336-b44f-39cb-bbc9-63af53130a50",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_trlib\/_trlib.cpython-311-darwin.so",
"name" : "_trlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12905594880,
"size" : 49152,
"uuid" : "50839c79-3ad4-384c-868a-ede8ab22645f",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/_lib\/messagestream.cpython-311-darwin.so",
"name" : "messagestream.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13004455936,
"size" : 81920,
"uuid" : "81c7b3c2-1b95-3712-963f-625f8236c02b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lbfgsb.cpython-311-darwin.so",
"name" : "_lbfgsb.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13186695168,
"size" : 98304,
"uuid" : "42cfbbd9-fc55-33b4-8da9-0eec06fc174c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_moduleTNC.cpython-311-darwin.so",
"name" : "_moduleTNC.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12974702592,
"size" : 65536,
"uuid" : "cd46994a-7e5e-3cf3-bf43-1d59ec973d4a",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_cobyla.cpython-311-darwin.so",
"name" : "_cobyla.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13033766912,
"size" : 65536,
"uuid" : "16317d40-13ed-38a0-92b5-5c8436cd4b85",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_slsqp.cpython-311-darwin.so",
"name" : "_slsqp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6379814912,
"size" : 49152,
"uuid" : "af39f3e9-ab3c-3453-ac22-649163e053f9",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_minpack.cpython-311-darwin.so",
"name" : "_minpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14676492288,
"size" : 131072,
"uuid" : "b96b7273-c279-318c-a3d8-c9de9a53d20d",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lsq\/givens_elimination.cpython-311-darwin.so",
"name" : "givens_elimination.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6379995136,
"size" : 16384,
"uuid" : "5d1b629d-7176-3a8f-9f61-22b4cd0d5dff",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_zeros.cpython-311-darwin.so",
"name" : "_zeros.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14682619904,
"size" : 2277376,
"uuid" : "7a727342-0c90-3571-a299-cff84978fd35",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_highs\/_highs_wrapper.cpython-311-darwin.so",
"name" : "_highs_wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12924993536,
"size" : 32768,
"uuid" : "3a7b4796-629b-3c8b-801f-3a7699ca3e71",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_highs\/_highs_constants.cpython-311-darwin.so",
"name" : "_highs_constants.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14676918272,
"size" : 294912,
"uuid" : "a0f6dde6-2963-373f-88a9-51589256c8a4",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_interpolative.cpython-311-darwin.so",
"name" : "_interpolative.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14686617600,
"size" : 212992,
"uuid" : "88852002-27e7-3ab2-b498-a67a98f41025",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_bglu_dense.cpython-311-darwin.so",
"name" : "_bglu_dense.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13016432640,
"size" : 32768,
"uuid" : "dbc21862-50df-387b-aa2c-967fbb76a6af",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lsap.cpython-311-darwin.so",
"name" : "_lsap.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14678065152,
"size" : 98304,
"uuid" : "1d5942d6-dbc1-3361-9e78-e2bc863318c6",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_pava_pybind.cpython-311-darwin.so",
"name" : "_pava_pybind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14679965696,
"size" : 540672,
"uuid" : "e1cdfb1d-5054-3d41-8e5f-3da202f63d7b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_ckdtree.cpython-311-darwin.so",
"name" : "_ckdtree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14778056704,
"size" : 770048,
"uuid" : "0e6a3399-6a6f-3ec3-ae61-81bfb33d183b",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_qhull.cpython-311-darwin.so",
"name" : "_qhull.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14678491136,
"size" : 131072,
"uuid" : "3febe891-f150-3e8a-89be-dcfc7eb50fe1",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_voronoi.cpython-311-darwin.so",
"name" : "_voronoi.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13182664704,
"size" : 81920,
"uuid" : "c0df5905-acc4-3e30-8273-a93ba14f1738",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_distance_wrap.cpython-311-darwin.so",
"name" : "_distance_wrap.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14682062848,
"size" : 131072,
"uuid" : "bcc13c1e-fb0b-3997-8606-38716d6d27bf",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_hausdorff.cpython-311-darwin.so",
"name" : "_hausdorff.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14781038592,
"size" : 802816,
"uuid" : "b022000b-cfb9-332f-8c69-0b86e44dcef4",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ufuncs.cpython-311-darwin.so",
"name" : "_ufuncs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6380208128,
"size" : 16384,
"uuid" : "5aa07cfb-914e-38bc-9e47-54882d97d620",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/libsf_error_state.dylib",
"name" : "libsf_error_state.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14778974208,
"size" : 884736,
"uuid" : "3138361d-7680-3f2c-9f0a-010f1094a543",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ufuncs_cxx.cpython-311-darwin.so",
"name" : "_ufuncs_cxx.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14775107584,
"size" : 524288,
"uuid" : "2f1b4b18-a1b2-33d4-a797-d83844dcf802",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_special_ufuncs.cpython-311-darwin.so",
"name" : "_special_ufuncs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14687567872,
"size" : 98304,
"uuid" : "5337aa3d-50d9-39a6-b22f-ea9c39a6776c",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_gufuncs.cpython-311-darwin.so",
"name" : "_gufuncs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14687191040,
"size" : 131072,
"uuid" : "44fab445-4a90-39f0-932e-98f1d5342229",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_specfun.cpython-311-darwin.so",
"name" : "_specfun.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13028032512,
"size" : 32768,
"uuid" : "09589b0b-38f8-372a-b5ff-185089c86fa5",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_comb.cpython-311-darwin.so",
"name" : "_comb.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14213513216,
"size" : 65536,
"uuid" : "04579fae-e25e-310b-9d9a-eb6567460a9a",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ellip_harm_2.cpython-311-darwin.so",
"name" : "_ellip_harm_2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14785363968,
"size" : 425984,
"uuid" : "790f202f-d1d8-3b1a-a2a4-6cedbfc5ae6f",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_distance_pybind.cpython-311-darwin.so",
"name" : "_distance_pybind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14784151552,
"size" : 638976,
"uuid" : "1054ddef-4190-3041-95be-e16119344536",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/transform\/_rotation.cpython-311-darwin.so",
"name" : "_rotation.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13085081600,
"size" : 32768,
"uuid" : "d08bc19e-a473-3d91-9401-19d68cabbac8",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_direct.cpython-311-darwin.so",
"name" : "_direct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5846024192,
"size" : 32768,
"uuid" : "8abbdcef-1901-3d4b-9e6b-a38214b79214",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13641318400,
"size" : 737280,
"uuid" : "cc06500d-d418-3365-b197-36b1304a819e",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6070632448,
"size" : 49152,
"uuid" : "b32a8c32-a5e0-3a8b-9a0d-00a26b160215",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6066782208,
"size" : 49152,
"uuid" : "cd4f396b-89fe-36fd-a488-6f5b3d4b0282",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6068830208,
"size" : 81920,
"uuid" : "d7bd530c-3353-37a6-b81f-ee3179d65811",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so",
"name" : "_version.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6069714944,
"size" : 180224,
"uuid" : "87eed069-25fc-30f6-aa30-1e54859d92e2",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6070173696,
"size" : 131072,
"uuid" : "c1a3c2d3-b21b-3231-839d-fcbc83ca2028",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so",
"name" : "_serialize.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6070779904,
"size" : 131072,
"uuid" : "650aead6-ce16-39bb-9ba1-4bf9986b96d6",
"path" : "\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so",
"name" : "_cmsgpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6924652544,
"size" : 243284,
"uuid" : "6e4a96ad-04b8-3e8a-b91d-087e62306246",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6924898304,
"size" : 51784,
"uuid" : "d6494ba9-171e-39fc-b1aa-28ecf87975d1",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6923419648,
"size" : 528964,
"uuid" : "dfea8794-80ce-37c3-8f6a-108aa1d0b1b0",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6925148160,
"size" : 32268,
"uuid" : "fd19a599-8750-31f9-924f-c2810c938371",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6991851520,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 21564992,
"uuid" : "860c164c-d04c-30ff-8c6f-e672b74caf11",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2575.70.52"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7025831936,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 5398624,
"uuid" : "4e052846-80c2-38af-85bf-1482e070a32b",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6923116544,
"size" : 288608,
"uuid" : "24ce0d89-4114-30c2-a81a-3db1f5931cff",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6925377536,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5500928,
"uuid" : "8d45baee-6cc0-3b89-93fd-ea1c8e15c6d7",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "3603"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7120781312,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3174368,
"uuid" : "1a037942-11e0-3fc8-aad2-20b11e7ae1a4",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6921093120,
"size" : 636280,
"uuid" : "3247e185-ced2-36ff-9e29-47a77c23e004",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6948384768,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.Foundation",
"size" : 14587296,
"uuid" : "b9a92060-f21e-3ecf-9ded-94a65c68a6f4",
"path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
"name" : "Foundation",
"CFBundleVersion" : "3603"
}
],
"sharedCache" : {
"base" : 6920257536,
"size" : 5040898048,
"uuid" : "032c7bce-a479-35b8-97bc-ce7f8f80ccab"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=2.0G resident=0K(0%) swapped_out_or_unallocated=2.0G(100%)\nWritable regions: Total=16.8G written=352.7M(2%) resident=7614K(0%) swapped_out=345.2M(2%) unallocated=16.5G(98%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 3168K 72 \nCG raster data 480K 10 \nColorSync 704K 38 \nCoreAnimation 3568K 165 \nCoreGraphics 48K 3 \nCoreImage 64K 2 \nCoreServices 624K 2 \nCoreUI image data 4720K 38 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 15.4G 242 \nMALLOC guard page 288K 18 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.6M 39 \nStack 207.8M 39 \nVM_ALLOCATE 810.8M 710 \nVM_ALLOCATE (reserved) 384.0M 3 reserved VM address space (unallocated)\n__AUTH 5520K 696 \n__AUTH_CONST 77.4M 944 \n__CTF 824 1 \n__DATA 36.4M 1160 \n__DATA_CONST 38.0M 1169 \n__DATA_DIRTY 2777K 343 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 654.8M 220 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1153 \n__TEXT (graphics) 6304K 37 \n__TPRO_CONST 128K 2 \ndyld private memory 10.5M 86 \nmapped file 623.0M 115 \npage table in kernel 7614K 1 \nshared memory 3328K 34 \n=========== ======= ======= \nTOTAL 19.7G 7359 \nTOTAL, minus reserved VM space 19.3G 7359 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "127103aa6144a871a8c1969393be6d55507741e2",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "60da5e84ab0ca017dace9abf",
"factorPackIds" : {
},
"deploymentId" : 240000008
},
{
"rolloutId" : "67648e5334a82511f4acf879",
"factorPackIds" : {
},
"deploymentId" : 240000008
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/chenxi/Desktop/0817_lipf/7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb
> format pdb
Chain information for 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb #1
---
Chain | Description
A B C | No description available
> open /Users/chenxi/Desktop/PDB/7wlt.pdb format pdb
7wlt.pdb title:
The curved structure of MPIEZO1 In lipid bilayer [more info...]
Chain information for 7wlt.pdb #2
---
Chain | Description | UniProt
A C E | protein FAM38A | PIEZ1_MOUSE 1-2547
Non-standard residues in 7wlt.pdb #2
---
P5S —
O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine
(phosphatidyl serine)
PEE — 1,2-dioleoyl-Sn-glycero-3-phosphoethanolamine (DOPE)
PLX —
(9R,11S)-9-({[(1S)-1-hydroxyhexadecyl]oxy}methyl)-2,2-dimethyl-5,7,10-trioxa-2Λ~5~-aza-6Λ~5~-phosphaoctacosane-6,6,11-triol
> open
> /Users/chenxi/Desktop/0817_lipf/rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb
> format pdb
Chain information for rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb #3
---
Chain | Description
A B C | No description available
> open
> /Users/chenxi/Desktop/0808rhlip_all/rhlipc0808/rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb
> format pdb
Chain information for
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb #4
---
Chain | Description
A B C | No description available
> open /Users/chenxi/Desktop/PDB/8ixo.pdb format pdb
8ixo.pdb title:
Intermediate structure of MPIEZO1-S2472E [more info...]
Chain information for 8ixo.pdb #5
---
Chain | Description | UniProt
A B F | protein FAM38A | PIEZ1_MOUSE 1-2547
Non-standard residues in 8ixo.pdb #5
---
P5S —
O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine
(phosphatidyl serine)
PEE — 1,2-dioleoyl-Sn-glycero-3-phosphoethanolamine (DOPE)
PLX —
(9R,11S)-9-({[(1S)-1-hydroxyhexadecyl]oxy}methyl)-2,2-dimethyl-5,7,10-trioxa-2Λ~5~-aza-6Λ~5~-phosphaoctacosane-6,6,11-triol
24 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> ui tool show Matchmaker
> select #1-8: 2501-2547
6207 atoms, 6297 bonds, 705 residues, 5 models selected
> ui tool show Matchmaker
> matchmaker #!2-5 & sel to #1 & sel
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
7wlt.pdb, chain A (#2), sequence alignment score = 233.4
RMSD between 44 pruned atom pairs is 0.675 angstroms; (across all 47 pairs:
0.953)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb, chain A (#3), sequence
alignment score = 215.4
RMSD between 45 pruned atom pairs is 1.182 angstroms; (across all 47 pairs:
1.253)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb, chain A (#4),
sequence alignment score = 232.8
RMSD between 44 pruned atom pairs is 0.736 angstroms; (across all 47 pairs:
1.064)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
8ixo.pdb, chain A (#5), sequence alignment score = 230.4
RMSD between 44 pruned atom pairs is 0.727 angstroms; (across all 47 pairs:
1.079)
> cartoon style sel modeHelix tube sides 20
> set bgColor white
> color #1 #ffb48cff
> color #1 #ffca8cff
> color #1 #ffca80ff
> color #2 #90ceebff
> color #2 #90b3ebff
> color #2 #90b3ffff
> select add #1
39729 atoms, 40584 bonds, 39 pseudobonds, 5061 residues, 6 models selected
> select subtract #1
4968 atoms, 5040 bonds, 564 residues, 4 models selected
> select add #2
37632 atoms, 38481 bonds, 33 pseudobonds, 4509 residues, 6 models selected
> select subtract #2
3720 atoms, 3774 bonds, 423 residues, 3 models selected
> select add #3
36756 atoms, 37572 bonds, 45 pseudobonds, 4728 residues, 4 models selected
> select subtract #3
2481 atoms, 2517 bonds, 282 residues, 2 models selected
> select add #4
38838 atoms, 39771 bonds, 36 pseudobonds, 4680 residues, 3 models selected
> select subtract #4
1233 atoms, 1251 bonds, 141 residues, 1 model selected
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> select subtract #5
Nothing selected
> color #2 #29b3ffff
> color #2 #299dffff
> color #2 #299d8fff
> color #2 #29728fff
> color #2 #297270ff
> color #2 #299d70ff
> color #2 #299d8fff
> color #2 #309d8fff
> color #2 #3a9d8fff
> color #2 #759d8fff
> color #2 #209d8fff
> color #2 #20918fff
> color #2 #20919cff
> color #2 #209182ff
> color #3 #90a0ddff
> color #3 #90b3ddff
> color #3 #90b3ffff
> color #4 #20ee90ff
> color #4 #209190ff
> color #4 #209182ff
> color #2 #9e9a9aff
> color #2 #c6c2c1ff
> color #2 #b6b1b1ff
> color #2 #ada9a8ff
> color #5 #f28072ff
> color #5 #f2a772ff
> color #5 #f2a7bcff
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> view orient
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5.1 models
> hide #!5 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!3 models
> select #3: 2116-2492
8721 atoms, 8946 bonds, 9 pseudobonds, 1089 residues, 2 models selected
> select ~sel & ##selected
25554 atoms, 26109 bonds, 36 pseudobonds, 3357 residues, 2 models selected
> hide sel cartoons
> show #!1 models
> hide #!3 models
> select add #3
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> select subtract #3
Nothing selected
> select #1: 2116-2492
8724 atoms, 8949 bonds, 6 pseudobonds, 1089 residues, 2 models selected
> select ~sel & ##selected
26037 atoms, 26595 bonds, 33 pseudobonds, 3408 residues, 2 models selected
> hide sel cartoons
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> show #!3 models
> select #1: 2476
21 atoms, 18 bonds, 3 residues, 1 model selected
> ui tool show "Color Actions"
> color sel indian red
> select #3: 2476
21 atoms, 18 bonds, 3 residues, 1 model selected
> ui tool show "Color Actions"
> color sel indian red
> select add #3
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> select subtract #3
Nothing selected
> lighting soft
> lighting full
> lighting simple
> lighting shadows true
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> hide #!1,3 atoms
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
> lighting shadows true intensity 0.5
> lighting full
> lighting simple
> lighting shadows true
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting soft
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting simple
> lighting soft
> lighting full
> lighting soft
> view orient
> turn z 50
> turn y 50
> view orient
> turn y 90
> turn z 90
> turn x 5
> turn x -5
> turn y 5
> select #1 and #3 2185-2213
Expected a keyword
> select #1, #3: 2185-2213
Expected an objects specifier or a keyword
> select #1 and #3: 2185-2213
Expected a keyword
> select #1: 2185-2213
702 atoms, 720 bonds, 87 residues, 1 model selected
> transparency 50
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> turn y 5
> ui tool show "Side View"
> ui dockable false "Side View"
> save /Users/chenxi/Desktop/RH-figure/change/rhlf-wtlf.png width 2000 height
> 1468 supersample 3 transparentBackground true
> hide #!1 models
> show #!5 models
> select #5: 2116-2492
8814 atoms, 9045 bonds, 3 pseudobonds, 1101 residues, 2 models selected
> select ~sel & ##selected
23298 atoms, 23754 bonds, 36 pseudobonds, 3099 residues, 2 models selected
> hide sel cartoons
> hide sel atoms
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> select #5: 2476
21 atoms, 18 bonds, 3 residues, 1 model selected
> ui tool show "Color Actions"
> color sel indian red
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> select subtract #5
Nothing selected
> save /Users/chenxi/Desktop/RH-figure/change/rhlf-se.png width 2000 height
> 1468 supersample 3 transparentBackground true
> turn z 90
> turn z -90
> turn x 90
> ui tool show "Side View"
> save /Users/chenxi/Desktop/RH-figure/change/rhlf-se-cap.png width 2000
> height 1468 supersample 3 transparentBackground true
> hide #!5 models
> show #!1 models
> save /Users/chenxi/Desktop/RH-figure/change/rhlf-wtlf-cap.png width 2000
> height 1468 supersample 3 transparentBackground true
> ui tool show "Side View"
> turn x -90
> ui tool show "Side View"
> show #!5 models
> hide #!3 models
> hide #!1 models
> show #!1 models
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> hide #!5 models
> ui mousemode right select
Drag select of 1155 residues, 6 pseudobonds
> select ~sel & ##selected
26037 atoms, 26595 bonds, 33 pseudobonds, 3408 residues, 2 models selected
> select ~sel & ##selected
8724 atoms, 8949 bonds, 6 pseudobonds, 1089 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select ~sel & ##selected
26037 atoms, 26595 bonds, 33 pseudobonds, 3408 residues, 2 models selected
> hide sel cartoons
> show sel cartoons
> ui tool show "Side View"
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> show #!5 models
> ui tool show "Side View"
> view orient
> turn x -90
> turn y 5
> turn y -5
> turn y 5
> show #!2 models
> hide #!2 models
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting flat
> lighting shadows true intensity 0.5
> lighting flat
> lighting soft
> lighting flat
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting full
> lighting simple
> lighting soft
> save "/Users/chenxi/Desktop/RH-figure/model align/sehole+rhlf.png" width
> 2000 height 1468 supersample 3 transparentBackground true
> log metadata #5
Metadata for 8ixo.pdb #5
---
Title | Intermediate structure of MPIEZO1-S2472E
Citation | AN intermediate open structure reveals the gating transitionof the mechanically activated PIEZO1 channel. PMID: 39719701
Non-standard residues | P5S — O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine (phosphatidyl serine)
PEE — 1,2-dioleoyl-Sn-glycero-3-phosphoethanolamine (DOPE)
PLX —
(9R,11S)-9-({[(1S)-1-hydroxyhexadecyl]oxy}methyl)-2,2-dimethyl-5,7,10-trioxa-2Λ~5~-aza-6Λ~5~-phosphaoctacosane-6,6,11-triol
Gene source | Mus musculus (house mouse)
Experimental method | Electron microscopy
Resolution | 4.00Å
> log chains #5
Chain information for 8ixo.pdb #5
---
Chain | Description | UniProt
A B F | protein FAM38A | PIEZ1_MOUSE 1-2547
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> hide #!5 models
> hide #!2.1 models
> hide #!2 atoms
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #1.1 models
> hide #3.1 models
> hide #4.1 models
> hide #!1 models
> save "/Users/chenxi/Desktop/RH-figure/model align/7wlt.png" width 894 height
> 656 supersample 3
> save "/Users/chenxi/Desktop/RH-figure/model align/7wlt.png" width 2000
> height 1468 supersample 3 transparentBackground true
> open /Users/chenxi/Desktop/PDB/8yfg_hp1_RH_mdfic.pdb
8yfg_hp1_RH_mdfic.pdb title:
Human PIEZO1-R2456H_mdfic [more info...]
Chain information for 8yfg_hp1_RH_mdfic.pdb #6
---
Chain | Description | UniProt
A B D | piezo-type mechanosensitive ion channel component 1 | PIEZ1_HUMAN 1-2521
C E F | myod family inhibitor domain-containing protein | MDFIC_HUMAN 2-247
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> hide sel surfaces
> hide (#!6 & sel) target a
> show sel cartoons
> hide sel atoms
> cartoon style (#!6 & sel) modeHelix tube sides 20
> select #1-6: 2116-2492
52605 atoms, 53946 bonds, 27 pseudobonds, 6609 residues, 12 models selected
> ui tool show Matchmaker
> matchmaker #!2-6 & sel to #1 & sel
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
7wlt.pdb, chain A (#2), sequence alignment score = 1801.5
RMSD between 254 pruned atom pairs is 0.701 angstroms; (across all 363 pairs:
2.467)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb, chain A (#3), sequence
alignment score = 1756.8
RMSD between 203 pruned atom pairs is 0.938 angstroms; (across all 363 pairs:
15.989)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb, chain C (#4),
sequence alignment score = 1798.8
RMSD between 239 pruned atom pairs is 1.053 angstroms; (across all 363 pairs:
2.319)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
8ixo.pdb, chain B (#5), sequence alignment score = 1754.3
RMSD between 220 pruned atom pairs is 0.715 angstroms; (across all 361 pairs:
9.420)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
8yfg_hp1_RH_mdfic.pdb, chain A (#6), sequence alignment score = 1473.7
RMSD between 164 pruned atom pairs is 1.284 angstroms; (across all 340 pairs:
11.113)
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> select #1-6: 2501-2547
6762 atoms, 6864 bonds, 768 residues, 6 models selected
> ui tool show Matchmaker
> matchmaker #!1,3-6 & sel to #2 & sel
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7wlt.pdb, chain A (#2) with
7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1), sequence alignment
score = 233.4
RMSD between 44 pruned atom pairs is 0.675 angstroms; (across all 47 pairs:
0.953)
Matchmaker 7wlt.pdb, chain A (#2) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb, chain A (#3), sequence
alignment score = 229.8
RMSD between 42 pruned atom pairs is 0.993 angstroms; (across all 47 pairs:
1.286)
Matchmaker 7wlt.pdb, chain A (#2) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb, chain A (#4),
sequence alignment score = 240.6
RMSD between 47 pruned atom pairs is 0.343 angstroms; (across all 47 pairs:
0.343)
Matchmaker 7wlt.pdb, chain A (#2) with 8ixo.pdb, chain A (#5), sequence
alignment score = 244.8
RMSD between 47 pruned atom pairs is 0.506 angstroms; (across all 47 pairs:
0.506)
Matchmaker 7wlt.pdb, chain A (#2) with 8yfg_hp1_RH_mdfic.pdb, chain A (#6),
sequence alignment score = 101.9
RMSD between 20 pruned atom pairs is 0.385 angstroms; (across all 21 pairs:
1.216)
> select add #1
40284 atoms, 41151 bonds, 39 pseudobonds, 5124 residues, 7 models selected
> select add #2
72948 atoms, 74592 bonds, 72 pseudobonds, 9069 residues, 9 models selected
> select subtract #1
38187 atoms, 39048 bonds, 33 pseudobonds, 4572 residues, 7 models selected
> select subtract #2
4275 atoms, 4341 bonds, 486 residues, 4 models selected
> select add #2
38187 atoms, 39048 bonds, 33 pseudobonds, 4572 residues, 7 models selected
> select subtract #2
4275 atoms, 4341 bonds, 486 residues, 4 models selected
> select add #3
37311 atoms, 38139 bonds, 45 pseudobonds, 4791 residues, 5 models selected
> select subtract #3
3036 atoms, 3084 bonds, 345 residues, 3 models selected
> select add #4
39393 atoms, 40338 bonds, 36 pseudobonds, 4743 residues, 4 models selected
> select subtract #4
1788 atoms, 1818 bonds, 204 residues, 2 models selected
> select add #5
32667 atoms, 33366 bonds, 39 pseudobonds, 4263 residues, 4 models selected
> select subtract #5
555 atoms, 567 bonds, 63 residues, 1 model selected
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> color #6 #ffdbcaff
> color #6 #fcd9c8ff
> show #!5 models
> hide #!2 models
> color #6 #fcbca1ff
> color #6 #fc6f9aff
> color #6 #fc7e6dff
> color #6 #d76b5dff
> color #6 #c76356ff
> color #6 #c75851ff
> color #6 #c74d47ff
> color #6 #c7708eff
> color #6 #c75655ff
> color #6 #c74743ff
> color #6 #c74f5cff
> color #6 #c74641ff
> color #6 #853ac7ff
> color #6 #6f41c7ff
> color #6 #ac76c7ff
> color #6 #c7605dff
> color #6 #c75956ff
> color #6 #c7565bff
> color #6 #52c7b0ff
> show #!4 models
> hide #!4 models
> color #6 #72c7bdff
> show #!4 models
> hide #!4 models
> color #6 #c75e59ff
> color #6 #c74142ff
> color #6 #c74e58ff
> color #6 #c74738ff
> show #!4 models
> hide #!4 models
> color #6 #c7c5c1ff
> color #6 #bfc7c1ff
> show #!2 models
> hide #!2 models
> color #6 #c4c7c2ff
> color #6 #cdd0cbff
> color #6 #fcfff9ff
> show #!2 models
> hide #!2 models
> color #6 #73ff77ff
> color #6 #b5ffbeff
> color #6 #c7ffb3ff
> color #6 #c1ffc0ff
> color #6 #acffa3ff
> color #6 #fa6956ff
> color #6 #faf3acff
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> ui tool show "Color Actions"
> color sel indian red
> color sel dim gray
> color sel dark goldenrod
> color sel rosy brown
> color sel burly wood
> color sel blue violet
> color sel yellow green
> color sel olive
> color sel chartreuse
> color sel yellow green
> color sel dark khaki
> color sel indian red
> color sel saddle brown
> color sel sienna
> color sel coral
> color sel cornflower blue
> color sel peru
> color sel yellow green
> color sel dark goldenrod
> color sel salmon
> color sel indian red
> color sel salmon
> color sel indian red
> color sel sea green
> color sel dark sea green
> show #!4 models
> color sel gainsboro
> show #!2 models
> color #2 #7b7a7aff
> color #2 #939292ff
> hide #!5 models
> hide #!4 models
> select subtract #6
Nothing selected
> color #6 #fdffffff
> hide #6.1 models
> show #!5 models
> hide #!5 models
> hide #!6 models
> show #!4 models
> hide #!4 models
> show #!6 models
> hide #!6 models
> color #2 #b1b1b1ff
> show #!6 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!6 models
> show #!6 models
> hide #!2 models
> show #!2 models
> hide #!6 models
> show #!6 models
> hide #!2 models
> show #!2 models
> show #!4 models
> show #!5 models
> hide #!5 models
> color #4 #54ada4ff
> hide #!4 models
> hide #!2 models
> show #!3 models
> hide #!6 models
> show #!6 models
> view orient
> turn z 90
> turn x 90
> turn x 180
> turn y 5
> hide #!6 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!5 models
> hide #!5 models
> show #!5 models
> show #!1 models
> hide #!1 models
> show #!1 models
> turn y -5
> hide #!1 models
> show #!2 models
> hide #!5 models
> save "/Users/chenxi/Desktop/RH-figure/model align/7wlt.png" width 2000
> height 1468 supersample 3 transparentBackground true
> show #!6 models
> color #6 #bfffbaff
> color #6 #64ffa6ff
> color #6 #cfff46ff
> color #6 #ecff78ff
> color #6 #ff7e75ff
> color #6 #ff847eff
> color #6 #ff7c7bff
> show #!5 models
> hide #!5 models
> color #6 #e87070ff
> color #6 #df6c6cff
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> ui tool show "Color Actions"
> color sel indian red
> select subtract #6
Nothing selected
> color #2 #ccccccff
> color #2 silver
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!6 models
> show #!5 models
> show #!1 models
> save "/Users/chenxi/Desktop/RH-figure/model align/sehole+wtlf.png" width
> 2000 height 1468 supersample 3 transparentBackground true
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!1 models
> hide #!5 models
Drag select of 1140 residues
> undo
> hide #!5 models
> hide #!3 models
> show #!5 models
> show #!1 models
> select #1-6: 2476
138 atoms, 120 bonds, 18 residues, 6 models selected
> color (#!1,5 & sel) red
> select add #1
34878 atoms, 35646 bonds, 39 pseudobonds, 4512 residues, 7 models selected
> select subtract #1
117 atoms, 102 bonds, 15 residues, 5 models selected
> select clear
> save "/Users/chenxi/Desktop/RH-figure/model align/sehole+wtlf.png" width
> 2000 height 1468 supersample 3 transparentBackground true
> hide #!1 models
> hide #!5 models
> show #!3 models
Drag select of 1155 residues
> hide sel cartoons
> select ~sel & ##selected
25554 atoms, 26109 bonds, 36 pseudobonds, 3357 residues, 2 models selected
> show sel cartoons
> select add #3
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> select subtract #3
Nothing selected
> show #!5 models
> save "/Users/chenxi/Desktop/RH-figure/model align/sehole+rhlf.png" width
> 2000 height 1468 supersample 3 transparentBackground true
> hide #!3 models
> hide #!5 models
> show #!2 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
> show #!6 models
> select #1-6: 2476
138 atoms, 120 bonds, 18 residues, 6 models selected
> color sel red
> select clear
> hide #!1 models
> hide #!3 models
> hide #!2 models
> hide #!4 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> hide #!6 models
> show #!5 models
> hide #!5 models
> show #!4 models
> hide #!4 models
> show #!5 models
> hide #!5 models
> show #!4 models
> show #!5 models
> hide #!5 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!2 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> hide #!2 models
> show #!6 models
> show #!2 models
> hide #!6 models
> show #!6 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> hide #!6 models
> show #!6 models
> show #!3 models
> hide #!3 models
> hide #!6 models
> show #!4 models
> show #!6 models
> hide #!6 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!4 models
> show #!6 models
> save "/Users/chenxi/Desktop/RH-figure/model align/8yfg+7wlt.png" width 2000
> height 1468 supersample 3 transparentBackground true
> hide #!6 models
> show #!6 models
> hide #!6 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> show #!1 models
> show sel cartoons
> select subtract #1
Nothing selected
> save "/Users/chenxi/Desktop/RH-figure/model align/7wlu.png" width 2000
> height 1468 supersample 3 transparentBackground true
> hide #!1 models
> show #!3 models
> select add #3
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> show sel cartoons
> select subtract #3
Nothing selected
> hide #!3 models
> show #!3 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf.png" width 2000
> height 1468 supersample 3 transparentBackground true
> hide #!3 models
> show #!4 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!4 models
> hide #!4 atoms
> show #!5 models
> hide #!5 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlc.png" width 894 height
> 656 supersample 3
> hide #!4 models
> show #!4 models
> show #!2 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlc+7wlt.png" width 2000
> height 1468 supersample 3 transparentBackground true
> hide #!4 models
> hide #!2 models
> show #!1 models
> show #!3 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf+7wlu.png" width 2000
> height 1468 supersample 3 transparentBackground true
> hide #!1 models
> show #!5 models
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> show sel cartoons
> select subtract #5
Nothing selected
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf+8ixo.png" width 2000
> height 1468 supersample 3 transparentBackground true
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!1 models
> hide #!1 models
> show #!3 models
> show #!6 models
> hide #!3 models
> hide #!6 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> open /Users/chenxi/Desktop/mP1-RH-detergent/RH-full-
> length/RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb
> format pdb
Chain information for
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb #7
---
Chain | Description
A B C | No description available
> hide #!7 models
> show #!7 models
> hide #!3 models
> hide #!5 models
> hide #!7 surfaces
> hide #7 target a
> show #!7 cartoons
> cartoon style #7 modeHelix tube sides 20
> hide #7.1 models
> hide #!7 models
> show #!7 models
> select add #7
45516 atoms, 46656 bonds, 51 pseudobonds, 5571 residues, 2 models selected
> ui tool show "Color Actions"
> color sel thistle
> color sel plum
> color sel gainsboro
> color sel medium purple
> color sel purple
> color sel thistle
> color #7 #cfb1deff
> color #7 #c69fdeff
> color #7 #c5afdeff
> color #7 #c1abdaff
> color #7 #b399daff
> color #7 #b4a0daff
> color #7 #ad96daff
> color #7 #ad98daff
> select subtract #7
Nothing selected
> hide #!7 models
> select #1-7: 2501-2547
8010 atoms, 8130 bonds, 909 residues, 7 models selected
> show #!1 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
> show #!6 models
> show #!7 models
> view orient
> ui tool show Matchmaker
> matchmaker #!1,3-7 & sel to #2 & sel
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7wlt.pdb, chain A (#2) with
7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1), sequence alignment
score = 233.4
RMSD between 44 pruned atom pairs is 0.675 angstroms; (across all 47 pairs:
0.953)
Matchmaker 7wlt.pdb, chain A (#2) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb, chain A (#3), sequence
alignment score = 229.8
RMSD between 42 pruned atom pairs is 0.993 angstroms; (across all 47 pairs:
1.286)
Matchmaker 7wlt.pdb, chain A (#2) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb, chain A (#4),
sequence alignment score = 240.6
RMSD between 47 pruned atom pairs is 0.343 angstroms; (across all 47 pairs:
0.343)
Matchmaker 7wlt.pdb, chain A (#2) with 8ixo.pdb, chain A (#5), sequence
alignment score = 244.8
RMSD between 47 pruned atom pairs is 0.506 angstroms; (across all 47 pairs:
0.506)
Matchmaker 7wlt.pdb, chain A (#2) with 8yfg_hp1_RH_mdfic.pdb, chain A (#6),
sequence alignment score = 101.9
RMSD between 20 pruned atom pairs is 0.385 angstroms; (across all 21 pairs:
1.216)
Matchmaker 7wlt.pdb, chain A (#2) with
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb,
chain A (#7), sequence alignment score = 233.4
RMSD between 47 pruned atom pairs is 0.329 angstroms; (across all 47 pairs:
0.329)
> select clear
> hide #!1 models
> hide #!2 models
> hide #!4 models
> hide #!6 models
> hide #!7 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!3 models
> show #!1 models
> hide #!1 models
> view orient
> turn x 90
> turn x 180
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> turn y -20
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> hide #!3 models
> show #!2 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!5 models
> hide #!3 models
> show #!3 models
> turn y 5
> show #!2 models
> hide #!3 models
> show #!3 models
> turn y -5
> hide #!5 models
> hide #!3 models
> hide #!2 models
> show #!3 models
> show #!2 models
> show #!5 models
> hide #!2 models
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> select clear
> ui mousemode right "rotate selected models"
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> view matrix models
> #5,0.6268,-0.77847,0.033399,220.59,-0.77721,-0.62768,-0.044291,490.46,0.055443,0.0018034,-0.99846,424.49
> select subtract #5
Nothing selected
> select #1-7: 2490-2547
9909 atoms, 10086 bonds, 1140 residues, 7 models selected
> ui tool show Matchmaker
> matchmaker #!2-7 & sel to #1 & sel ssFraction false
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
7wlt.pdb, chain A (#2), sequence alignment score = 301
RMSD between 55 pruned atom pairs is 0.927 angstroms; (across all 58 pairs:
1.091)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb, chain A (#3), sequence
alignment score = 301
RMSD between 52 pruned atom pairs is 1.076 angstroms; (across all 58 pairs:
1.301)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb, chain A (#4),
sequence alignment score = 301
RMSD between 54 pruned atom pairs is 0.933 angstroms; (across all 58 pairs:
1.170)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
8ixo.pdb, chain A (#5), sequence alignment score = 301
RMSD between 51 pruned atom pairs is 0.764 angstroms; (across all 58 pairs:
1.216)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
8yfg_hp1_RH_mdfic.pdb, chain A (#6), sequence alignment score = 161
RMSD between 29 pruned atom pairs is 0.658 angstroms; (across all 32 pairs:
1.523)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb, chain A (#1) with
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb,
chain A (#7), sequence alignment score = 301
RMSD between 56 pruned atom pairs is 0.951 angstroms; (across all 58 pairs:
1.062)
> hide #!3 models
> show #!3 models
> ui tool show Matchmaker
> matchmaker #!2-7 & sel to #1 & sel alg Smith-Waterman ssFraction false
> showAlignment true
Parameters
---
Chain pairing | bb
Alignment algorithm | Smith-Waterman
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb (#1) with 7wlt.pdb
(#2), sequence alignment score = 301
Alignment identifier is 1
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1
Hiding conservation header for alignment 1
Chains used in RMSD evaluation for alignment 1:
7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb #1/A, 7wlt.pdb #2/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1
RMSD between 55 pruned atom pairs is 0.927 angstroms; (across all 58 pairs:
1.091)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb (#1) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb (#3), sequence alignment
score = 301
Alignment identifier is 2
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2
Hiding conservation header for alignment 2
Chains used in RMSD evaluation for alignment 2:
7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb #1/A,
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2
RMSD between 52 pruned atom pairs is 1.076 angstroms; (across all 58 pairs:
1.301)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb (#1) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb (#4), sequence
alignment score = 301
Alignment identifier is 3
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3
Hiding conservation header for alignment 3
Chains used in RMSD evaluation for alignment 3:
7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb #1/A,
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb #4/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3
RMSD between 54 pruned atom pairs is 0.933 angstroms; (across all 58 pairs:
1.170)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb (#1) with 8ixo.pdb
(#5), sequence alignment score = 301
Alignment identifier is 4
Showing conservation header ("seq_conservation" residue attribute) for
alignment 4
Hiding conservation header for alignment 4
Chains used in RMSD evaluation for alignment 4:
7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb #1/A, 8ixo.pdb #5/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4
RMSD between 51 pruned atom pairs is 0.764 angstroms; (across all 58 pairs:
1.216)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb (#1) with
8yfg_hp1_RH_mdfic.pdb (#6), sequence alignment score = 161
Alignment identifier is 5
Showing conservation header ("seq_conservation" residue attribute) for
alignment 5
Hiding conservation header for alignment 5
Chains used in RMSD evaluation for alignment 5:
7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb #1/A, 8yfg_hp1_RH_mdfic.pdb #6/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5
RMSD between 29 pruned atom pairs is 0.658 angstroms; (across all 32 pairs:
1.523)
Matchmaker 7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb (#1) with
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb
(#7), sequence alignment score = 301
Alignment identifier is 6
Showing conservation header ("seq_conservation" residue attribute) for
alignment 6
Hiding conservation header for alignment 6
Chains used in RMSD evaluation for alignment 6:
7wlu0815_ncs74-coot-1-ref75-withlipid-2.pdb #1/A,
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb #7/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 6
RMSD between 56 pruned atom pairs is 0.951 angstroms; (across all 58 pairs:
1.062)
> select #1/A:2541 #7/A:2541
18 atoms, 16 bonds, 2 residues, 2 models selected
> show #!1 models
> show #!2 models
> show #!4 models
> show #!6 models
> show #!7 models
> select add #1
34770 atoms, 35552 bonds, 39 pseudobonds, 4498 residues, 3 models selected
> select subtract #1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #7
45516 atoms, 46656 bonds, 51 pseudobonds, 5571 residues, 2 models selected
> select subtract #7
Nothing selected
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> show #!7 models
> show #!6 models
> hide #!6 models
> hide #!7 models
> show #!5 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> hide #!5 models
> show #!4 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!1 models
> show #!2 models
> show #!3 models
> show #!5 models
> show #!6 models
> show #!7 models
> select #1-7: 2490-2547
9909 atoms, 10086 bonds, 1140 residues, 7 models selected
> ui tool show "Similar Structures"
> ui tool show Matchmaker
> select add #1
43164 atoms, 44097 bonds, 39 pseudobonds, 5463 residues, 8 models selected
> select add #2
75561 atoms, 77262 bonds, 72 pseudobonds, 9375 residues, 10 models selected
> select add #3
108330 atoms, 110784 bonds, 117 pseudobonds, 13647 residues, 11 models
selected
> select subtract #3
74055 atoms, 75729 bonds, 72 pseudobonds, 9201 residues, 9 models selected
> select clear
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!2 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!1 models
> rename chain C to B #1
Missing or invalid "models" argument: invalid models specifier
> rename #1 chain C to B
Expected a keyword
> rename #1 chainC to B
Expected a keyword
> rename #1 chainC B
Expected a keyword
> ui tool show "Change Chain IDs"
> changechains #* B
Proposed chain ID change would produce multiple residues with the samechain-
ID/number/insertion-code combo (B/576/)
> rename #1 chainC
> ui tool show "Change Chain IDs"
> select #1/C
11587 atoms, 11848 bonds, 13 pseudobonds, 1499 residues, 2 models selected
> changechains sel B
Proposed chainID change conflicts with existing residue chainC #1/B GLU 576
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> hide #!1 models
> show #!1 models
> select #1/B
11587 atoms, 11848 bonds, 13 pseudobonds, 1499 residues, 2 models selected
> show #!2 models
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> hide #!2 models
> changechains C D
Proposed chain ID change would produce multiple residues with the samechain-
ID/number/insertion-code combo (D/576/)
> select #1/ B
11587 atoms, 11848 bonds, 13 pseudobonds, 1499 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel D
Chain IDs of 1499 residues changed
> select #1/ C
11587 atoms, 11848 bonds, 13 pseudobonds, 1499 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel B
Chain IDs of 1499 residues changed
> select #1/ D
11587 atoms, 11848 bonds, 13 pseudobonds, 1499 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel C
Chain IDs of 1499 residues changed
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> hide #!1 models
> show #!3 models
> hide #!3 models
> show #!4 models
> show #!5 models
> hide #!4 models
> hide #!5 models
> show #!6 models
> hide #!6 models
> show #!2 models
> hide #!2 models
> show #!3 models
> select #3/ B
11425 atoms, 11685 bonds, 15 pseudobonds, 1482 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel D
Chain IDs of 1482 residues changed
> select #3/ C
11425 atoms, 11685 bonds, 15 pseudobonds, 1482 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel B
Chain IDs of 1482 residues changed
> ui tool show "Change Chain IDs"
> changechains sel B
Chain IDs of 0 residues changed
> select #3/ D
11425 atoms, 11685 bonds, 15 pseudobonds, 1482 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel C
Chain IDs of 1482 residues changed
> select add #3
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> select subtract #3
Nothing selected
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> select #5/ F
10704 atoms, 10933 bonds, 13 pseudobonds, 1400 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel C
Chain IDs of 1400 residues changed
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> hide #!5 models
> select subtract #5
Nothing selected
> show #!6 models
> select #6/ D
10394 atoms, 10647 bonds, 15 pseudobonds, 1280 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel C
Chain IDs of 1280 residues changed
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> hide #!6 models
> show #!7 models
> select #7/ B
14702 atoms, 15091 bonds, 17 pseudobonds, 1848 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel D
Chain IDs of 1848 residues changed
> select #7/ B
Nothing selected
> select #7/ C
14702 atoms, 15091 bonds, 17 pseudobonds, 1848 residues, 2 models selected
> ui tool show "Renumber Residues"
> ui tool show "Change Chain IDs"
> changechains sel B
Chain IDs of 1848 residues changed
> select #7/ D
14702 atoms, 15091 bonds, 17 pseudobonds, 1848 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel C
Chain IDs of 1848 residues changed
> select add #7
45516 atoms, 46656 bonds, 51 pseudobonds, 5571 residues, 2 models selected
> select subtract #7
Nothing selected
> hide #!7 models
> show #!1 models
> rename #1 7wlu-rechain
> matchmaker #2-7 to #1 :2490-2547
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7wlu-rechain, chain A (#1) with 7wlt.pdb, chain A (#2), sequence
alignment score = 280.3
RMSD between 55 pruned atom pairs is 0.927 angstroms; (across all 58 pairs:
1.091)
Matchmaker 7wlu-rechain, chain A (#1) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb, chain A (#3), sequence
alignment score = 268.3
RMSD between 52 pruned atom pairs is 1.076 angstroms; (across all 58 pairs:
1.301)
Matchmaker 7wlu-rechain, chain A (#1) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb, chain C (#4),
sequence alignment score = 288.7
RMSD between 55 pruned atom pairs is 0.970 angstroms; (across all 58 pairs:
1.172)
Matchmaker 7wlu-rechain, chain A (#1) with 8ixo.pdb, chain A (#5), sequence
alignment score = 277.3
RMSD between 51 pruned atom pairs is 0.764 angstroms; (across all 58 pairs:
1.216)
Matchmaker 7wlu-rechain, chain A (#1) with 8yfg_hp1_RH_mdfic.pdb, chain A
(#6), sequence alignment score = 273.4
RMSD between 50 pruned atom pairs is 0.747 angstroms; (across all 58 pairs:
1.460)
Matchmaker 7wlu-rechain, chain A (#1) with
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb,
chain A (#7), sequence alignment score = 272.5
RMSD between 56 pruned atom pairs is 0.951 angstroms; (across all 58 pairs:
1.062)
> show #!2 models
> hide #!1 models
> show #!3 models
> hide #!2 models
> hide #!3 models
> show #!1 models
> show #!3 models
> select #1: 2490-2547
1506 atoms, 1533 bonds, 174 residues, 1 model selected
> select #1-7: 2490-2547
9909 atoms, 10086 bonds, 1140 residues, 7 models selected
> ui tool show Matchmaker
> matchmaker #!2-7 & sel to #1 & sel ssFraction false showAlignment true
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlu-rechain, chain A (#1) with 7wlt.pdb, chain A (#2), sequence
alignment score = 301
Alignment identifier is 3
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3
Hiding conservation header for alignment 3
Chains used in RMSD evaluation for alignment 3: 7wlu-rechain #1/A, 7wlt.pdb
#2/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3
RMSD between 55 pruned atom pairs is 0.927 angstroms; (across all 58 pairs:
1.091)
Matchmaker 7wlu-rechain, chain A (#1) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb, chain A (#3), sequence
alignment score = 301
Alignment identifier is 5
Showing conservation header ("seq_conservation" residue attribute) for
alignment 5
Hiding conservation header for alignment 5
Chains used in RMSD evaluation for alignment 5: 7wlu-rechain #1/A,
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5
RMSD between 52 pruned atom pairs is 1.076 angstroms; (across all 58 pairs:
1.301)
Matchmaker 7wlu-rechain, chain A (#1) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb, chain A (#4),
sequence alignment score = 301
Alignment identifier is 6
Showing conservation header ("seq_conservation" residue attribute) for
alignment 6
Hiding conservation header for alignment 6
Chains used in RMSD evaluation for alignment 6: 7wlu-rechain #1/A,
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb #4/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 6
RMSD between 54 pruned atom pairs is 0.933 angstroms; (across all 58 pairs:
1.170)
Matchmaker 7wlu-rechain, chain A (#1) with 8ixo.pdb, chain A (#5), sequence
alignment score = 301
Alignment identifier is 7
Showing conservation header ("seq_conservation" residue attribute) for
alignment 7
Hiding conservation header for alignment 7
Chains used in RMSD evaluation for alignment 7: 7wlu-rechain #1/A, 8ixo.pdb
#5/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 7
RMSD between 51 pruned atom pairs is 0.764 angstroms; (across all 58 pairs:
1.216)
Matchmaker 7wlu-rechain, chain A (#1) with 8yfg_hp1_RH_mdfic.pdb, chain A
(#6), sequence alignment score = 161
Alignment identifier is 8
Showing conservation header ("seq_conservation" residue attribute) for
alignment 8
Hiding conservation header for alignment 8
Chains used in RMSD evaluation for alignment 8: 7wlu-rechain #1/A,
8yfg_hp1_RH_mdfic.pdb #6/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 8
RMSD between 29 pruned atom pairs is 0.658 angstroms; (across all 32 pairs:
1.523)
Matchmaker 7wlu-rechain, chain A (#1) with
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb,
chain A (#7), sequence alignment score = 301
Alignment identifier is 9
Showing conservation header ("seq_conservation" residue attribute) for
alignment 9
Hiding conservation header for alignment 9
Chains used in RMSD evaluation for alignment 9: 7wlu-rechain #1/A,
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb #7/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 9
RMSD between 56 pruned atom pairs is 0.951 angstroms; (across all 58 pairs:
1.062)
> matchmaker #2-7/A,B,C:50-100 to #1/A,B,C:50-100
No 'to' model specified
> matchmaker #2-7 /A,B,C: 2490-2547 to #1/ A,B,C: 2490-2547
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7wlu-rechain, chain A (#1) with 7wlt.pdb, chain A (#2), sequence
alignment score = 280.3
RMSD between 55 pruned atom pairs is 0.927 angstroms; (across all 58 pairs:
1.091)
Matchmaker 7wlu-rechain, chain A (#1) with
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb, chain A (#3), sequence
alignment score = 268.3
RMSD between 52 pruned atom pairs is 1.076 angstroms; (across all 58 pairs:
1.301)
Matchmaker 7wlu-rechain, chain A (#1) with
rhlip_curve_apply_ncs_51_real_space_refined_053-coot-4.pdb, chain C (#4),
sequence alignment score = 288.7
RMSD between 55 pruned atom pairs is 0.970 angstroms; (across all 58 pairs:
1.172)
Matchmaker 7wlu-rechain, chain A (#1) with 8ixo.pdb, chain A (#5), sequence
alignment score = 277.3
RMSD between 51 pruned atom pairs is 0.764 angstroms; (across all 58 pairs:
1.216)
Matchmaker 7wlu-rechain, chain A (#1) with 8yfg_hp1_RH_mdfic.pdb, chain A
(#6), sequence alignment score = 140.3
RMSD between 29 pruned atom pairs is 0.658 angstroms; (across all 32 pairs:
1.523)
Matchmaker 7wlu-rechain, chain A (#1) with
RH_detergent_apply_ncs_120-fit-j126-map_real_space_refined_129-coot-2.pdb,
chain A (#7), sequence alignment score = 272.5
RMSD between 56 pruned atom pairs is 0.951 angstroms; (across all 58 pairs:
1.062)
> show #!4 models
> hide #!3 models
> select #1-7: 2490-2547
9909 atoms, 10086 bonds, 1140 residues, 7 models selected
> select ~sel
239871 atoms, 245531 bonds, 288 pseudobonds, 30102 residues, 16 models
selected
> hide sel & #!1,4 cartoons
> view orient
> hide #!4 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> show #!3 models
> show #!2 models
> show #!5 models
> show #!6 models
> show #!7 models
> select #1-7: 2490-2547
9909 atoms, 10086 bonds, 1140 residues, 7 models selected
> select ~sel
239871 atoms, 245531 bonds, 288 pseudobonds, 30102 residues, 16 models
selected
> hide sel cartoons
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> show #!3 models
> show #!1 models
> view orient
> select add #1
241377 atoms, 247067 bonds, 288 pseudobonds, 30276 residues, 16 models
selected
> select add #2
242892 atoms, 248612 bonds, 288 pseudobonds, 30450 residues, 16 models
selected
> select subtract #2
208980 atoms, 213905 bonds, 255 pseudobonds, 26364 residues, 13 models
selected
> select clear
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 0 maps.
> ui tool show Matchmaker
> hide #!1 models
> hide #!3 models
> show #!2 models
> show #!4 models
> hide #!4 models
> select #1/C
11587 atoms, 11848 bonds, 13 pseudobonds, 1499 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel B
Proposed chainID change conflicts with existing residue 7wlu-rechain #1/B GLU
576
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> select #2/C
11304 atoms, 11569 bonds, 11 pseudobonds, 1362 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel B
Chain IDs of 1362 residues changed
> select #2/E
11304 atoms, 11569 bonds, 11 pseudobonds, 1362 residues, 2 models selected
> ui tool show "Change Chain IDs"
> changechains sel C
Chain IDs of 1362 residues changed
> select add #2
33912 atoms, 34707 bonds, 33 pseudobonds, 4086 residues, 3 models selected
> select subtract #2
Nothing selected
> rename #3 rhlf-0814
> rename #4 rhlc
> rename #7 rhdc
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!1 models
> show #!3 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!1 models
> ui tool show Matchmaker
> matchmaker #1/A#1/B#1/C to #2/A#2/B#2/C pairing ss ssFraction false
> showAlignment true
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlt.pdb, chain A (#2) with 7wlu-rechain, chain A (#1), sequence
alignment score = 7177
Alignment identifier is 10
Showing conservation header ("seq_conservation" residue attribute) for
alignment 10
Hiding conservation header for alignment 10
Chains used in RMSD evaluation for alignment 10: 7wlu-rechain #1/A, 7wlt.pdb
#2/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 10
Matchmaker 7wlt.pdb, chain B (#2) with 7wlu-rechain, chain B (#1), sequence
alignment score = 7177
Alignment identifier is 11
Showing conservation header ("seq_conservation" residue attribute) for
alignment 11
Hiding conservation header for alignment 11
Chains used in RMSD evaluation for alignment 11: 7wlu-rechain #1/B, 7wlt.pdb
#2/B
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 11
Matchmaker 7wlt.pdb, chain C (#2) with 7wlu-rechain, chain C (#1), sequence
alignment score = 7177
Alignment identifier is 12
Showing conservation header ("seq_conservation" residue attribute) for
alignment 12
Hiding conservation header for alignment 12
Chains used in RMSD evaluation for alignment 12: 7wlu-rechain #1/C, 7wlt.pdb
#2/C
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 12
RMSD between 750 pruned atom pairs is 0.634 angstroms; (across all 3822 pairs:
24.058)
> select clear
> show #!2 models
> hide #!3 models
> hide #!2 models
> show #!3 models
> show #!2 models
> hide #!1 models
> ui tool show Matchmaker
> matchmaker #3/A#3/B#3/C to #2/A#2/B#2/C pairing ss ssFraction false
> showAlignment true
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlt.pdb, chain A (#2) with rhlf-0814, chain A (#3), sequence
alignment score = 7066
Alignment identifier is 10
Showing conservation header ("seq_conservation" residue attribute) for
alignment 10
Hiding conservation header for alignment 10
Chains used in RMSD evaluation for alignment 10: 7wlt.pdb #2/A, rhlf-0814 #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 10
Matchmaker 7wlt.pdb, chain B (#2) with rhlf-0814, chain B (#3), sequence
alignment score = 7066
Alignment identifier is 11
Showing conservation header ("seq_conservation" residue attribute) for
alignment 11
Hiding conservation header for alignment 11
Chains used in RMSD evaluation for alignment 11: 7wlt.pdb #2/B, rhlf-0814 #3/B
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 11
Matchmaker 7wlt.pdb, chain C (#2) with rhlf-0814, chain C (#3), sequence
alignment score = 7066
Alignment identifier is 12
Showing conservation header ("seq_conservation" residue attribute) for
alignment 12
Hiding conservation header for alignment 12
Chains used in RMSD evaluation for alignment 12: 7wlt.pdb #2/C, rhlf-0814 #3/C
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 12
RMSD between 303 pruned atom pairs is 1.225 angstroms; (across all 3822 pairs:
30.759)
> hide #!3 models
> show #!4 models
> show #!3 models
> hide #!3 models
> ui tool show Matchmaker
> matchmaker #4/A#4/B#4/C to #2/A#2/B#2/C pairing ss ssFraction false
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlt.pdb, chain A (#2) with rhlc, chain A (#4), sequence alignment
score = 7252
Matchmaker 7wlt.pdb, chain B (#2) with rhlc, chain B (#4), sequence alignment
score = 7252
Matchmaker 7wlt.pdb, chain C (#2) with rhlc, chain C (#4), sequence alignment
score = 7252
RMSD between 1532 pruned atom pairs is 1.144 angstroms; (across all 4059
pairs: 6.889)
> hide #!4 models
> show #!5 models
> ui tool show Matchmaker
> matchmaker #5/A#5/B#5/C to #2/A#2/B#2/C pairing ss ssFraction false
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlt.pdb, chain A (#2) with 8ixo.pdb, chain A (#5), sequence
alignment score = 13421
Matchmaker 7wlt.pdb, chain B (#2) with 8ixo.pdb, chain B (#5), sequence
alignment score = 13421
Matchmaker 7wlt.pdb, chain C (#2) with 8ixo.pdb, chain C (#5), sequence
alignment score = 13421
RMSD between 453 pruned atom pairs is 0.925 angstroms; (across all 3747 pairs:
20.776)
> ui tool show Matchmaker
> show #!6 models
> hide #!5 models
> matchmaker #6/A#6/B#6/C to #2/A#2/B#2/C pairing ss ssFraction false
Different number of reference/match chains (3 ref, 4 match)
> select add #6.1
45 pseudobonds, 1 model selected
> select subtract #6.1
Nothing selected
> show #6.1 models
> hide #6.1 models
> select #6/ E
141 atoms, 141 bonds, 21 residues, 1 model selected
> show sel cartoons
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> show sel cartoons
> select subtract #6.1
31599 atoms, 32357 bonds, 3903 residues, 1 model selected
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> select #6/ E
141 atoms, 141 bonds, 21 residues, 1 model selected
> select #6 : 2490-2547
852 atoms, 867 bonds, 96 residues, 1 model selected
> select ~sel & ##selected
30747 atoms, 31490 bonds, 45 pseudobonds, 3807 residues, 2 models selected
> hide sel cartoons
> view orient
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> matchmaker #6/A#6/B#6/C to #2/A#2/B#2/C pairing ss ssFraction false
Different number of reference/match chains (3 ref, 4 match)
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> show sel cartoons
> select subtract #6
Nothing selected
> select #6/C
10535 atoms, 10788 bonds, 15 pseudobonds, 1301 residues, 2 models selected
> ui tool show "Side View"
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> ui mousemode right select
Drag select of 21 residues
Drag select of 7 residues
Drag select of 10 residues
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> select #6: 227-247
423 atoms, 423 bonds, 63 residues, 1 model selected
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
Drag select of 8 residues
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
Drag select of 23 residues
Drag select of 5 residues
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
Drag select of 23 residues
> select #6/E
141 atoms, 141 bonds, 21 residues, 1 model selected
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
Drag select of 23 residues
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> hide #!6 models
> show #!6 models
> close #6
> open /Users/chenxi/Desktop/PDB/8yfg_hp1_RH_mdfic.pdb
8yfg_hp1_RH_mdfic.pdb title:
Human PIEZO1-R2456H_mdfic [more info...]
Chain information for 8yfg_hp1_RH_mdfic.pdb #6
---
Chain | Description | UniProt
A B D | piezo-type mechanosensitive ion channel component 1 | PIEZ1_HUMAN 1-2521
C E F | myod family inhibitor domain-containing protein | MDFIC_HUMAN 2-247
Associated 8yfg_hp1_RH_mdfic.pdb chain A to 7wlt.pdb with 1 mismatch
Associated 8yfg_hp1_RH_mdfic.pdb chain B to 7wlt.pdb with 1 mismatch
Associated 8yfg_hp1_RH_mdfic.pdb chain D to 7wlt.pdb with 1 mismatch
Chains used in RMSD evaluation for alignment 1: 7wlu-rechain #1/A, 7wlt.pdb
#2/A, 8yfg_hp1_RH_mdfic.pdb #6/D
Associated 8yfg_hp1_RH_mdfic.pdb chain A to
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb with 1 mismatch
Associated 8yfg_hp1_RH_mdfic.pdb chain B to
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb with 1 mismatch
Associated 8yfg_hp1_RH_mdfic.pdb chain D to
rhlipf0814_ncs70_realspace_refined_072-coot-0.pdb with 1 mismatch
Chains used in RMSD evaluation for alignment 2: 7wlu-rechain #1/A, rhlf-0814
#3/A, 8yfg_hp1_RH_mdfic.pdb #6/D
Associated 8yfg_hp1_RH_mdfic.pdb chain A to 8ixo.pdb with 1 mismatch
Associated 8yfg_hp1_RH_mdfic.pdb chain B to 8ixo.pdb with 1 mismatch
Associated 8yfg_hp1_RH_mdfic.pdb chain D to 8ixo.pdb with 1 mismatch
Chains used in RMSD evaluation for alignment 4: 7wlu-rechain #1/A, 8ixo.pdb
#5/A, 8yfg_hp1_RH_mdfic.pdb #6/D
Associated 8yfg_hp1_RH_mdfic.pdb chain A to 8yfg_hp1_RH_mdfic.pdb, chain A
with 0 mismatches
Associated 8yfg_hp1_RH_mdfic.pdb chain B to 8yfg_hp1_RH_mdfic.pdb, chain A
with 0 mismatches
Associated 8yfg_hp1_RH_mdfic.pdb chain D to 8yfg_hp1_RH_mdfic.pdb, chain A
with 0 mismatches
Chains used in RMSD evaluation for alignment 8: 7wlu-rechain #1/A,
8yfg_hp1_RH_mdfic.pdb #6/D
> view
> ui tool show "Side View"
> view orient
> show #!2,6 cartoons
> hide #!2 models
> show #!6 cartoons
> hide #6 target a
> cartoon style #6 modeHelix tube sides 20
> ui tool show "Color Actions"
> color indian red
> undo
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> ui tool show "Color Actions"
> color sel indian red
> hide #6.1 models
> select subtract #6.1
31599 atoms, 32357 bonds, 3903 residues, 1 model selected
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> select #6: 2490-2547
852 atoms, 867 bonds, 96 residues, 1 model selected
> select ~sel & ##selected
30747 atoms, 31490 bonds, 45 pseudobonds, 3807 residues, 2 models selected
> hide sel cartoons
> select subtract #6.1
30747 atoms, 31490 bonds, 3807 residues, 1 model selected
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!2 models
> select #2: 2490-2547
1515 atoms, 1542 bonds, 174 residues, 1 model selected
> select ~sel & ##selected
32397 atoms, 33165 bonds, 33 pseudobonds, 3912 residues, 2 models selected
> hide sel cartoons
> hide #!6 models
> select add #2
33912 atoms, 34707 bonds, 33 pseudobonds, 4086 residues, 3 models selected
> select subtract #2
Nothing selected
> show #!6 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> select #6: 2490-2547
852 atoms, 867 bonds, 96 residues, 1 model selected
> show sel cartoons
> select #2: 2490-2547
1515 atoms, 1542 bonds, 174 residues, 1 model selected
> select add #2
33912 atoms, 34707 bonds, 33 pseudobonds, 4086 residues, 3 models selected
> select subtract #2
Nothing selected
> hide #!3 models
> select #6: 2490-2547
852 atoms, 867 bonds, 96 residues, 1 model selected
> select ~sel & ##selected
30747 atoms, 31490 bonds, 45 pseudobonds, 3807 residues, 2 models selected
> show sel cartoons
> hide sel cartoons
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> select subtract #6
Nothing selected
> matchmaker #6/A#6/B#6/D to #2/A#2/B#2/C pairing ss ssFraction false
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlt.pdb, chain A (#2) with 8yfg_hp1_RH_mdfic.pdb, chain A (#6),
sequence alignment score = 10759
Matchmaker 7wlt.pdb, chain B (#2) with 8yfg_hp1_RH_mdfic.pdb, chain B (#6),
sequence alignment score = 10759
Matchmaker 7wlt.pdb, chain C (#2) with 8yfg_hp1_RH_mdfic.pdb, chain D (#6),
sequence alignment score = 10759
RMSD between 800 pruned atom pairs is 1.358 angstroms; (across all 3504 pairs:
10.161)
Chains used in RMSD evaluation for alignment 1: 7wlu-rechain #1/A, 7wlt.pdb
#2/A, 8yfg_hp1_RH_mdfic.pdb #6/A
Chains used in RMSD evaluation for alignment 2: 7wlu-rechain #1/A, rhlf-0814
#3/A, 8yfg_hp1_RH_mdfic.pdb #6/A
Chains used in RMSD evaluation for alignment 4: 7wlu-rechain #1/A, 8ixo.pdb
#5/A, 8yfg_hp1_RH_mdfic.pdb #6/A
Chains used in RMSD evaluation for alignment 8: 7wlu-rechain #1/A,
8yfg_hp1_RH_mdfic.pdb #6/A
> hide #!6 models
> show #!7 models
> view orient
> ui tool show Matchmaker
> matchmaker #7/A#7/B#7/C to #2/A#2/B#2/C pairing ss ssFraction false
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlt.pdb, chain A (#2) with rhdc, chain A (#7), sequence alignment
score = 8828
Matchmaker 7wlt.pdb, chain B (#2) with rhdc, chain B (#7), sequence alignment
score = 8828
Matchmaker 7wlt.pdb, chain C (#2) with rhdc, chain C (#7), sequence alignment
score = 8828
RMSD between 1801 pruned atom pairs is 1.163 angstroms; (across all 4059
pairs: 4.567)
> hide #!7 models
> hide #!2 models
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select add #2
68673 atoms, 70251 bonds, 72 pseudobonds, 8583 residues, 5 models selected
> select add #3
102948 atoms, 105306 bonds, 117 pseudobonds, 13029 residues, 7 models selected
> select add #4
140553 atoms, 143826 bonds, 153 pseudobonds, 17568 residues, 9 models selected
> select add #5
172665 atoms, 176625 bonds, 192 pseudobonds, 21768 residues, 12 models
selected
> select add #6
204264 atoms, 208982 bonds, 237 pseudobonds, 25671 residues, 14 models
selected
> select add #7
249780 atoms, 255638 bonds, 288 pseudobonds, 31242 residues, 16 models
selected
> select subtract #1
215019 atoms, 220094 bonds, 249 pseudobonds, 26745 residues, 14 models
selected
> select subtract #2
181107 atoms, 185387 bonds, 216 pseudobonds, 22659 residues, 11 models
selected
> select subtract #3
146832 atoms, 150332 bonds, 171 pseudobonds, 18213 residues, 9 models selected
> select subtract #5
114720 atoms, 117533 bonds, 132 pseudobonds, 14013 residues, 6 models selected
> select subtract #6
83121 atoms, 85176 bonds, 87 pseudobonds, 10110 residues, 4 models selected
> select subtract #7
37605 atoms, 38520 bonds, 36 pseudobonds, 4539 residues, 2 models selected
> select subtract #4
Nothing selected
> show #!1 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
> show #!6 models
> show #!7 models
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> show sel cartoons
> select subtract #1
Nothing selected
> hide #!1 models
> select add #2
33912 atoms, 34707 bonds, 33 pseudobonds, 4086 residues, 3 models selected
> show sel cartoons
> select subtract #2
Nothing selected
> hide #!2 models
> select add #3
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> show sel cartoons
> select subtract #3
Nothing selected
> hide #!3 models
> select add #4
37605 atoms, 38520 bonds, 36 pseudobonds, 4539 residues, 2 models selected
> show sel cartoons
> select subtract #4
Nothing selected
> hide #!4 models
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> show sel cartoons
> select subtract #5
Nothing selected
> hide #!5 models
> select add #6
31599 atoms, 32357 bonds, 45 pseudobonds, 3903 residues, 2 models selected
> show sel cartoons
> select subtract #6
Nothing selected
> hide #!6 models
> select add #7
45516 atoms, 46656 bonds, 51 pseudobonds, 5571 residues, 2 models selected
> show sel cartoons
> select subtract #7
Nothing selected
> hide #!7 models
> show #!2 models
> show #!3 models
> view orient
> turn x 90
> turn x 180
> turn y -20
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> show #!1 models
> view
> ui tool show "Side View"
> show #!4 models
> show #!5 models
> show #!6 models
> show #!7 models
> select #1-7: 2476
159 atoms, 138 bonds, 21 residues, 7 models selected
> color sel red
> select clear
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> show #!2 models
> save "/Users/chenxi/Desktop/RH-figure/model align/7wlt.png" width 2000
> height 1237 supersample 3 transparentBackground true
> hide #!2 models
> show #!1 models
> save "/Users/chenxi/Desktop/RH-figure/model align/7wlt.png" width 2000
> height 1237 supersample 3 transparentBackground true
> hide #!1 models
> show #!3 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf.png" width 2000
> height 1237 supersample 3 transparentBackground true
> hide #!3 models
> show #!4 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlc.png" width 2000
> height 1237 supersample 3 transparentBackground true
> hide #!4 models
> show #!6 models
> hide #!6 models
> show #!7 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhdc.png" width 2000
> height 1237 supersample 3 transparentBackground true
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!5 models
> select #5: 2116-2492
8814 atoms, 9045 bonds, 3 pseudobonds, 1101 residues, 2 models selected
> select ~sel & ##selected
23298 atoms, 23754 bonds, 36 pseudobonds, 3099 residues, 2 models selected
> hide sel cartoons
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> select subtract #5
Nothing selected
> show #!1 models
> select #1: 2116-2492
8724 atoms, 8949 bonds, 6 pseudobonds, 1089 residues, 2 models selected
> hide sel cartoons
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf+7wlu.png" width 2000
> height 1237 supersample 3 transparentBackground true
> save "/Users/chenxi/Desktop/RH-figure/model align/sehole+wtlf.png" width
> 2000 height 1237 supersample 3 transparentBackground true
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> hide #!1 models
> show #!1 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> hide #!1 models
> show #!3 models
> show #!1 models
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> show sel cartoons
> select subtract #1
Nothing selected
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!5 models
> select add #5
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> show sel cartoons
> select subtract #5
Nothing selected
> hide #!5 models
> show #!1 models
> hide #!1 models
> show #!5 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf+8ixo.png" width 2000
> height 1237 supersample 3 transparentBackground true
> hide #!5 models
> show #!5 models
> hide #!5 models
> hide #!3 models
> show #!6 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!1 models
> hide #!1 models
> show #!2 models
> save "/Users/chenxi/Desktop/RH-figure/model align/8yfg+7wlt.png" width 2000
> height 1237 supersample 3 transparentBackground true
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!7 models
> hide #!7 models
> hide #!6 models
> show #!7 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> save "/Users/chenxi/Desktop/RH-figure/model align/rhdc+7wlt.png" width 2000
> height 1237 supersample 3 transparentBackground true
> save "/Users/chenxi/Desktop/RH-figure/model align/model-align.cxs"
> includeMaps true
> hide #!2 models
> show #!1 models
> hide #!7 models
> show #!3 models
> select #1,3: 2490-2547
3012 atoms, 3066 bonds, 348 residues, 2 models selected
> ui tool show Matchmaker
> matchmaker #3/A#3/B#3/C & sel to #1/A#1/B#1/C & sel pairing ss ssFraction
> false
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker 7wlu-rechain, chain A (#1) with rhlf-0814, chain A (#3), sequence
alignment score = 301
Matchmaker 7wlu-rechain, chain C (#1) with rhlf-0814, chain C (#3), sequence
alignment score = 301
Matchmaker 7wlu-rechain, chain B (#1) with rhlf-0814, chain B (#3), sequence
alignment score = 301
RMSD between 159 pruned atom pairs is 1.210 angstroms; (across all 174 pairs:
1.320)
> select add #1
36267 atoms, 37077 bonds, 39 pseudobonds, 4671 residues, 3 models selected
> select add #3
69036 atoms, 70599 bonds, 84 pseudobonds, 8943 residues, 4 models selected
> select subtract #1
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> select add #1
69036 atoms, 70599 bonds, 84 pseudobonds, 8943 residues, 4 models selected
> select subtract #1
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> select subtract #3
Nothing selected
> lighting simple
> lighting soft
> ui tool show "Side View"
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf+7wlu.png" width 2000
> height 1237 supersample 3 transparentBackground true
> hide #!1 models
> show #!5 models
> hide #!5 models
> show #!5 models
> lighting soft
> lighting full
> lighting soft
> lighting flat
> lighting soft
> ui tool show "Side View"
> select #3,5: 2490-2547
3006 atoms, 3060 bonds, 348 residues, 2 models selected
> ui tool show Matchmaker
> matchmaker #5/A#5/B#5/C & sel to #3/A#3/B#3/C & sel pairing ss ssFraction
> false
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker rhlf-0814, chain A (#3) with 8ixo.pdb, chain C (#5), sequence
alignment score = 301
Matchmaker rhlf-0814, chain C (#3) with 8ixo.pdb, chain A (#5), sequence
alignment score = 301
Matchmaker rhlf-0814, chain B (#3) with 8ixo.pdb, chain B (#5), sequence
alignment score = 301
RMSD between 7 pruned atom pairs is 0.900 angstroms; (across all 174 pairs:
20.592)
> select ~sel & ##selected
63381 atoms, 64794 bonds, 84 pseudobonds, 8298 residues, 4 models selected
> hide sel cartoons
> select clear
> ui tool show Matchmaker
> matchmaker #5/A#5/B#5/C to #3/A#3/B#3/C pairing ss ssFraction false
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
No secondary-structure guidance used
Gap open | 12
Gap extend | 1
Iteration cutoff | 2
Matchmaker rhlf-0814, chain A (#3) with 8ixo.pdb, chain A (#5), sequence
alignment score = 7062
Matchmaker rhlf-0814, chain B (#3) with 8ixo.pdb, chain B (#5), sequence
alignment score = 7062
Matchmaker rhlf-0814, chain C (#3) with 8ixo.pdb, chain C (#5), sequence
alignment score = 7062
RMSD between 255 pruned atom pairs is 1.217 angstroms; (across all 4116 pairs:
23.493)
> select add #3
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> select add #5
66387 atoms, 67854 bonds, 84 pseudobonds, 8646 residues, 5 models selected
> show sel cartoons
> select subtract #3
32112 atoms, 32799 bonds, 39 pseudobonds, 4200 residues, 3 models selected
> select subtract #5
Nothing selected
> view
> ui tool show "Side View"
> view orient
> turn x 90
> turn y -20
> turn y -5
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf+8ixo.png" width 2000
> height 1237 supersample 3 transparentBackground true
> ui tool show "Side View"
> save "/Users/chenxi/Desktop/RH-figure/model align/rhlf+8ixo.png" width 2000
> height 1237 supersample 3 transparentBackground true
> show #!1 models
> hide #!5 models
> select #1,3: 2116-2213
4872 atoms, 5010 bonds, 588 residues, 2 models selected
> select ~sel & ##selected
64164 atoms, 65589 bonds, 84 pseudobonds, 8355 residues, 4 models selected
> hide sel cartoons
> select #1,3: 2417-2492
3165 atoms, 3246 bonds, 6 pseudobonds, 408 residues, 4 models selected
> show sel cartoons
> hide sel cartoons
> select #1,3: 2465-2492
1281 atoms, 1308 bonds, 168 residues, 2 models selected
> select #1,3: 2476
42 atoms, 36 bonds, 6 residues, 2 models selected
Drag select of 9 residues
> select clear
> select #1,3: 2476
42 atoms, 36 bonds, 6 residues, 2 models selected
> show sel cartoons
> hide sel cartoons
> select #1,3: 2465-2492
1281 atoms, 1308 bonds, 168 residues, 2 models selected
> show sel cartoons
> select clear
> ui tool show "Side View"
Drag select of 3 residues
> select add #3
34275 atoms, 35055 bonds, 45 pseudobonds, 4446 residues, 2 models selected
> select subtract #3
Nothing selected
> select #1,3: 2417-2492
3165 atoms, 3246 bonds, 6 pseudobonds, 408 residues, 4 models selected
> show sel cartoons
> select clear
> show #3.1 models
> show #1.1 models
> ui tool show "Side View"
> select #1,3/A
23012 atoms, 23533 bonds, 28 pseudobonds, 2981 residues, 4 models selected
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> undo
> select #1,3/A,B
46024 atoms, 47066 bonds, 56 pseudobonds, 5962 residues, 4 models selected
> color (#!1,3 & sel) dark gray
> color (#!1,3 & sel) white
> lighting flat
> select clear
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting full
> lighting simple
> lighting soft
> select #1/C:2475
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #1
34761 atoms, 35544 bonds, 39 pseudobonds, 4497 residues, 2 models selected
> select subtract #1
Nothing selected
> ui tool show "Side View"
> save "/Users/chenxi/Desktop/RH-figure/model align/IH-OH-rhlf-7wlu.png" width
> 2000 height 1237 supersample 3 transparentBackground true
> select #1,3: 2214-2465
11316 atoms, 11589 bonds, 15 pseudobonds, 1428 residues, 4 models selected
> select ~sel & ##selected
57720 atoms, 59010 bonds, 69 pseudobonds, 7515 residues, 4 models selected
> hide sel cartoons
> select #1,3: 2214-2465
11316 atoms, 11589 bonds, 15 pseudobonds, 1428 residues, 4 models selected
> show sel cartoons
> select #1,3: 2200-2470
12258 atoms, 12567 bonds, 15 pseudobonds, 1542 residues, 4 models selected
> show sel cartoons
> select #1,3: 2200-2476
12516 atoms, 12825 bonds, 15 pseudobonds, 1578 residues, 4 models selected
> show sel cartoons
> select clear
> select #1,3: 2185-2492
13977 atoms, 14325 bonds, 15 pseudobonds, 1764 residues, 4 models selected
> show sel cartoons
> select clear
> save "/Users/chenxi/Desktop/RH-figure/model align/capside-rhlf-7wlu.png"
> width 2000 height 1237 supersample 3 transparentBackground true
> view orient
> turn y 90
> turn z 90
> turn y 90
> turn x 90
> turn z 90
> view orient
> turn z 90
> view orient
> turn x 90
> turn y 90
> turn x 90
> ui tool show "Side View"
> save "/Users/chenxi/Desktop/RH-figure/model align/captop-rhlf-7wlu.png"
> width 2000 height 1237 supersample 3 transparentBackground true
> hide #1.1 models
> hide #3.1 models
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac14,2
Model Number: MLXY3CH/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 11881.140.96
OS Loader Version: 11881.140.96
Software:
System Software Overview:
System Version: macOS 15.6 (24G84)
Kernel Version: Darwin 24.6.0
Time since boot: 17天13小时28分钟
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
YOGA27_APH8:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 1280 x 720 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 3 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 3 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
