![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 8 weeks ago
Closed 7 weeks ago
#18651 closed defect (duplicate)
Crash moving window between screens
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.6-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
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{
"uptime" : 340000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 503,
"deployVersion" : 210,
"modelCode" : "Mac15,13",
"coalitionID" : 55738,
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"build" : "24G84",
"releaseType" : "User"
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"captureTime" : "2025-08-27 14:57:59.5887 +0100",
"codeSigningMonitor" : 1,
"incident" : "F0E48AD3-E006-4555-8D4D-78667CF10A1F",
"pid" : 62331,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-08-27 11:34:30.6863 +0100",
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"procExitAbsTime" : 8284746183938,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
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"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "92D0E115-758E-5E01-FC4B-62B1938DC61C",
"appleIntelligenceStatus" : {"reasons":["siriAssetIsNotReady","assetIsNotReady","notOptedIn"],"state":"unavailable"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
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"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
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"vmSummary" : "ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=2.9G written=2552K(0%) resident=2008K(0%) swapped_out=544K(0%) unallocated=2.9G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG image 624K 36 \nColorSync 608K 32 \nCoreAnimation 1840K 100 \nCoreGraphics 80K 5 \nCoreServices 624K 2 \nCoreUI image data 4960K 38 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 2.1G 121 \nMALLOC guard page 288K 18 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 720K 45 \nStack 367.0M 46 \nStack Guard 56.0M 1 \nVM_ALLOCATE 333.8M 230 \nVM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated)\n__AUTH 5520K 696 \n__AUTH_CONST 77.4M 943 \n__CTF 824 1 \n__DATA 34.0M 1084 \n__DATA_CONST 36.9M 1103 \n__DATA_DIRTY 2777K 342 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 647.8M 154 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1117 \n__TEXT (graphics) 4288K 6 \n__TPRO_CONST 128K 2 \ndyld private memory 3232K 27 \nmapped file 289.6M 65 \npage table in kernel 2008K 1 \nshared memory 3184K 26 \n=========== ======= ======= \nTOTAL 5.4G 6260 \nTOTAL, minus reserved VM space 5.3G 6260 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "eb00b3629f07cfd7a69a8d1fe6eac93f1893f8f7",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "64628732bf2f5257dedc8988",
"factorPackIds" : {
},
"deploymentId" : 240000001
},
{
"rolloutId" : "67181b10c68c361a728c7cfa",
"factorPackIds" : {
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}
===== Log before crash start =====
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/pil25yed/Desktop/NRC0+0504_Mau.cxs
Log from Wed Aug 27 14:57:51 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/pil25yed/Downloads/fold_lsnrc0_ls0504_rep4/fold_lsnrc0_ls0504_rep4_model_0.cif
Chain information for fold_lsnrc0_ls0504_rep4_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file
> /Users/pil25yed/Downloads/fold_lsnrc0_ls0504_rep4/fold_lsnrc0_ls0504_rep4_full_data_0.json
> color /A:313 lime
> color /A:320 magenta
> alphafold pae #1 colorDomains true
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting shadows false
> lighting shadows true
> lighting flat
> lighting full
[Repeated 2 time(s)]
> ui tool show "Side View"
[Repeated 1 time(s)]
> show cartoons
[Repeated 1 time(s)]
> hide cartoons
> show cartoons
> show surfaces
> hide surfaces
[Repeated 2 time(s)]
> show surfaces
> hide surfaces
> hide atoms
> show atoms
> hide atoms
> alphafold pae #1 colorDomains true
[Repeated 1 time(s)]
> color bfactor #1 palette alphafold
14332 atoms, 1775 residues, 2 surfaces, atom bfactor range 16.7 to 93.6
> alphafold pae #1 colorDomains true
> color bfactor #1 palette alphafold
14332 atoms, 1775 residues, 2 surfaces, atom bfactor range 16.7 to 93.6
> alphafold pae #1 colorDomains true
> select #1/a:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #1
14332 atoms, 14640 bonds, 1775 residues, 2 models selected
> color sel bychain
> lighting soft
> graphics silhouettes false
> select subtract #1
2 models selected
> select #1/a:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/b:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/b:156,162
16 atoms, 14 bonds, 2 residues, 1 model selected
> color (#!1 & sel) red
> show sel atoms
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file
> /Users/pil25yed/Downloads/fold_lsnrc0_ls0504_rep4/fold_lsnrc0_ls0504_rep4_full_data_0.json
> color bfactor #1 palette alphafold
14332 atoms, 1775 residues, 2 surfaces, atom bfactor range 16.7 to 93.6
> hide sel atoms
> set bgColor white
> graphics silhouettes true
> select add #1
14332 atoms, 14640 bonds, 1775 residues, 2 models selected
> select subtract #1
2 models selected
> save /Users/pil25yed/Desktop/image1.png supersample 3
> select add #1
14332 atoms, 14640 bonds, 1775 residues, 1 model selected
> color sel bychain
> select subtract #1
2 models selected
> save /Users/pil25yed/Desktop/image2.png supersample 3
> select #1/a
7238 atoms, 7393 bonds, 896 residues, 1 model selected
> select #1/a:82-261
1456 atoms, 1480 bonds, 180 residues, 1 model selected
> select #1/a:82-270
1532 atoms, 1557 bonds, 189 residues, 1 model selected
> color (#!1 & sel) forest green
> select #1/b:82-270
1543 atoms, 1571 bonds, 189 residues, 1 model selected
> select #1/b:98-261
1338 atoms, 1363 bonds, 164 residues, 1 model selected
> select #1/b:105-261
1282 atoms, 1306 bonds, 157 residues, 1 model selected
> select #1/b:110-261
1243 atoms, 1267 bonds, 152 residues, 1 model selected
> color (#!1 & sel) cornflower blue
> select #1/b:1-109
904 atoms, 919 bonds, 109 residues, 1 model selected
> color (#!1 & sel) gray
> color (#!1 & sel) white
> color (#!1 & sel) light gray
> select #1/b:262-486
1839 atoms, 1886 bonds, 225 residues, 1 model selected
> select #1/b:262-475
1748 atoms, 1792 bonds, 214 residues, 1 model selected
> select #1/b:262-470
1717 atoms, 1761 bonds, 209 residues, 1 model selected
> select #1/b:262-473
1738 atoms, 1782 bonds, 212 residues, 1 model selected
> color (#!1 & sel) light gray
[Repeated 1 time(s)]
> select ~sel & ##selected
12594 atoms, 12858 bonds, 1563 residues, 1 model selected
> select #1/a
7238 atoms, 7393 bonds, 896 residues, 1 model selected
> select #1/a:137-306
1364 atoms, 1388 bonds, 170 residues, 1 model selected
> color (#!1 & sel) magenta
> color (#!1 & sel) red
> select #1/a:137-290
1241 atoms, 1265 bonds, 154 residues, 1 model selected
> select #1/a:150-306
1264 atoms, 1288 bonds, 157 residues, 1 model selected
> select #1/a:160-306
1185 atoms, 1208 bonds, 147 residues, 1 model selected
> select #1/a:1-159
1301 atoms, 1318 bonds, 159 residues, 1 model selected
> color (#!1 & sel) light gray
> select #1/a:307-500
1572 atoms, 1607 bonds, 194 residues, 1 model selected
> select #1/a:307-495
1528 atoms, 1562 bonds, 189 residues, 1 model selected
> color (#!1 & sel) light gray
> select #1/a:496-897
3224 atoms, 3302 bonds, 401 residues, 1 model selected
> select #1/a:157-160
26 atoms, 25 bonds, 4 residues, 1 model selected
> color (#!1 & sel) red
> select #1/a:157-316
1291 atoms, 1319 bonds, 160 residues, 1 model selected
> color (#!1 & sel) red
> select add #1
14332 atoms, 14640 bonds, 1775 residues, 2 models selected
> select subtract #1
2 models selected
> savepos front
Unknown command: savepos front
> ~savepos view1
Unknown command: ~savepos view1
> ~savepos [view1]
Unknown command: ~savepos [view1]
> save view1 positions
Cannot determine format for 'view1'
> save view1 #1 positions
Cannot determine format for 'view1'
> save view1.positions #1 positions
Expected a keyword
> save /Users/pil25yed/Desktop/NRC0+0504_Mau.cxs
——— End of log from Wed Aug 27 14:57:51 2025 ———
opened ChimeraX session
> select #1/a:
Expected an objects specifier or a keyword
> select #1/a
7238 atoms, 7393 bonds, 896 residues, 1 model selected
> select #1/a purple
Expected a keyword
> select #1/a
7238 atoms, 7393 bonds, 896 residues, 1 model selected
> purple
Unknown command: purple
> select #1/a violet
Expected a keyword
> select #1/a: violet
Nothing selected
> select #1/A: violet
Nothing selected
> select #1/A
7238 atoms, 7393 bonds, 896 residues, 1 model selected
> color #1/A
> color #1/A violet
> color #1/A purple
> color #1/b green
> color #1/b: 101-261 orange
> color #1/b: 1-109 lighgrey
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #1/b: 1-109 light gray
> color #1/b: 262-473 light gray
> color #1/b: 1-149 light gray
> color #1/b: 307-495 light gray
> color #1/b green
> color #1/b: 101-261 orange
> color #1/b: 1-109 light gray
> color #1/b: 262-473 light gray
> color #1/A: 1-149 light gray
> color #1/A: 307-495 light gray
> color #1/A: 150-306 teal
> color #1/A Light teal
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #1/A aqua
> color #1/b aqua
> color #1/a lavender
> color #1/a Amethyst
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #1/a Orchid
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #1/a Periwinkle
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #1/a #9B5DE5
> color #1/b: 101-261 Teal
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #1/b: 101-261 #009688
> color #1/b: 1-109 light gray
> color #1/b: 262-473 light gray
> color #1/A: 1-149 light gray
> color #1/A: 307-495 light gray
> color #1/A: 150-306 #7E57C2
> select #1/A: 150-306
1264 atoms, 1288 bonds, 157 residues, 1 model selected
> color #1/A: 150-306 #8E82FE
> select add #1
14332 atoms, 14640 bonds, 1775 residues, 2 models selected
> select subtract #1
2 models selected
> color #1/a lavender
> color #1/a #9B5DE5
> color #1/a violet
> color #1/A: 1-149 light gray
> color #1/A: 307-495 light gray
> color #1/A: 150-306 #9B5DE5
> color #1/A: 150-306 purple
> save /Users/pil25yed/Desktop/Maian_Session_Poster_NoCaSS_Panel4.cxs
> color #1/A: 150-306 #648fff
Alignment identifier is 1/A
Alignment identifier is 1/B
Drag select of 159 residues
> select clear
> color #1/A #785ef0
> color #1/A: 1-149 light gray
> color #1/A: 307-495 light gray
> color #1/A: 150-306 #648fff
> color #1/A: 150-306 #40567c
> color #1/A: 150-306 #222766
> color #1/b #dc2680
> color #1/b: 1-109 light gray
> color #1/b: 262-473 light gray
> color #1/b: 101-261 #fe6200
> save /Users/pil25yed/Desktop/Maian_Session_Poster_NoCaSS_Panel4_v2.cxs
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file
> /Users/pil25yed/Downloads/fold_lsnrc0_ls0504_rep4/fold_lsnrc0_ls0504_rep4_full_data_0.json
> save /Users/pil25yed/Desktop/Maian_Session_Poster_NoCaSS_Panel4_v2.cxs
> name view v1
"v1": invalid atom specifier
> view v1
Expected an objects specifier or a view name or a keyword
> view name v1
> v1
Unknown command: v1
> vr
VR is not supported by the Mac operating system
> view v1
> show surfaces
> interfaces ~solvent
1 buried areas: A B 2006
> alphafold contacts #1/a toAtoms #1/b distance 3.5
Found 34 residue or atom pairs within distance 3.5
> hide surfaces
> show surfaces
> color (#!1 & sel) orange red
> color (#!1 & sel) red
> select clear
> alphafold contacts #1/a toAtoms #1/b distance 3.5
Found 0 residue or atom pairs within distance 3.5
> alphafold contacts #1/a toAtoms #1/b distance 3.5
Found 34 residue or atom pairs within distance 3.5
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/pil25yed/Desktop/movie1.mp4
Movie saved to /Users/pil25yed/Desktop/movie1.mp4
> save
> /Users/pil25yed/Desktop/Maian_Session_Poster_NoCaSS_Panel4_v3_Exploded.cxs
> save /Users/pil25yed/Desktop/image1.png supersample 3
> hide surfaces
> show surfaces
> color bfactor #1 palette alphafold
14332 atoms, 1775 residues, 2 surfaces, atom bfactor range 16.7 to 93.6
> hide surfaces
> open
> /Users/pil25yed/Desktop/Maian_Session_Poster_NoCaSS_Panel4_v3_Exploded.cxs
opened ChimeraX session
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right rotate
> save /Users/pil25yed/Desktop/image2.png supersample 3
> save /Users/pil25yed/Desktop/image3.png supersample 3
> interfaces ~solvent
0 buried areas:
> interfaces ~solvent
0 buried areas:
> open /Users/pil25yed/Desktop/Maian_Session_Poster_NoCaSS_Panel4_v2.cxs
opened ChimeraX session
> show surfaces
> interfaces ~solvent
1 buried areas: A B 2006
> alphafold contacts #1/a toAtoms #1/b distance 3.5
Structure fold_lsnrc0_ls0504_rep4_model_0.cif #1 does not have PAE data opened
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file
> /Users/pil25yed/Downloads/fold_lsnrc0_ls0504_rep4/fold_lsnrc0_ls0504_rep4_full_data_0.json
> alphafold contacts #1/a toAtoms #1/b distance 3.5
Found 34 residue or atom pairs within distance 3.5
> color (#!1 & sel) red
> save
> /Users/pil25yed/Desktop/Maian_Session_Poster_NoCaSS_Panel4_v3_unExploded.cxs
> select clear
> save /Users/pil25yed/Desktop/image4.png supersample 3
> alphafold contacts #1/a toAtoms #1/b distance 3.5
Found 34 residue or atom pairs within distance 3.5
> ui mousemode right zoom
> save /Users/pil25yed/Desktop/image5.png supersample 3
> save /Users/pil25yed/Desktop/image6.png supersample 3
> open
> /Users/pil25yed/TSL/Conferences/2025/NoCass/Poster/Resources/Chimera/Maian_Session_Poster_NoCaSS_Panel4_v2.cxs
opened ChimeraX session
> select #1/b: 156
8 atoms, 7 bonds, 1 residue, 1 model selected
> color (#!1 & sel) hot pink
> color (#!1 & sel) cyan
> show sel atoms
> ui mousemode right translate
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> view matrix models #1,1,0,0,-11.288,0,1,0,-2.7417,0,0,1,42.728
> ui mousemode right "translate selected models"
> view matrix models #1,1,0,0,-16.536,0,1,0,-1.3039,0,0,1,43.084
> select /B:121-160
315 atoms, 319 bonds, 40 residues, 1 model selected
> select #1/b: 162
8 atoms, 7 bonds, 1 residue, 1 model selected
> color (#!1 & sel) cyan
> hide sel atoms
> show sel atoms
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> style sel ball
Changed 8 atom styles
> style sel ball
Changed 8 atom styles
> undo
> save
> /Users/pil25yed/TSL/Conferences/2025/NoCass/Poster/Resources/Chimera/Maian_Session_Poster_NoCaSS_Panel6.cxs
> save /Users/pil25yed/Desktop/image1.png supersample 3
> select add #1
14332 atoms, 14640 bonds, 1775 residues, 2 models selected
> select subtract #1
2 models selected
> save
> /Users/pil25yed/TSL/Conferences/2025/NoCass/Poster/Resources/Chimera/Maian_Session_Poster_NoCaSS_Panel6.cxs
> save /Users/pil25yed/Desktop/image1.png supersample 3
> save /Users/pil25yed/Desktop/image2.png supersample 3
> save /Users/pil25yed/Desktop/image3.png supersample 3
> save /Users/pil25yed/Desktop/image4.png supersample 3
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/pil25yed/Desktop/movie1.mp4
Movie saved to /Users/pil25yed/Desktop/movie1.mp4
> movie record supersample 3
> turn y 360 120
> zoom #b:156,162 120
Expected a number > 0 or a keyword
> zoom #1b:156,162 120
Expected a number > 0 or a keyword
> zoom #1/B:156,162 120
Expected a number > 0 or a keyword
> zoom #1/B:156,162 120
Expected a number > 0 or a keyword
> select #1/B:156,162
16 atoms, 14 bonds, 2 residues, 1 model selected
> zoom sel frames 120
Expected a number > 0 or a keyword
> view sel 120
> turn y 360 120 center sel
> movie encode output rotacion_zoom.mp4
Movie saved to rotacion_zoom.mp4
> open
> /Users/pil25yed/TSL/Conferences/2025/NoCass/Poster/Resources/Chimera/Maian_Session_Poster_NoCaSS_Panel6.cxs
opened ChimeraX session
> set bgColor white
> graphics silhouettes true width 2
> movie record supersample 3
> cofr models
Expected 3-tuple of numbers or a keyword
> cofr models 1
Expected 3-tuple of numbers or a keyword
> cofr models:1
Expected 3-tuple of numbers or a keyword
> cofr models #1
Expected 3-tuple of numbers or a keyword
> turn y 360 180 center #1
> select #1/B:156,162
16 atoms, 14 bonds, 2 residues, 1 model selected
> scalebar 1.25 120
Expected a keyword
> scalebar 1.25 120
Expected a keyword
> scalebar 1.25 120
Expected a keyword
> move z -4 120 coordinateSystem screen
Invalid "coordinateSystem" argument: invalid coordinate-system
> move z -8 120 coordinateSystem camera
Invalid "coordinateSystem" argument: invalid coordinate-system
> move z -4 frames 120
> turn y 360 180 center sel
> movie stop
> movie encode output rotacion_zoom.mp4 fps 30 quality high
Expected ',' or a keyword
> movie encode output rotacion_zoom.mp4, fps 30 quality high
Expected ',' or a keyword
> movie encode rotacion_zoom.mp4 fps 30 bitrate 8000
Expected ',' or a keyword
> movie encode output rotacion_zoom.mp4 fps=30 quality=high
Expected ',' or a keyword
> movie encode output rotacion_zoom.mp4 fps 30
Expected ',' or a keyword
> movie encode output rotacion_zoom.mp4
Movie saved to rotacion_zoom.mp4
> open
> /Users/pil25yed/TSL/Conferences/2025/NoCass/Poster/Resources/Chimera/Maian_Session_Poster_NoCaSS_Panel6.cxs
opened ChimeraX session
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac15,13
Model Number: Z1GD000B9B/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 24 GB
System Firmware Version: 11881.140.96
OS Loader Version: 11881.140.96
Software:
System Software Overview:
System Version: macOS 15.6 (24G84)
Kernel Version: Darwin 24.6.0
Time since boot: 17 days, 25 minutes
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2880 x 1864 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
PLE2483H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 7 weeks ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash moving window between screens |
comment:2 by , 7 weeks ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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