Opened 5 months ago

Closed 2 months ago

#17662 closed defect (fixed)

Segmentations: 'chimerax' misspelled

Reported by: chimerax-bug-report@… Owned by: Zach Pearson
Priority: normal Milestone:
Component: DICOM Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.10rc202505130148 (2025-05-13 01:48:57 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10rc202505130148 (2025-05-13)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\Users\hdh27\Desktop\upright_model.mol2 format mol2

Opened upright_model.mol2 containing 1 structure (23 atoms, 25 bonds)  

> set bgColor white

> style ball

Changed 23 atom styles  

> save C:/Users/hdh27/Downloads/MeO-2PACz이거.mol2

> save aligned_PACz.mol2 format mol2 models #1

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 0 models #2

> move y 0 models #2

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 10 models #3

> move y 0 models #3

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 20 models #4

> move y 0 models #4

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 30 models #5

> move y 0 models #5

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 40 models #6

> move y 0 models #6

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 0 models #7

> move y 10 models #7

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 10 models #8

> move y 10 models #8

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 20 models #9

> move y 10 models #9

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 30 models #10

> move y 10 models #10

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 40 models #11

> move y 10 models #11

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 0 models #12

> move y 20 models #12

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 10 models #13

> move y 20 models #13

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 20 models #14

> move y 20 models #14

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 30 models #15

> move y 20 models #15

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 40 models #16

> move y 20 models #16

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 0 models #17

> move y 30 models #17

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 10 models #18

> move y 30 models #18

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 20 models #19

> move y 30 models #19

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 30 models #20

> move y 30 models #20

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 40 models #21

> move y 30 models #21

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 0 models #22

> move y 40 models #22

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 10 models #23

> move y 40 models #23

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 20 models #24

> move y 40 models #24

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 30 models #25

> move y 40 models #25

> open aligned_PACz.mol2

Opened aligned_PACz.mol2 containing 1 structure (23 atoms, 25 bonds)  

> move x 40 models #26

> move y 40 models #26

> shape boxPath width 55 height 1 depth 55 color forestgreen

Missing or invalid "atoms" argument: invalid atoms specifier  

> move z -11 models #100

> select P

26 atoms, 26 residues, 26 models selected  

> info atoms sel

atom id #1/A:1@P idatm_type Pac  
atom id #2/A:1@P idatm_type Pac  
atom id #3/A:1@P idatm_type Pac  
atom id #4/A:1@P idatm_type Pac  
atom id #5/A:1@P idatm_type Pac  
atom id #6/A:1@P idatm_type Pac  
atom id #7/A:1@P idatm_type Pac  
atom id #8/A:1@P idatm_type Pac  
atom id #9/A:1@P idatm_type Pac  
atom id #10/A:1@P idatm_type Pac  
atom id #11/A:1@P idatm_type Pac  
atom id #12/A:1@P idatm_type Pac  
atom id #13/A:1@P idatm_type Pac  
atom id #14/A:1@P idatm_type Pac  
atom id #15/A:1@P idatm_type Pac  
atom id #16/A:1@P idatm_type Pac  
atom id #17/A:1@P idatm_type Pac  
atom id #18/A:1@P idatm_type Pac  
atom id #19/A:1@P idatm_type Pac  
atom id #20/A:1@P idatm_type Pac  
atom id #21/A:1@P idatm_type Pac  
atom id #22/A:1@P idatm_type Pac  
atom id #23/A:1@P idatm_type Pac  
atom id #24/A:1@P idatm_type Pac  
atom id #25/A:1@P idatm_type Pac  
atom id #26/A:1@P idatm_type Pac  

> hide #2 models

> hide #3 models

> hide #4 models

> hide #5 models

> hide #6 models

> hide #26 models

> hide #25 models

> hide #24 models

> hide #23 models

> hide #22 models

> hide #10 models

> hide #11 models

> hide #12 models

> hide #13 models

> hide #14 models

> hide #16 models

> hide #17 models

> hide #18 models

> hide #19 models

> hide #20 models

> hide #21 models

> hide #15 models

> hide #7 models

> hide #8 models

> hide #9 models

> select #1/A:1@@serial_number=-1

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select #1/A:1@@serial_number=-1

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select O

130 atoms, 26 residues, 26 models selected  

> select P

26 atoms, 26 residues, 26 models selected  

> select sel @< 5

371 atoms, 345 bonds, 26 residues, 26 models selected  

> select sel @< 1

371 atoms, 345 bonds, 26 residues, 26 models selected  

> select ligand

Nothing selected  

> select P

26 atoms, 26 residues, 26 models selected  

> select ::name="UNL"

598 atoms, 650 bonds, 26 residues, 26 models selected  

> select phosphonate

104 atoms, 78 bonds, 26 residues, 26 models selected  

> info atoms sel

atom id #1/A:1@P idatm_type Pac  
atom id #1/A:1@@serial_number=-1 idatm_type O3-  
atom id #1/A:1@@serial_number=-1 idatm_type O3-  
atom id #1/A:1@@serial_number=-1 idatm_type O3-  
atom id #2/A:1@P idatm_type Pac  
atom id #2/A:1@@serial_number=-1 idatm_type O3-  
atom id #2/A:1@@serial_number=-1 idatm_type O3-  
atom id #2/A:1@@serial_number=-1 idatm_type O3-  
atom id #3/A:1@P idatm_type Pac  
atom id #3/A:1@@serial_number=-1 idatm_type O3-  
atom id #3/A:1@@serial_number=-1 idatm_type O3-  
atom id #3/A:1@@serial_number=-1 idatm_type O3-  
atom id #4/A:1@P idatm_type Pac  
atom id #4/A:1@@serial_number=-1 idatm_type O3-  
atom id #4/A:1@@serial_number=-1 idatm_type O3-  
atom id #4/A:1@@serial_number=-1 idatm_type O3-  
atom id #5/A:1@P idatm_type Pac  
atom id #5/A:1@@serial_number=-1 idatm_type O3-  
atom id #5/A:1@@serial_number=-1 idatm_type O3-  
atom id #5/A:1@@serial_number=-1 idatm_type O3-  
atom id #6/A:1@P idatm_type Pac  
atom id #6/A:1@@serial_number=-1 idatm_type O3-  
atom id #6/A:1@@serial_number=-1 idatm_type O3-  
atom id #6/A:1@@serial_number=-1 idatm_type O3-  
atom id #7/A:1@P idatm_type Pac  
atom id #7/A:1@@serial_number=-1 idatm_type O3-  
atom id #7/A:1@@serial_number=-1 idatm_type O3-  
atom id #7/A:1@@serial_number=-1 idatm_type O3-  
atom id #8/A:1@P idatm_type Pac  
atom id #8/A:1@@serial_number=-1 idatm_type O3-  
atom id #8/A:1@@serial_number=-1 idatm_type O3-  
atom id #8/A:1@@serial_number=-1 idatm_type O3-  
atom id #9/A:1@P idatm_type Pac  
atom id #9/A:1@@serial_number=-1 idatm_type O3-  
atom id #9/A:1@@serial_number=-1 idatm_type O3-  
atom id #9/A:1@@serial_number=-1 idatm_type O3-  
atom id #10/A:1@P idatm_type Pac  
atom id #10/A:1@@serial_number=-1 idatm_type O3-  
atom id #10/A:1@@serial_number=-1 idatm_type O3-  
atom id #10/A:1@@serial_number=-1 idatm_type O3-  
atom id #11/A:1@P idatm_type Pac  
atom id #11/A:1@@serial_number=-1 idatm_type O3-  
atom id #11/A:1@@serial_number=-1 idatm_type O3-  
atom id #11/A:1@@serial_number=-1 idatm_type O3-  
atom id #12/A:1@P idatm_type Pac  
atom id #12/A:1@@serial_number=-1 idatm_type O3-  
atom id #12/A:1@@serial_number=-1 idatm_type O3-  
atom id #12/A:1@@serial_number=-1 idatm_type O3-  
atom id #13/A:1@P idatm_type Pac  
atom id #13/A:1@@serial_number=-1 idatm_type O3-  
atom id #13/A:1@@serial_number=-1 idatm_type O3-  
atom id #13/A:1@@serial_number=-1 idatm_type O3-  
atom id #14/A:1@P idatm_type Pac  
atom id #14/A:1@@serial_number=-1 idatm_type O3-  
atom id #14/A:1@@serial_number=-1 idatm_type O3-  
atom id #14/A:1@@serial_number=-1 idatm_type O3-  
atom id #15/A:1@P idatm_type Pac  
atom id #15/A:1@@serial_number=-1 idatm_type O3-  
atom id #15/A:1@@serial_number=-1 idatm_type O3-  
atom id #15/A:1@@serial_number=-1 idatm_type O3-  
atom id #16/A:1@P idatm_type Pac  
atom id #16/A:1@@serial_number=-1 idatm_type O3-  
atom id #16/A:1@@serial_number=-1 idatm_type O3-  
atom id #16/A:1@@serial_number=-1 idatm_type O3-  
atom id #17/A:1@P idatm_type Pac  
atom id #17/A:1@@serial_number=-1 idatm_type O3-  
atom id #17/A:1@@serial_number=-1 idatm_type O3-  
atom id #17/A:1@@serial_number=-1 idatm_type O3-  
atom id #18/A:1@P idatm_type Pac  
atom id #18/A:1@@serial_number=-1 idatm_type O3-  
atom id #18/A:1@@serial_number=-1 idatm_type O3-  
atom id #18/A:1@@serial_number=-1 idatm_type O3-  
atom id #19/A:1@P idatm_type Pac  
atom id #19/A:1@@serial_number=-1 idatm_type O3-  
atom id #19/A:1@@serial_number=-1 idatm_type O3-  
atom id #19/A:1@@serial_number=-1 idatm_type O3-  
atom id #20/A:1@P idatm_type Pac  
atom id #20/A:1@@serial_number=-1 idatm_type O3-  
atom id #20/A:1@@serial_number=-1 idatm_type O3-  
atom id #20/A:1@@serial_number=-1 idatm_type O3-  
atom id #21/A:1@P idatm_type Pac  
atom id #21/A:1@@serial_number=-1 idatm_type O3-  
atom id #21/A:1@@serial_number=-1 idatm_type O3-  
atom id #21/A:1@@serial_number=-1 idatm_type O3-  
atom id #22/A:1@P idatm_type Pac  
atom id #22/A:1@@serial_number=-1 idatm_type O3-  
atom id #22/A:1@@serial_number=-1 idatm_type O3-  
atom id #22/A:1@@serial_number=-1 idatm_type O3-  
atom id #23/A:1@P idatm_type Pac  
atom id #23/A:1@@serial_number=-1 idatm_type O3-  
atom id #23/A:1@@serial_number=-1 idatm_type O3-  
atom id #23/A:1@@serial_number=-1 idatm_type O3-  
atom id #24/A:1@P idatm_type Pac  
atom id #24/A:1@@serial_number=-1 idatm_type O3-  
atom id #24/A:1@@serial_number=-1 idatm_type O3-  
atom id #24/A:1@@serial_number=-1 idatm_type O3-  
atom id #25/A:1@P idatm_type Pac  
atom id #25/A:1@@serial_number=-1 idatm_type O3-  
atom id #25/A:1@@serial_number=-1 idatm_type O3-  
atom id #25/A:1@@serial_number=-1 idatm_type O3-  
atom id #26/A:1@P idatm_type Pac  
atom id #26/A:1@@serial_number=-1 idatm_type O3-  
atom id #26/A:1@@serial_number=-1 idatm_type O3-  
atom id #26/A:1@@serial_number=-1 idatm_type O3-  

> view #8 clip false

> hide #1 models

> show #2 models

> close #8

> close

> open C:\Users\hdh27\Downloads\MeO-2PACz이거.mol2 format mol2

Opened MeO-2PACz이거.mol2 containing 1 structure (23 atoms, 25 bonds)  

> style ball

Changed 23 atom styles  

> select phosphonate

4 atoms, 3 bonds, 1 residue, 1 model selected  

> info atoms sel

atom id /A:1@P idatm_type Pac  
atom id /A:1@@serial_number=-1 idatm_type O3-  
atom id /A:1@@serial_number=-1 idatm_type O3-  
atom id /A:1@@serial_number=-1 idatm_type O3-  

> showattr coord

Unknown command: showattr coord  

> Favorites → Command Line

Unknown command: Favorites → Command Line  

> toolshed install /full/path/to/seqcrow-1.8.20-py3-none-any.whl

Missing or invalid "bundleNames" argument: Expected a bundle file name or a
bundle name  

> open C:/Users/hdh27/Downloads/seqcrow-1.8.20-py3-none-any.whl

Unrecognized file suffix '.whl'  

> toolshed show

> Ctrl + `

Unknown command: Ctrl + `  

> ui tool show "Command Line Interface"

[Repeated 1 time(s)]

> toolshed install "C:/Users/hdh2747/Downloads/seqcrow-1.8.20-py3-none-
> any.whl"

Missing or invalid "bundleNames" argument: Expected a bundle file name or a
bundle name  

> `

Unknown command: `  

> toolshed install "C:/Users/hdh2747/Downloads/seqcrow-1.8.20-py3-none-
> any.whl"

Missing or invalid "bundleNames" argument: Expected a bundle file name or a
bundle name  

> toolshed install "C:/Users/hdh2747/Downloads/seqcrow-1.8.20-py3-none-
> any.whl"

Missing or invalid "bundleNames" argument: Expected a bundle file name or a
bundle name  

> toolshed show

Downloading bundle seqcrow-1.8.20-py3-none-any.whl  
Installed SEQCROW (1.8.20)  

> define plane po3 atoms sel

Missing or invalid "atoms" argument: invalid atoms specifier  

> "

incomplete quoted text  

> define plane po3 atoms sel

Missing or invalid "atoms" argument: invalid atoms specifier  

> ~select

Nothing selected  

> select clear

> select /A:1@P

1 atom, 1 residue, 1 model selected  

> select /A:1@@serial_number=-1

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select clear

> select /A:1@P

1 atom, 1 residue, 1 model selected  

> select /A:1@@serial_number=-1

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /A:1@P

1 atom, 1 residue, 1 model selected  

> ui tool show Toolbar

> select /A:1@@serial_number=-1

23 atoms, 25 bonds, 1 residue, 1 model selected  

> ~select

Nothing selected  

> ui tool show Toolbar

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\toolbar\tool.py", line 230, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\segmentations\bundle.py", line 68, in run_provider  
from chmerax.segmentations.actions import run_toolbar_button  
ModuleNotFoundError: No module named 'chmerax'  
  
ModuleNotFoundError: No module named 'chmerax'  
  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\segmentations\bundle.py", line 68, in run_provider  
from chmerax.segmentations.actions import run_toolbar_button  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\toolbar\tool.py", line 230, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\segmentations\bundle.py", line 68, in run_provider  
from chmerax.segmentations.actions import run_toolbar_button  
ModuleNotFoundError: No module named 'chmerax'  
  
ModuleNotFoundError: No module named 'chmerax'  
  
File "C:\Program Files\ChimeraX 1.10rc202505130148\bin\Lib\site-
packages\chimerax\segmentations\bundle.py", line 68, in run_provider  
from chmerax.segmentations.actions import run_toolbar_button  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 32.0.101.5542
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel

Python: 3.11.4
Locale: ko_KR.cp949
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: HP
Model: HP Laptop 15-fd0xxx
OS: Microsoft Windows 11 Home (Build 26100)
Memory: 16,806,326,272
MaxProcessMemory: 137,438,953,344
CPU: 12 13th Gen Intel(R) Core(TM) i5-1334U
OSLanguage: ko-KR

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.3.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.3.2
    build: 1.2.2.post1
    certifi: 2025.4.26
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.3
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.6
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.2.6
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10rc202505130148
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.8.0
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.0
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.13.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.5.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.3.5
    pytest-cov: 6.1.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 26.4.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    Send2Trash: 1.8.3
    SEQCROW: 1.8.20
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.13.2
    tzdata: 2025.2
    urllib3: 2.4.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1

Change History (2)

comment:1 by pett, 5 months ago

Component: UnassignedDICOM
Owner: set to Zach Pearson
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionSegmentations: 'chimerax' misspelled

comment:2 by Zach Pearson, 2 months ago

Resolution: fixed
Status: assignedclosed

Fixed in daily builds.

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