Opened 2 months ago
Closed 2 months ago
#18724 closed defect (duplicate)
Segmentation cursor is None
| Reported by: | Owned by: | Zach Pearson | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | DICOM | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.10.dev202502110310 (2025-02-11 03:10:01 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.10.dev202502110310 (2025-02-11)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:/Users/bdavoudinasab/City of Hope Dropbox/Behnaz Davoudinasab/Behnaz
> Davoudinasab/Behnaz Davoudinasab/Projects/KSHV-gHgL/CryoEM- Krios data
> processing/gHgL-4C12Fab complex/gHgL-4C12-refinment-
> phenix/REA76B~1/GHGL4C~1.PDB"
Chain information for GHGL4C~1.PDB #1
---
Chain | Description
A | No description available
B | No description available
H | No description available
L | No description available
> dssp #1
Computing secondary structure
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "molecular surfaces" "chain id coloring (opaque)"
Using preset: Molecular Surfaces / Chain ID Coloring (Opaque)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color bychain targ s trans 0
> preset "molecular surfaces" "atomic coloring (transparent)"
Using preset: Molecular Surfaces / Atomic Coloring (Transparent)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color fromatoms targ s trans 70
> preset "molecular surfaces" "chain id coloring (opaque)"
Using preset: Molecular Surfaces / Chain ID Coloring (Opaque)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color bychain targ s trans 0
> open
> "C:/Users/bdavoudinasab/Downloads/cryosparc_P4_J1687_007_volume_map_sharp
> (1).mrc"
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc as #2, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 2, values float32
> hide #!1 models
> hide #1.1 models
> hide #1.2 models
> hide #1.3 models
> hide #1.4 models
> hide #1.5 models
> surface dust #2 size 8.32
> preset "molecular surfaces" "chain id coloring (opaque)"
Using preset: Molecular Surfaces / Chain ID Coloring (Opaque)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color bychain targ s trans 0
> ui tool show "Surface Zone"
> surface zone #2 nearAtoms #1 distance 4.99
> surface unzone #2
> surface zone #2 nearAtoms #1 distance 4.99
> hide #!2 models
> show #!2 models
> hide #2.1 models
> show #2.1 models
> volume #2 level -0.3565
> volume #2 level 0.8639
> close #2
> open
> "C:/Users/bdavoudinasab/Downloads/cryosparc_P4_J1687_007_volume_map_sharp
> (1).mrc"
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc as #2, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 2, values float32
> surface dust #2 size 8.32
> ui tool show "Color Zone"
> color zone #2 near #1 distance 4.99
> color single #2
> color zone #2 near #1 distance 4.99
> volume splitbyzone #2
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 0 as #3.1, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 1 as #3.2, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 2 as #3.3, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 3 as #3.4, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 4 as #3.5, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
> hide #!3.1 models
> show #!3.1 models
> hide #!3 models
> hide #!3.1 models
> show #!3 models
> show #!3.1 models
> hide #!3.1 models
> hide #!3.2 models
> show #!3.2 models
> hide #!3.2 models
> hide #!3.4 models
> close #3
> close #1
> show #!2 models
> select add #2
2 models selected
> color #2 black models
> color #2 #969696ff models
> color #2 #b5b5b5ff models
> lighting full
> lighting soft
> lighting simple
> ui tool show "Surface Zone"
Color zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic
models, 1 maps.
> open "C:/Users/bdavoudinasab/City of Hope Dropbox/Behnaz Davoudinasab/Behnaz
> Davoudinasab/Behnaz Davoudinasab/Projects/KSHV-gHgL/CryoEM- Krios data
> processing/gHgL-4C12Fab complex/gHgL-4C12-refinment-
> phenix/REA76B~1/GHGL4C~1.PDB"
Chain information for GHGL4C~1.PDB #1
---
Chain | Description
A | No description available
B | No description available
H | No description available
L | No description available
> select add #1
9517 atoms, 9763 bonds, 3 pseudobonds, 1209 residues, 4 models selected
> close #1
> open
> C:/Users/bdavoudinasab/CITYOF~1/BEHNAZ~1/BEHNAZ~1/BEHNAZ~1/Projects/KSHV-G~1/CRYOEM~3/GH7FAF~1/GHGL-4~4/RE73F1~1/GHGL-4~1.PDB
Chain information for GHGL-4~1.PDB #1
---
Chain | Description
A | No description available
B | No description available
H | No description available
L | No description available
> ui tool show "Fit in Map"
> fitmap #1 inMap #2
Fit molecule GHGL-4~1.PDB (#1) to map cryosparc_P4_J1687_007_volume_map_sharp
(1).mrc (#2) using 9517 atoms
average map value = 0.3843, steps = 92
shifted from previous position = 0.342
rotated from previous position = 2.27 degrees
atoms outside contour = 2199, contour level = 0.041246
Position of GHGL-4~1.PDB (#1) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950118 0.02370864 0.02086382 -6.41056626
-0.02320522 0.99944143 -0.02404868 7.11453247
-0.02142233 0.02355254 0.99949305 -0.64499682
Axis 0.60187698 0.53467239 -0.59318592
Axis point 0.00000000 25.31811875 287.95444441
Rotation angle (degrees) 2.26629378
Shift along axis 0.32817486
> fitmap #1 inMap #2
Fit molecule GHGL-4~1.PDB (#1) to map cryosparc_P4_J1687_007_volume_map_sharp
(1).mrc (#2) using 9517 atoms
average map value = 0.3843, steps = 40
shifted from previous position = 0.00616
rotated from previous position = 0.00611 degrees
atoms outside contour = 2199, contour level = 0.041246
Position of GHGL-4~1.PDB (#1) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950269 0.02369019 0.02081217 -6.39630878
-0.02318605 0.99943968 -0.02413976 7.12859207
-0.02137239 0.02364521 0.99949193 -0.66393237
Axis 0.60393887 0.53315706 -0.59245370
Axis point 0.00000000 25.95988608 287.39121178
Rotation angle (degrees) 2.26727565
Shift along axis 0.33102894
> fitmap #1 inMap #2
Fit molecule GHGL-4~1.PDB (#1) to map cryosparc_P4_J1687_007_volume_map_sharp
(1).mrc (#2) using 9517 atoms
average map value = 0.3843, steps = 40
shifted from previous position = 0.00313
rotated from previous position = 0.00417 degrees
atoms outside contour = 2200, contour level = 0.041246
Position of GHGL-4~1.PDB (#1) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950158 0.02375462 0.02079223 -6.40179585
-0.02325033 0.99943749 -0.02416859 7.14339221
-0.02135465 0.02367311 0.99949165 -0.66843510
Axis 0.60396490 0.53207227 -0.59340163
Axis point 0.00000000 26.11659050 287.67053751
Rotation angle (degrees) 2.26987081
Shift along axis 0.33099139
> fitmap #1 inMap #2
Fit molecule GHGL-4~1.PDB (#1) to map cryosparc_P4_J1687_007_volume_map_sharp
(1).mrc (#2) using 9517 atoms
average map value = 0.3843, steps = 44
shifted from previous position = 0.00378
rotated from previous position = 0.00602 degrees
atoms outside contour = 2199, contour level = 0.041246
Position of GHGL-4~1.PDB (#1) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950203 0.02369244 0.02084117 -6.40113067
-0.02318850 0.99944063 -0.02409811 7.12378813
-0.02140045 0.02360284 0.99949233 -0.65387303
Axis 0.60301008 0.53399618 -0.59264401
Axis point 0.00000000 25.56339606 287.67367239
Rotation angle (degrees) 2.26677485
Shift along axis 0.33164322
> fitmap #1 inMap #2
Fit molecule GHGL-4~1.PDB (#1) to map cryosparc_P4_J1687_007_volume_map_sharp
(1).mrc (#2) using 9517 atoms
average map value = 0.3843, steps = 44
shifted from previous position = 0.0128
rotated from previous position = 0.00428 degrees
atoms outside contour = 2207, contour level = 0.041246
Position of GHGL-4~1.PDB (#1) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99949970 0.02375072 0.02088679 -6.42121238
-0.02324547 0.99943905 -0.02410883 7.12436609
-0.02144767 0.02361125 0.99949112 -0.64098621
Axis 0.60226639 0.53429546 -0.59313030
Axis point 0.00000000 25.32695413 287.84021656
Rotation angle (degrees) 2.27048618
Shift along axis 0.31942438
> color zone #2 near #1 distance 4.99
[Repeated 1 time(s)]
> color zone #2 near #1 distance 0.85
> color zone #2 near #1 distance 4.99
> ui tool show "Color Zone"
> color zone #2 near #1 distance 464.11
[Repeated 2 time(s)]
> color single #2
> volume sel style surface
> volume sel style mesh
> volume sel style surface
> lighting full
> lighting soft
> color zone #2 near #1 distance 2.5
> color zone # near #2 distance 2.5
Missing or invalid "surfaces" argument: invalid surfaces specifier
> color zone #1 near #2 distance 2.5
color zone: No surfaces specified.
> volume resample #6 onGrid #1
> color single #2
> toolshed show
> ui tool show "Surface Color"
Need to color zone map before it can be split
[Repeated 1 time(s)]
> color zone #2 near #1 distance 464.11
> split #1
Split GHGL-4~1.PDB (#1) into 6 models
Chain information for GHGL-4~1.PDB A #1.1
---
Chain | Description
A | No description available
Chain information for GHGL-4~1.PDB B #1.2
---
Chain | Description
B | No description available
Chain information for GHGL-4~1.PDB H #1.3
---
Chain | Description
H | No description available
Chain information for GHGL-4~1.PDB L #1.4
---
Chain | Description
L | No description available
> color zone #2 near #1.1 distance 464.11
> color zone #2 near #1.2 distance 464.11
> color zone #2 near #1.5 distance 464.11
> hide #1.6 models
> hide #1.5 models
> hide #1.4 models
> hide #!1.3 models
> hide #1.2 models
> hide #!1.1 models
> hide #!2 models
> show #!2 models
> volume splitbyzone #2
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 0 as #3.1, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 1 as #3.2, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 2 as #3.3, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc 3 as #3.4, grid size
360,360,360, pixel 0.832, shown at level 0.0412, step 1, values float32
> hide #!3.1 models
> hide #!3.2 models
> hide #!3.3 models
> hide #!3.4 models
> color zone #2 near #1.5 distance 463.15
> color zone #2 near #1.5 distance 461.24
> close #3
> show #!2 models
> color #2.1 #ffaa00ff
> ui tool show "Color Zone"
Need to color zone map before it can be split
> show #!1.1 models
> show #1.2 models
> hide #1.2 models
> show #1.2 models
> show #!1.3 models
> hide #!1 models
> show #!1 models
> hide #2.1 models
> show #1.4 models
> show #1.5 models
> split #2/A
> show #2.1 models
> split #2/A, B, L, H
> hide #!2 models
> show #!2 models
> ui tool show "Surface Color"
> color gradient #2.1 map #2 palette -10,#ff0000:0,#ffffff:10,#0000ff
> outsideColor #808080
Map values for surface "surface": minimum 0.0005646, mean 0.1182, maximum
2.255
> ui tool show "Fit to Segments"
> ui tool show "Segment Map"
> hide #!2 models
> show #!2 models
> volume #2 color #55ff00
> volume #2 color #55aaff
> ui tool show "Surface Zone"
> surface zone #2 nearAtoms #1.1 distance 4.99
[Repeated 2 time(s)]
> surface unzone #2
> surface zone #2 nearAtoms #1.1 distance 4.99
> surface zone #2 nearAtoms #1.2 distance 4.99
> surface zone #2 nearAtoms #1.3 distance 4.99
> surface zone #2 nearAtoms #1.4 distance 4.99
Color zone shortcut requires 1 displayed atomic model and 1 map, got 5 atomic
models, 1 maps.
> hide #1.2 models
> hide #!1.3 models
> hide #1.4 models
> hide #1.5 models
> hide #!1.1 models
> show #!1.1 models
> surface zone #2 nearAtoms #1.4 distance 4.99
> surface zone #2 nearAtoms #1.1 distance 4.99
> color zone #2 near #1.1 distance 4.99
[Repeated 1 time(s)]
> fitmap #1 inMap #2
Fit molecules GHGL-4~1.PDB A (#1.1), GHGL-4~1.PDB B (#1.2), GHGL-4~1.PDB H
(#1.3), GHGL-4~1.PDB L (#1.4), GHGL-4~1.PDB S (#1.5), GHGL-4~1.PDB a (#1.6) to
map cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) using 9517 atoms
average map value = 0.3843, steps = 44
shifted from previous position = 0.0141
rotated from previous position = 0.00784 degrees
atoms outside contour = 2201, contour level = 0.041246
Position of GHGL-4~1.PDB A (#1.1) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950092 0.02380454 0.02076661 -6.40468822
-0.02330130 0.99943682 -0.02414716 7.14778032
-0.02132972 0.02365122 0.99949270 -0.67152957
Axis 0.60336558 0.53138773 -0.59462346
Axis point 0.00000000 26.19514210 288.06609841
Rotation angle (degrees) 2.27006857
Shift along axis 0.33318162
Position of GHGL-4~1.PDB B (#1.2) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950092 0.02380454 0.02076661 -6.40468822
-0.02330130 0.99943682 -0.02414716 7.14778032
-0.02132972 0.02365122 0.99949270 -0.67152957
Axis 0.60336558 0.53138773 -0.59462346
Axis point 0.00000000 26.19514210 288.06609841
Rotation angle (degrees) 2.27006857
Shift along axis 0.33318162
Position of GHGL-4~1.PDB H (#1.3) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950092 0.02380454 0.02076661 -6.40468822
-0.02330130 0.99943682 -0.02414716 7.14778032
-0.02132972 0.02365122 0.99949270 -0.67152957
Axis 0.60336558 0.53138773 -0.59462346
Axis point 0.00000000 26.19514210 288.06609841
Rotation angle (degrees) 2.27006857
Shift along axis 0.33318162
Position of GHGL-4~1.PDB L (#1.4) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950092 0.02380454 0.02076661 -6.40468822
-0.02330130 0.99943682 -0.02414716 7.14778032
-0.02132972 0.02365122 0.99949270 -0.67152957
Axis 0.60336558 0.53138773 -0.59462346
Axis point 0.00000000 26.19514210 288.06609841
Rotation angle (degrees) 2.27006857
Shift along axis 0.33318162
Position of GHGL-4~1.PDB S (#1.5) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950092 0.02380454 0.02076661 -6.40468822
-0.02330130 0.99943682 -0.02414716 7.14778032
-0.02132972 0.02365122 0.99949270 -0.67152957
Axis 0.60336558 0.53138773 -0.59462346
Axis point 0.00000000 26.19514210 288.06609841
Rotation angle (degrees) 2.27006857
Shift along axis 0.33318162
Position of GHGL-4~1.PDB a (#1.6) relative to
cryosparc_P4_J1687_007_volume_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.99950092 0.02380454 0.02076661 -6.40468822
-0.02330130 0.99943682 -0.02414716 7.14778032
-0.02132972 0.02365122 0.99949270 -0.67152957
Axis 0.60336558 0.53138773 -0.59462346
Axis point 0.00000000 26.19514210 288.06609841
Rotation angle (degrees) 2.27006857
Shift along axis 0.33318162
> color zone #2 near #1 distance 2.5
> volume-spec #2
Unknown command: volume-spec #2
> surface unzone #2
> surface dust #2 size 8.32
> vop gaussian #2 sdev 2.5
Opened cryosparc_P4_J1687_007_volume_map_sharp (1).mrc gaussian as #3, grid
size 360,360,360, pixel 0.832, shown at step 1, values float32
> hide #!3 models
> show #!2 models
> volume zone #2 nearAtoms #1.1 range 4.99
[Repeated 2 time(s)]
> color zone #2 near #1.1 distance 4.99
[Repeated 1 time(s)]
> surface unzone #2
> surface dust #2 size 8.32
> transparency sel 50
> volume sel style surface
[Repeated 1 time(s)]
> preset "molecular surfaces" "chain id coloring (opaque)"
Using preset: Molecular Surfaces / Chain ID Coloring (Opaque)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color bychain targ s trans 0
> preset "molecular surfaces" "atomic coloring (transparent)"
Using preset: Molecular Surfaces / Atomic Coloring (Transparent)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color fromatoms targ s trans 70
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "initial styles" "space-filling (chain colors)"
Using preset: Initial Styles / Space-Filling (Chain Colors)
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" "space-filling (chain colors)"
Using preset: Initial Styles / Space-Filling (Chain Colors)
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" cartoon
Using preset: Initial Styles / Cartoon
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> ui tool show Segmentations
Created segmentation sphere cursor with ID #4
Created segmentation sphere cursor with ID #5
Created segmentation sphere cursor with ID #6
> ui view fourup
> close #3
> close #4
> close #6
> hide #5 target m
> hide #!2 models
> show #!2 models
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1167, in
mousePressEvent
self.moveSegmentationPuck(x, y, record_seg=True)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
> segmentations create #2
Opened segmentation 1 of cryosparc_P4_J1687_007_volume_map_sharp (1).mrc as
#3, grid size 360,360,360, pixel 0.832, shown at level 0.501, step 1, values
float64
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1390, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1315, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\ChimeraX 1.10.dev202502110310\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
> close #3
> close #5
> close #2
OpenGL version: 3.3.0 - Build 31.0.101.5382
OpenGL renderer: Intel(R) Graphics
OpenGL vendor: Intel
Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows
Manufacturer: Dell Inc.
Model: Latitude 7450
OS: Microsoft Windows 10 Enterprise (Build 19045)
Memory: 16,597,598,208
MaxProcessMemory: 137,438,953,344
CPU: 14 Intel(R) Core(TM) Ultra 7 165U
OSLanguage: en-US
Installed Packages:
alabaster: 1.0.0
anyio: 4.8.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.2.0
babel: 2.17.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2025.1.31
cftime: 1.6.4.post1
charset-normalizer: 3.4.1
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.19.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.5
ChimeraX-AtomicLibrary: 14.1.13
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10.dev202502110310
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.5.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.7
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.7
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-ProfileGrids: 1.0.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.16
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.43
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.5
contourpy: 1.3.1
coverage: 7.6.11
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.12
decorator: 5.1.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.15.4
fonttools: 4.56.0
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.0.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.5
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.8
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
pluggy: 1.5.0
prompt_toolkit: 3.0.50
psutil: 6.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.1
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.8.0
pytest: 8.3.4
pytest-cov: 6.0.0
python-dateutil: 2.9.0.post0
pytz: 2025.1
pywin32: 306
pyzmq: 26.2.1
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2025.1
urllib3: 2.3.0
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
WMI: 1.5.1
Change History (2)
comment:1 by , 2 months ago
| Component: | Unassigned → DICOM |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Segmentation cursor is None |
comment:2 by , 2 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Duplicate of #17004