![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 months ago
Closed 3 months ago
#18455 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.5-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001f4165f00 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp (total: 59)
{"app_name":"ChimeraX","timestamp":"2025-08-16 03:00:26.00 +0200","app_version":"1.8.0","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.8.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 15.5 (24F74)","roots_installed":0,"name":"ChimeraX","incident_id":"6DD83723-7919-46AF-A96D-6A67A7A5828B"}
{
"uptime" : 1400000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"coalitionID" : 228771,
"osVersion" : {
"train" : "macOS 15.5",
"build" : "24F74",
"releaseType" : "User"
},
"captureTime" : "2025-08-16 02:59:28.7298 +0200",
"codeSigningMonitor" : 1,
"incident" : "6DD83723-7919-46AF-A96D-6A67A7A5828B",
"pid" : 14735,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-08-10 16:18:06.6389 +0200",
"procStartAbsTime" : 29146948746322,
"procExitAbsTime" : 35311057382570,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"1F687402-3271-5C64-B8AE-19BD52A50C71","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "717FFB24-6C14-A8A5-2184-DD1E2993CA38",
"appleIntelligenceStatus" : {"state":"available"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRm+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkZDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "BCBBEB98-23EC-4DA9-9D53-F85E2029A0EE",
"wakeTime" : 39515,
"sleepWakeUUID" : "8DEB7B3D-94E5-42E9-8109-CA1DCAD7173B",
"sip" : "enabled",
"vmRegionInfo" : "0x64c25f908168 is not in any region. \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n UNUSED SPACE AT END",
"exception" : {"codes":"0x0000000000000001, 0x0000e4c25f908168","rawCodes":[1,251523478094184],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000e4c25f908168 -> 0x000064c25f908168 (possible pointer authentication failure)"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":14735},
"vmregioninfo" : "0x64c25f908168 is not in any region. \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n UNUSED SPACE AT END",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":5100698264},{"value":99},{"value":95},{"value":4611791571556212832},{"value":0},{"value":16419860703923596991},{"value":16419860708957925823},{"value":14757395258967641293},{"value":4294967286},{"value":5100698194},{"value":0},{"value":53},{"value":4294967280},{"value":328},{"value":8407179176},{"value":0},{"value":11},{"value":259},{"value":8390074336,"symbolLocation":224,"symbol":"_main_thread"},{"value":0},{"value":1},{"value":4400006704,"symbolLocation":0,"symbol":"faulthandler_handlers"},{"value":8351223808,"symbolLocation":0,"symbol":"OBJC_IVAR_$__NSFullScreenCreateTileDropTargetController._requestedJoinSpace"},{"value":8351223808,"symbolLocation":0,"symbol":"OBJC_IVAR_$__NSFullScreenCreateTileDropTargetController._requestedJoinSpace"},{"value":6},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543468684},"cpsr":{"value":1073745920},"fp":{"value":5100698336},"sp":{"value":5100698304},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543233928,"matchesCrashFrame":1},"far":{"value":0}},"id":28445543,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":37768,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":155},{"imageOffset":26764,"symbol":"pthread_kill","symbolLocation":296,"imageIndex":156},{"imageOffset":265476,"symbol":"raise","symbolLocation":32,"imageIndex":157},{"imageOffset":2417160,"symbol":"faulthandler_fatal_error","symbolLocation":392,"imageIndex":1},{"imageOffset":13860,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":158},{"imageOffset":343184,"imageIndex":69},{"imageOffset":343184,"imageIndex":69},{"imageOffset":381384,"symbol":"_NSViewHierarchyDidChangeBackingProperties","symbolLocation":244,"imageIndex":159},{"imageOffset":12003112,"symbol":"-[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:]","symbolLocation":192,"imageIndex":159},{"imageOffset":2071916,"symbol":"__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke","symbolLocation":432,"imageIndex":159},{"imageOffset":508016,"symbol":"NSPerformVisuallyAtomicChange","symbolLocation":108,"imageIndex":159},{"imageOffset":2071472,"symbol":"-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]","symbolLocation":96,"imageIndex":159},{"imageOffset":513468,"symbol":"-[NSWindow _setFrameCommon:display:fromServer:]","symbolLocation":2016,"imageIndex":159},{"imageOffset":11973440,"symbol":"-[NSWindow(NSScreenLayout) _setFrame:fromAdjustmentToScreen:anchorIfNeeded:animate:]","symbolLocation":616,"imageIndex":159},{"imageOffset":3237004,"symbol":"-[NSWindow _adjustWindowToScreen]","symbolLocation":1184,"imageIndex":159},{"imageOffset":3366632,"symbol":"-[NSWindow _displayChangedSoAdjustWindows:]","symbolLocation":100,"imageIndex":159},{"imageOffset":15456376,"symbol":"___NSApplicationPerformScreenInvalidationReactions_block_invoke","symbolLocation":84,"imageIndex":159},{"imageOffset":219144,"symbol":"-[NSApplication enumerateWindowsWithOptions:usingBlock:]","symbolLocation":236,"imageIndex":159},{"imageOffset":15454584,"symbol":"___NSApplicationReactToScreenInvalidation_block_invoke","symbolLocation":1012,"imageIndex":159},{"imageOffset":15452600,"symbol":"_NSApplicationReactToScreenInvalidation","symbolLocation":308,"imageIndex":159},{"imageOffset":15453188,"symbol":"-[NSApplication(ScreenHandling) _reactToDisplayChanges:]","symbolLocation":416,"imageIndex":159},{"imageOffset":9873436,"symbol":"_NSCGSDisplayConfigurationUpdateAndInvokeObservers","symbolLocation":436,"imageIndex":159},{"imageOffset":9874688,"symbol":"_NSCGSDisplayConfigurationDidReconfigureNotificationHandler","symbolLocation":316,"imageIndex":159},{"imageOffset":45104,"symbol":"(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)","symbolLocation":920,"imageIndex":160},{"imageOffset":4296092,"symbol":"CGSDatagramReadStream::dispatchMainQueueDatagrams()","symbolLocation":284,"imageIndex":160},{"imageOffset":4295776,"symbol":"invocation function for block in CGSDatagramReadStream::mainQueueWakeup()","symbolLocation":28,"imageIndex":160},{"imageOffset":6956,"symbol":"_dispatch_call_block_and_release","symbolLocation":32,"imageIndex":161},{"imageOffset":112732,"symbol":"_dispatch_client_callout","symbolLocation":16,"imageIndex":161},{"imageOffset":232280,"symbol":"_dispatch_main_queue_drain.cold.5","symbolLocation":812,"imageIndex":161},{"imageOffset":69040,"symbol":"_dispatch_main_queue_drain","symbolLocation":180,"imageIndex":161},{"imageOffset":68844,"symbol":"_dispatch_main_queue_callback_4CF","symbolLocation":44,"imageIndex":161},{"imageOffset":765348,"symbol":"__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__","symbolLocation":16,"imageIndex":162},{"imageOffset":506524,"symbol":"__CFRunLoopRun","symbolLocation":1980,"imageIndex":162},{"imageOffset":502872,"symbol":"CFRunLoopRunSpecific","symbolLocation":572,"imageIndex":162},{"imageOffset":799356,"symbol":"RunCurrentEventLoopInMode","symbolLocation":324,"imageIndex":163},{"imageOffset":812264,"symbol":"ReceiveNextEventCommon","symbolLocation":676,"imageIndex":163},{"imageOffset":2430084,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":76,"imageIndex":163},{"imageOffset":240308,"symbol":"_DPSNextEvent","symbolLocation":684,"imageIndex":159},{"imageOffset":10327472,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":688,"imageIndex":159},{"imageOffset":187492,"symbol":"-[NSApplication run]","symbolLocation":480,"imageIndex":159},{"imageOffset":81772,"imageIndex":69},{"imageOffset":573772,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":540,"imageIndex":45},{"imageOffset":535260,"symbol":"QCoreApplication::exec()","symbolLocation":112,"imageIndex":45},{"imageOffset":2507676,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":48},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":1},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":1},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":1},{"imageOffset":1729512,"symbol":"PyEval_EvalCode","symbolLocation":276,"imageIndex":1},{"imageOffset":1707120,"symbol":"builtin_exec","symbolLocation":428,"imageIndex":1},{"imageOffset":1007044,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":80,"imageIndex":1},{"imageOffset":1788292,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54032,"imageIndex":1},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":1},{"imageOffset":2389028,"symbol":"pymain_run_module","symbolLocation":256,"imageIndex":1},{"imageOffset":2387652,"symbol":"Py_RunMain","symbolLocation":1784,"imageIndex":1},{"imageOffset":2392180,"symbol":"pymain_main","symbolLocation":52,"imageIndex":1},{"imageOffset":2392116,"symbol":"Py_Main","symbolLocation":36,"imageIndex":1},{"imageOffset":15700,"symbol":"main","symbolLocation":128,"imageIndex":0},{"imageOffset":27544,"symbol":"start","symbolLocation":6076,"imageIndex":164}]},{"id":28445733,"name":"ThreadPoolServiceThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553182082368},{"value":4},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":3},{"value":215504279094274},{"value":5878041248},{"value":45315},{"value":1},{"value":1},{"value":369},{"value":6249066496},{"value":0},{"value":5988783528},{"value":5097982432},{"value":0},{"value":6249065808},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5771385272},"cpsr":{"value":2684358656},"fp":{"value":6249065792},"sp":{"value":6249065728},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543247708},"far":{"value":0}},"frames":[{"imageOffset":51548,"symbol":"kevent64","symbolLocation":8,"imageIndex":155},{"imageOffset":66705848,"imageIndex":56},{"imageOffset":66705328,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66384288,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445734,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":275990303473664},{"value":0},{"value":275990303473664},{"value":32},{"value":33000},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":64259},{"value":4267900991},{"value":18446744073709551569},{"value":188},{"value":0},{"value":33000},{"value":32},{"value":275990303473664},{"value":0},{"value":275990303473664},{"value":6257487120},{"value":0},{"value":17179870466},{"value":18446744073709550527},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6257486464},"sp":{"value":6257486384},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66433464,"imageIndex":56},{"imageOffset":66432016,"imageIndex":56},{"imageOffset":66431744,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445735,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":196825466273792},{"value":0},{"value":196825466273792},{"value":32},{"value":33000},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":45827},{"value":3231864996},{"value":18446744073709551569},{"value":96},{"value":0},{"value":33000},{"value":32},{"value":196825466273792},{"value":0},{"value":196825466273792},{"value":6265908496},{"value":0},{"value":17179870466},{"value":18446744073709550527},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6265907840},"sp":{"value":6265907760},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66433464,"imageIndex":56},{"imageOffset":66431884,"imageIndex":56},{"imageOffset":66431792,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445736,"name":"Chrome_IOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553181828480},{"value":3},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":9223372036854775810},{"value":5878041296},{"value":47363},{"value":1},{"value":1},{"value":369},{"value":6274330624},{"value":0},{"value":5988775624},{"value":5098089408},{"value":0},{"value":6274329920},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5771385272},"cpsr":{"value":1610616832},"fp":{"value":6274329904},"sp":{"value":6274329840},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543247708},"far":{"value":0}},"frames":[{"imageOffset":51548,"symbol":"kevent64","symbolLocation":8,"imageIndex":155},{"imageOffset":66705848,"imageIndex":56},{"imageOffset":66705328,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":42148336,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445737,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":211119117434880},{"value":0},{"value":211119117434880},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":49155},{"value":1},{"value":18446744073709551569},{"value":6282752000},{"value":0},{"value":0},{"value":32},{"value":211119117434880},{"value":0},{"value":211119117434880},{"value":6282751056},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6282750400},"sp":{"value":6282750320},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445742,"name":"Chrome_InProcGpuThread","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":258398117429248},{"value":0},{"value":258398117429248},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":60163},{"value":1},{"value":18446744073709551569},{"value":6316437504},{"value":0},{"value":0},{"value":32},{"value":258398117429248},{"value":0},{"value":258398117429248},{"value":6316436560},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6316435904},"sp":{"value":6316435824},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445743,"name":"Chrome_ChildIOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553122471072},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":1},{"value":268280837239810},{"value":5878041392},{"value":52227},{"value":1},{"value":1},{"value":369},{"value":6324858880},{"value":0},{"value":5988795384},{"value":4487130848},{"value":0},{"value":6324858176},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5771385272},"cpsr":{"value":2684358656},"fp":{"value":6324858160},"sp":{"value":6324858096},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543247708},"far":{"value":0}},"frames":[{"imageOffset":51548,"symbol":"kevent64","symbolLocation":8,"imageIndex":155},{"imageOffset":66705848,"imageIndex":56},{"imageOffset":66705328,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":107949588,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445744,"name":"CompositorTileWorker1","threadState":{"x":[{"value":260},{"value":0},{"value":512},{"value":0},{"value":0},{"value":161},{"value":0},{"value":0},{"value":6333279832},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8407179104},{"value":0},{"value":5959658968},{"value":5959659096},{"value":6333280480},{"value":0},{"value":0},{"value":512},{"value":513},{"value":768},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":6333279952},"sp":{"value":6333279808},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}},"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":66586532,"imageIndex":56},{"imageOffset":99447652,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445746,"name":"ThreadPoolSingleThreadSharedForeground0","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":228711303479296},{"value":0},{"value":228711303479296},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":53251},{"value":2261342203},{"value":18446744073709551569},{"value":42},{"value":0},{"value":0},{"value":32},{"value":228711303479296},{"value":0},{"value":228711303479296},{"value":6341700880},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6341700224},"sp":{"value":6341700144},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66432404,"imageIndex":56},{"imageOffset":66432060,"imageIndex":56},{"imageOffset":66431816,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445747,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":235308373245952},{"value":0},{"value":235308373245952},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":54787},{"value":1},{"value":18446744073709551569},{"value":6350123008},{"value":0},{"value":0},{"value":32},{"value":235308373245952},{"value":0},{"value":235308373245952},{"value":6350122064},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6350121408},"sp":{"value":6350121328},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445748,"name":"VizCompositorThread","threadState":{"x":[{"value":268451843},{"value":17179869442},{"value":0},{"value":240805931384832},{"value":0},{"value":240805931384832},{"value":32},{"value":12},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":56067},{"value":1},{"value":18446744073709551569},{"value":6358544384},{"value":0},{"value":12},{"value":32},{"value":240805931384832},{"value":0},{"value":240805931384832},{"value":6358543456},{"value":0},{"value":17179870466},{"value":18446744073709550527},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6358542800},"sp":{"value":6358542720},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":65870544,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445749,"name":"NetworkService","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553166090720},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":9223372036854775807},{"value":1471285139250},{"value":5878041584},{"value":66307},{"value":1},{"value":1},{"value":369},{"value":6370390016},{"value":0},{"value":6009749976},{"value":4504957728},{"value":0},{"value":6370389360},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5771385272},"cpsr":{"value":2684358656},"fp":{"value":6370389344},"sp":{"value":6370389280},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543247708},"far":{"value":0}},"frames":[{"imageOffset":51548,"symbol":"kevent64","symbolLocation":8,"imageIndex":155},{"imageOffset":66705848,"imageIndex":56},{"imageOffset":66705328,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445750,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":371647815090176},{"value":0},{"value":371647815090176},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":86531},{"value":1},{"value":18446744073709551569},{"value":6378811392},{"value":0},{"value":0},{"value":32},{"value":371647815090176},{"value":0},{"value":371647815090176},{"value":6378810448},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6378809792},"sp":{"value":6378809712},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445751,"name":"ThreadPoolSingleThreadForegroundBlocking1","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":369448791834624},{"value":0},{"value":369448791834624},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":86019},{"value":8390210776,"symbolLocation":0,"symbol":"OBJC_CLASS_$_NSAutoreleasePool"},{"value":18446744073709551569},{"value":8407131784},{"value":0},{"value":0},{"value":32},{"value":369448791834624},{"value":0},{"value":369448791834624},{"value":6387232016},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":6387231360},"sp":{"value":6387231280},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66433464,"imageIndex":56},{"imageOffset":66432104,"imageIndex":56},{"imageOffset":66431804,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445778,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":330965884862464},{"value":0},{"value":330965884862464},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":77059},{"value":1},{"value":18446744073709551569},{"value":12991082496},{"value":0},{"value":0},{"value":32},{"value":330965884862464},{"value":0},{"value":330965884862464},{"value":12991081552},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":12991080896},"sp":{"value":12991080816},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445865,"name":"com.apple.NSEventThread","threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":572858442973184},{"value":0},{"value":572858442973184},{"value":2},{"value":4294967295},{"value":0},{"value":17179869184},{"value":0},{"value":2},{"value":0},{"value":0},{"value":133379},{"value":0},{"value":18446744073709551569},{"value":8407180984},{"value":0},{"value":4294967295},{"value":2},{"value":572858442973184},{"value":0},{"value":572858442973184},{"value":13134667912},{"value":8589934592},{"value":21592279046},{"value":18446744073709550527},{"value":4412409862,"symbolLocation":206,"symbol":"strmm_olnucopy_FALKOR"}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":13134667760},"sp":{"value":13134667680},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":511612,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":160,"imageIndex":162},{"imageOffset":505752,"symbol":"__CFRunLoopRun","symbolLocation":1208,"imageIndex":162},{"imageOffset":502872,"symbol":"CFRunLoopRunSpecific","symbolLocation":572,"imageIndex":162},{"imageOffset":1435644,"symbol":"_NSEventThread","symbolLocation":140,"imageIndex":159},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445866,"name":"MemoryInfra","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":595948187156480},{"value":0},{"value":595948187156480},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":138755},{"value":1},{"value":18446744073709551569},{"value":13143142400},{"value":0},{"value":0},{"value":32},{"value":595948187156480},{"value":0},{"value":595948187156480},{"value":13143141456},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":13143140800},"sp":{"value":13143140720},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445867,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":730088605745152},{"value":0},{"value":730088605745152},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":169987},{"value":3441563793},{"value":18446744073709551569},{"value":157},{"value":0},{"value":0},{"value":32},{"value":730088605745152},{"value":0},{"value":730088605745152},{"value":13151563024},{"value":0},{"value":17179869186},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543274912},"cpsr":{"value":4096},"fp":{"value":13151562368},"sp":{"value":13151562288},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543199284},"far":{"value":0}},"frames":[{"imageOffset":3124,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":155},{"imageOffset":78752,"symbol":"mach_msg2_internal","symbolLocation":76,"imageIndex":155},{"imageOffset":38756,"symbol":"mach_msg_overwrite","symbolLocation":484,"imageIndex":155},{"imageOffset":4008,"symbol":"mach_msg","symbolLocation":24,"imageIndex":155},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66432404,"imageIndex":56},{"imageOffset":66431928,"imageIndex":56},{"imageOffset":66431840,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}]},{"id":28445902,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":123544,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":32,"imageIndex":166},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":4},{"value":0},{"value":10496},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13213609640},{"value":0},{"value":1280},{"value":5497558140162},{"value":5497558140162},{"value":1280},{"value":0},{"value":5497558140160},{"value":305},{"value":8407179104},{"value":0},{"value":105553171582976},{"value":105553171583040},{"value":13213610208},{"value":0},{"value":0},{"value":10496},{"value":10496},{"value":12544},{"value":18446744073709551615},{"value":105553446266104}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":13213609760},"sp":{"value":13213609616},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":28445903,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":123544,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":32,"imageIndex":166},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":4},{"value":0},{"value":11008},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13214183080},{"value":0},{"value":1280},{"value":5497558140162},{"value":5497558140162},{"value":1280},{"value":0},{"value":5497558140160},{"value":305},{"value":8407179104},{"value":0},{"value":105553171582976},{"value":105553171583040},{"value":13214183648},{"value":0},{"value":0},{"value":11008},{"value":11008},{"value":13056},{"value":18446744073709551615},{"value":105556532663320}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":13214183200},"sp":{"value":13214183056},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":28445904,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":123544,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":32,"imageIndex":166},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":4},{"value":0},{"value":11264},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13214756520},{"value":0},{"value":1280},{"value":5497558140162},{"value":5497558140162},{"value":1280},{"value":0},{"value":5497558140160},{"value":305},{"value":8407179104},{"value":0},{"value":105553171582976},{"value":105553171583040},{"value":13214757088},{"value":0},{"value":0},{"value":11264},{"value":11264},{"value":13312},{"value":18446744073709551615},{"value":105556667489176}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":13214756640},"sp":{"value":13214756496},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":28445905,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":123544,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":32,"imageIndex":166},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":4},{"value":0},{"value":10240},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13215329960},{"value":0},{"value":1280},{"value":5497558140162},{"value":5497558140162},{"value":1280},{"value":0},{"value":5497558140160},{"value":305},{"value":8407179104},{"value":0},{"value":105553171582976},{"value":105553171583040},{"value":13215330528},{"value":0},{"value":0},{"value":10240},{"value":10240},{"value":12288},{"value":18446744073709551615},{"value":105554117525848}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":13215330080},"sp":{"value":13215329936},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":28445906,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":123544,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":32,"imageIndex":166},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":4},{"value":0},{"value":9984},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13215903400},{"value":0},{"value":1280},{"value":5497558140162},{"value":5497558140162},{"value":1280},{"value":0},{"value":5497558140160},{"value":305},{"value":8407179104},{"value":0},{"value":105553171582976},{"value":105553171583040},{"value":13215903968},{"value":0},{"value":0},{"value":9984},{"value":9984},{"value":12032},{"value":18446744073709551615},{"value":105554318390744}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":13215903520},"sp":{"value":13215903376},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":28445907,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":123544,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":32,"imageIndex":166},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":4},{"value":0},{"value":9472},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13216476840},{"value":0},{"value":1280},{"value":5497558140162},{"value":5497558140162},{"value":1280},{"value":0},{"value":5497558140160},{"value":305},{"value":8407179104},{"value":0},{"value":105553171582976},{"value":105553171583040},{"value":13216477408},{"value":0},{"value":0},{"value":9472},{"value":9472},{"value":11520},{"value":18446744073709551615},{"value":105553244445912}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":13216476960},"sp":{"value":13216476816},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":28445908,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":123544,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":32,"imageIndex":166},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":4},{"value":0},{"value":10752},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13217050280},{"value":0},{"value":1280},{"value":5497558140162},{"value":5497558140162},{"value":1280},{"value":0},{"value":5497558140160},{"value":305},{"value":8407179104},{"value":0},{"value":105553171582976},{"value":105553171583040},{"value":13217050848},{"value":0},{"value":0},{"value":10752},{"value":10752},{"value":12800},{"value":18446744073709551615},{"value":105556667489176}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":13217050400},"sp":{"value":13217050256},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":28445909,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":123544,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":32,"imageIndex":166},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":260},{"value":0},{"value":9728},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13217623720},{"value":0},{"value":1280},{"value":5497558140162},{"value":5497558140162},{"value":1280},{"value":0},{"value":5497558140160},{"value":305},{"value":8407179104},{"value":0},{"value":105553171582976},{"value":105553171583040},{"value":13217624288},{"value":0},{"value":0},{"value":9728},{"value":9728},{"value":11776},{"value":18446744073709551615},{"value":105553244441912}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":13217623840},"sp":{"value":13217623696},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":29137467,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":260},{"value":0},{"value":199680},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12897971912},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8407179104},{"value":0},{"value":4424491024,"symbolLocation":16,"symbol":"thread_status"},{"value":4424491088,"symbolLocation":80,"symbol":"thread_status"},{"value":12897972448},{"value":0},{"value":0},{"value":199680},{"value":199681},{"value":199936},{"value":4424404992,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":12897972032},"sp":{"value":12897971888},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":29137468,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":260},{"value":0},{"value":199680},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12900822728},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8407179104},{"value":0},{"value":4424491152,"symbolLocation":144,"symbol":"thread_status"},{"value":4424491216,"symbolLocation":208,"symbol":"thread_status"},{"value":12900823264},{"value":0},{"value":0},{"value":199680},{"value":199681},{"value":199936},{"value":4424404992,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":12900822848},"sp":{"value":12900822704},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":29137469,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12903067336},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8407179104},{"value":0},{"value":4424491280,"symbolLocation":272,"symbol":"thread_status"},{"value":4424491344,"symbolLocation":336,"symbol":"thread_status"},{"value":12903067872},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4424404992,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":12903067456},"sp":{"value":12903067312},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":29137470,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12906163912},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8407179104},{"value":0},{"value":4424491408,"symbolLocation":400,"symbol":"thread_status"},{"value":4424491472,"symbolLocation":464,"symbol":"thread_status"},{"value":12906164448},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4424404992,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":12906164032},"sp":{"value":12906163888},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":29137471,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12907556552},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8407179104},{"value":0},{"value":4424491536,"symbolLocation":528,"symbol":"thread_status"},{"value":4424491600,"symbolLocation":592,"symbol":"thread_status"},{"value":12907557088},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4424404992,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":12907556672},"sp":{"value":12907556528},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":29137472,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12932411080},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8407179104},{"value":0},{"value":4424491664,"symbolLocation":656,"symbol":"thread_status"},{"value":4424491728,"symbolLocation":720,"symbol":"thread_status"},{"value":12932411616},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4424404992,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":12932411200},"sp":{"value":12932411056},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":29137473,"frames":[{"imageOffset":17356,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":155},{"imageOffset":28896,"symbol":"_pthread_cond_wait","symbolLocation":984,"imageIndex":156},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":27660,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":156},{"imageOffset":7040,"symbol":"thread_start","symbolLocation":8,"imageIndex":156}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12958674632},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8407179104},{"value":0},{"value":4424491792,"symbolLocation":784,"symbol":"thread_status"},{"value":4424491856,"symbolLocation":848,"symbol":"thread_status"},{"value":12958675168},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4424404992,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6543470816},"cpsr":{"value":1610616832},"fp":{"value":12958674752},"sp":{"value":12958674608},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543213516},"far":{"value":0}}},{"id":33161443,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":156}],"threadState":{"x":[{"value":12913504256},{"value":210735},{"value":12912967680},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":12913504256},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543448940},"far":{"value":0}}},{"id":33161968,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":156}],"threadState":{"x":[{"value":13069070336},{"value":209759},{"value":13068533760},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13069070336},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543448940},"far":{"value":0}}},{"id":33162026,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":156}],"threadState":{"x":[{"value":13075247104},{"value":249931},{"value":13074710528},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13075247104},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543448940},"far":{"value":0}}},{"id":33162774,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":156}],"threadState":{"x":[{"value":13070544896},{"value":216927},{"value":13070008320},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13070544896},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543448940},"far":{"value":0}}},{"id":33162775,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":156}],"threadState":{"x":[{"value":13099364352},{"value":184139},{"value":13098827776},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13099364352},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6543448940},"far":{"value":0}}},{"id":33162776,"frames":[{"imageOffset":7020,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":156}],"threadState":{"x":[{"value":13077065728},{"value":0},{"value":13076529152},{"value":0},{"value":278532},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13077065728},"esr":{"value":0,"description":" Address size fault"},"pc":{"value":6543448940},"far":{"value":0}}}],
"usedImages" : [
{
"source" : "P",
"arch" : "arm64",
"base" : 4378181632,
"CFBundleShortVersionString" : "1.8.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "17982d98-65bc-3327-8526-577ec996453c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.8.0.0"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4395728896,
"CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 3948544,
"uuid" : "88bffd37-99d8-36ab-9b95-9f54b30bd667",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.4"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4381507584,
"size" : 49152,
"uuid" : "51d31d0d-1dcc-31ad-b6c1-73d57e544a3a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4381638656,
"size" : 81920,
"uuid" : "3b2e1e73-f5e1-3fa3-80b3-e46009060893",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4380901376,
"size" : 16384,
"uuid" : "39aa96c6-b691-3e20-9540-292b9dd1c861",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4380737536,
"size" : 32768,
"uuid" : "65172ede-2b95-337d-970f-ed6c4a217cb1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4380983296,
"size" : 16384,
"uuid" : "dc7a591b-ef8a-3b77-9396-ecee27303fdb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385554432,
"size" : 196608,
"uuid" : "a4b86716-73ef-3046-b7ee-1d069dfd7cd0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385128448,
"size" : 16384,
"uuid" : "a97f3cfd-a5a7-3ce2-9eb6-5ebc0943bd1d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385210368,
"size" : 16384,
"uuid" : "1eab426b-5d06-3a22-b7b5-6dbc112704d6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4384964608,
"size" : 16384,
"uuid" : "487467f0-5417-397f-8fb9-43ce116abec8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385849344,
"size" : 32768,
"uuid" : "c4b2ad90-cc7d-3780-bee9-9f1dbc2aa560",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385947648,
"size" : 32768,
"uuid" : "167d8231-8346-37b6-9d67-149a1fe3df21",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385046528,
"size" : 16384,
"uuid" : "9e9f3dfb-1383-3420-bfcf-d996842d8e9e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385456128,
"size" : 16384,
"uuid" : "d685528c-5d21-3c1a-b720-81f8ba0b399a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385292288,
"size" : 32768,
"uuid" : "d25f2f2d-a87d-3870-ad6a-3d977d50c9ca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4387274752,
"size" : 16384,
"uuid" : "6fbbcdd9-e49c-3a59-9ff0-32d41317e11c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4389322752,
"size" : 458752,
"uuid" : "3ef7d30f-bd93-3167-a91a-3f0a3f161d1b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4389961728,
"size" : 2670592,
"uuid" : "744b099b-9156-3efd-95ee-949f9bec068e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4403068928,
"size" : 21299200,
"uuid" : "9854a721-2573-3169-81ec-19ea40ce8077",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4436967424,
"size" : 3522560,
"uuid" : "dd0e012a-b6de-31b1-a28e-260c7b51e595",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393287680,
"size" : 311296,
"uuid" : "6d39d54b-d80e-3218-a095-b81ad0b3be90",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4387110912,
"size" : 65536,
"uuid" : "d9875303-8f38-33d9-a0d3-ab0adff3b915",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4388798464,
"size" : 98304,
"uuid" : "ad5b1457-a682-3233-ac84-0f75b349239d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4388569088,
"size" : 16384,
"uuid" : "c1a0a0c0-1986-3338-a63d-eb396e783c91",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4388405248,
"size" : 65536,
"uuid" : "340d4f4e-8cd4-3e24-9215-eb9235031bd3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4388978688,
"size" : 81920,
"uuid" : "6c214dd2-6044-3285-949b-8d8ba72ca17b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4395139072,
"size" : 98304,
"uuid" : "09f94631-f551-3559-ba88-aff49917d8fe",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4388651008,
"size" : 65536,
"uuid" : "7b5335ce-92a1-3ae2-bde0-0e5d5641b2c9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4430036992,
"size" : 622592,
"uuid" : "05ddaab9-9d7f-3317-a3c4-5e9936fe3ceb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4394713088,
"size" : 147456,
"uuid" : "377e255e-f9a4-3173-8265-a899000c5d0f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4395319296,
"size" : 196608,
"uuid" : "8590d52a-d755-3ffd-8f68-f9cb638359fc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4389175296,
"size" : 32768,
"uuid" : "322b4be7-35a8-331a-a549-7a0297d9dd70",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4474257408,
"size" : 1687552,
"uuid" : "59149ee6-b873-3c5d-8fed-d11966210295",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4395597824,
"size" : 32768,
"uuid" : "3206e248-2c9b-345c-98ac-8f9dfc6d639b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4429365248,
"size" : 311296,
"uuid" : "0033ea49-a161-3564-b09e-6a6c3b902698",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4394942464,
"size" : 65536,
"uuid" : "7dab4595-a351-3061-861b-c426baee85b3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4428808192,
"size" : 65536,
"uuid" : "d3035eea-ed0e-398a-afbe-f9a8016701db",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4428513280,
"size" : 81920,
"uuid" : "35fb9307-f991-3159-86db-21f6c67b9198",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4428677120,
"size" : 49152,
"uuid" : "17a4344b-3221-36c4-9019-53cc1223e124",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4432543744,
"size" : 737280,
"uuid" : "49451e8a-e3c8-3429-83d8-249e81e378cd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4429119488,
"size" : 16384,
"uuid" : "5973ec29-8c62-3285-97ee-5797aef28b1c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4429758464,
"size" : 114688,
"uuid" : "229d2556-e1e0-3432-9458-1636804585a5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4428955648,
"size" : 32768,
"uuid" : "0722922a-a378-3dee-b11b-96d1ae381b09",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4478468096,
"size" : 1769472,
"uuid" : "80f789cb-18ee-3995-a59b-03dc33158c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4505731072,
"size" : 4849664,
"uuid" : "113c92ac-6022-34c0-8532-0a96c67af294",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4432166912,
"size" : 81920,
"uuid" : "b6b22843-cb0a-3d00-952e-37e8808d2ee8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 4477026304,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 131072,
"uuid" : "c12848ee-0663-3987-842f-8832599d139f",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61439.120.27"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4743675904,
"size" : 3112960,
"uuid" : "ee8cff87-6a5d-38d1-8403-031c9916b0fb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4750032896,
"size" : 4554752,
"uuid" : "3f78f0e3-d0d9-3375-a27c-2906014b5fe2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4731174912,
"size" : 6537216,
"uuid" : "e1e85506-35dd-32b9-b614-7f3179359271",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4484759552,
"size" : 507904,
"uuid" : "7a365b1d-ddab-3dec-80b0-d21186597d32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4738990080,
"size" : 1572864,
"uuid" : "c8d7e625-2a13-3c34-9dff-b6656a6f86e7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4432363520,
"size" : 65536,
"uuid" : "e159845d-c85f-317e-a1d0-225a578b8d24",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4482236416,
"size" : 98304,
"uuid" : "16db4b50-36fd-3e6b-a27f-a1c2f3f65a0e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4511465472,
"size" : 278528,
"uuid" : "69a381be-74c3-3943-839e-c2710e3b1221",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5704679424,
"size" : 165756928,
"uuid" : "72eb72da-af14-3e6d-a878-889044e69fe6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5014962176,
"size" : 3899392,
"uuid" : "cd78ea4b-fdea-35f8-9425-2acf80e29b96",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5005082624,
"size" : 409600,
"uuid" : "69fc8b0b-b6a0-3e08-8bac-584a6a3a93b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5003804672,
"size" : 540672,
"uuid" : "054ea112-953a-32d0-a58f-bc186ae37747",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4485414912,
"size" : 163840,
"uuid" : "bcc67564-cc1c-3017-b5f1-0b6e1b0e993c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5005705216,
"size" : 3833856,
"uuid" : "432c2bd3-2e4c-3089-b092-df3547feaafd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5013340160,
"size" : 1081344,
"uuid" : "fed592df-e45a-3887-b02f-65e20ff51c4b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5011619840,
"size" : 442368,
"uuid" : "a02974a0-e1a7-316f-8e3b-ae2e03dc4433",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4476829696,
"size" : 81920,
"uuid" : "55f5d063-f2ad-361c-ad8d-afc759bfeec1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5010374656,
"size" : 491520,
"uuid" : "07f8ba95-385f-3636-aaf1-1cee596fe424",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5004541952,
"size" : 163840,
"uuid" : "88b20f5e-7cfd-31bb-ac2c-68580822b362",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4436541440,
"size" : 32768,
"uuid" : "a169d745-309d-33d5-a2e6-e7c4e96708be",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5012226048,
"size" : 229376,
"uuid" : "5b3816f5-31a1-3950-9b9a-77d1f921188c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5020909568,
"size" : 638976,
"uuid" : "68fd5eb3-4cdf-3190-8b80-e5378d6b4c9d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5004967936,
"size" : 49152,
"uuid" : "d02a05cb-6440-3e7e-a02f-931734cab666",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5021810688,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer",
"size" : 425984,
"uuid" : "18efb0a5-0faf-3b56-99ed-a800c68e83f2",
"path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer",
"name" : "AppleMetalOpenGLRenderer",
"CFBundleVersion" : "1"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5916852224,
"CFBundleShortVersionString" : "327.5",
"CFBundleIdentifier" : "com.apple.AGXMetalG13X",
"size" : 6914048,
"uuid" : "a459e0d8-5ddb-360f-817e-bc708b1711b0",
"path" : "\/System\/Library\/Extensions\/AGXMetalG13X.bundle\/Contents\/MacOS\/AGXMetalG13X",
"name" : "AGXMetalG13X",
"CFBundleVersion" : "327.5"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5084086272,
"size" : 147456,
"uuid" : "240cb694-5652-380e-a13f-72e024b43ffc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5895815168,
"size" : 163840,
"uuid" : "78ab6dee-103a-31de-bb4e-ea5e9b694cb0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5022449664,
"size" : 65536,
"uuid" : "ff7c6b72-2303-3d40-a4fa-f3d840425be2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5084348416,
"size" : 49152,
"uuid" : "0895ead1-fff8-3401-9c5c-5c4254ce969b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5022597120,
"size" : 16384,
"uuid" : "157e3710-caca-35b5-9fda-d1c4efc75429",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5096472576,
"size" : 16384,
"uuid" : "b3287e1f-ce2c-3c6f-bc12-deb15c14593c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5915770880,
"size" : 98304,
"uuid" : "5c15959b-b36d-32f8-80b0-b0558dbb9fcc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5096554496,
"size" : 344064,
"uuid" : "edcc52bf-058b-3550-8a40-7e432a5ee6bb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5916000256,
"size" : 16384,
"uuid" : "cd5f3f7c-54a3-322d-a180-6c7b94deed82",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5916082176,
"size" : 16384,
"uuid" : "ecf905dd-b03f-3e39-a475-0f3103f3e6d3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5096308736,
"size" : 32768,
"uuid" : "d197680c-26b9-3292-85bc-f61af0ff34bb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5916327936,
"size" : 16384,
"uuid" : "0d834156-6229-3383-833b-5e4dbda14b77",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5944934400,
"size" : 1114112,
"uuid" : "fd7b00a2-d609-31e8-8ce3-7c101acdcbbe",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5916164096,
"size" : 32768,
"uuid" : "3db66b4e-c7b2-34b6-ae7b-bb92d644ccb7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5916573696,
"size" : 16384,
"uuid" : "5f3c3a7c-ae17-3758-b5c7-5e9a0d0a4a39",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5929844736,
"size" : 180224,
"uuid" : "106fe191-9c12-3ced-bb2f-fa38a412daf1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5942591488,
"size" : 425984,
"uuid" : "de33f8cb-88d5-3371-851a-e5de0f9689c2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5930287104,
"size" : 98304,
"uuid" : "12f930bf-d331-3ae7-88cb-fbf14c2f66f7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5916409856,
"size" : 49152,
"uuid" : "fe5b0329-3d3a-3bfa-a7e9-e6c0e583311e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5946703872,
"size" : 409600,
"uuid" : "358a0dd4-0955-30b7-a45c-561026d32a66",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5930532864,
"size" : 16384,
"uuid" : "89141903-d9ce-369c-b76f-2f794585b0e3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5942280192,
"size" : 147456,
"uuid" : "3a5bf6ce-7cc0-327a-8ff1-52f7adac24a4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5950750720,
"size" : 1114112,
"uuid" : "5200c6a0-ccdb-3607-9947-1defdd6fb647",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5916655616,
"size" : 32768,
"uuid" : "7503f11a-978c-3a80-b5da-ab207a441c5e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5916770304,
"size" : 16384,
"uuid" : "8eb0c267-c007-3e24-9604-1f0a78868795",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5944442880,
"size" : 262144,
"uuid" : "f2c706bd-a2c4-39ce-b4c0-048c01ea0eca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5953110016,
"size" : 376832,
"uuid" : "be0ff669-9570-3fbc-b643-583c25c53bcc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5951946752,
"size" : 688128,
"uuid" : "15feb07e-8bff-3562-a02a-8cf33732e6df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5955076096,
"size" : 524288,
"uuid" : "f077add4-3b80-3e03-9f5d-d46370a8594f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5955715072,
"size" : 606208,
"uuid" : "78bac0b1-a0df-3e6e-b906-cbc961cdb354",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib",
"name" : "libopenjp2.2.5.2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5950455808,
"size" : 114688,
"uuid" : "aa2246c4-3418-31d6-b63c-b12523be454f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib",
"name" : "libz.1.3.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5952765952,
"size" : 163840,
"uuid" : "72b5dc2b-0af5-32a5-8a55-1a0cc0dd14e0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.dylib",
"name" : "libxcb.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5954338816,
"size" : 262144,
"uuid" : "8a87fb4d-f743-3c9e-bee7-721b8d2f34ac",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5930614784,
"size" : 16384,
"uuid" : "55c39336-6291-32f1-a957-7d880570affd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5944836096,
"size" : 16384,
"uuid" : "10cb0192-6e54-3232-ba83-11bac176e9df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5950636032,
"size" : 16384,
"uuid" : "fdd4ed4b-946d-3635-b962-de82abc3462a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5954076672,
"size" : 114688,
"uuid" : "f78c05df-89c8-38d5-90fa-ae102328b198",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5968117760,
"size" : 589824,
"uuid" : "d33db4fb-c546-3a3f-af92-06b3acf9a005",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5953667072,
"size" : 114688,
"uuid" : "7d718d62-a2e1-318a-8f9d-9b2ac2293986",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5954682880,
"size" : 114688,
"uuid" : "5d45ac62-e87c-31ae-9f9a-8bdc101f61d2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5953945600,
"size" : 49152,
"uuid" : "4c5d42bf-4e9d-3c59-bf2e-303deda3aeb2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5958516736,
"size" : 196608,
"uuid" : "c4b0c9bc-a01b-3cf7-b16b-77f9b13b6cd9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5967446016,
"size" : 229376,
"uuid" : "33919aef-b02e-386a-8f81-a661fe002ddc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5954879488,
"size" : 65536,
"uuid" : "d9a192eb-4bf9-362f-99d4-f6bc1e368b01",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5958844416,
"size" : 49152,
"uuid" : "38eab131-624a-32cf-8d4e-374bca53e017",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5967839232,
"size" : 131072,
"uuid" : "3ef700f1-b0ef-333f-8291-6877887bedaa",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5958975488,
"size" : 16384,
"uuid" : "6ea2ba5a-5354-35d2-a092-0249bbb6d929",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5974409216,
"size" : 32768,
"uuid" : "b0eab6c4-6692-3eac-bea4-60c69e87993c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5974523904,
"size" : 147456,
"uuid" : "93458d84-c67a-3585-8201-ff7b58cc50a6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5974294528,
"size" : 32768,
"uuid" : "e00ce596-2864-3abf-bdff-8a38c7f22299",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6021267456,
"size" : 32768,
"uuid" : "dbf1d60b-d923-3193-a32e-96d3a81b9556",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6092718080,
"size" : 442368,
"uuid" : "d64ad34b-954b-3e65-b4b7-cb030bea2c1e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6021365760,
"size" : 32768,
"uuid" : "0552b37d-fa94-3519-9b5c-94cb314a2cd1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6021464064,
"size" : 32768,
"uuid" : "df91425d-7fd1-3fc7-90c3-147cb82c19db",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6388482048,
"size" : 425984,
"uuid" : "faac1c6c-772a-36fc-99b1-1796fe013571",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6388989952,
"size" : 393216,
"uuid" : "d172365c-3e61-356e-841b-8eebabcb45da",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6387253248,
"size" : 32768,
"uuid" : "77608453-0c22-327c-909a-3e61997f035f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6389465088,
"size" : 229376,
"uuid" : "6ae5d9b1-7feb-31a5-b3c1-09bfbb908790",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6387351552,
"size" : 32768,
"uuid" : "2170e2a2-3e24-3e7d-889f-70bfe1445514",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6407569408,
"size" : 8011776,
"uuid" : "2297c440-bc47-3988-b508-c4f43a12de4c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6387449856,
"size" : 32768,
"uuid" : "aaf72e4f-a4b5-3143-abe4-cd0b9c88e736",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6387548160,
"size" : 32768,
"uuid" : "97f0c601-577c-3e3d-9728-1b67a04a846f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6387646464,
"size" : 32768,
"uuid" : "73065b31-2315-3d94-8ece-5a8b66a743b4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6388318208,
"size" : 16384,
"uuid" : "117d4c42-f31b-3051-a57f-edb1c3f20c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13181566976,
"size" : 81920,
"uuid" : "703104dc-b212-3b8d-9c78-4f57b3c9cb18",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13184417792,
"size" : 49152,
"uuid" : "12c53516-421d-3f7a-a81e-95bcfdb8a3ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13251198976,
"size" : 458752,
"uuid" : "6b6db01c-1280-3773-b08f-d693798baba7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13249806336,
"size" : 409600,
"uuid" : "f03f0cb6-82d1-33ee-a10b-cc8d92c14417",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13191069696,
"size" : 81920,
"uuid" : "2f167b0b-b0ab-3b3f-a99e-27fc153b427d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13180960768,
"size" : 16384,
"uuid" : "c802abe8-4352-3827-8717-7d4c0f0892ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13252493312,
"size" : 147456,
"uuid" : "96691a20-aa26-3905-98c4-0939edf5bdd4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12909641728,
"size" : 32768,
"uuid" : "f6112c45-e8b3-3787-a9ab-c7209e77530f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6300057600,
"size" : 753664,
"uuid" : "b6b681ee-3078-3901-a867-0f46c38489a1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6295273472,
"size" : 49152,
"uuid" : "cf3da9e7-3f71-33cf-8133-69a177c7de19",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6295420928,
"size" : 49152,
"uuid" : "bca2dfd9-9c81-3013-a4e9-0505eec8b180",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6293258240,
"size" : 16384,
"uuid" : "370842e5-ccc2-376e-8dec-03f37f99d12d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_sw.cpython-311-darwin.so",
"name" : "_sw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6294470656,
"size" : 16384,
"uuid" : "44f5649d-7eb7-3266-bfeb-a8c867c97d85",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib",
"name" : "libalign_algs.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6294683648,
"size" : 16384,
"uuid" : "c62ad20e-2943-300a-8583-f8d01bcdffc7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/dssp\/_dssp.cpython-311-darwin.so",
"name" : "_dssp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12910313472,
"size" : 32768,
"uuid" : "0b918cd1-028a-3096-be4e-175a2cf8f343",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so",
"name" : "_nw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6303432704,
"size" : 49152,
"uuid" : "cc4a9ffb-4104-3e1b-9c8b-fe1daca40ded",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atom_search\/ast.cpython-311-darwin.so",
"name" : "ast.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6307594240,
"size" : 65536,
"uuid" : "4a455d48-cbb8-33f8-88b3-a251699453d9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/chem_group\/_chem_group.cpython-311-darwin.so",
"name" : "_chem_group.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6293782528,
"size" : 16384,
"uuid" : "c02d0239-f594-35e0-be90-8232dff32cb1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/coulombic\/_esp.cpython-311-darwin.so",
"name" : "_esp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6543196160,
"size" : 243284,
"uuid" : "60485b6f-67e5-38c1-aec9-efd6031ff166",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6543441920,
"size" : 51784,
"uuid" : "647b91fc-96d3-3bbb-af08-970df45257c8",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6541963264,
"size" : 529520,
"uuid" : "f4529d5e-24f3-3bbb-bd3c-984856875fc8",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6543691776,
"size" : 31568,
"uuid" : "519f3220-7499-334a-96d6-ccf3dc28f986",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6610407424,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 21568640,
"uuid" : "5d0da1bd-412c-3ed8-84e9-40ca62fe7b42",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2575.60.5"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6644396032,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 5395200,
"uuid" : "3a386772-a7fe-3359-aac4-1ae9c903cb49",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6541660160,
"size" : 288576,
"uuid" : "8bf83cda-8db1-3d46-94b0-d811bd77e078",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6543921152,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5500928,
"uuid" : "df489a59-b4f6-32b8-9bb4-9b832960aa52",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "3502.1.401"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6739267584,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3174368,
"uuid" : "9286e29f-fcee-31d0-acea-2842ea23bedf",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6539640832,
"size" : 636112,
"uuid" : "9cf0401a-a938-389e-a77d-9e9608076ccf",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6542495744,
"size" : 577528,
"uuid" : "875203a1-087b-33a6-93a5-928bb7e9114c",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 6538805248,
"size" : 5047205888,
"uuid" : "d7397d7f-8df9-3920-81a7-c0a144be9c51"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=30.1G written=499.8M(2%) resident=15.7M(0%) swapped_out=484.1M(2%) unallocated=29.6G(98%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG image 2704K 66 \nColorSync 736K 38 \nCoreAnimation 12.8M 252 \nCoreGraphics 128K 8 \nCoreUI image data 5200K 48 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 29.0G 188 \nMALLOC guard page 288K 18 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 624K 39 \nStack 155.9M 40 \nStack Guard 56.0M 1 \nVM_ALLOCATE 910.3M 1350 \n__AUTH 5521K 697 \n__AUTH_CONST 77.4M 944 \n__CTF 824 1 \n__DATA 34.2M 1090 \n__DATA_CONST 36.9M 1106 \n__DATA_DIRTY 2778K 342 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 646.3M 156 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1121 \n__TEXT (graphics) 432K 5 \n__TPRO_CONST 128K 2 \ndyld private memory 1696K 14 \nmapped file 304.4M 70 \npage table in kernel 15.7M 1 \nshared memory 3168K 25 \n=========== ======= ======= \nTOTAL 32.6G 7641 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "28a1301702f38c27286f1eb97cf349d5fd0f202d",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "63508950b3714d3622fc77f7",
"factorPackIds" : {
"SIRI_MEMORY_SYNC_CONFIG" : "6526e111d0c9ce2f459b54a8"
},
"deploymentId" : 240000015
},
{
"rolloutId" : "64c025b28b7f0e739e4fbe58",
"factorPackIds" : {
"SIRI_UNDERSTANDING_CLASSIC_DEPRECATION" : "657ba0a39ec5da283662e9d2"
},
"deploymentId" : 240000041
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-0332106_cds_0049__caprel_model.cif
Chain information for mgv-genome-0332106_cds_0049__caprel_model.cif #1
---
Chain | Description
A | .
B | .
Color mgv-genome-0332106_cds_0049__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_302458_cds_0055__caprel_model.cif
Chain information for uvig_302458_cds_0055__caprel_model.cif #2
---
Chain | Description
A | .
B | .
Color uvig_302458_cds_0055__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif
Chain information for
imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif
#3
---
Chain | Description
A | .
B | .
Color
imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif
by residue attribute pLDDT_score
> hide #2 models
> hide #1 models
> show #2 models
> show #1 models
> color bychain
> hide #2 models
> hide #1 models
> close #3
> show #1 models
> show #2 models
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/nc_055919.1_cds_0033__caprel_model.cif
Chain information for nc_055919.1_cds_0033__caprel_model.cif #3
---
Chain | Description
A | .
B | .
Color nc_055919.1_cds_0033__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_316842_cds_0025__caprel_model.cif
Chain information for uvig_316842_cds_0025__caprel_model.cif #4
---
Chain | Description
A | .
B | .
Color uvig_316842_cds_0025__caprel_model.cif by residue attribute pLDDT_score
> ui tool show Matchmaker
> matchmaker #2-4 to #1/B pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker mgv-genome-0332106_cds_0049__caprel_model.cif, chain B (#1) with
uvig_302458_cds_0055__caprel_model.cif, chain B (#2), sequence alignment score
= 1928.7
RMSD between 266 pruned atom pairs is 0.646 angstroms; (across all 376 pairs:
7.960)
Matchmaker mgv-genome-0332106_cds_0049__caprel_model.cif, chain B (#1) with
nc_055919.1_cds_0033__caprel_model.cif, chain B (#3), sequence alignment score
= 1938.9
RMSD between 335 pruned atom pairs is 0.637 angstroms; (across all 376 pairs:
1.279)
Matchmaker mgv-genome-0332106_cds_0049__caprel_model.cif, chain B (#1) with
uvig_316842_cds_0025__caprel_model.cif, chain B (#4), sequence alignment score
= 1932.3
RMSD between 348 pruned atom pairs is 0.600 angstroms; (across all 376 pairs:
1.237)
> set bgColor white
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting flat
> view
> select :.A
Expected an objects specifier or a keyword
> select :.A
Expected an objects specifier or a keyword
> select :.A
Expected an objects specifier or a keyword
> select :.A
Expected an objects specifier or a keyword
> hide #1 models
> show #1 models
> select clear
> select :.A
Expected an objects specifier or a keyword
> select A
Expected an objects specifier or a keyword
> select :a
Nothing selected
> select :A
Nothing selected
> select :B
Nothing selected
> color bfactor
14577 atoms, 1818 residues, atom bfactor range 19.5 to 98.7
> color bychain
> coulombic
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for mgv-genome-0332106_cds_0049__caprel_model.cif_A SES
surface #1.1: minimum, -12.76, mean -2.72, maximum 8.31
Coulombic values for mgv-genome-0332106_cds_0049__caprel_model.cif_B SES
surface #1.2: minimum, -13.27, mean 2.66, maximum 19.92
Coulombic values for uvig_302458_cds_0055__caprel_model.cif_A SES surface
#2.1: minimum, -19.21, mean -0.24, maximum 12.50
Coulombic values for uvig_302458_cds_0055__caprel_model.cif_B SES surface
#2.2: minimum, -13.42, mean 2.55, maximum 17.78
Coulombic values for nc_055919.1_cds_0033__caprel_model.cif_A SES surface
#3.1: minimum, -12.67, mean -3.63, maximum 5.09
Coulombic values for nc_055919.1_cds_0033__caprel_model.cif_B SES surface
#3.2: minimum, -13.19, mean 2.73, maximum 18.71
Coulombic values for uvig_316842_cds_0025__caprel_model.cif_A SES surface
#4.1: minimum, -12.58, mean -2.84, maximum 7.14
Coulombic values for uvig_316842_cds_0025__caprel_model.cif_B SES surface
#4.2: minimum, -13.20, mean 2.71, maximum 19.93
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency 80
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B #2/B #3/B #4/B
Alignment identifier is 1
> select #1/B:1 #2/B:1 #3/B:1 #4/B:1
32 atoms, 28 bonds, 4 residues, 4 models selected
> select #1/B:1-234 #2/B:1-234 #3/B:1-234 #4/B:1-234
7596 atoms, 7720 bonds, 936 residues, 4 models selected
. [ID: 1] region 4 chains [1-234] RMSD: 1.511
> color (#!1-4 & sel) purple
> select #1/B:333-376 #2/B:333-376 #3/B:333-376 #4/B:333-376
1396 atoms, 1424 bonds, 176 residues, 4 models selected
> select #1/B:234-376 #2/B:234-376 #3/B:234-376 #4/B:234-376
4556 atoms, 4624 bonds, 572 residues, 4 models selected
. [ID: 1] region 4 chains [234-376] RMSD: 9.397
> color (#!1-4 & sel) dark gray
> select clear
> select #1/B:284-376 #2/B:284-376 #3/B:284-376 #4/B:284-376
2992 atoms, 3048 bonds, 372 residues, 4 models selected
> select #1/B #2/B #3/B #4/B
12116 atoms, 12312 bonds, 1504 residues, 4 models selected
. [ID: 1] region 4 chains [1-376] RMSD: 5.917
> select ~sel
2461 atoms, 2494 bonds, 314 residues, 4 models selected
> color (#!1-4 & sel) orange
> transparency (#!1-4 & sel) 90
> select clear
> ui tool show Contacts
> contacts ignoreHiddenModels true color #ff1c00
195530 contacts
> undo
> redo
> undo
> redo
> transparency 90
> select clear
> ui tool show Contacts
> contacts interModel false intraMol false ignoreHiddenModels true color
> #ff1c00
431 contacts
> contacts interModel false intraMol false ignoreHiddenModels true color
> #ff1c00
431 contacts
> select #1/B
3029 atoms, 3078 bonds, 376 residues, 1 model selected
> select #1/A
734 atoms, 743 bonds, 96 residues, 1 model selected
> color (#!1 & sel) orange
> color (#!1 & sel) yellow
> select #2/A
485 atoms, 492 bonds, 58 residues, 1 model selected
> select #3/A
713 atoms, 725 bonds, 92 residues, 1 model selected
> color (#!3 & sel) #ffb53cff
> color (#!3 & sel) #ffb43dff
> color (#!3 & sel) #ffb33eff
> color (#!3 & sel) #ffb648ff
> color (#!3 & sel) #ffb955ff
> color (#!3 & sel) #ffba5bff
> color (#!3 & sel) #ffbb5fff
> color (#!3 & sel) #ffbb60ff
> color (#!3 & sel) #ffbb5fff
> color (#!3 & sel) #ffbe60ff
> color (#!3 & sel) #ffc461ff
> color (#!3 & sel) #ffcc62ff
> color (#!3 & sel) #ffd363ff
> color (#!3 & sel) #ffd863ff
> color (#!3 & sel) #ffdd64ff
> color (#!3 & sel) #ffe464ff
> color (#!3 & sel) #ffe664ff
> color (#!3 & sel) #ffe965ff
> color (#!3 & sel) #ffeb65ff
> color (#!3 & sel) #ffed65ff
> color (#!3 & sel) #ffee65ff
> color (#!3 & sel) #ffef65ff
> color (#!3 & sel) #ffee65ff
> color (#!3 & sel) #ffed63ff
> color (#!3 & sel) #ffe962ff
> color (#!3 & sel) #ffe661ff
> color (#!3 & sel) #ffe460ff
> color (#!3 & sel) #ffe260ff
> color (#!3 & sel) #ffe160ff
> color (#!3 & sel) #ffe060ff
> color (#!3 & sel) #ffdc61ff
> color (#!3 & sel) #ffd862ff
> color (#!3 & sel) #ffd462ff
> color (#!3 & sel) #ffcc62ff
> color (#!3 & sel) #ffcb63ff
> color (#!3 & sel) #ffc963ff
> color (#!3 & sel) #ffc863ff
> color (#!3 & sel) #ffc763ff
> color (#!3 & sel) #ffc663ff
> color (#!3 & sel) #ffc664ff
> color (#!3 & sel) #ffc565ff
> color (#!3 & sel) #ffc266ff
> color (#!3 & sel) #ffbf67ff
> color (#!3 & sel) #ffbf68ff
> color (#!3 & sel) #ffbd68ff
> color (#!3 & sel) #ffbc69ff
> color (#!3 & sel) #ffbb6aff
> color (#!3 & sel) #ffbb6bff
> color (#!3 & sel) #ffba6cff
> color (#!3 & sel) #ffba6dff
> color (#!3 & sel) #ffbb6dff
> select clear
> transparency 80
> undo
> select #1/B:332-376 #2/B:332-376 #3/B:332-376 #4/B:332-376
1428 atoms, 1456 bonds, 180 residues, 4 models selected
> select #1/B #2/B #3/B #4/B
12116 atoms, 12312 bonds, 1504 residues, 4 models selected
. [ID: 1] region 4 chains [1-376] RMSD: 5.917
> select ~sel
2461 atoms, 2494 bonds, 314 residues, 4 models selected
> color (#!1-4 & sel) orange
> select clear
> transparency 90
> cartoon style xsection rectangle modeHelix default
> undo
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #5 models
> show #5 models
> hide #5 models
> open
> /Users/aegorov/Downloads/fold_funrel_check_x10/fold_funrel_check_x10_model_0.cif
Chain information for fold_funrel_check_x10_model_0.cif #6
---
Chain | Description
A B C D E F G H I J | .
> hide #!1 models
> hide #6 surfaces
> select add #6
34760 atoms, 35330 bonds, 4240 residues, 1 model selected
> hide sel surfaces
> show sel cartoons
> hide sel atoms
> select clear
> color #6 #587f9cff
> ui tool show "Show Sequence Viewer"
> sequence chain #6/A #6/B #6/C #6/D #6/E #6/F #6/G #6/H #6/I #6/J
Alignment identifier is 2
> color #6 #879eaaff
> select #6/A-J:3-7
430 atoms, 430 bonds, 50 residues, 1 model selected
> select #6/A-J:3-126
10380 atoms, 10580 bonds, 1240 residues, 1 model selected
> select #6/A-J:45-46
160 atoms, 150 bonds, 20 residues, 1 model selected
> select #6/A-J:45-215
14080 atoms, 14340 bonds, 1710 residues, 1 model selected
> color sel purple
> select #6/A-J:302-308
600 atoms, 610 bonds, 70 residues, 1 model selected
> select #6/A-J:216-308
7500 atoms, 7590 bonds, 930 residues, 1 model selected
> color sel #aa3172ff
> color sel #aa3374ff
> color sel #aa3474ff
> color sel #aa3473ff
> color sel #aa3572ff
> color sel #aa3472ff
> color sel #aa3271ff
> color sel #aa3170ff
> color sel #aa2e6cff
> color sel #aa2c66ff
> color sel #aa2c64ff
> color sel #aa2b64ff
> color sel #aa2b65ff
> color sel #aa2a66ff
> color sel #aa2a67ff
> color sel #aa2a68ff
> color sel #aa2a69ff
> color sel #aa2b68ff
> color sel #aa2c67ff
> color sel #aa2d67ff
> color sel #aa2e67ff
> color sel #aa3069ff
> color sel #aa3169ff
> color sel #aa316aff
> color sel #aa306bff
> color sel #aa2e6eff
> color sel #aa2c70ff
> color sel #aa2874ff
> color sel #aa2775ff
> color sel #aa2676ff
> color sel #aa2577ff
> color sel #aa2677ff
> color sel #aa2775ff
> color sel #aa2774ff
> color sel #aa2873ff
> color sel #aa2870ff
> color sel #aa286fff
> color sel #aa296fff
> color sel #aa2c72ff
> color sel #aa2e76ff
> color sel #aa2f7bff
> color sel #aa2e80ff
> color sel #aa2d85ff
> color sel #aa2c8aff
> color sel #aa2b8dff
> color sel #aa2b8fff
> color sel #aa2a91ff
> color sel #aa2992ff
> color sel #aa2993ff
> color sel #aa2893ff
> color sel #aa2891ff
> color sel #aa298bff
> color sel #aa2a80ff
> color sel #aa2a7cff
> color sel #aa2a76ff
> color sel #aa2a75ff
> color sel #aa2973ff
> color sel #aa2972ff
> color sel #aa2971ff
> color sel #aa2870ff
> color sel #aa276fff
> color sel #aa276eff
> color sel #aa266eff
> color sel #aa266cff
> color sel #aa276bff
> color sel #aa2b67ff
> color sel #aa2c65ff
> color sel #aa2f63ff
> color sel #aa3064ff
> color sel #aa3265ff
> color sel #aa3365ff
> color sel #aa3466ff
> color sel #aa3566ff
> color sel #aa3565ff
> color sel #aa3461ff
> color sel #aa2f59ff
> color sel #aa2b53ff
> color sel #aa264aff
> color sel #aa2549ff
> color sel #aa2446ff
> color sel #aa213fff
> color sel #aa213bff
> color sel #aa2031ff
> color sel #aa4d22ff
> color sel #aa4926ff
> color sel #aa4627ff
> color sel #aa432aff
> color sel #aa412bff
> color sel #aa3b2fff
> color sel #aa313aff
> color sel #aa3143ff
> color sel #aa304fff
> color sel #aa3051ff
> color sel #aa3054ff
> color sel #aa3055ff
> color sel #aa3159ff
> color sel #aa3059ff
> color sel #aa305aff
> color sel #aa2f5aff
> color sel #aa2f59ff
> color sel #aa2e59ff
> color sel #aa2d59ff
> color sel #aa2c59ff
> color sel #aa2b5aff
> color sel #aa2a5bff
> color sel #aa295bff
> color sel #aa285bff
> color sel #aa275aff
> color sel #aa2759ff
> color sel #aa2659ff
> color sel #aa2759ff
> color sel #aa275aff
> color sel #aa285cff
> color sel #aa295fff
> color sel #aa2a60ff
> color sel #aa2b63ff
> color sel #aa2b64ff
> color sel #aa2c65ff
> color sel #aa2c67ff
> color sel #aa2c68ff
> color sel #aa2c69ff
> color sel #aa2c6aff
> color sel #aa2d6bff
> color sel #aa2d6dff
> color sel #aa2e6eff
> color sel #aa2e6fff
> color sel #aa2f70ff
> color sel #aa2f71ff
> color sel #aa2f72ff
> color sel #aa2f73ff
> color sel #aa3074ff
> color sel #aa3075ff
> color sel #aa3176ff
> color sel #aa3276ff
> color sel #aa3277ff
> color sel #aa2e70ff
> color sel #aa2d6eff
> select clear
> select #6/A-J:39-40
140 atoms, 130 bonds, 20 residues, 1 model selected
> select #6/A-J:39-208
13920 atoms, 14190 bonds, 1700 residues, 1 model selected
> color sel #aa2b35ff
> color sel #aa2c35ff
> color sel #aa3c45ff
> color sel #aa464fff
> color sel #aa5861ff
> color sel #aa646eff
> color sel #aa646fff
> color sel #aa6372ff
> color sel #aa6275ff
> color sel #aa5f7aff
> color sel #aa5f7bff
> color sel #aa5a82ff
> color sel #aa5892ff
> color sel #aa5799ff
> color sel #aa56a0ff
> color sel #aa59a4ff
> color sel #aa5ba6ff
> color sel #aa5da8ff
> color sel #a361aaff
> color sel #9e60aaff
> color sel #9c5faaff
> color sel #925baaff
> color sel #915aaaff
> color sel #8d57aaff
> color sel #8b55aaff
> color sel #8a54aaff
> color sel #8852aaff
> color sel #8853aaff
> color sel #8956aaff
> color sel #8a57aaff
> color sel #8a58aaff
> color sel #8b58aaff
> color sel #8c59aaff
> color sel #8e5aaaff
> color sel #945faaff
> color sel #9660aaff
> color sel #9661aaff
> color sel #9861aaff
> color sel #9761aaff
> color sel #9460aaff
> color sel #935faaff
> color sel #925faaff
> color sel #915eaaff
> color sel #905eaaff
> color sel #905daaff
> color sel #905caaff
> color sel #8f5caaff
> color sel #8f5baaff
> color sel #8f5aaaff
> color sel #8e5aaaff
> color sel #8e59aaff
> color sel #8c57aaff
> color sel #8b57aaff
> color sel #8b56aaff
> select clear
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting flat
> hide #6 models
> show #!1 models
> hide #!1 models
> show #!2 models
> show #!1 models
> show #!3 models
> show #!4 models
> hide #!4 models
> hide #!3 models
> hide #!2 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!1 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> open /Users/aegorov/Downloads/Unknown-12.pdb
Unknown-12.pdb title:
job_A-AF-Q3EBB9-F1-model_v4 [more info...]
Chain information for Unknown-12.pdb
---
Chain | Description
7.1/A | No description available
7.2/A | No description available
> hide #7.1 models
> show #7.1 models
> hide #7.1 models
> hide #!7 models
> hide #!4 models
> show #7.1 models
> color #7.2 #eddb00ff
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/aegorov/Desktop/movie1.mp4
Movie saved to /Users/aegorov/Desktop/movie1.mp4
> hide #!7 models
> hide #7.2 models
> hide #7.1 models
> show #!1 models
> show #5 models
> select #1/B:193 #2/B:193 #3/B:193 #4/B:193
20 atoms, 16 bonds, 4 residues, 4 models selected
> select #1/B:193-242 #2/B:193-242 #3/B:193-242 #4/B:193-242
1604 atoms, 1640 bonds, 200 residues, 4 models selected
. [ID: 1] region 4 chains [193-242] RMSD: 0.804
> select #1/B:158 #2/B:158 #3/B:158 #4/B:158
48 atoms, 48 bonds, 4 residues, 4 models selected
> select #1/B:158 #2/B:158 #3/B:158 #4/B:158
48 atoms, 48 bonds, 4 residues, 4 models selected
. [ID: 1] region 4 chains [158] RMSD: 0.240
> select #1/B:119 #2/B:119 #3/B:119 #4/B:119
44 atoms, 40 bonds, 4 residues, 4 models selected
> select #1/B:119 #2/B:119 #3/B:119 #4/B:119
44 atoms, 40 bonds, 4 residues, 4 models selected
. [ID: 1] region 4 chains [119] RMSD: 0.315
> hide #5 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!1 models
> select #1/B:116-117 #2/B:116-117 #3/B:116-117 #4/B:116-117
32 atoms, 28 bonds, 8 residues, 4 models selected
> select #1/B:116-120 #2/B:116-120 #3/B:116-120 #4/B:116-120
120 atoms, 116 bonds, 20 residues, 4 models selected
. [ID: 1] region 4 chains [116-120] RMSD: 0.320
> hide sel & #!1 surfaces
> undo
> select clear
> hide #!1 surfaces
> select #1/B:122-123 #2/B:122-123 #3/B:122-123 #4/B:122-123
72 atoms, 68 bonds, 8 residues, 4 models selected
> select #1/B:118-123 #2/B:118-123 #3/B:118-123 #4/B:118-123
192 atoms, 188 bonds, 24 residues, 4 models selected
. [ID: 1] region 4 chains [118-123] RMSD: 0.353
> select #1/B:151 #2/B:151 #3/B:151 #4/B:151
32 atoms, 28 bonds, 4 residues, 4 models selected
> select #1/B:144-151 #2/B:144-151 #3/B:144-151 #4/B:144-151
296 atoms, 300 bonds, 32 residues, 4 models selected
. [ID: 1] region 4 chains [144-151] RMSD: 0.297
> select #1/B:298 #2/B:298 #3/B:298 #4/B:298
20 atoms, 16 bonds, 4 residues, 4 models selected
> select #1/B:289-298 #2/B:289-298 #3/B:289-298 #4/B:289-298
336 atoms, 340 bonds, 40 residues, 4 models selected
. [ID: 1] region 4 chains [289-298] RMSD: 11.289
> select #1/B:188-189 #2/B:188-189 #3/B:188-189 #4/B:188-189
64 atoms, 60 bonds, 8 residues, 4 models selected
> select #1/B:181-189 #2/B:181-189 #3/B:181-189 #4/B:181-189
308 atoms, 304 bonds, 36 residues, 4 models selected
. [ID: 1] region 4 chains [181-189] RMSD: 0.271
> select #1/B:122 #2/B:122 #3/B:122 #4/B:122
28 atoms, 24 bonds, 4 residues, 4 models selected
> select #1/B:115-122 #2/B:115-122 #3/B:115-122 #4/B:115-122
212 atoms, 208 bonds, 32 residues, 4 models selected
. [ID: 1] region 4 chains [115-122] RMSD: 0.329
> select #1/B:119 #2/B:119 #3/B:119 #4/B:119
44 atoms, 40 bonds, 4 residues, 4 models selected
> select #1/B:119 #2/B:119 #3/B:119 #4/B:119
44 atoms, 40 bonds, 4 residues, 4 models selected
. [ID: 1] region 4 chains [119] RMSD: 0.315
> select #1/B:158 #2/B:158 #3/B:158 #4/B:158
48 atoms, 48 bonds, 4 residues, 4 models selected
> select #1/B:158 #2/B:158 #3/B:158 #4/B:158
48 atoms, 48 bonds, 4 residues, 4 models selected
. [ID: 1] region 4 chains [158] RMSD: 0.240
> select #1/B:119 #2/B:119 #3/B:119 #4/B:119
44 atoms, 40 bonds, 4 residues, 4 models selected
> select #1/B:119 #2/B:119 #3/B:119 #4/B:119
44 atoms, 40 bonds, 4 residues, 4 models selected
. [ID: 1] region 4 chains [119] RMSD: 0.315
> select #1/B:119,158 #2/B:119,158 #3/B:119,158 #4/B:119,158
92 atoms, 88 bonds, 8 residues, 4 models selected
. [ID: 1] region 4 chains [119] + 1 other block RMSD: 0.280
> select #1/B:82,119,158 #2/B:82,119,158 #3/B:82,119,158 #4/B:82,119,158
136 atoms, 128 bonds, 12 residues, 4 models selected
. [ID: 1] region 4 chains [119] + 2 other blocks RMSD: 0.475
> show sel & #!1 atoms
> color sel & #!1 byhetero
> color (#!1 & sel) red
> label (#!1 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> label height 0.7
> label height 1
> label height 2
> select clear
> hide #!1 models
> show #!2 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!3 models
> show #!2 models
> show #!4 models
> show #5 models
> hide #5 models
> show #5 models
> hide #5 models
> select #1/B:158 #2/B:158 #3/B:158 #4/B:158
48 atoms, 48 bonds, 4 residues, 4 models selected
> select #1/B:158 #2/B:158 #3/B:158 #4/B:158
48 atoms, 48 bonds, 4 residues, 4 models selected
. [ID: 1] region 4 chains [158] RMSD: 0.240
> select #1/B:119,158 #2/B:119,158 #3/B:119,158 #4/B:119,158
92 atoms, 88 bonds, 8 residues, 4 models selected
. [ID: 1] region 4 chains [158] + 1 other block RMSD: 0.280
> select #1/B:82,119,158 #2/B:82,119,158 #3/B:82,119,158 #4/B:82,119,158
136 atoms, 128 bonds, 12 residues, 4 models selected
. [ID: 1] region 4 chains [158] + 2 other blocks RMSD: 0.475
> show sel & #!2-4 atoms
> color (#!2-4 & sel) red
> select clear
> hide #!3 models
> hide #!2 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> show #!2 models
> show #5 models
> close #5-7
> hide #!2 models
> show #!1 models
> show #!4 models
> show #!2 models
> show #!3 models
> close #1-4
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/ivig_1847_cds_0046__caprel_model.cif
Chain information for ivig_1847_cds_0046__caprel_model.cif #1
---
Chain | Description
A | .
B | .
Color ivig_1847_cds_0046__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/imgvr_uvig_2526164726_000001_2526164726_2526185787_81245-120753_cds_0030__caprel_model.cif
Chain information for
imgvr_uvig_2526164726_000001_2526164726_2526185787_81245-120753_cds_0030__caprel_model.cif
#2
---
Chain | Description
A | .
B | .
Color
imgvr_uvig_2526164726_000001_2526164726_2526185787_81245-120753_cds_0030__caprel_model.cif
by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif
Chain information for
imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif
#3
---
Chain | Description
A | .
B | .
Color
imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif
by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/imgvr_uvig_3300008406_000360_3300008406_ga0115224_1000119_28695-83854_cds_0050__caprel_model.cif
Chain information for
imgvr_uvig_3300008406_000360_3300008406_ga0115224_1000119_28695-83854_cds_0050__caprel_model.cif
#4
---
Chain | Description
A | .
B | .
Color
imgvr_uvig_3300008406_000360_3300008406_ga0115224_1000119_28695-83854_cds_0050__caprel_model.cif
by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif
Chain information for
imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif
#5
---
Chain | Description
A | .
B | .
Color
imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif
by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif
Chain information for
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif
#6
---
Chain | Description
A | .
B | .
Color
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif
by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/imgvr_uvig_3300045988_117965_3300045988_ga0495776_154133_cds_0040__caprel_model.cif
Chain information for
imgvr_uvig_3300045988_117965_3300045988_ga0495776_154133_cds_0040__caprel_model.cif
#7
---
Chain | Description
A | .
B | .
Color
imgvr_uvig_3300045988_117965_3300045988_ga0495776_154133_cds_0040__caprel_model.cif
by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-0154653_cds_0001__caprel_model.cif
Chain information for mgv-genome-0154653_cds_0001__caprel_model.cif #8
---
Chain | Description
A | .
B | .
Color mgv-genome-0154653_cds_0001__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-0243292_cds_0030__caprel_model.cif
Chain information for mgv-genome-0243292_cds_0030__caprel_model.cif #9
---
Chain | Description
A | .
B | .
Color mgv-genome-0243292_cds_0030__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-0285849_cds_0029__caprel_model.cif
Chain information for mgv-genome-0285849_cds_0029__caprel_model.cif #10
---
Chain | Description
A | .
B | .
Color mgv-genome-0285849_cds_0029__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-0286105_cds_0054__caprel_model.cif
Chain information for mgv-genome-0286105_cds_0054__caprel_model.cif #11
---
Chain | Description
A | .
B | .
Color mgv-genome-0286105_cds_0054__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-0332106_cds_0049__caprel_model.cif
Chain information for mgv-genome-0332106_cds_0049__caprel_model.cif #12
---
Chain | Description
A | .
B | .
Color mgv-genome-0332106_cds_0049__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-0332881_cds_0021__caprel_model.cif
Chain information for mgv-genome-0332881_cds_0021__caprel_model.cif #13
---
Chain | Description
A | .
B | .
Color mgv-genome-0332881_cds_0021__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-0369858_cds_0010__caprel_model.cif
Chain information for mgv-genome-0369858_cds_0010__caprel_model.cif #14
---
Chain | Description
A | .
B | .
Color mgv-genome-0369858_cds_0010__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/mgv-
> genome-4416137_cds_0026__caprel_model.cif
Chain information for mgv-genome-4416137_cds_0026__caprel_model.cif #15
---
Chain | Description
A | .
B | .
Color mgv-genome-4416137_cds_0026__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/nc_055919.1_cds_0033__caprel_model.cif
Chain information for nc_055919.1_cds_0033__caprel_model.cif #16
---
Chain | Description
A | .
B | .
Color nc_055919.1_cds_0033__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/samea2580206_a1_ct14209_vs1_cds_0032__caprel_model.cif
Chain information for samea2580206_a1_ct14209_vs1_cds_0032__caprel_model.cif
#17
---
Chain | Description
A | .
B | .
Color samea2580206_a1_ct14209_vs1_cds_0032__caprel_model.cif by residue
attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/samn00715152_b1_ct5_vs2_cds_0015__caprel_model.cif
Chain information for samn00715152_b1_ct5_vs2_cds_0015__caprel_model.cif #18
---
Chain | Description
A | .
B | .
Color samn00715152_b1_ct5_vs2_cds_0015__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/srs019073_a1_ct115055_vs1_cds_0041__caprel_model.cif
Chain information for srs019073_a1_ct115055_vs1_cds_0041__caprel_model.cif #19
---
Chain | Description
A | .
B | .
Color srs019073_a1_ct115055_vs1_cds_0041__caprel_model.cif by residue
attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/srs147664_a1_ct51078_vs1_cds_0026__caprel_model.cif
Chain information for srs147664_a1_ct51078_vs1_cds_0026__caprel_model.cif #20
---
Chain | Description
A | .
B | .
Color srs147664_a1_ct51078_vs1_cds_0026__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/station39_mes_combined_final_node_706_length_44789_cov_5.882282_cds_0048__caprel_model.cif
Chain information for
station39_mes_combined_final_node_706_length_44789_cov_5.882282_cds_0048__caprel_model.cif
#21
---
Chain | Description
A | .
B | .
Color
station39_mes_combined_final_node_706_length_44789_cov_5.882282_cds_0048__caprel_model.cif
by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/temphd_cluster_64964_cds_0014__caprel_model.cif
Chain information for temphd_cluster_64964_cds_0014__caprel_model.cif #22
---
Chain | Description
A | .
B | .
Color temphd_cluster_64964_cds_0014__caprel_model.cif by residue attribute
pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_499_cds_0016__caprel_model.cif
Chain information for uvig_499_cds_0016__caprel_model.cif #23
---
Chain | Description
A | .
B | .
Color uvig_499_cds_0016__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_63783_cds_0041__caprel_model.cif
Chain information for uvig_63783_cds_0041__caprel_model.cif #24
---
Chain | Description
A | .
B | .
Color uvig_63783_cds_0041__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_96616_cds_0030__caprel_model.cif
Chain information for uvig_96616_cds_0030__caprel_model.cif #25
---
Chain | Description
A | .
B | .
Color uvig_96616_cds_0030__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_107105_cds_0011__caprel_model.cif
Chain information for uvig_107105_cds_0011__caprel_model.cif #26
---
Chain | Description
A | .
B | .
Color uvig_107105_cds_0011__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_146714_cds_0075__caprel_model.cif
Chain information for uvig_146714_cds_0075__caprel_model.cif #27
---
Chain | Description
A | .
B | .
Color uvig_146714_cds_0075__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_149439_cds_0002__caprel_model.cif
Chain information for uvig_149439_cds_0002__caprel_model.cif #28
---
Chain | Description
A | .
B | .
Color uvig_149439_cds_0002__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_302458_cds_0055__caprel_model.cif
Chain information for uvig_302458_cds_0055__caprel_model.cif #29
---
Chain | Description
A | .
B | .
Color uvig_302458_cds_0055__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_308814_cds_0079__caprel_model.cif
Chain information for uvig_308814_cds_0079__caprel_model.cif #30
---
Chain | Description
A | .
B | .
Color uvig_308814_cds_0079__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_316842_cds_0025__caprel_model.cif
Chain information for uvig_316842_cds_0025__caprel_model.cif #31
---
Chain | Description
A | .
B | .
Color uvig_316842_cds_0025__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_446064_cds_0006__caprel_model.cif
Chain information for uvig_446064_cds_0006__caprel_model.cif #32
---
Chain | Description
A | .
B | .
Color uvig_446064_cds_0006__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_450516_cds_0033__caprel_model.cif
Chain information for uvig_450516_cds_0033__caprel_model.cif #33
---
Chain | Description
A | .
B | .
Color uvig_450516_cds_0033__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_492214__cds_0036__caprel_model.cif
Chain information for uvig_492214__cds_0036__caprel_model.cif #34
---
Chain | Description
A | .
B | .
Color uvig_492214__cds_0036__caprel_model.cif by residue attribute pLDDT_score
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/caprel/filtered_cifs/uvig_499169_cds_0013__caprel_model.cif
Chain information for uvig_499169_cds_0013__caprel_model.cif #35
---
Chain | Description
A | .
B | .
Color uvig_499169_cds_0013__caprel_model.cif by residue attribute pLDDT_score
> select
> #1/A#1/B#2/A#2/B#3/A#3/B#4/A#4/B#5/A#5/B#6/A#6/B#7/A#7/B#8/A#8/B#9/A#9/B#10/A#10/B#11/A#11/B#12/A#12/B#13/A#13/B#14/A#14/B#15/A#15/B#16/A#16/B#17/A#17/B#18/A#18/B#19/A#19/B#20/A#20/B#21/A#21/B#22/A#22/B#23/A#23/B#24/A#24/B#25/A#25/B#26/A#26/B#27/A#27/B#28/A#28/B#29/A#29/B#30/A#30/B#31/A#31/B#32/A#32/B#33/A#33/B#34/A#34/B#35/A#35/B
163749 atoms, 166631 bonds, 20306 residues, 35 models selected
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B #2/B #3/B #4/B #5/B #6/B #7/B #8/B #9/B #10/B #11/B
> #12/B #13/B #14/B #15/B #16/B #17/B #18/B #19/B #20/B #21/B #22/B #23/B
> #24/B #25/B #26/B #27/B #28/B #29/B #30/B #31/B #32/B #33/B #34/B #35/B
Alignment identifier is 1
> select #1/B:332-376 #2/B:332-376 #3/B:332-376 #4/B:332-376 #5/B:332-376
> #6/B:332-376 #7/B:332-376 #8/B:332-376 #9/B:332-376 #10/B:332-376
> #11/B:332-376 #12/B:332-376 #13/B:332-376 #14/B:332-376 #15/B:332-376
> #16/B:332-376 #17/B:332-376 #18/B:332-376 #19/B:332-376 #20/B:332-376
> #21/B:332-376 #22/B:332-376 #23/B:332-376 #24/B:332-376 #25/B:332-376
> #26/B:332-376 #27/B:332-376 #28/B:332-376 #29/B:332-376 #30/B:332-376
> #31/B:332-376 #32/B:332-376 #33/B:332-376 #34/B:332-376 #35/B:332-376
12495 atoms, 12740 bonds, 1575 residues, 35 models selected
> select #1/B #2/B #3/B #4/B #5/B #6/B #7/B #8/B #9/B #10/B #11/B #12/B #13/B
> #14/B #15/B #16/B #17/B #18/B #19/B #20/B #21/B #22/B #23/B #24/B #25/B
> #26/B #27/B #28/B #29/B #30/B #31/B #32/B #33/B #34/B #35/B
106015 atoms, 107730 bonds, 13160 residues, 35 models selected
. [ID: 1] region 35 chains [1-376] RMSD: 38.009
> color sel dark gray
> select #1/B:237 #2/B:237 #3/B:237 #4/B:237 #5/B:237 #6/B:237 #7/B:237
> #8/B:237 #9/B:237 #10/B:237 #11/B:237 #12/B:237 #13/B:237 #14/B:237
> #15/B:237 #16/B:237 #17/B:237 #18/B:237 #19/B:237 #20/B:237 #21/B:237
> #22/B:237 #23/B:237 #24/B:237 #25/B:237 #26/B:237 #27/B:237 #28/B:237
> #29/B:237 #30/B:237 #31/B:237 #32/B:237 #33/B:237 #34/B:237 #35/B:237
210 atoms, 175 bonds, 35 residues, 35 models selected
> select #1/B:1-237 #2/B:1-237 #3/B:1-237 #4/B:1-237 #5/B:1-237 #6/B:1-237
> #7/B:1-237 #8/B:1-237 #9/B:1-237 #10/B:1-237 #11/B:1-237 #12/B:1-237
> #13/B:1-237 #14/B:1-237 #15/B:1-237 #16/B:1-237 #17/B:1-237 #18/B:1-237
> #19/B:1-237 #20/B:1-237 #21/B:1-237 #22/B:1-237 #23/B:1-237 #24/B:1-237
> #25/B:1-237 #26/B:1-237 #27/B:1-237 #28/B:1-237 #29/B:1-237 #30/B:1-237
> #31/B:1-237 #32/B:1-237 #33/B:1-237 #34/B:1-237 #35/B:1-237
66990 atoms, 68075 bonds, 8295 residues, 35 models selected
. [ID: 1] region 35 chains [1-237] RMSD: 39.218
> color sel purple
> color sel #ed849aff
> color sel #ed71b8ff
> color sel #ed32d1ff
> color sel #ed30d0ff
> color sel #ed33e1ff
> color sel #ed31e4ff
> color sel #ed31e5ff
> color sel #cc28edff
> color sel #c624edff
> color sel #c026edff
> color sel #a636edff
> color sel #a436edff
> color sel #a639edff
> color sel #ae43edff
> color sel #b04dedff
> color sel #a556edff
> color sel #a657edff
> select #1/B:331-376 #2/B:331-376 #3/B:331-376 #4/B:331-376 #5/B:331-376
> #6/B:331-376 #7/B:331-376 #8/B:331-376 #9/B:331-376 #10/B:331-376
> #11/B:331-376 #12/B:331-376 #13/B:331-376 #14/B:331-376 #15/B:331-376
> #16/B:331-376 #17/B:331-376 #18/B:331-376 #19/B:331-376 #20/B:331-376
> #21/B:331-376 #22/B:331-376 #23/B:331-376 #24/B:331-376 #25/B:331-376
> #26/B:331-376 #27/B:331-376 #28/B:331-376 #29/B:331-376 #30/B:331-376
> #31/B:331-376 #32/B:331-376 #33/B:331-376 #34/B:331-376 #35/B:331-376
12775 atoms, 13020 bonds, 1610 residues, 35 models selected
> select #1/B #2/B #3/B #4/B #5/B #6/B #7/B #8/B #9/B #10/B #11/B #12/B #13/B
> #14/B #15/B #16/B #17/B #18/B #19/B #20/B #21/B #22/B #23/B #24/B #25/B
> #26/B #27/B #28/B #29/B #30/B #31/B #32/B #33/B #34/B #35/B
106015 atoms, 107730 bonds, 13160 residues, 35 models selected
. [ID: 1] region 35 chains [1-376] RMSD: 38.009
> select ~sel
57734 atoms, 58901 bonds, 7146 residues, 35 models selected
> color sel orange
> select clear
> select #1/B:375-376 #2/B:375-376 #3/B:375-376 #4/B:375-376 #5/B:375-376
> #6/B:375-376 #7/B:375-376 #8/B:375-376 #9/B:375-376 #10/B:375-376
> #11/B:375-376 #12/B:375-376 #13/B:375-376 #14/B:375-376 #15/B:375-376
> #16/B:375-376 #17/B:375-376 #18/B:375-376 #19/B:375-376 #20/B:375-376
> #21/B:375-376 #22/B:375-376 #23/B:375-376 #24/B:375-376 #25/B:375-376
> #26/B:375-376 #27/B:375-376 #28/B:375-376 #29/B:375-376 #30/B:375-376
> #31/B:375-376 #32/B:375-376 #33/B:375-376 #34/B:375-376 #35/B:375-376
525 atoms, 490 bonds, 70 residues, 35 models selected
> select #1/B:375-376 #2/B:375-376 #3/B:375-376 #4/B:375-376 #5/B:375-376
> #6/B:375-376 #7/B:375-376 #8/B:375-376 #9/B:375-376 #10/B:375-376
> #11/B:375-376 #12/B:375-376 #13/B:375-376 #14/B:375-376 #15/B:375-376
> #16/B:375-376 #17/B:375-376 #18/B:375-376 #19/B:375-376 #20/B:375-376
> #21/B:375-376 #22/B:375-376 #23/B:375-376 #24/B:375-376 #25/B:375-376
> #26/B:375-376 #27/B:375-376 #28/B:375-376 #29/B:375-376 #30/B:375-376
> #31/B:375-376 #32/B:375-376 #33/B:375-376 #34/B:375-376 #35/B:375-376
525 atoms, 490 bonds, 70 residues, 35 models selected
. [ID: 1] region 35 chains [375-376] RMSD: 42.014
> select #1/B:82 #2/B:82 #3/B:82 #4/B:82 #5/B:82 #6/B:82 #7/B:82 #8/B:82
> #9/B:82 #10/B:82 #11/B:82 #12/B:82 #13/B:82 #14/B:82 #15/B:82 #16/B:82
> #17/B:82 #18/B:82 #19/B:82 #20/B:82 #21/B:82 #22/B:82 #23/B:82 #24/B:82
> #25/B:82 #26/B:82 #27/B:82 #28/B:82 #29/B:82 #30/B:82 #31/B:82 #32/B:82
> #33/B:82 #34/B:82 #35/B:82
385 atoms, 350 bonds, 35 residues, 35 models selected
> select #1/B:82 #2/B:82 #3/B:82 #4/B:82 #5/B:82 #6/B:82 #7/B:82 #8/B:82
> #9/B:82 #10/B:82 #11/B:82 #12/B:82 #13/B:82 #14/B:82 #15/B:82 #16/B:82
> #17/B:82 #18/B:82 #19/B:82 #20/B:82 #21/B:82 #22/B:82 #23/B:82 #24/B:82
> #25/B:82 #26/B:82 #27/B:82 #28/B:82 #29/B:82 #30/B:82 #31/B:82 #32/B:82
> #33/B:82 #34/B:82 #35/B:82
385 atoms, 350 bonds, 35 residues, 35 models selected
. [ID: 1] region 35 chains [82] RMSD: 26.711
> select #1/B:82,119 #2/B:82,119 #3/B:82,119 #4/B:82,119 #5/B:82,119
> #6/B:82,119 #7/B:82,119 #8/B:82,119 #9/B:82,119 #10/B:82,119 #11/B:82,119
> #12/B:82,119 #13/B:82,119 #14/B:82,119 #15/B:82,119 #16/B:82,119
> #17/B:82,119 #18/B:82,119 #19/B:82,119 #20/B:82,119 #21/B:82,119
> #22/B:82,119 #23/B:82,119 #24/B:82,119 #25/B:82,119 #26/B:82,119
> #27/B:82,119 #28/B:82,119 #29/B:82,119 #30/B:82,119 #31/B:82,119
> #32/B:82,119 #33/B:82,119 #34/B:82,119 #35/B:82,119
770 atoms, 700 bonds, 70 residues, 35 models selected
. [ID: 1] region 35 chains [82] + 1 other block RMSD: 26.520
> select #1/B:82,119,158 #2/B:82,119,158 #3/B:82,119,158 #4/B:82,119,158
> #5/B:82,119,158 #6/B:82,119,158 #7/B:82,119,158 #8/B:82,119,158
> #9/B:82,119,158 #10/B:82,119,158 #11/B:82,119,158 #12/B:82,119,158
> #13/B:82,119,158 #14/B:82,119,158 #15/B:82,119,158 #16/B:82,119,158
> #17/B:82,119,158 #18/B:82,119,158 #19/B:82,119,158 #20/B:82,119,158
> #21/B:82,119,158 #22/B:82,119,158 #23/B:82,119,158 #24/B:82,119,158
> #25/B:82,119,158 #26/B:82,119,158 #27/B:82,119,158 #28/B:82,119,158
> #29/B:82,119,158 #30/B:82,119,158 #31/B:82,119,158 #32/B:82,119,158
> #33/B:82,119,158 #34/B:82,119,158 #35/B:82,119,158
1190 atoms, 1120 bonds, 105 residues, 35 models selected
. [ID: 1] region 35 chains [82] + 2 other blocks RMSD: 26.649
> show sel atoms
> color sel red
> select clear
> ui tool show Matchmaker
> matchmaker #3-35 to #1/B pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif,
chain B (#3), sequence alignment score = 1878
RMSD between 256 pruned atom pairs is 0.671 angstroms; (across all 376 pairs:
16.373)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300008406_000360_3300008406_ga0115224_1000119_28695-83854_cds_0050__caprel_model.cif,
chain B (#4), sequence alignment score = 1850.7
RMSD between 258 pruned atom pairs is 0.760 angstroms; (across all 376 pairs:
12.310)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif,
chain B (#5), sequence alignment score = 1867.5
RMSD between 256 pruned atom pairs is 0.710 angstroms; (across all 376 pairs:
12.086)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif,
chain B (#6), sequence alignment score = 1863.3
RMSD between 238 pruned atom pairs is 0.657 angstroms; (across all 376 pairs:
12.162)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300045988_117965_3300045988_ga0495776_154133_cds_0040__caprel_model.cif,
chain B (#7), sequence alignment score = 1918.2
RMSD between 345 pruned atom pairs is 0.468 angstroms; (across all 376 pairs:
1.547)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0154653_cds_0001__caprel_model.cif, chain B (#8), sequence alignment
score = 1857.3
RMSD between 234 pruned atom pairs is 0.980 angstroms; (across all 376 pairs:
15.394)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0243292_cds_0030__caprel_model.cif, chain B (#9), sequence alignment
score = 1846.5
RMSD between 247 pruned atom pairs is 0.814 angstroms; (across all 376 pairs:
13.019)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0285849_cds_0029__caprel_model.cif, chain B (#10), sequence alignment
score = 1868.1
RMSD between 245 pruned atom pairs is 0.767 angstroms; (across all 376 pairs:
12.218)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0286105_cds_0054__caprel_model.cif, chain B (#11), sequence alignment
score = 1870.5
RMSD between 256 pruned atom pairs is 0.751 angstroms; (across all 376 pairs:
12.124)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0332106_cds_0049__caprel_model.cif, chain B (#12), sequence alignment
score = 1855.5
RMSD between 254 pruned atom pairs is 0.779 angstroms; (across all 376 pairs:
12.277)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0332881_cds_0021__caprel_model.cif, chain B (#13), sequence alignment
score = 1867.5
RMSD between 254 pruned atom pairs is 0.783 angstroms; (across all 376 pairs:
12.331)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0369858_cds_0010__caprel_model.cif, chain B (#14), sequence alignment
score = 1881.9
RMSD between 254 pruned atom pairs is 0.784 angstroms; (across all 376 pairs:
12.346)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-4416137_cds_0026__caprel_model.cif, chain B (#15), sequence alignment
score = 1878.3
RMSD between 242 pruned atom pairs is 0.779 angstroms; (across all 376 pairs:
12.695)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
nc_055919.1_cds_0033__caprel_model.cif, chain B (#16), sequence alignment
score = 1877.7
RMSD between 261 pruned atom pairs is 0.697 angstroms; (across all 376 pairs:
11.635)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
samea2580206_a1_ct14209_vs1_cds_0032__caprel_model.cif, chain B (#17),
sequence alignment score = 1881.3
RMSD between 257 pruned atom pairs is 0.721 angstroms; (across all 376 pairs:
11.819)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
samn00715152_b1_ct5_vs2_cds_0015__caprel_model.cif, chain B (#18), sequence
alignment score = 1867.5
RMSD between 254 pruned atom pairs is 0.739 angstroms; (across all 376 pairs:
11.723)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
srs019073_a1_ct115055_vs1_cds_0041__caprel_model.cif, chain B (#19), sequence
alignment score = 1865.1
RMSD between 245 pruned atom pairs is 0.747 angstroms; (across all 376 pairs:
15.883)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
srs147664_a1_ct51078_vs1_cds_0026__caprel_model.cif, chain B (#20), sequence
alignment score = 1874.7
RMSD between 260 pruned atom pairs is 0.704 angstroms; (across all 376 pairs:
12.206)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
station39_mes_combined_final_node_706_length_44789_cov_5.882282_cds_0048__caprel_model.cif,
chain B (#21), sequence alignment score = 1921.5
RMSD between 365 pruned atom pairs is 0.486 angstroms; (across all 376 pairs:
0.982)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
temphd_cluster_64964_cds_0014__caprel_model.cif, chain B (#22), sequence
alignment score = 1870.5
RMSD between 257 pruned atom pairs is 0.683 angstroms; (across all 376 pairs:
12.097)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_499_cds_0016__caprel_model.cif, chain B (#23), sequence alignment score =
1871.1
RMSD between 257 pruned atom pairs is 0.737 angstroms; (across all 376 pairs:
12.012)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_63783_cds_0041__caprel_model.cif, chain B (#24), sequence alignment score
= 1870.5
RMSD between 258 pruned atom pairs is 0.716 angstroms; (across all 376 pairs:
12.134)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_96616_cds_0030__caprel_model.cif, chain B (#25), sequence alignment score
= 1866.9
RMSD between 246 pruned atom pairs is 0.803 angstroms; (across all 376 pairs:
12.253)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_107105_cds_0011__caprel_model.cif, chain B (#26), sequence alignment
score = 1871.1
RMSD between 259 pruned atom pairs is 0.698 angstroms; (across all 376 pairs:
12.110)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_146714_cds_0075__caprel_model.cif, chain B (#27), sequence alignment
score = 1877.7
RMSD between 262 pruned atom pairs is 0.678 angstroms; (across all 376 pairs:
12.035)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_149439_cds_0002__caprel_model.cif, chain B (#28), sequence alignment
score = 1898.4
RMSD between 344 pruned atom pairs is 0.423 angstroms; (across all 376 pairs:
1.392)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_302458_cds_0055__caprel_model.cif, chain B (#29), sequence alignment
score = 1880.7
RMSD between 243 pruned atom pairs is 0.840 angstroms; (across all 376 pairs:
16.329)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_308814_cds_0079__caprel_model.cif, chain B (#30), sequence alignment
score = 1870.5
RMSD between 250 pruned atom pairs is 0.750 angstroms; (across all 376 pairs:
12.077)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_316842_cds_0025__caprel_model.cif, chain B (#31), sequence alignment
score = 1877.7
RMSD between 255 pruned atom pairs is 0.740 angstroms; (across all 376 pairs:
12.366)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_446064_cds_0006__caprel_model.cif, chain B (#32), sequence alignment
score = 1918.2
RMSD between 334 pruned atom pairs is 0.451 angstroms; (across all 376 pairs:
1.512)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_450516_cds_0033__caprel_model.cif, chain B (#33), sequence alignment
score = 1881.3
RMSD between 263 pruned atom pairs is 0.671 angstroms; (across all 376 pairs:
11.768)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_492214__cds_0036__caprel_model.cif, chain B (#34), sequence alignment
score = 1871.1
RMSD between 262 pruned atom pairs is 0.631 angstroms; (across all 376 pairs:
6.545)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_499169_cds_0013__caprel_model.cif, chain B (#35), sequence alignment
score = 1903.2
RMSD between 352 pruned atom pairs is 0.462 angstroms; (across all 376 pairs:
1.235)
> matchmaker #3-35 to #1/B pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif,
chain B (#3), sequence alignment score = 1878
RMSD between 256 pruned atom pairs is 0.671 angstroms; (across all 376 pairs:
16.373)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300008406_000360_3300008406_ga0115224_1000119_28695-83854_cds_0050__caprel_model.cif,
chain B (#4), sequence alignment score = 1850.7
RMSD between 258 pruned atom pairs is 0.760 angstroms; (across all 376 pairs:
12.310)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif,
chain B (#5), sequence alignment score = 1867.5
RMSD between 256 pruned atom pairs is 0.710 angstroms; (across all 376 pairs:
12.086)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif,
chain B (#6), sequence alignment score = 1863.3
RMSD between 238 pruned atom pairs is 0.657 angstroms; (across all 376 pairs:
12.162)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
imgvr_uvig_3300045988_117965_3300045988_ga0495776_154133_cds_0040__caprel_model.cif,
chain B (#7), sequence alignment score = 1918.2
RMSD between 345 pruned atom pairs is 0.468 angstroms; (across all 376 pairs:
1.547)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0154653_cds_0001__caprel_model.cif, chain B (#8), sequence alignment
score = 1857.3
RMSD between 234 pruned atom pairs is 0.980 angstroms; (across all 376 pairs:
15.394)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0243292_cds_0030__caprel_model.cif, chain B (#9), sequence alignment
score = 1846.5
RMSD between 247 pruned atom pairs is 0.814 angstroms; (across all 376 pairs:
13.019)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0285849_cds_0029__caprel_model.cif, chain B (#10), sequence alignment
score = 1868.1
RMSD between 245 pruned atom pairs is 0.767 angstroms; (across all 376 pairs:
12.218)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0286105_cds_0054__caprel_model.cif, chain B (#11), sequence alignment
score = 1870.5
RMSD between 256 pruned atom pairs is 0.751 angstroms; (across all 376 pairs:
12.124)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0332106_cds_0049__caprel_model.cif, chain B (#12), sequence alignment
score = 1855.5
RMSD between 254 pruned atom pairs is 0.779 angstroms; (across all 376 pairs:
12.277)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0332881_cds_0021__caprel_model.cif, chain B (#13), sequence alignment
score = 1867.5
RMSD between 254 pruned atom pairs is 0.783 angstroms; (across all 376 pairs:
12.331)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-0369858_cds_0010__caprel_model.cif, chain B (#14), sequence alignment
score = 1881.9
RMSD between 254 pruned atom pairs is 0.784 angstroms; (across all 376 pairs:
12.346)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with mgv-
genome-4416137_cds_0026__caprel_model.cif, chain B (#15), sequence alignment
score = 1878.3
RMSD between 242 pruned atom pairs is 0.779 angstroms; (across all 376 pairs:
12.695)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
nc_055919.1_cds_0033__caprel_model.cif, chain B (#16), sequence alignment
score = 1877.7
RMSD between 261 pruned atom pairs is 0.697 angstroms; (across all 376 pairs:
11.635)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
samea2580206_a1_ct14209_vs1_cds_0032__caprel_model.cif, chain B (#17),
sequence alignment score = 1881.3
RMSD between 257 pruned atom pairs is 0.721 angstroms; (across all 376 pairs:
11.819)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
samn00715152_b1_ct5_vs2_cds_0015__caprel_model.cif, chain B (#18), sequence
alignment score = 1867.5
RMSD between 254 pruned atom pairs is 0.739 angstroms; (across all 376 pairs:
11.723)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
srs019073_a1_ct115055_vs1_cds_0041__caprel_model.cif, chain B (#19), sequence
alignment score = 1865.1
RMSD between 245 pruned atom pairs is 0.747 angstroms; (across all 376 pairs:
15.883)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
srs147664_a1_ct51078_vs1_cds_0026__caprel_model.cif, chain B (#20), sequence
alignment score = 1874.7
RMSD between 260 pruned atom pairs is 0.704 angstroms; (across all 376 pairs:
12.206)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
station39_mes_combined_final_node_706_length_44789_cov_5.882282_cds_0048__caprel_model.cif,
chain B (#21), sequence alignment score = 1921.5
RMSD between 365 pruned atom pairs is 0.486 angstroms; (across all 376 pairs:
0.982)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
temphd_cluster_64964_cds_0014__caprel_model.cif, chain B (#22), sequence
alignment score = 1870.5
RMSD between 257 pruned atom pairs is 0.683 angstroms; (across all 376 pairs:
12.097)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_499_cds_0016__caprel_model.cif, chain B (#23), sequence alignment score =
1871.1
RMSD between 257 pruned atom pairs is 0.737 angstroms; (across all 376 pairs:
12.012)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_63783_cds_0041__caprel_model.cif, chain B (#24), sequence alignment score
= 1870.5
RMSD between 258 pruned atom pairs is 0.716 angstroms; (across all 376 pairs:
12.134)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_96616_cds_0030__caprel_model.cif, chain B (#25), sequence alignment score
= 1866.9
RMSD between 246 pruned atom pairs is 0.803 angstroms; (across all 376 pairs:
12.253)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_107105_cds_0011__caprel_model.cif, chain B (#26), sequence alignment
score = 1871.1
RMSD between 259 pruned atom pairs is 0.698 angstroms; (across all 376 pairs:
12.110)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_146714_cds_0075__caprel_model.cif, chain B (#27), sequence alignment
score = 1877.7
RMSD between 262 pruned atom pairs is 0.678 angstroms; (across all 376 pairs:
12.035)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_149439_cds_0002__caprel_model.cif, chain B (#28), sequence alignment
score = 1898.4
RMSD between 344 pruned atom pairs is 0.423 angstroms; (across all 376 pairs:
1.392)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_302458_cds_0055__caprel_model.cif, chain B (#29), sequence alignment
score = 1880.7
RMSD between 243 pruned atom pairs is 0.840 angstroms; (across all 376 pairs:
16.329)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_308814_cds_0079__caprel_model.cif, chain B (#30), sequence alignment
score = 1870.5
RMSD between 250 pruned atom pairs is 0.750 angstroms; (across all 376 pairs:
12.077)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_316842_cds_0025__caprel_model.cif, chain B (#31), sequence alignment
score = 1877.7
RMSD between 255 pruned atom pairs is 0.740 angstroms; (across all 376 pairs:
12.366)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_446064_cds_0006__caprel_model.cif, chain B (#32), sequence alignment
score = 1918.2
RMSD between 334 pruned atom pairs is 0.451 angstroms; (across all 376 pairs:
1.512)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_450516_cds_0033__caprel_model.cif, chain B (#33), sequence alignment
score = 1881.3
RMSD between 263 pruned atom pairs is 0.671 angstroms; (across all 376 pairs:
11.768)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_492214__cds_0036__caprel_model.cif, chain B (#34), sequence alignment
score = 1871.1
RMSD between 262 pruned atom pairs is 0.631 angstroms; (across all 376 pairs:
6.545)
Matchmaker ivig_1847_cds_0046__caprel_model.cif, chain B (#1) with
uvig_499169_cds_0013__caprel_model.cif, chain B (#35), sequence alignment
score = 1903.2
RMSD between 352 pruned atom pairs is 0.462 angstroms; (across all 376 pairs:
1.235)
> hide #1 models
> show #1 models
> hide #34 models
> hide #29 models
> hide #30 models
> hide #26-31 target m
> hide target m
> show #1 target m
> hide #1 models
> show #2 models
> hide #2 models
> show #3 models
> hide #3 models
> show #4 models
> hide #4 models
> show #5 models
> hide #5 models
> show #6 models
> hide #6 models
> show #7 models
> hide #7 models
> show #8 models
> hide #8 models
> show #9 models
> hide #9 models
> show #10 models
> hide #10 models
> show #11 models
> hide #11 models
> show #12 models
> hide #12 models
> show #13 models
> hide #13 models
> show #14 models
> hide #14 models
> show #15 models
> hide #15 models
> show #16 models
> hide #16 models
> show #17 models
> hide #17 models
> show #18 models
> hide #18 models
> show #19 models
> hide #19 models
> show #20 models
> hide #20 models
> show #21 models
> hide #21 models
> show #22 models
> hide #22 models
> show #21 models
> hide #21 models
> show #22 models
> hide #22 models
> show #22 models
> hide #22 models
> show #23 models
> hide #23 models
> show #24 models
> hide #24 models
> show #25 models
> hide #25 models
> show #26 models
> hide #26 models
> show #27 models
> hide #27 models
> show #28 models
> hide #28 models
> show #29 models
> hide #29 models
> show #30 models
> hide #30 models
> show #31 models
> hide #31 models
> show #32 models
> hide #32 models
> show #33 models
> hide #33 models
> show #34 models
> hide #34 models
> show #35 models
> hide #35 models
> show #31 models
> hide #31 models
> show #5 models
> hide #5 models
> show #5 models
> hide #5 models
> show #5 models
> hide #5 models
> show #1 models
> hide #1 models
> show #8 models
> hide #8 models
> show #27 models
> hide #27 models
> show #28 models
> hide #28 models
> show #31 models
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/json_files_homologs_caprel/CCZ70856.1__caprel.json
Failed opening file
/Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/json_files_homologs_caprel/CCZ70856.1__caprel.json:
Opening an AlphaFold PAE file requires specifying the structure to associate.
Did not find an open structure from the same directory. To specify the
structure use menu
Tools / Structure Prediction / AlphaFold Error Plot
or use the open command, for example
open
/Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/json_files_homologs_caprel/CCZ70856.1__caprel.json
format pae structure #1
> hide #31 models
> show #15 models
> hide #15 models
> show #30 models
> hide #30 models
> show #15 models
> log metadata #1
The model has no metadata
> log chains #1
Chain information for ivig_1847_cds_0046__caprel_model.cif #1
---
Chain | Description
A | .
B | .
> log metadata #1
The model has no metadata
> log chains #1
Chain information for ivig_1847_cds_0046__caprel_model.cif #1
---
Chain | Description
A | .
B | .
> log metadata #1
The model has no metadata
> log chains #1
Chain information for ivig_1847_cds_0046__caprel_model.cif #1
---
Chain | Description
A | .
B | .
> log metadata #1
The model has no metadata
> log chains #1
Chain information for ivig_1847_cds_0046__caprel_model.cif #1
---
Chain | Description
A | .
B | .
> view #1 clip false
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> hide #15 models
> log metadata #1
The model has no metadata
> log chains #1
Chain information for ivig_1847_cds_0046__caprel_model.cif #1
---
Chain | Description
A | .
B | .
> show #1 models
> hide #1 models
> show #2 models
> log metadata #2
The model has no metadata
> log chains #2
Chain information for
imgvr_uvig_2526164726_000001_2526164726_2526185787_81245-120753_cds_0030__caprel_model.cif
#2
---
Chain | Description
A | .
B | .
> hide #2 models
> show #3 models
> log metadata #3
The model has no metadata
> log chains #3
Chain information for
imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif
#3
---
Chain | Description
A | .
B | .
> hide #3 models
> show #4 models
> hide #4 models
> show #3 models
> hide #3 models
> show #3 models
> hide #3 models
> show #4 models
> hide #4 models
> show #3 models
> log metadata #3
The model has no metadata
> log chains #3
Chain information for
imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif
#3
---
Chain | Description
A | .
B | .
> hide #3 models
> show #4 models
> hide #4 models
> show #5 models
> log metadata #5
The model has no metadata
> log chains #5
Chain information for
imgvr_uvig_3300025711_000255_3300025711_ga0207696_1000048_102954-133738_cds_0029__caprel_model.cif
#5
---
Chain | Description
A | .
B | .
> hide #5 models
> show #6 models
> log metadata #6
The model has no metadata
> log chains #6
Chain information for
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif
#6
---
Chain | Description
A | .
B | .
> log metadata #6
The model has no metadata
> log chains #6
Chain information for
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif
#6
---
Chain | Description
A | .
B | .
> hide #6 models
> show #7 models
> hide #7 models
> show #6 models
> log metadata #6
The model has no metadata
> log chains #6
Chain information for
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif
#6
---
Chain | Description
A | .
B | .
> hide #6 models
> show #7 models
> hide #7 models
> show #6 models
> hide #6 models
> show #7 models
> hide #7 models
> show #8 models
> hide #8 models
> show #9 models
> log metadata #9
The model has no metadata
> log chains #9
Chain information for mgv-genome-0243292_cds_0030__caprel_model.cif #9
---
Chain | Description
A | .
B | .
> log metadata #9
The model has no metadata
> log chains #9
Chain information for mgv-genome-0243292_cds_0030__caprel_model.cif #9
---
Chain | Description
A | .
B | .
> hide #9 models
> show #10 models
> log metadata #10
The model has no metadata
> log chains #10
Chain information for mgv-genome-0285849_cds_0029__caprel_model.cif #10
---
Chain | Description
A | .
B | .
> hide #10 models
> show #11 models
> log metadata #11
The model has no metadata
> log chains #11
Chain information for mgv-genome-0286105_cds_0054__caprel_model.cif #11
---
Chain | Description
A | .
B | .
> show #12 models
> hide #11 models
> hide #12 models
> show #13 models
> log metadata #13
The model has no metadata
> log chains #13
Chain information for mgv-genome-0332881_cds_0021__caprel_model.cif #13
---
Chain | Description
A | .
B | .
> hide #13 models
> show #14 models
> log metadata #14
The model has no metadata
> log chains #14
Chain information for mgv-genome-0369858_cds_0010__caprel_model.cif #14
---
Chain | Description
A | .
B | .
> hide #14 models
> show #15 models
> log metadata #15
The model has no metadata
> log chains #15
Chain information for mgv-genome-4416137_cds_0026__caprel_model.cif #15
---
Chain | Description
A | .
B | .
> hide #15 models
> show #16 models
> log metadata #16
The model has no metadata
> log chains #16
Chain information for nc_055919.1_cds_0033__caprel_model.cif #16
---
Chain | Description
A | .
B | .
> hide #16 models
> show #17 models
> hide #17 models
> show #18 models
> log metadata #18
The model has no metadata
> log chains #18
Chain information for samn00715152_b1_ct5_vs2_cds_0015__caprel_model.cif #18
---
Chain | Description
A | .
B | .
> hide #18 models
> show #19 models
> log metadata #19
The model has no metadata
> log chains #19
Chain information for srs019073_a1_ct115055_vs1_cds_0041__caprel_model.cif #19
---
Chain | Description
A | .
B | .
> hide #19 models
> show #20 models
> show #20 target m
> hide #20 models
> show #19 models
> hide #19 models
> show #20 models
> hide #20 models
> show #19 models
> hide #19 models
> show #20 models
> hide #20 models
> show #19 models
> hide #19 models
> show #20 models
> hide #20 models
> show #19 models
> hide #19 models
> show #20 models
> log metadata #20
The model has no metadata
> log chains #20
Chain information for srs147664_a1_ct51078_vs1_cds_0026__caprel_model.cif #20
---
Chain | Description
A | .
B | .
> hide #20 models
> show #21 models
> hide #21 models
> show #22 models
> hide #22 models
> show #23 models
> hide #23 models
> show #24 models
> hide #24 models
> show #25 models
> hide #25 models
> show #26 models
> log metadata #26
The model has no metadata
> log chains #26
Chain information for uvig_107105_cds_0011__caprel_model.cif #26
---
Chain | Description
A | .
B | .
> hide #26 models
> show #27 models
> hide #27 models
> show #28 models
> hide #28 models
> show #29 models
> log metadata #29
The model has no metadata
> log chains #29
Chain information for uvig_302458_cds_0055__caprel_model.cif #29
---
Chain | Description
A | .
B | .
> hide #29 models
> show #30 models
> hide #30 models
> show #31 models
> log metadata #31
The model has no metadata
> log chains #31
Chain information for uvig_316842_cds_0025__caprel_model.cif #31
---
Chain | Description
A | .
B | .
> hide #31 models
> show #32 models
> hide #32 models
> show #33 models
> hide #33 models
> show #34 models
> log metadata #34
The model has no metadata
> log chains #34
Chain information for uvig_492214__cds_0036__caprel_model.cif #34
---
Chain | Description
A | .
B | .
> hide #34 models
> show #35 models
> hide #35 models
> show #15 models
> hide #15 models
> show #26 models
> hide #26 models
> show #26 models
> hide #26 models
> show #30 models
> hide #30 models
> show #31 models
> hide #31 models
> show #35 models
> hide #35 models
> show #31 models
> hide #31 models
> show #1 models
> show #1 target m
> log metadata #1
The model has no metadata
> log chains #1
Chain information for ivig_1847_cds_0046__caprel_model.cif #1
---
Chain | Description
A | .
B | .
> hide #1 models
> show #1 models
> hide #1 models
> show #28 models
> hide #28 models
> show #11 models
> hide #11 models
> show #35 models
> log metadata #35
The model has no metadata
> log chains #35
Chain information for uvig_499169_cds_0013__caprel_model.cif #35
---
Chain | Description
A | .
B | .
> hide #35 models
> show #30 models
> hide #30 models
> show #22 models
> hide #22 models
> show #30 models
> hide #30 models
> show #33 models
> hide #33 models
> show #30 models
> hide #30 models
> show #34 models
> hide #34 models
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/cifs_of_homologs/hml48345.1__prel_model.cif
Chain information for hml48345.1__prel_model.cif #36
---
Chain | Description
A | .
B | .
Color hml48345.1__prel_model.cif by residue attribute pLDDT_score
> select add #36
2591 atoms, 2645 bonds, 315 residues, 1 model selected
> color sel bychain
> hide #36 models
> show #36 models
> select subtract #36
Nothing selected
> hide #36 models
> show #35 models
> hide #35 models
> show #34 models
> hide #34 models
> show #34 models
> hide #34 models
> show #35 models
> hide #35 models
> show #26 models
> hide #26 models
> open
> /Users/aegorov/Desktop/LU_Lab_Projects/anti_defences/cifs_of_homologs/wp_238702502.1__prel_model.cif
Chain information for wp_238702502.1__prel_model.cif #37
---
Chain | Description
A | .
B | .
Color wp_238702502.1__prel_model.cif by residue attribute pLDDT_score
> select add #37
3314 atoms, 3376 bonds, 403 residues, 1 model selected
> color sel bychain
> select subtract #37
Nothing selected
> hide #37 models
> show #30 models
> hide #30 models
> show #29 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> close #36-37
> hide #29 models
> show #29 models
> coulombic #29
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for uvig_302458_cds_0055__caprel_model.cif_A SES surface
#29.1: minimum, -19.21, mean -0.24, maximum 12.50
Coulombic values for uvig_302458_cds_0055__caprel_model.cif_B SES surface
#29.2: minimum, -13.42, mean 2.55, maximum 17.78
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #29 80
> transparency #29 20
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> transparency #29 90
> lighting flat
> transparency #29 100
> hide #!29 models
> show #!29 models
> hide #!29 models
> show #1 models
> coulombic #1
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for ivig_1847_cds_0046__caprel_model.cif_A SES surface #1.1:
minimum, -16.61, mean -1.28, maximum 8.11
Coulombic values for ivig_1847_cds_0046__caprel_model.cif_B SES surface #1.2:
minimum, -13.25, mean 2.89, maximum 18.62
To also show corresponding color key, enter the above coulombic command and
add key true
> lighting flat
> transparency #1 100
> transparency #1 10
> hide #!1 models
> show #23 models
> hide #23 models
> show #35 models
> ui tool show "Side View"
> coulombic #35
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for uvig_499169_cds_0013__caprel_model.cif_A SES surface
#35.1: minimum, -10.46, mean 0.13, maximum 9.87
Coulombic values for uvig_499169_cds_0013__caprel_model.cif_B SES surface
#35.2: minimum, -13.88, mean 2.96, maximum 21.57
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #35 100
> transparency #35 10
> hide #!35 models
> show #34 models
> coulombic #34
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for uvig_492214__cds_0036__caprel_model.cif_A SES surface
#34.1: minimum, -12.43, mean -1.81, maximum 8.22
Coulombic values for uvig_492214__cds_0036__caprel_model.cif_B SES surface
#34.2: minimum, -13.19, mean 2.49, maximum 17.21
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #34 100
> transparency #34 90
> transparency #34 10
> transparency #34 20
> hide #!34 models
> show #19 models
> coulombic #19
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for srs019073_a1_ct115055_vs1_cds_0041__caprel_model.cif_A
SES surface #19.1: minimum, -19.14, mean -2.87, maximum 8.52
Coulombic values for srs019073_a1_ct115055_vs1_cds_0041__caprel_model.cif_B
SES surface #19.2: minimum, -13.01, mean 2.48, maximum 18.26
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #19 100
> transparency #19 10
> hide #!19 models
> show #31 models
> coulombic #31
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for uvig_316842_cds_0025__caprel_model.cif_A SES surface
#31.1: minimum, -12.58, mean -2.84, maximum 7.14
Coulombic values for uvig_316842_cds_0025__caprel_model.cif_B SES surface
#31.2: minimum, -13.20, mean 2.71, maximum 19.93
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #31 100
> transparency #31 10
> hide #!31 models
> show #15 models
> coulombic #15
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for mgv-genome-4416137_cds_0026__caprel_model.cif_A SES
surface #15.1: minimum, -19.01, mean -4.14, maximum 9.02
Coulombic values for mgv-genome-4416137_cds_0026__caprel_model.cif_B SES
surface #15.2: minimum, -13.71, mean 2.79, maximum 20.60
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #15 100
> transparency #15 10
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #16 models
> coulombic #16
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for nc_055919.1_cds_0033__caprel_model.cif_A SES surface
#16.1: minimum, -12.67, mean -3.63, maximum 5.09
Coulombic values for nc_055919.1_cds_0033__caprel_model.cif_B SES surface
#16.2: minimum, -13.19, mean 2.73, maximum 18.71
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #16 100
> transparency #16 10
> hide #!16 models
> show #3 models
> hide #3 models
> show #3 models
> color #3 bychain
> undo
> coulombic #3
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for
imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif_A
SES surface #3.1: minimum, -10.77, mean -0.37, maximum 9.46
Coulombic values for
imgvr_uvig_3300008005_000900_3300008005_ga0100385_1000007_127851-178635_cds_0030__caprel_model.cif_B
SES surface #3.2: minimum, -13.30, mean 2.46, maximum 15.78
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #3 100
> transparency #3 10
> hide #!3 models
> show #9 models
> coulombic #9
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for mgv-genome-0243292_cds_0030__caprel_model.cif_A SES
surface #9.1: minimum, -16.17, mean -3.80, maximum 10.94
Coulombic values for mgv-genome-0243292_cds_0030__caprel_model.cif_B SES
surface #9.2: minimum, -13.38, mean 2.61, maximum 21.63
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #9 100
> transparency #9 10
> hide #!9 models
> show #11 models
> coulombic #11
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for mgv-genome-0286105_cds_0054__caprel_model.cif_A SES
surface #11.1: minimum, -8.37, mean 1.07, maximum 9.36
Coulombic values for mgv-genome-0286105_cds_0054__caprel_model.cif_B SES
surface #11.2: minimum, -20.76, mean 2.68, maximum 19.91
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #11 100
> transparency #11 10
> transparency #11 100
> show #10 models
> hide #!11 models
> hide #10 models
> show #7 models
> hide #7 models
> show #6 models
> coulombic #6
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif_A
SES surface #6.1: minimum, -30.74, mean -0.42, maximum 14.74
Coulombic values for
imgvr_uvig_3300045988_012104_3300045988_ga0495776_015938_cds_0072__caprel_model.cif_B
SES surface #6.2: minimum, -18.41, mean 2.68, maximum 20.17
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency #6 70
> transparency #6 100
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/aegorov/Downloads/fold_huge_pin_ecoli/fold_huge_pin_ecoli_model_0.cif
> format mmcif
Chain information for fold_huge_pin_ecoli_model_0.cif #1
---
Chain | Description
A | .
> close
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Model Number: Z15J003AGRU/A
Chip: Apple M1 Pro
Total Number of Cores: 8 (6 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 11881.121.1
OS Loader Version: 11881.121.1
Software:
System Software Overview:
System Version: macOS 15.5 (24F74)
Kernel Version: Darwin 24.5.0
Time since boot: 35 days, 6 hours, 19 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
LG UltraFine:
Resolution: 4096 x 2304
UI Looks like: 2048 x 1152 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 3 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 3 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
