AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' object has no attribute 'Ok'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-14.3.1-arm64-arm-64bit
ChimeraX Version: 1.11.dev202508010600 (2025-08-01 06:00:49 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.11.dev202508010600 (2025-08-01)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open /Users/zhangziyin/Desktop/PDB61rm.cxs format session

Log from Fri Aug 15 14:57:58 2025UCSF ChimeraX version: 1.11.dev202508010600
(2025-08-01)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/zhangziyin/Downloads/pdb6r1m.ent

pdb6r1m.ent title:  
Crystal structure of E. Coli seryl-TRNA synthetase complexed to seryl
sulfamoyl adenosine [more info...]  
  
Chain information for pdb6r1m.ent #1  
---  
Chain | Description  
A B | serine--TRNA ligase  
  
Non-standard residues in pdb6r1m.ent #1  
---  
EDO — 1,2-ethanediol (ethylene glycol)  
PO4 — phosphate ion  
SSA — 5'-O-(N-(L-seryl)-sulfamoyl)adenosine  
  
200 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
6649 atoms have anisotropic B-factors. Depict anisotropic information with
Thermal Ellipsoids [start tool...] or the aniso command.  

> set bgColor white

> select /A

3815 atoms, 3430 bonds, 1 pseudobond, 872 residues, 2 models selected  

> hide sel cartoons

> hide sel atoms

[Repeated 1 time(s)]

> hide #!1 models

> show #!1 models

> hide sel atoms

> select /A

3815 atoms, 3430 bonds, 1 pseudobond, 872 residues, 2 models selected  

> hide sel atoms

> select add #1

7689 atoms, 6891 bonds, 1 pseudobond, 1775 residues, 3 models selected  

> hide sel atoms

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> show sel atoms

> select add #1

7689 atoms, 6891 bonds, 1 pseudobond, 1775 residues, 3 models selected  

> select subtract #1

Nothing selected  

> select /B

3874 atoms, 3461 bonds, 903 residues, 1 model selected  

> hide sel atoms

> select /A

3815 atoms, 3430 bonds, 1 pseudobond, 872 residues, 2 models selected  

> hide sel atoms

> select /B

3874 atoms, 3461 bonds, 903 residues, 1 model selected  

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> show sel atoms

> select /A

3815 atoms, 3430 bonds, 1 pseudobond, 872 residues, 2 models selected  

> hide sel atoms

> select /A:208/b:208

8 atoms, 6 bonds, 2 residues, 1 model selected  

> show sel atoms

> hide sel atoms

> color sel red

> color #1 #7a81ffff

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> color #1 #ff2600ff

> undo

> color sel red

> select clear

> select /A:208/b:208

8 atoms, 6 bonds, 2 residues, 1 model selected  

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> color sel medium blue

> ui tool show "Color Actions"

> color sel green

> color sel olive

> color sel hot pink

> color sel deep pink

> color sel medium blue

> color sel olive drab

> color sel green yellow

> color sel gold

> color sel yellow

> color sel dark orange

> color sel green yellow

> color sel yellow

> color sel cyan

> color sel forest green

> color sel lime

> color sel cornflower blue

> color sel blue

> color sel magenta

> color sel red

> color sel orange red

> color sel crimson

> color sel yellow

> select clear

> undo

> color sel orange red

> select clear

> select /A:208/b:208

8 atoms, 6 bonds, 2 residues, 1 model selected  

> color sel red

> select clear

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1662, in color_by_editor  
cd.setOption(cd.NoButtons, True)  
^^^^^^^^^^^^  
AttributeError: 'PySide6.QtWidgets.QColorDialog' object has no attribute
'NoButtons'  
  
AttributeError: 'PySide6.QtWidgets.QColorDialog' object has no attribute
'NoButtons'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1662, in color_by_editor  
cd.setOption(cd.NoButtons, True)  
^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> ui tool show "Color Actions"

> color sel cadet blue

> color sel dark goldenrod

> color sel yellow green

> color sel chartreuse

> color sel lawn green

> color sel spring green

> color sel coral

> color sel tomato

> color sel yellow

> color sel dark orange

> color sel green yellow

> color sel olive drab

> color sel medium sea green

> color sel lime green

> color sel green

> color sel forest green

> color sel spring green

> color sel lawn green

> color sel chartreuse

> color sel lime green

> color sel spring green

> color sel cyan

> select clear

> undo

> color sel lime

> color sel light sea green

> color sel hot pink

> color sel magenta

> ui tool show "Color Actions"

> color sel yellow green

> select clear

> select /A:237/a:238/a:239/a:391

27 atoms, 25 bonds, 4 residues, 1 model selected  

> select /b:237/b:238/b:239/b:391

27 atoms, 25 bonds, 4 residues, 1 model selected  

> select /b:237/b:238/b:239/b:391/b:291

36 atoms, 33 bonds, 5 residues, 1 model selected  

> select
> /b:237/b:238/b:239/b:391/b:291/b:268/b:269/b:270/b:355/b:356/b:357/b:358

91 atoms, 86 bonds, 12 residues, 1 model selected  

> color sel light sea green

> select ::name="HOH"

894 atoms, 894 residues, 1 model selected  

> show sel atoms

> hide sel atoms

> select ::name="EDO"

68 atoms, 51 bonds, 17 residues, 1 model selected  

> show sel atoms

> hide sel atoms

> select ::name="PO4"

20 atoms, 16 bonds, 4 residues, 1 model selected  

> show sel atoms

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> select ::name="PO4"

20 atoms, 16 bonds, 4 residues, 1 model selected  

> hide sel atoms

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> select
> /b:237/b:238/b:239/b:391/b:291/b:268/b:269/b:270/b:355/b:356/b:357/b:358

91 atoms, 86 bonds, 12 residues, 1 model selected  

> hbonds sel reveal true

The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: /A ARG 51 NE; /A LYS 377 N; /B ARG 20 NE; /B SER 378 N  

65 hydrogen bonds found  

> ~hbonds

> select
> /b:237/b:238/b:239/b:391/b:291/b:268/b:269/b:270/b:355/b:356/b:357/b:358

91 atoms, 86 bonds, 12 residues, 1 model selected  

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> hbonds sel reveal true

The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: /A ARG 51 NE; /A LYS 377 N; /B ARG 20 NE; /B SER 378 N  

44 hydrogen bonds found  

> select /A

3815 atoms, 3430 bonds, 22 pseudobonds, 872 residues, 3 models selected  

> hide sel atoms

> select ::name="HOH"

894 atoms, 894 residues, 1 model selected  

> hide sel atoms

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> color sel orange red

> ui tool show "Color Actions"

> color sel crimson

> color sel orange red

> color sel brown

> color sel olive

> color sel sienna

> color sel gold

> color sel green yellow

> color sel purple

> color sel medium orchid

> color sel dark violet

> color sel deep pink

> color sel magenta

> color sel light coral

> color sel light goldenrod yellow

> color sel orange

> color sel tomato

> color sel indian red

> color sel dark orange

> color sel goldenrod

> color sel cyan

> color sel indigo

> color sel navy

> color sel blue

> color sel teal

> color sel dark cyan

> color sel medium aquamarine

> color sel lime

> color sel spring green

> color sel lime green

> color sel yellow green

> select clear

> undo

> color sel orange

> select clear

> ui mousemode right clip

> lighting full

> lighting soft

> lighting simple

> lighting soft

> lighting full

> lighting simple

> select /B

3874 atoms, 3461 bonds, 23 pseudobonds, 903 residues, 2 models selected  

> hide sel atoms

> undo

> select add #1

7689 atoms, 6891 bonds, 45 pseudobonds, 1775 residues, 4 models selected  

> hide sel atoms

[Repeated 1 time(s)]

> select subtract #1

Nothing selected  

> select add #1

7689 atoms, 6891 bonds, 45 pseudobonds, 1775 residues, 4 models selected  

> hide sel atoms

[Repeated 1 time(s)]

> select /B

3874 atoms, 3461 bonds, 23 pseudobonds, 903 residues, 2 models selected  

> hide sel atoms

[Repeated 1 time(s)]

> hide sel cartoons

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> show sel atoms

> select
> /b:237/b:238/b:239/b:391/b:291/b:268/b:269/b:270/b:355/b:356/b:357/b:358

91 atoms, 86 bonds, 12 residues, 1 model selected  

> show sel atoms

> hide sel cartoons

> show sel cartoons

> select
> /b:237/b:238/b:239/b:391/b:291/b:268/b:269/b:270/b:355/b:356/b:357/b:358/b:208

95 atoms, 89 bonds, 13 residues, 1 model selected  

> select
> /b:237/b:238/b:239/b:391/b:291/b:268/b:269/b:270/b:355/b:356/b:357/b:358/b:208

95 atoms, 89 bonds, 13 residues, 1 model selected  

> select /b:208

4 atoms, 3 bonds, 1 residue, 1 model selected  

> show sel atoms

> show sel cartoons

> select /A

3815 atoms, 3430 bonds, 22 pseudobonds, 872 residues, 3 models selected  

> hide sel atoms

> select /B

3874 atoms, 3461 bonds, 23 pseudobonds, 903 residues, 2 models selected  

> show sel cartoons

> select /B

3874 atoms, 3461 bonds, 23 pseudobonds, 903 residues, 2 models selected  

> style sel sphere

Changed 3874 atom styles  

> undo

> select clear

> select /B

3874 atoms, 3461 bonds, 23 pseudobonds, 903 residues, 2 models selected  

> style sel sphere

Changed 3874 atom styles  

> undo

> select add #1

7689 atoms, 6891 bonds, 45 pseudobonds, 1775 residues, 4 models selected  

> style sel sphere

Changed 7689 atom styles  

> select subtract #1

Nothing selected  

> select add #1

7689 atoms, 6891 bonds, 45 pseudobonds, 1775 residues, 4 models selected  

> hide #!1 models

> show #!1 models

> select subtract #1

Nothing selected  

> select add #1

7689 atoms, 6891 bonds, 45 pseudobonds, 1775 residues, 4 models selected  

> style sel ball

Changed 7689 atom styles  

> style sel ball

Changed 7689 atom styles  

> style sel stick

Changed 7689 atom styles  

> select /B

3874 atoms, 3461 bonds, 23 pseudobonds, 903 residues, 2 models selected  

> style sel sphere

Changed 3874 atom styles  

> show sel surfaces

> undo

[Repeated 1 time(s)]

> color #1 #7a81ff36

> color #1 #7a81ff11

> color #1 #7a81ff57

> color #1 #7a81ff36

> color #1 #7a81ffff

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> preset "molecular surfaces" "atomic coloring (transparent)"

Using preset: Molecular Surfaces / Atomic Coloring (Transparent)  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color fromatoms targ s trans 70

  

> select add #1

7689 atoms, 6891 bonds, 45 pseudobonds, 1775 residues, 5 models selected  

> select subtract #1

2 models selected  

> preset "molecular surfaces" "chain id coloring (opaque)"

Using preset: Molecular Surfaces / Chain ID Coloring (Opaque)  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color bychain targ s trans 0

  

> preset "molecular surfaces" "ghostly white"

Using preset: Molecular Surfaces / Ghostly White  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color white targ s trans 80

  

> preset "molecular surfaces" "atomic coloring (transparent)"

Using preset: Molecular Surfaces / Atomic Coloring (Transparent)  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color fromatoms targ s trans 70

  

> select /B

3874 atoms, 3461 bonds, 23 pseudobonds, 903 residues, 2 models selected  

> hide sel surfaces

> undo

> show sel surfaces

> select /A

3815 atoms, 3430 bonds, 22 pseudobonds, 872 residues, 3 models selected  

> hide sel surfaces

> select /b:208

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> color sel red

> hide sel surfaces

[Repeated 1 time(s)]

> select /B

3874 atoms, 3461 bonds, 23 pseudobonds, 903 residues, 2 models selected  

> hide sel surfaces

> select add #1

7689 atoms, 6891 bonds, 45 pseudobonds, 1775 residues, 5 models selected  

> select subtract #1

2 models selected  

> select
> /b:237/b:238/b:239/b:391/b:291/b:268/b:269/b:270/b:355/b:356/b:357/b:358/

Expected an objects specifier or a keyword  

> select
> /b:237/b:238/b:239/b:391/b:291/b:268/b:269/b:270/b:355/b:356/b:357/b:358

91 atoms, 86 bonds, 12 residues, 1 model selected  

> color (#!1 & sel) lime

> color (#!1 & sel) forest green

> color (#!1 & sel) light sea green

> select /b:208

4 atoms, 3 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) orange

> color (#!1 & sel) cyan

> color (#!1 & sel) hot pink

> color (#!1 & sel) magenta

> color (#!1 & sel) red

> hide #* target a

> show (#!1 & sel) target ab

> undo

[Repeated 1 time(s)]

> select clear

> view

> select /b:208

4 atoms, 3 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) red

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  

> color sel yellow

> select clear

> save /Users/zhangziyin/Desktop/Binding.png width 3000 height 1743
> supersample 4 transparentBackground true

> save /Users/zhangziyin/Desktop/PDB61rm.cxs

——— End of log from Fri Aug 15 14:57:58 2025 ———

> view name session-start

opened ChimeraX session  

> coulombic

The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:  
/A ARG 20  
/A LYS 24  
/A LYS 29  
/A LYS 38  
/A ARG 51  
/A LYS 56  
/A GLN 60  
/A LYS 62  
/A ARG 64  
/A GLU 66  
/A GLU 69  
/A ARG 72  
/A LEU 73  
/A LYS 77  
/A LYS 86  
/A GLU 135  
/A TYR 274  
/A ARG 276  
/A SER 376  
/A LYS 377  
/A LYS 380  
/A LYS 381  
/B GLU 10  
/B GLU 16  
/B ARG 20  
/B LYS 24  
/B GLU 35  
/B LYS 38  
/B GLN 48  
/B LYS 56  
/B ARG 72  
/B LYS 77  
/B LYS 115  
/B GLU 117  
/B GLU 135  
/B GLU 144  
/B LYS 166  
/B ASP 254  
/B TYR 274  
/B LYS 377  
/B SER 378  
/B ASP 379  
/B LYS 380  

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for pdb6r1m.ent_A SES surface #1.4: minimum, -21.99, mean
-3.67, maximum 10.81  
Coulombic values for pdb6r1m.ent_B SES surface #1.3: minimum, -20.14, mean
-2.49, maximum 10.64  
To also show corresponding color key, enter the above coulombic command and
add key true  

> hide surfaces

> save /Users/zhangziyin/Enlarge.png width 2000 height 1162 supersample 4
> transparentBackground true

> save /Users/zhangziyin/Desktop/Enlarge.png width 3000 height 1743
> supersample 4 transparentBackground true

> hide #!1.3 models

> show #1.3 models

> hide #!1.4 models

> show #1.4 models

> hide #!1.1 models

> show #!1.1 models

> hide #1.2 models

> show #1.2 models

> hide #!1 models

> show #!1 models

> sequence chain #1/A,B

Alignment identifier is 1  

> select /A-B:208

8 atoms, 6 bonds, 2 residues, 1 model selected  

> select /A-B:208

8 atoms, 6 bonds, 2 residues, 1 model selected  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 854, in show_settings  
self.settings_tool = SettingsTool(self,  
^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/settings_tool.py", line 74, in __init__  
hdr.add_options(header_panel, verbose_labels=False)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/alignment_headers/conservation.py", line 102, in add_options  
layout.addWidget(Citation(self.alignment.session, '\n'.join(self.AL2CO_cite),  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/citation.py", line 34, in __init__  
self.setFrameStyle(self.Panel | self.Raised)  
^^^^^^^^^^  
AttributeError: 'Citation' object has no attribute 'Panel'  
  
AttributeError: 'Citation' object has no attribute 'Panel'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/citation.py", line 34, in __init__  
self.setFrameStyle(self.Panel | self.Raised)  
^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 846, in show_transfer_seq_dialog  
self.transfer_seq_dialog = TransferSeqTool(self,  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/transfer_seq_tool.py", line 39, in __init__  
self.chain_list = ChainListWidget(sv.session,
autoselect=ChainListWidget.AUTOSELECT_SINGLE,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/widgets.py", line 57, in __init__  
super().__init__(**processed_kw)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 117, in __init__  
self.setSelectionMode({'single': self.SingleSelection, 'extended':
self.ExtendedSelection,  
^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'ChainListWidget' object has no attribute 'SingleSelection'  
  
AttributeError: 'ChainListWidget' object has no attribute 'SingleSelection'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 117, in __init__  
self.setSelectionMode({'single': self.SingleSelection, 'extended':
self.ExtendedSelection,  
^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select ::name="SSA"

58 atoms, 62 bonds, 2 residues, 1 model selected  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/dialog.py", line 273, in <lambda>  
lambda *args, ses=session: show_fetch_by_id_dialog(ses), tool_tip="Fetch files
from web",  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/dialog.py", line 299, in
show_fetch_by_id_dialog  
_fetch_by_id_dialog = FetchDialog(session, debug=debug)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/dialog.py", line 140, in __init__  
self.table = ItemTable(allow_user_sorting=False, auto_multiline_headers=False)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_table.py", line 323, in __init__  
self.setSizeAdjustPolicy(self.AdjustToContents)  
^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'ItemTable' object has no attribute 'AdjustToContents'  
  
AttributeError: 'ItemTable' object has no attribute 'AdjustToContents'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_table.py", line 323, in __init__  
self.setSizeAdjustPolicy(self.AdjustToContents)  
^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> ui tool show Rotamers

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 571, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1400, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/swap_res/__init__.py", line 54, in start_tool  
return prep_rotamers_dialog(session, tool_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/swap_res/tool.py", line 22, in prep_rotamers_dialog  
_prd = PrepRotamersDialog(session, rotamers_tool_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/swap_res/tool.py", line 73, in __init__  
= self._make_citation_widget()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/swap_res/tool.py", line 147, in _make_citation_widget  
return Citation(self.session, self.rot_lib.citation, prefix="Publications
using %s rotamers should"  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/citation.py", line 34, in __init__  
self.setFrameStyle(self.Panel | self.Raised)  
^^^^^^^^^^  
AttributeError: 'Citation' object has no attribute 'Panel'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1891, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3230, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/cmd.py", line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 578, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Rotamers in
bundle ChimeraX-SwapRes:  
'Citation' object has no attribute 'Panel'  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Rotamers in
bundle ChimeraX-SwapRes:  
'Citation' object has no attribute 'Panel'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 578, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  

> ui tool show Rotamers

> ui tool show "Add Charges"

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 571, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1400, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/add_charge/__init__.py", line 41, in start_tool  
return AddChargeTool(session, tool_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/add_charge/tool.py", line 48, in __init__  
self.structure_list = ShortASList(session)  
^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/widgets.py", line 40, in __init__  
super().__init__(session, class_filter=AtomicStructure, **kw)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 298, in __init__  
super().__init__(**_process_model_kw(session, **kw))  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/item_chooser.py", line 117, in __init__  
self.setSelectionMode({'single': self.SingleSelection, 'extended':
self.ExtendedSelection,  
^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'ShortASList' object has no attribute 'SingleSelection'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1891, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3230, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/cmd.py", line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 578, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Add Charges
in bundle ChimeraX-AddCharge:  
'ShortASList' object has no attribute 'SingleSelection'  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Add Charges
in bundle ChimeraX-AddCharge:  
'ShortASList' object has no attribute 'SingleSelection'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 578, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/rotamers/manager.py", line 100, in <lambda>  
self._menu_choose_cb(action, button, cb))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/rotamers/manager.py", line 156, in _menu_choose_cb  
callback()  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/options.py", line 213, in make_callback  
self._callback(self)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/swap_res/tool.py", line 128, in _lib_change_cb  
prev_cite = self.citation_widgets['showing']  
~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^  
KeyError: 'showing'  
  
KeyError: 'showing'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/swap_res/tool.py", line 128, in _lib_change_cb  
prev_cite = self.citation_widgets['showing']  
~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select /b:208

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select /b:208

4 atoms, 3 bonds, 1 residue, 1 model selected  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1068, in show_select_zone_dialog  
self._select_zone_dialog = SelZoneDialog(self.session)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 3048, in __init__  
self._update_button_states()  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 3070, in _update_button_states  
self.bbox.button(self.bbox.Ok).setEnabled(  
^^^^^^^^^^^^  
AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' object has no attribute
'Ok'  
  
AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' object has no attribute
'Ok'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 3070, in _update_button_states  
self.bbox.button(self.bbox.Ok).setEnabled(  
^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select /b:208

4 atoms, 3 bonds, 1 residue, 1 model selected  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1068, in show_select_zone_dialog  
self._select_zone_dialog = SelZoneDialog(self.session)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 3048, in __init__  
self._update_button_states()  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 3070, in _update_button_states  
self.bbox.button(self.bbox.Ok).setEnabled(  
^^^^^^^^^^^^  
AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' object has no attribute
'Ok'  
  
AttributeError: 'PySide6.QtWidgets.QDialogButtonBox' object has no attribute
'Ok'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 3070, in _update_button_states  
self.bbox.button(self.bbox.Ok).setEnabled(  
^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1
OpenGL vendor: Apple

Python: 3.11.9
Locale: UTF-8
Qt version: PySide6 6.9.1, Qt 6.9.1
Qt runtime version: 6.9.1
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: iMac21,1
      Model Number: Z12Z00035CH/A
      Chip: Apple M1
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 10151.81.1
      OS Loader Version: 10151.81.1

Software:

    System Software Overview:

      System Version: macOS 14.3.1 (23D60)
      Kernel Version: Darwin 23.3.0
      Time since boot: 8天20小时51分钟

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: Retina 4.5K (4480 x 2520)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal


Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    babel: 2.17.0
    beautifulsoup4: 4.13.4
    blockdiag: 3.0.0
    blosc2: 3.6.1
    build: 1.2.2.post1
    certifi: 2025.7.14
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.0
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.10
    ChimeraX-AtomicLibrary: 14.1.21
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.0
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.11.dev202508010600
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.3
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.7.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.15
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-Minimize: 1.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.22
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.15.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.4
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.4
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.2
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.47
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.3
    contourpy: 1.3.3
    coverage: 7.10.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.1.2
    debugpy: 1.8.15
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.59.0
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 5.0.0
    lxml: 5.3.1
    lz4: 4.3.2
    Markdown: 3.8.2
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.2
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PySide6: 6.9.1
    PySide6_Addons: 6.9.1
    PySide6_Essentials: 6.9.1
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.4
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 80.9.0
    sfftk-rw: 0.8.1
    shiboken6: 6.9.1
    six: 1.17.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.5
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.5
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.1
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14

[Zach Pearson]

Fixed with new qtshim that promotes PySide6 enums. Use a newer daily build that uses PyQt6 or the new tech preview that has the new shim.